RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780716|ref|YP_003065129.1| 6-phosphogluconate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(475 letters)
>gnl|CDD|181758 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated.
Length = 459
Score = 604 bits (1561), Expect = e-173
Identities = 212/457 (46%), Positives = 300/457 (65%), Gaps = 4/457 (0%)
Query: 14 MGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKIL 73
MG NL+LNI G+ +AVYN+ E TD F+ + G +K++ LE+ V ++ KPRKIL
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE-EGKGKKIVPAYTLEEFVASLEKPRKIL 59
Query: 74 MMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGVSGGV 133
+MV G PVD +I++L PLL DI++DGGNS++ DT R +L+EKGI+FIG+GVSGG
Sbjct: 60 LMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119
Query: 134 KGARSGASLMVGGNEKAYNRVENILLSISAKYQN-SPCCALLGPDGSGHFVKMIHNGIEY 192
+GA G S+M GG ++AY V IL I+AK ++ PC +GPDG+GH+VKM+HNGIEY
Sbjct: 120 EGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEY 179
Query: 193 ANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSDTITGMPII 252
+MQLIA+ Y +L+D L + EI+ +F++W+ G+L+SYLI+ITA+IL D TG P++
Sbjct: 180 GDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPLV 239
Query: 253 DVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQSFFN-PSSHF 311
DVI DKA QKGTG + L +T+ A+FAR LS +D+ + P++ F
Sbjct: 240 DVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAAKF 299
Query: 312 PLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQ 371
F++D+ ALYAS I+S+ QGF ++ +SE+Y W L L IARIWR GCIIR+Q
Sbjct: 300 EGD-KAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQ 358
Query: 372 ILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAALSYFD 431
L I + +P NLL P + +++ +LRR+V + G PVP+ S+ALSY+D
Sbjct: 359 FLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYD 418
Query: 432 TFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPW 468
++ R ANLIQAQRD+FG+H ++R DK H W
Sbjct: 419 SYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEW 455
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase, decarboxylating.
This model does not specify whether the cofactor is NADP
only (EC 1.1.1.44), NAD only, or both. The model does
not assign an EC number for that reason.
Length = 467
Score = 519 bits (1340), Expect = e-148
Identities = 210/457 (45%), Positives = 298/457 (65%), Gaps = 3/457 (0%)
Query: 5 DIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVE 64
DIG+IGL MGSNL+LN+ D GF ++VYN+ E TD F+ + +K++ ++E+ V+
Sbjct: 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE-HAKGKKIVGAYSIEEFVQ 59
Query: 65 AVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYF 124
++ +PRKI++MV G PVD +I++L PLL DI++DGGNSH+ DT+ R +L KGI F
Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119
Query: 125 IGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVK 184
+G GVSGG +GAR G S+M GG+ +A+ V I I+AK PCC +GPDG+GH+VK
Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVK 179
Query: 185 MIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSD 244
M+HNGIEY +MQLI + Y IL+D L + EI+ +F++W+ G+L SYLI+ITA+IL D
Sbjct: 180 MVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD 239
Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQSF 304
G P++D I D A QKGTG + I L +T+ ++FAR LS ++E
Sbjct: 240 E-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKV 298
Query: 305 F-NPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWR 363
P + P + F++D+ ALYAS I+S+ QGF ++ ++SE+Y W L+L IA IWR
Sbjct: 299 LSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWR 358
Query: 364 AGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSL 423
GCIIRS L+ I K+ E+P NLL P + +K RR+V E G PVP+
Sbjct: 359 GGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAF 418
Query: 424 SAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDK 460
SAALS++D + R ANL+QAQRD+FG+H ++R DK
Sbjct: 419 SAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDK 455
>gnl|CDD|185475 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional.
Length = 470
Score = 482 bits (1242), Expect = e-136
Identities = 198/470 (42%), Positives = 307/470 (65%), Gaps = 3/470 (0%)
Query: 3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQM 62
+DIG+IGL MG NL+LNI +GF+++VYN+ +E T+ F+KK + +V LE++
Sbjct: 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL 60
Query: 63 VEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGI 122
V ++ KPRK+++++ G+ VD+ ID L PLL DI++DGGN + +T+ R + EKGI
Sbjct: 61 VNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGI 120
Query: 123 YFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHF 182
++G+GVSGG +GAR G SLM GGN++AY+ V++IL SAK +SPC +GP SGH+
Sbjct: 121 LYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHY 180
Query: 183 VKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSS 242
VKM+HNGIEY +MQLI++ Y +++ L + E+S +F+KW+ G L+SYLI+ITA+IL+
Sbjct: 181 VKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK 240
Query: 243 SDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQ 302
D + ++D I D A KGTG ++ E + + ++ ARN+S ++E K
Sbjct: 241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKAS 300
Query: 303 SFF---NPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIA 359
S NP++ + F+ DL+NALY S I+S+TQGF++I ++S+++ W+L+L IA
Sbjct: 301 SHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIA 360
Query: 360 RIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419
RIWR GCIIR+ L+ I + ++P L P ++++K PS R++V T+NG P
Sbjct: 361 RIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIP 420
Query: 420 VPSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQ 469
P+ SA+L+Y+ + ANL+QAQRD+FG+H + R D+ H W+
Sbjct: 421 TPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470
>gnl|CDD|177984 PLN02350, PLN02350, phosphogluconate dehydrogenase
(decarboxylating).
