RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780716|ref|YP_003065129.1| 6-phosphogluconate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
         (475 letters)



>gnl|CDD|30711 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
           transport and metabolism].
          Length = 473

 Score =  569 bits (1468), Expect = e-163
 Identities = 223/474 (47%), Positives = 306/474 (64%), Gaps = 1/474 (0%)

Query: 1   MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60
           M +ADIG+IGL  MGSNL+LNI D G+ +AVYN+  E TD F+ +     + ++   ++E
Sbjct: 1   MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-RAKGKNIVPAYSIE 59

Query: 61  QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120
           + V ++ KPRKIL+MV  G PVD +I++L PLL   DI++DGGNSH+ DT  R+ +LSEK
Sbjct: 60  EFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEK 119

Query: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
           GI F+G+GVSGG +GAR G S+M GG ++AY  V  IL  I+AK    PCC  +GPDG+G
Sbjct: 120 GILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAG 179

Query: 181 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL 240
           HFVKM+HNGIEY +MQLIA+ Y IL+D L  +  EI+ +F +W+ G+L SYLI+ITA+IL
Sbjct: 180 HFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239

Query: 241 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK 300
              D   G P++D I DKA QKGTG  ++I    L   +T+   A+FAR LS  +DE   
Sbjct: 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299

Query: 301 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360
                           + F++D+  ALYAS I+S+ QGF ++  +S++Y W L+L  IA 
Sbjct: 300 ASKVLAGPKLGEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIAL 359

Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420
           IWR GCIIRS+ L+ I  +  E+P   NLL  P     +++   SLRR+V    E G PV
Sbjct: 360 IWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPV 419

Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTE 474
           P+ S+ALSY+D++   R  ANLIQAQRD+FG+H ++R DK    H  W      
Sbjct: 420 PAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGGGN 473


>gnl|CDD|37864 KOG2653, KOG2653, KOG2653, 6-phosphogluconate dehydrogenase
           [Carbohydrate transport and metabolism].
          Length = 487

 Score =  446 bits (1149), Expect = e-126
 Identities = 196/460 (42%), Positives = 284/460 (61%), Gaps = 5/460 (1%)

Query: 4   ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMV 63
           ADIG+IGL  MG NL LNI DKGF +  YN+     D F+        K+I   +LE  V
Sbjct: 7   ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLAN-EAKGTKIIGAYSLEDFV 65

Query: 64  EAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIY 123
             + KPR I+++V  G PVDQ I++L P L   DI++DGGNS + DT+ R  +L++KGI 
Sbjct: 66  SKLKKPRVIILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGIL 125

Query: 124 FIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNS-PCCALLGPDGSGHF 182
           F+G GVSGG +GAR G SLM GG+++A+  +++I   I+AK  +  PCC  +G  G+GHF
Sbjct: 126 FVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHF 185

Query: 183 VKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSS 242
           VKM+HNGIEY +MQLI + Y +L+  L  +  EI+ +F  W+ G+L S+LI+ITA+IL  
Sbjct: 186 VKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILKF 245

Query: 243 SDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQ 302
            D   G P++D I DKA QKGTG  ++I   +L   +T+   A+FAR LS  +DE  +  
Sbjct: 246 KDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRAS 304

Query: 303 SFFNPSSHFPLKCFD--SFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360
                         D   F+ D+  ALYAS I+S+ QGF ++ +++++  W L+   IA 
Sbjct: 305 KVLKGPGVKRDMGDDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIAL 364

Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420
           +WR GCIIRS  L+ I K+   +P   NLL  P  ++ V++   S RR+V    E G P 
Sbjct: 365 MWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFAKAVEEAQDSWRRVVALAVEAGIPT 424

Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDK 460
           P+ S AL+++D +  +R  ANL+QAQRD+FG+H ++   +
Sbjct: 425 PAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGE 464


>gnl|CDD|109451 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal
           domain.  This family represents the C-terminal all-alpha
           domain of 6-phosphogluconate dehydrogenase. The domain
           contains two structural repeats of 5 helices each.
          Length = 290

 Score =  351 bits (904), Expect = 2e-97
 Identities = 128/293 (43%), Positives = 185/293 (63%), Gaps = 8/293 (2%)

