HHsearch alignment for GI: 254780716 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.22 E-value=0.0018 Score=45.10 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=77.0
Q ss_pred CCEEEEEECCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 8805698157111688999997898-599973998999999971221127840328989998605778899997699069
Q gi|254780716|r 3 QADIGIIGLGSMGSNLSLNILDKGF-RLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDP 81 (475)
Q Consensus 3 k~~IGiIGLG~MG~~mA~nL~~~G~-~V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~ 81 (475)
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~-~---~~~~~~~~~~dliIN~tp~G~~ 94 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIA-Y---LDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEE-E---CCHHHHHCCCCEEEECCCCCCC
T ss_conf 99999986758999999999971998228860899999999998501366401-0---4534431568879876778777
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEC
Q ss_conf 999999997207899899967986578999999999847994306
Q gi|254780716|r 82 VDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIG 126 (475)
Q Consensus 82 v~~vi~~l~~~l~~g~iiID~sts~~~~t~~~~~~l~~kgi~fid 126 (475)
T Consensus 95 ~~~~~p~~~~~~~~~~~~~D~iY~P-~~T-~ll~~a~~~g~~~i~ 137 (155)
T cd01065 95 PGDELPLPPSLLKPGGVVYDVVYNP-LET-PLLKEARALGAKTID 137 (155)
T ss_pred CCCCCCCCHHHCCCCCEEEECCCCC-CCC-HHHHHHHHCCCEEEC
T ss_conf 8776767887759986898653178-788-999999998395877