Length = 493
Score = 399 bits (1027), Expect = e-112
Identities = 184/485 (37%), Positives = 288/485 (59%), Gaps = 13/485 (2%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFI---KKISGLSQKVIVTK 57
+ IG+ GL MG NL+LNI +KGF ++VYN+ D + KK L + K
Sbjct: 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNL--PLYGFK 61
Query: 58 NLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQL 117
+ E V ++ KPR ++++V G PVDQ I L + P D ++DGGN + +T+ R +
Sbjct: 62 DPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEA 121
Query: 118 SEKGIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPD 177
+EKG+ ++G+GVSGG +GAR+G SLM GG+ +AY +E+IL ++A+ + PC +GP
Sbjct: 122 AEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG 181
Query: 178 GSGHFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITA 237
G+G+FVKM+HNGIEY +MQLI++ Y +L+ + E++ +F++W+ G+L S+LI+ITA
Sbjct: 182 GAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITA 241
Query: 238 EILSSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE 297
+I S D ++D I DK KGTG ++ + +LS + ++ AR LS ++E
Sbjct: 242 DIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEE 301
Query: 298 ----SKKMQSFFNPSSHFPLKCFDS--FVKDLENALYASTILSFTQGFWVI-GKSSEKYS 350
+K + D + D+ ALYAS I S+ QG +I KS EK
Sbjct: 302 RVAAAKVFKEAGLEDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEK-G 360
Query: 351 WSLSLATIARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIV 410
W+L+L +ARIW+ GCIIR+ L+ I K+ +P +LL P ++++ + + RR+V
Sbjct: 361 WNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVV 420
Query: 411 VTCTENGYPVPSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQK 470
G P +SA+L+YFDT+ R ANL+QAQRD+FG+H ++R D+ H W K
Sbjct: 421 SLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTK 480
Query: 471 VSTES 475
++ +S
Sbjct: 481 LARKS 485
>gnl|CDD|181980 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein;
Reviewed.
Length = 301
Score = 224 bits (573), Expect = 5e-59
Identities = 90/253 (35%), Positives = 148/253 (58%), Gaps = 19/253 (7%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60
M+ +G+IGLG MG N++ +L G + Y+++ E + ++ +LE
Sbjct: 1 MQ---LGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEE------GATGADSLE 51
Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120
++V + PR + +MV G+ D ID+L PLLSP DI++DGGNS++ D R+ L+EK
Sbjct: 52 ELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK 111
Query: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
GI+F+ +G SGGV G G LM+GG+++A R+E I +++ + ++ GP G+G
Sbjct: 112 GIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG--YLHAGPVGAG 169
Query: 181 HFVKMIHNGIEYANMQLIADIYGILRDS-LNKNPLEISHLFSKWDTGK-LSSYLIKITAE 238
HFVKM+HNGIEY MQ A+ + +L S + + ++ + W G + S+L+ +TA+
Sbjct: 170 HFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV---WRRGSVIRSWLLDLTAD 226
Query: 239 ILSSS---DTITG 248
L+ D I+G
Sbjct: 227 ALAEDPKLDEISG 239
Score = 41.3 bits (98), Expect = 5e-04
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 347 EKYSWSLSLATIARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSI---SEKVKKTI 403
E + L LA +A +WR G +IRS +L+ +L EDP L I S + + T
Sbjct: 195 EASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDP---KLDEISGYVEDSGEGRWT- 250
Query: 404 PSLRRIVVTCTENGYPVPSLSAAL-SYF-----DTFIHDRGTANLIQAQRDFFGSHGFDR 457
V + P P ++AAL F D+F ++ A R+ FG H +
Sbjct: 251 ------VEEAIDLAVPAPVIAAALFMRFRSRQEDSF-----ADKVVAALRNGFGGHAVKK 299
Query: 458 KD 459
K+
Sbjct: 300 KE 301
>gnl|CDD|183555 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein;
Reviewed.