Query: 180 GHFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEI 239
           GH+VKM+HNGIEY +MQLIA+ Y +L+  L  +  EI+ +F +W+ G+L SYLI+ITA+I
Sbjct: 1   GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60

Query: 240 LSSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE-- 297
           L   D   G P++D I DKA QKGTG  ++    +L   + +   A+FAR LS  ++E  
Sbjct: 61  LRKKDE-DGKPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119

Query: 298 --SKKMQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSL 355
             SK       P +         F++D+  ALYAS I+S+ QGF ++  +S++Y W+L+L
Sbjct: 120 AASKV---LSGPKAAKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLNL 176

Query: 356 ATIARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTE 415
             IARIWR GCIIR+Q L+ I  +  ++P   NLL  P   +++K+   S RR+V    E
Sbjct: 177 GEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAVE 236

Query: 416 NGYPVPSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPW 468
            G PVP+ S+ALSY+D++  +R  ANLIQAQRD+FG+H ++R DK    H  W
Sbjct: 237 AGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNW 289


>gnl|CDD|31226 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase
           [Carbohydrate transport and metabolism].
          Length = 300

 Score =  195 bits (498), Expect = 2e-50
 Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 18/293 (6%)

Query: 6   IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
           IG+IGLG MG+NL   +LD G  +  Y+ +    +          +      +L+++V  
Sbjct: 3   IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD------EGATGAASLDELVAK 56

Query: 66  VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125
           +  PR + +MV  GD  D +ID L PLLS  DI++DGGNS++ D+  R+  L+EKGI+F+
Sbjct: 57  LSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL 116

Query: 126 GIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKM 185
            +G SGGV GA  G  LM+GG+E+A  R+E I  +++        C   GP GSGHFVKM
Sbjct: 117 DVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDGYLYC---GPSGSGHFVKM 173

Query: 186 IHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGK-LSSYLIKITAEILSSSD 244
           +HNGIEY  MQ IA+ + +L++S      ++  +   W+ G  + S+L+ +TAE      
Sbjct: 174 VHNGIEYGMMQAIAEGFELLKNS--PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD- 230

Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE 297
                P +D I  + S  G G  ++ E   L     +   A+  R  S   D 
Sbjct: 231 -----PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDT 278



 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 319 FVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQILNDIVK 378
           FVK + N +    + +  +GF ++    +   +   L  +A +W  G +IRS +L+   +
Sbjct: 170 FVKMVHNGIEYGMMQAIAEGFELL----KNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAE 225

Query: 379 SLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAALSY-FDTFIHDR 437
           +  +DP    +    S S + + T       V    + G P P ++ AL   F +   D 
Sbjct: 226 AFKKDPDLDQISGRVSDSGEGRWT-------VEEALDLGVPAPVIALALMMRFRSRQDDT 278

Query: 438 GTANLIQAQRDFFGSHGFDRKD 459
               ++ A R+ FG H   +K+
Sbjct: 279 FAGKVLAALRNEFGGHAVKKKN 300


>gnl|CDD|146202 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
           dehydrogenase.  The NAD binding domain of
           6-phosphogluconate dehydrogenase adopts a Rossmann fold.
          Length = 163

 Score =  166 bits (422), Expect = 2e-41
 Identities = 63/178 (35%), Positives = 95/178 (53%), Gaps = 19/178 (10%)

Query: 3   QADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQM 62
            A IG IGLG MGS ++LN+L  G+ + VYN+  E  +  +       +  +   +  + 
Sbjct: 1   MAKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVA------EGAVAAASPAEA 54

Query: 63  VEAVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSE 119
             +      ++ MV  G  VD +I   D L P L P DI++DG      DT+  + +L E
Sbjct: 55  AASA---DVVITMVPAGAAVDAVIFGEDGLLPGLKPGDIIIDGSTISPDDTRRLAKELKE 111

Query: 120 KGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176
           KGI F+   VSGG +GA +G  S+MVGG+E+A+ RV+ IL ++ A      C   +GP
Sbjct: 112 KGIRFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGA------CVTYIGP 163


>gnl|CDD|32267 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
           beta-hydroxyacid dehydrogenases [Lipid metabolism].
          Length = 286

 Score = 95.7 bits (238), Expect = 3e-20
 Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)

