RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (475 letters) >gnl|CDD|30711 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]. Length = 473 Score = 569 bits (1468), Expect = e-163 Identities = 223/474 (47%), Positives = 306/474 (64%), Gaps = 1/474 (0%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60 M +ADIG+IGL MGSNL+LNI D G+ +AVYN+ E TD F+ + + ++ ++E Sbjct: 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-RAKGKNIVPAYSIE 59 Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120 + V ++ KPRKIL+MV G PVD +I++L PLL DI++DGGNSH+ DT R+ +LSEK Sbjct: 60 EFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEK 119 Query: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180 GI F+G+GVSGG +GAR G S+M GG ++AY V IL I+AK PCC +GPDG+G Sbjct: 120 GILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAG 179 Query: 181 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL 240 HFVKM+HNGIEY +MQLIA+ Y IL+D L + EI+ +F +W+ G+L SYLI+ITA+IL Sbjct: 180 HFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 Query: 241 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK 300 D G P++D I DKA QKGTG ++I L +T+ A+FAR LS +DE Sbjct: 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 Query: 301 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360 + F++D+ ALYAS I+S+ QGF ++ +S++Y W L+L IA Sbjct: 300 ASKVLAGPKLGEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIAL 359 Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420 IWR GCIIRS+ L+ I + E+P NLL P +++ SLRR+V E G PV Sbjct: 360 IWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPV 419 Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTE 474 P+ S+ALSY+D++ R ANLIQAQRD+FG+H ++R DK H W Sbjct: 420 PAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGGGN 473 >gnl|CDD|37864 KOG2653, KOG2653, KOG2653, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]. Length = 487 Score = 446 bits (1149), Expect = e-126 Identities = 196/460 (42%), Positives = 284/460 (61%), Gaps = 5/460 (1%) Query: 4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMV 63 ADIG+IGL MG NL LNI DKGF + YN+ D F+ K+I +LE V Sbjct: 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLAN-EAKGTKIIGAYSLEDFV 65 Query: 64 EAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIY 123 + KPR I+++V G PVDQ I++L P L DI++DGGNS + DT+ R +L++KGI Sbjct: 66 SKLKKPRVIILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGIL 125 Query: 124 FIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNS-PCCALLGPDGSGHF 182 F+G GVSGG +GAR G SLM GG+++A+ +++I I+AK + PCC +G G+GHF Sbjct: 126 FVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHF 185 Query: 183 VKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSS 242 VKM+HNGIEY +MQLI + Y +L+ L + EI+ +F W+ G+L S+LI+ITA+IL Sbjct: 186 VKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILKF 245 Query: 243 SDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQ 302 D G P++D I DKA QKGTG ++I +L +T+ A+FAR LS +DE + Sbjct: 246 KDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRAS 304 Query: 303 SFFNPSSHFPLKCFD--SFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360 D F+ D+ ALYAS I+S+ QGF ++ +++++ W L+ IA Sbjct: 305 KVLKGPGVKRDMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIAL 364 Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420 +WR GCIIRS L+ I K+ +P NLL P ++ V++ S RR+V E G P Sbjct: 365 MWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFAKAVEEAQDSWRRVVALAVEAGIPT 424 Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDK 460 P+ S AL+++D + +R ANL+QAQRD+FG+H ++ + Sbjct: 425 PAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGE 464 >gnl|CDD|109451 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain. This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 Score = 351 bits (904), Expect = 2e-97 Identities = 128/293 (43%), Positives = 185/293 (63%), Gaps = 8/293 (2%) Query: 180 GHFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEI 239 GH+VKM+HNGIEY +MQLIA+ Y +L+ L + EI+ +F +W+ G+L SYLI+ITA+I Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60 Query: 240 LSSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE-- 297 L D G P++D I DKA QKGTG ++ +L + + A+FAR LS ++E Sbjct: 61 LRKKDE-DGKPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119 Query: 298 --SKKMQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSL 355 SK P + F++D+ ALYAS I+S+ QGF ++ +S++Y W+L+L Sbjct: 120 AASKV---LSGPKAAKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLNL 