HHsearch alignment for GI: 254780716 and conserved domain: pfam03447
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=95.41 E-value=0.26 Score=29.20 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=67.5
Q ss_pred ECCHHHHHHHHHHHHCC----CE-EEEEECCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCEEEEECCCHHHHHH
Q ss_conf 15711168899999789----85-99973998999999971221127840328989998605778899997699069999
Q gi|254780716|r 10 GLGSMGSNLSLNILDKG----FR-LAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVDQ 84 (475)
Q Consensus 10 GLG~MG~~mA~nL~~~G----~~-V~vydr~~~~~~~l~~~~~~~~~~~~~~~s~~e~v~~l~~pr~Iil~vp~g~~v~~ 84 (475)
T Consensus 1 G~G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~~~-----~~~~~~~~~d~~~ll~~~-~iDvVVE~~g~-~~~~- 72 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEEIPLELVAVADRDLLSKARAA-----LLGDEPVTLDLDDLVADP-RPDVVVECASS-EAVA- 72 (116)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCC-----CCCCCEEECCHHHHHCCC-CCCEEEECCCC-HHHH-
T ss_conf 987028999999994920356799999847834323212-----466671577999996188-99899988994-8999-
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHH---HHHHHHHHHHCCCCE
Q ss_conf 9999972078998999679865789---999999998479943
Q gi|254780716|r 85 LIDKLKPLLSPEDILLDGGNSHFCD---TQIRSLQLSEKGIYF 124 (475)
Q Consensus 85 vi~~l~~~l~~g~iiID~sts~~~~---t~~~~~~l~~kgi~f 124 (475)
T Consensus 73 --~~~~~aL~~GkhVVTaNK~~lA~~~~~~eL~~~A~~~g~~~ 113 (116)
T pfam03447 73 --EYVLKALKAGKHVVTASKGALADLALRERLREAAEASGVRV 113 (116)
T ss_pred --HHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHHHCCCEE
T ss_conf --99999998799899907889678579999999999839969