Query: 6   IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQK-VIVTKNLEQMVE 64
           I  IGLG MGS ++ N+L  G  + VYN+  E      K    L+     V  +  +   
Sbjct: 3   IAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE------KAAELLAAAGATVAASPAEAAA 56

Query: 65  AVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKG 121
                  ++ M+ D   V  ++   + L   L P  I++D         +  +  L+ KG
Sbjct: 57  EA---DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG 113

Query: 122 IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
           + F+   VSGGV GA +G  ++MVGG+ +A+ R + +L ++            +GP G+G
Sbjct: 114 LEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIV------HVGPVGAG 167

Query: 181 HFVKMIHNGIEYANMQLIA 199
              K+ +N +   N+  +A
Sbjct: 168 QAAKLANNILLAGNIAALA 186


>gnl|CDD|35630 KOG0409, KOG0409, KOG0409, Predicted dehydrogenase [General
           function prediction only].
          Length = 327

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 28/204 (13%)

Query: 6   IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
           IG IGLG+MGS +  N++  G+++ VY++  +    F +  + ++        + +  + 
Sbjct: 38  IGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANS---PAEVAEDSDV 94

Query: 66  VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDT----QIRSLQLSE-- 119
           V      + MV +   V  ++     +LS     +  G     D        SL++++  
Sbjct: 95  V------ITMVPNPKDVKDVLLGKSGVLS----GIRPGKKATVDMSTIDPDTSLEIAKAI 144

Query: 120 --KGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176
             KG  F+   VSGGVKGA  G  ++M GG+E  +     +   +            LG 
Sbjct: 145 SNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF------LGG 198

Query: 177 DGSGHFVKMIHNGIEYANMQLIAD 200
            G+G   K+ +N +  ++M  +A+
Sbjct: 199 VGNGQAAKLCNNMLLGSSMVGLAE 222


>gnl|CDD|30635 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
           metabolism].
          Length = 279

 Score = 36.1 bits (83), Expect = 0.024
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 6   IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
           +GI+GLG MG +L+  + + G  + +  +D     +      G+  ++ V    E   EA
Sbjct: 6   VGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEA 65

Query: 66  ----VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLD 101
               V  P +            +++ +L P L    I+ D
Sbjct: 66  DLVIVAVPIEATE---------EVLKELAPHLKKGAIVTD 96


>gnl|CDD|30589 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy
           production and conversion].
          Length = 329

 Score = 31.7 bits (72), Expect = 0.41
 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 6   IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTD---------VFIKKISGLSQKVIVT 56
           I +IG GS G+ L+  +   G  + ++ +D E+            ++  I  L   +  T
Sbjct: 4   IAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGIL-LPPNLKAT 62

Query: 57  KNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILL 100
            +L + ++       I+++      + +++ +LKPLL  + I++
Sbjct: 63  TDLAEALDGA----DIIVIAVPSQALREVLRQLKPLLLKDAIIV 102


>gnl|CDD|34192 COG4547, CobT, Cobalamin biosynthesis protein CobT
           (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
           phosphoribosyltransferase) [Coenzyme metabolism].
          Length = 620

 Score = 29.6 bits (66), Expect = 2.0
 Identities = 11/14 (78%), Positives = 13/14 (92%)

Query: 70  RKILMMVTDGDPVD 83
           RKILMM++DG PVD
Sbjct: 537 RKILMMISDGAPVD 550


>gnl|CDD|33755 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain
           [General function prediction only].
          Length = 558

 Score = 29.2 bits (65), Expect = 2.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 422 SLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDR 457
           +L   L  FD       T  +I+A+   FGS  FD+
Sbjct: 173 ALRGELPNFDKERLASDTKKIIEAEIKVFGSAPFDK 208