176 Query: 356 ATIARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTE 415 IARIWR GCIIR+Q L+ I + ++P NLL P +++K+ S RR+V E Sbjct: 177 GEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAVE 236 Query: 416 NGYPVPSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPW 468 G PVP+ S+ALSY+D++ +R ANLIQAQRD+FG+H ++R DK H W Sbjct: 237 AGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNW 289 >gnl|CDD|31226 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]. Length = 300 Score = 195 bits (498), Expect = 2e-50 Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 18/293 (6%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 IG+IGLG MG+NL +LD G + Y+ + + + +L+++V Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD------EGATGAASLDELVAK 56 Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125 + PR + +MV GD D +ID L PLLS DI++DGGNS++ D+ R+ L+EKGI+F+ Sbjct: 57 LSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116 Query: 126 GIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKM 185 +G SGGV GA G LM+GG+E+A R+E I +++ C GP GSGHFVKM Sbjct: 117 DVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDGYLYC---GPSGSGHFVKM 173 Query: 186 IHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGK-LSSYLIKITAEILSSSD 244 +HNGIEY MQ IA+ + +L++S ++ + W+ G + S+L+ +TAE Sbjct: 174 VHNGIEYGMMQAIAEGFELLKNS--PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD- 230 Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE 297 P +D I + S G G ++ E L + A+ R S D Sbjct: 231 -----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT 278 Score = 48.7 bits (116), Expect = 3e-06 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%) Query: 319 FVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQILNDIVK 378 FVK + N + + + +GF ++ + + L +A +W G +IRS +L+ + Sbjct: 170 FVKMVHNGIEYGMMQAIAEGFELL----KNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAE 225 Query: 379 SLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAALSY-FDTFIHDR 437 + +DP + S S + + T V + G P P ++ AL F + D Sbjct: 226 AFKKDPDLDQISGRVSDSGEGRWT-------VEEALDLGVPAPVIALALMMRFRSRQDDT 278 Query: 438 GTANLIQAQRDFFGSHGFDRKD 459 ++ A R+ FG H +K+ Sbjct: 279 FAGKVLAALRNEFGGHAVKKKN 300 >gnl|CDD|146202 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 Score = 166 bits (422), Expect = 2e-41 Identities = 63/178 (35%), Positives = 95/178 (53%), Gaps = 19/178 (10%) Query: 3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQM 62 A IG IGLG MGS ++LN+L G+ + VYN+ E + + + + + + Sbjct: 1 MAKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVA------EGAVAAASPAEA 54 Query: 63 VEAVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSE 119 + ++ MV G VD +I D L P L P DI++DG DT+ + +L E Sbjct: 55 AASA---DVVITMVPAGAAVDAVIFGEDGLLPGLKPGDIIIDGSTISPDDTRRLAKELKE 111 Query: 120 KGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176 KGI F+ VSGG +GA +G S+MVGG+E+A+ RV+ IL ++ A C +GP Sbjct: 112 KGIRFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGA------CVTYIGP 163 >gnl|CDD|32267 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]. Length = 286 Score = 95.7 bits (238), Expect = 3e-20 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQK-VIVTKNLEQMVE 64 I IGLG MGS ++ N+L G + VYN+ E K L+ V + + Sbjct: 3 IAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE------KAAELLAAAGATVAASPAEAAA 56 Query: 65 AVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKG 121 ++ M+ D V ++ + L L P I++D + + L+ KG Sbjct: 57 EA---DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG 113 Query: 122 IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180 + F+ VSGGV GA +G ++MVGG+ +A+ R + +L ++ +GP G+G Sbjct: 114 LEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIV------HVGPVGAG 167 Query: 181 HFVKMIHNGIEYANMQLIA 199 K+ +N + N+ +A Sbjct: 168 QAAKLANNILLAGNIAALA 186 >gnl|CDD|35630 KOG0409, KOG0409, KOG0409, Predicted dehydrogenase [General function prediction only]. Length = 327 Score = 66.8 bits (163), Expect = 1e-11 Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 28/204 (13%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 IG IGLG+MGS + N++ G+++ VY++ + F + + ++ + + + Sbjct: 38 IGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANS---PAEVAEDSDV 94 Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDT----QIRSLQLSE-- 119 V + MV + V ++ +LS + G D SL++++ Sbjct: 95 V------ITMVPNPKDVKDVLLGKSGVLS----GIRPGKKATVDMSTIDPDTSLEIAKAI 144 Query: 120 --KGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176 KG F+ VSGGVKGA G ++M GG+E + + + LG Sbjct: 145 SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF------LGG 198 Query: 177 DGSGHFVKMIHNGIEYANMQLIAD 200 G+G K+ +N + ++M +A+ Sbjct: 199 VGNGQAAKLCNNMLLGSSMVGLAE 222 >gnl|CDD|30635 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism]. Length = 279 Score = 36.1 bits (83), Expect = 0.024 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 13/100 (13%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 +GI+GLG MG +L+ + + G + + +D + G+ ++ V E EA Sbjct: 6 VGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEA 65 Query: 66 ----VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLD 101 V P + +++ +L P L I+ D Sbjct: 66 DLVIVAVPIEATE---------EVLKELAPHLKKGAIVTD 96 >gnl|CDD|30589 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 329 Score = 31.7 bits (72), Expect = 0.41 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 14/104 (13%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTD---------VFIKKISGLSQKVIVT 56 I +IG GS G+ L+ + G + ++ +D E+ ++ I L + T Sbjct: 4 IAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGIL-LPPNLKAT 62 Query: 57 KNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILL 100 +L + ++ I+++ + +++ +LKPLL + I++ Sbjct: 63 TDLAEALDGA----DIIVIAVPSQALREVLRQLKPLLLKDAIIV 102 >gnl|CDD|34192 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]. Length = 620 Score = 29.6 bits (66), Expect = 2.0 Identities = 11/14 (78%), Positives = 13/14 (92%) Query: 70 RKILMMVTDGDPVD 83 RKILMM++DG PVD Sbjct: 537 RKILMMISDGAPVD 550 >gnl|CDD|33755 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]. Length = 558 Score = 29.2 bits (65), Expect = 2.4 Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 422 SLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDR 457 +L L FD T +I+A+ FGS FD+ Sbjct: 173 ALRGELPNFDKERLASDTKKIIEAEIKVFGSAPFDK 208 >gnl|CDD|119387 cd06265, RNase_A_canonical, Canonical RNase A family includes all vertebrate homologues to the bovine pancreatic ribonuclease A (RNase A) that contain the catalytic site, necessary for RNase activity. In the human genome 8 RNases , refered to as "canonical" RNases, have been identified, pancreatic RNase (RNase 1), Eosinophil Derived Neurotoxin (SEDN/RNASE 2), Eosinophil Cationic Protein (ECP/RNase 3), RNase 4, Angiogenin (RNase 5), RNase 6 or k6, the skin derived RNase (RNase 7) and RNase 8. The eight human genes are all located in a cluster on chromosome 14. Canonical RNase A enzymes have special biological activities; for example, some stimulate the development of vascular endothelial cells, dendritic cells, and neurons, are cytotoxic/anti-tumoral and/or anti-pathogenic. RNase A is involved in endonucleolytic cleavage of 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates. The catalytic mechanism is a transphosphorylation of P-O 5' bonds on the 3' side of pyrimidines and subsequent hydrolysis to generate 3' phosphate groups. The canonical RNase A family proteins have a conserved catalytic triad (two histidines and one lysine). They also share 6 to 8 cysteines that form three to four disulfide bonds. Two disulfide bonds that are close to the N and C termini contribute most significantly to conformational stability. Angiogenin or RNAse 5 has been implicated in tumor-associated angiogenesis. Comparative analysis in mammals and birds indicates that the whole family may have originated from a RNase 5-like gene. This hypothesis is supported by the fact that only RNase 5-like RNases have been reported outside the mammalian class. The RNase 5 group would therefore be the most ancient form of this family, and all other members would have arisen during mammalian evolution.. Length = 115 Score = 29.2 bits (66), Expect = 2.5 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%) Query: 401 KTIPSLRRIVVTCTENGYPV 420 + PS R+IVV C ENG PV Sbjct: 93 RGTPSTRKIVVAC-ENGVPV 111 >gnl|CDD|37228 KOG2017, KOG2017, KOG2017, Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]. Length = 427 Score = 29.2 bits (65), Expect = 2.7 Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 84 QLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLS 118 +LI + LS +L DG + HF ++RS + Sbjct: 246 KLIAGIGESLSGRLLLFDGLSGHFRTIRLRSRRPK 280 >gnl|CDD|30693 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]. Length = 266 Score = 29.0 bits (65), Expect = 2.8 