HHsearch alignment for GI: 254780716 and conserved domain: cd05293
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.96 E-value=0.044 Score=34.91 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=63.4
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHH---CCCC--CCCCEECCCHHHHHHHCCCCCEEEEEC
Q ss_conf 805698157111688999997898--599973998999999971---2211--278403289899986057788999976
Q gi|254780716|r 4 ADIGIIGLGSMGSNLSLNILDKGF--RLAVYNKDFELTDVFIKK---ISGL--SQKVIVTKNLEQMVEAVCKPRKILMMV 76 (475)
Q Consensus 4 ~~IGiIGLG~MG~~mA~nL~~~G~--~V~vydr~~~~~~~l~~~---~~~~--~~~~~~~~s~~e~v~~l~~pr~Iil~v 76 (475)
T Consensus 4 ~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~~~----~~aDvVVitA 79 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT----ANSKVVIVTA 79 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHH----CCCCEEEECC
T ss_conf 869998978889999999996699887999938898332688886604012798559937999996----8999999889
Q ss_pred CC---------------HHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 99---------------06999999999720789989996798657899999
Q gi|254780716|r 77 TD---------------GDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIR 113 (475)
Q Consensus 77 p~---------------g~~v~~vi~~l~~~l~~g~iiID~sts~~~~t~~~ 113 (475)
T Consensus 80 G~~~k~g~~R~dLl~~N~~I~~~i~~~i~~~~-p~~ivivv--sNPvDv~t~ 128 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVV--SNPVDIMTY 128 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCEEEEC--CCCHHHHHH
T ss_conf 99999898889999988999999999988419-98469966--891899999