>gnl|CDD|119387 cd06265, RNase_A_canonical, Canonical RNase A family includes all
           vertebrate homologues to the bovine pancreatic
           ribonuclease A (RNase A) that contain the catalytic
           site, necessary for RNase activity.  In the human genome
           8 RNases , refered to as "canonical" RNases, have been
           identified, pancreatic RNase (RNase 1), Eosinophil
           Derived Neurotoxin (SEDN/RNASE 2), Eosinophil Cationic
           Protein (ECP/RNase 3), RNase 4, Angiogenin (RNase 5),
           RNase 6 or k6, the skin derived RNase (RNase 7) and
           RNase 8. The eight human genes are all located in a
           cluster on chromosome 14. Canonical RNase A enzymes have
           special biological activities; for example, some
           stimulate the development of vascular endothelial cells,
           dendritic cells, and neurons, are cytotoxic/anti-tumoral
           and/or anti-pathogenic. RNase A is involved in
           endonucleolytic cleavage of 3'-phosphomononucleotides
           and 3'-phosphooligonucleotides ending in C-P or U-P with
           2',3'-cyclic phosphate intermediates. The catalytic
           mechanism is a transphosphorylation of P-O 5' bonds on
           the 3' side of pyrimidines and subsequent hydrolysis to
           generate 3' phosphate groups. The canonical RNase A
           family proteins have a conserved catalytic triad (two
           histidines and one lysine). They also share 6 to 8
           cysteines that form three to four disulfide bonds. Two
           disulfide bonds that are close to the N and C termini
           contribute most significantly to conformational
           stability. Angiogenin or RNAse 5 has been implicated in
           tumor-associated angiogenesis. Comparative analysis in
           mammals and birds indicates that the whole family may
           have originated from a RNase 5-like gene. This
           hypothesis is supported by the fact that only RNase
           5-like RNases have been reported outside the mammalian
           class. The RNase 5 group would therefore be the most
           ancient form of this family, and all other members would
           have arisen during mammalian evolution..
          Length = 115

 Score = 29.2 bits (66), Expect = 2.5
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 401 KTIPSLRRIVVTCTENGYPV 420
           +  PS R+IVV C ENG PV
Sbjct: 93  RGTPSTRKIVVAC-ENGVPV 111


>gnl|CDD|37228 KOG2017, KOG2017, KOG2017, Molybdopterin synthase sulfurylase
           [Coenzyme transport and metabolism].
          Length = 427

 Score = 29.2 bits (65), Expect = 2.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 84  QLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLS 118
           +LI  +   LS   +L DG + HF   ++RS +  
Sbjct: 246 KLIAGIGESLSGRLLLFDGLSGHFRTIRLRSRRPK 280


>gnl|CDD|30693 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid
          transport and metabolism].
          Length = 266

 Score = 29.0 bits (65), Expect = 2.8
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 6  IGIIGLGSMGSNLSLNILDKG----FRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQ 61
          IG IG G+MG  +   +L  G      + V N+  E       +       V+ T + ++
Sbjct: 4  IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG-----VVTTTDNQE 58

Query: 62 MVE 64
           VE
Sbjct: 59 AVE 61


>gnl|CDD|30808 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and
           metabolism].
          Length = 333

 Score = 29.0 bits (65), Expect = 3.1
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 1   MKQADIGIIGLGSMGSNLSLNILDKGFRL-AVYNKDFELTDVF------IKKISGLSQKV 53
           MK   +G++GLG++GS +   + +K   L      +  +  V       ++ +  L+ +V
Sbjct: 1   MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEV 60

Query: 54  IVTKNLEQMVEAVCKPRKILMMV-------TDGDPVDQLIDKLK 90
             T     + + V     I ++V          +P D  +  L+
Sbjct: 61  WTTDGALSLGDEVLLDEDIDVVVELVGGDVEPAEPADLYLKALE 104


>gnl|CDD|29227 cd01454, vWA_norD_type, norD type: Denitrifying bacteria contain
           both membrane bound and periplasmic nitrate reductases.
           Denitrification plays a major role  in completing the
           nitrogen cycle by converting nitrate or nitrite to
           nitrogen gas. The pathway for microbial denitrification
           has been established as NO3-  ------> NO2- ------> NO
           -------> N2O ---------> N2. This reaction generally
           occurs under oxygen limiting conditions. Genetic and
           biochemical studies have shown that the first srep of
           the biochemical pathway is catalyzed by periplasmic
           nitrate reductases. This family is widely present in
           proteobacteria and firmicutes. This version of the
           domain is also present in some archaeal members. The
           function of the vWA domain in this sub-group is not
           known. Members of this subgroup have a conserved MIDAS
           motif..
          Length = 174

 Score = 28.0 bits (62), Expect = 5.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)