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 9/63 (14%) Query: 6 IGIIGLGSMGSNLSLNILDKG----FRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQ 61 IG IG G+MG + +L G + V N+ E + V+ T + ++ Sbjct: 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG-----VVTTTDNQE 58 Query: 62 MVE 64 VE Sbjct: 59 AVE 61 >gnl|CDD|30808 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and metabolism]. Length = 333 Score = 29.0 bits (65), Expect = 3.1 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRL-AVYNKDFELTDVF------IKKISGLSQKV 53 MK +G++GLG++GS + + +K L + + V ++ + L+ +V Sbjct: 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEV 60 Query: 54 IVTKNLEQMVEAVCKPRKILMMV-------TDGDPVDQLIDKLK 90 T + + V I ++V +P D + L+ Sbjct: 61 WTTDGALSLGDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALE 104 >gnl|CDD|29227 cd01454, vWA_norD_type, norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------> NO2- ------> NO -------> N2O ---------> N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.. Length = 174 Score = 28.0 bits (62), Expect = 5.5 Identities = 8/14 (57%), Positives = 13/14 (92%) Query: 70 RKILMMVTDGDPVD 83 RKIL++++DG+P D Sbjct: 104 RKILLVISDGEPND 117 >gnl|CDD|36138 KOG0920, KOG0920, KOG0920, ATP-dependent RNA helicase A [RNA processing and modification]. Length = 924 Score = 28.0 bits (62), Expect = 6.2 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 363 RAGCIIRSQILNDIVKSLTEDPSSTNL-LNIPSISEKVKKTIPSLRRIVVTCTENGYPVP 421 A + + + +L E T L L++ S+ V+ L + C + P Sbjct: 590 PADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLD---PAL 646 Query: 422 SLSAALSYFDTFIHDRGTANLIQAQRDFFGS 452 +++AALS+ F+ G + Sbjct: 647 TIAAALSFKSPFVSPLGKREEADKAKKLLAL 677 >gnl|CDD|30408 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]. Length = 338 Score = 27.8 bits (62), Expect = 6.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAV 31 + IIG GS G +LN+ D G + + Sbjct: 21 VAIIGYGSQGHAQALNLRDSGLNVII 46 >gnl|CDD|37674 KOG2463, KOG2463, KOG2463, Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]. Length = 376 Score = 27.7 bits (61), Expect = 7.1 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 15/81 (18%) Query: 364 AGCIIRSQILNDIVKS-------LTE--DPSSTNLLNIPSISEKVKKTIPSLRRIVVTCT 414 G II +IL + S + E D +S L + K+++ P R V+ Sbjct: 12 TGAIIEKRILTNKADSFYTTPEVVNEIRDAASRKRLEFLPFTIKLREPSPEYVRKVIKFA 71 Query: 415 ENGYPVPSLSA------ALSY 429 + SLS AL+Y Sbjct: 72 KLTGDYSSLSDTDIKVLALTY 92 >gnl|CDD|37591 KOG2380, KOG2380, KOG2380, Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]. Length = 480 Score = 27.3 bits (60), Expect = 8.5 Identities = 11/29 (37%), Positives = 18/29 (62%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNK 34 I IIG G+MG L+ ++D G L +++ Sbjct: 55 IAIIGFGNMGQFLAETLIDAGHGLICHSR 83 >gnl|CDD|35524 KOG0303, KOG0303, KOG0303, Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]. Length = 472 Score = 27.6 bits (61), Expect = 8.5 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 9/116 (7%) Query: 317 DSFVKDLENALY---ASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQIL 373 D F +DL Y + T W+ GK ++ SL + R + + IL Sbjct: 353 DLFQEDL----YPDTPGPEPALTAEEWLSGKDADPILISLRDGYVPPKHRELRVKKRNIL 408 Query: 374 NDIVKSLTED--PSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL 427 +D SS++ P ++ + ++ + + + L L Sbjct: 409 SDSRPPAAPSGWRSSSSTSEAPLSQHTLETLLEEIKALRAPVQKQEQRITRLEEKL 464 >gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism]. Length = 414 Score = 27.5 bits (61), Expect = 8.7 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 26/105 (24%) Query: 2 KQADIGIIGLGSMGSNLSLNILDKGF-RLAVYNKDFELTDVFIKKISGL----------- 49 K + +IG G MG ++ ++ +KG ++ + N+ E + KK+ Sbjct: 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEAL 236 Query: 50 -----------SQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVD 83 + I+T+ +MVE K RK L++V P D Sbjct: 237 AEADVVISSTSAPHPIITR---EMVERALKIRKRLLIVDIAVPRD 278 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0783 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,550,839 Number of extensions: 290264 Number of successful extensions: 844 Number of sequences better than 10.0: 1 Number of HSP's gapped: 826 Number of HSP's successfully gapped: 29 Length of query: 475 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 378 Effective length of database: 4,167,664 Effective search space: 1575376992 Effective search space used: 1575376992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.4 bits)