Query: 70  RKILMMVTDGDPVD 83
           RKIL++++DG+P D
Sbjct: 104 RKILLVISDGEPND 117


>gnl|CDD|36138 KOG0920, KOG0920, KOG0920, ATP-dependent RNA helicase A [RNA
           processing and modification].
          Length = 924

 Score = 28.0 bits (62), Expect = 6.2
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 363 RAGCIIRSQILNDIVKSLTEDPSSTNL-LNIPSISEKVKKTIPSLRRIVVTCTENGYPVP 421
            A  +  +      + +L E    T L L++ S+   V+     L   +  C +   P  
Sbjct: 590 PADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLD---PAL 646

Query: 422 SLSAALSYFDTFIHDRGTANLIQAQRDFFGS 452
           +++AALS+   F+   G        +     
Sbjct: 647 TIAAALSFKSPFVSPLGKREEADKAKKLLAL 677


>gnl|CDD|30408 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport
          and metabolism / Coenzyme metabolism].
          Length = 338

 Score = 27.8 bits (62), Expect = 6.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 6  IGIIGLGSMGSNLSLNILDKGFRLAV 31
          + IIG GS G   +LN+ D G  + +
Sbjct: 21 VAIIGYGSQGHAQALNLRDSGLNVII 46


>gnl|CDD|37674 KOG2463, KOG2463, KOG2463, Predicted RNA-binding protein Nob1p
           involved in 26S proteasome assembly [Posttranslational
           modification, protein turnover, chaperones].
          Length = 376

 Score = 27.7 bits (61), Expect = 7.1
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 15/81 (18%)

Query: 364 AGCIIRSQILNDIVKS-------LTE--DPSSTNLLNIPSISEKVKKTIPSLRRIVVTCT 414
            G II  +IL +   S       + E  D +S   L     + K+++  P   R V+   
Sbjct: 12  TGAIIEKRILTNKADSFYTTPEVVNEIRDAASRKRLEFLPFTIKLREPSPEYVRKVIKFA 71

Query: 415 ENGYPVPSLSA------ALSY 429
           +      SLS       AL+Y
Sbjct: 72  KLTGDYSSLSDTDIKVLALTY 92


>gnl|CDD|37591 KOG2380, KOG2380, KOG2380, Prephenate dehydrogenase (NADP+)
          [Amino acid transport and metabolism].
          Length = 480

 Score = 27.3 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 6  IGIIGLGSMGSNLSLNILDKGFRLAVYNK 34
          I IIG G+MG  L+  ++D G  L  +++
Sbjct: 55 IAIIGFGNMGQFLAETLIDAGHGLICHSR 83


>gnl|CDD|35524 KOG0303, KOG0303, KOG0303, Actin-binding protein Coronin, contains
           WD40 repeats [Cytoskeleton].
          Length = 472

 Score = 27.6 bits (61), Expect = 8.5
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 317 DSFVKDLENALY---ASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQIL 373
           D F +DL    Y        + T   W+ GK ++    SL    +    R   + +  IL
Sbjct: 353 DLFQEDL----YPDTPGPEPALTAEEWLSGKDADPILISLRDGYVPPKHRELRVKKRNIL 408

Query: 374 NDIVKSLTED--PSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL 427
           +D           SS++    P     ++  +  ++ +     +    +  L   L
Sbjct: 409 SDSRPPAAPSGWRSSSSTSEAPLSQHTLETLLEEIKALRAPVQKQEQRITRLEEKL 464


>gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
          Length = 414

 Score = 27.5 bits (61), Expect = 8.7
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 26/105 (24%)

Query: 2   KQADIGIIGLGSMGSNLSLNILDKGF-RLAVYNKDFELTDVFIKKISGL----------- 49
           K   + +IG G MG  ++ ++ +KG  ++ + N+  E  +   KK+              
Sbjct: 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEAL 236

Query: 50  -----------SQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVD 83
                      +   I+T+   +MVE   K RK L++V    P D
Sbjct: 237 AEADVVISSTSAPHPIITR---EMVERALKIRKRLLIVDIAVPRD 278


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,550,839
Number of extensions: 290264
Number of successful extensions: 844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 29
Length of query: 475
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 378
Effective length of database: 4,167,664
Effective search space: 1575376992
Effective search space used: 1575376992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)