Length = 299
Score = 192 bits (489), Expect = 2e-49
Identities = 98/300 (32%), Positives = 160/300 (53%), Gaps = 19/300 (6%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
+G+IGLG MG N++ + + G + Y+ + E DV + +LE++V
Sbjct: 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDV------AGKLGITARHSLEELVSK 56
Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125
+ PR I +MV G+ + +I L PLLSP DI++DGGNS + D R+ +L+E+GI+++
Sbjct: 57 LEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116
Query: 126 GIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKM 185
G SGGV G R+G LMVGG+++ Y+R+E + +++ + P GP GSGHF+KM
Sbjct: 117 DCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPE---GPGYVHAGPVGSGHFLKM 173
Query: 186 IHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGK-LSSYLIKITAEILSSSD 244
+HNGIEY MQ A+ +L S +E + W G + S+L+ +T + L+
Sbjct: 174 VHNGIEYGMMQAYAEGLELLDKSDFDFDVE--DVARLWRNGSVIRSWLLDLTVKALAEDP 231
Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE-SKKMQS 303
+ G I + G G ++ E +L+ + + ++F R S D K+ S
Sbjct: 232 KLAG------IKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVS 285
Score = 54.4 bits (131), Expect = 6e-08
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 319 FVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQILNDIVK 378
F+K + N + + ++ +G ++ +K + + +AR+WR G +IRS +L+ VK
Sbjct: 170 FLKMVHNGIEYGMMQAYAEGLELL----DKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK 225
Query: 379 SLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL-SYFDTFIHDR 437
+L EDP + + S + + T V E P ++A+L F + D
Sbjct: 226 ALAEDPKLAGIKGYVNDSGEGRWT-------VEEAIELAVAAPVIAASLFMRFASQEDDS 278
Query: 438 GTANLIQAQRDFFGSHGFDRK 458
++ A R+ FG H K
Sbjct: 279 FHMKVVSALRNQFGGHAVKTK 299
>gnl|CDD|162080 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase
(decarboxylating). This family resembles a larger
family (gnd) of bacterial and eukaryotic
6-phosphogluconate dehydrogenases but differs from it by
a deep split in a UPGMA similarity clustering tree and
the lack of a central region of about 140 residues.
Among complete genomes, it is found is found in Bacillus
subtilis and Mycobacterium tuberculosis, both of which
also contain gnd, and in Aquifex aeolicus. The protein
from Methylobacillus flagellatus KT has been
characterized as a decarboxylating 6-phosphogluconate
dehydrogenase as part of an unusual formaldehyde
oxidation cycle. In some sequenced organisms members of
this family are the sole 6-phosphogluconate
dehydrogenase present and are probably active in the
pentose phosphate cycle.
Length = 298
Score = 164 bits (416), Expect = 5e-41
Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 19/292 (6%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
+G+IGLG MG+N+ + +G Y+ D + + + NL ++ +
Sbjct: 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRT------TGVANLRELSQR 56
Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125
+ PR + +MV G VD ++++L P L DI++DGGNS++ D+ R L EKGI+ +
Sbjct: 57 LSAPRVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLL 115
Query: 126 GIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKM 185
G SGGV G G M+GG+ +A+ R E + ++ + Q GP GSGHFVKM
Sbjct: 116 DCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQGY---LYCGPCGSGHFVKM 172
Query: 186 IHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGK-LSSYLIKITAEILSSSD 244
+HNGIEY M IA+ + ILR+S + +I + W G + S+L+ +TA S
Sbjct: 173 VHNGIEYGMMAAIAEGFEILRNS--QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRES- 229
Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRD 296
P + + S G G ++I L + T++ +R S D
Sbjct: 230 -----PDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLD 276
Score = 46.8 bits (111), Expect = 1e-05
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 319 FVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQILNDIVK 378
FVK + N + + + +GF ++ S + + +AR+WR G +IRS +L+
Sbjct: 169 FVKMVHNGIEYGMMAAIAEGFEILRNSQFDFD----IPEVARVWRRGSVIRSWLLDLTAI 224
Query: 379 SLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL-SYFDTFIHDR 437
+ E P S S + + T V+ + G P P ++ +L S F + D
Sbjct: 225 AFRESPDLAEFSGRVSDSGEGRWT-------VIAAIDLGVPAPVIATSLQSRFASRDLDD 277
Query: 438 GTANLIQAQRDFFGSHGFDRK 458
++ A R FG H +K
Sbjct: 278 FANKVLAALRKEFGGHAEKKK 298
>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase.
This model represents 2-hydroxy-3-oxopropionate
reductase (EC 1.1.1.60), also called tartronate
semialdehyde reductase. It follows glyoxylate
carboligase and precedes glycerate kinase in D-glycerate
pathway of glyoxylate degradation. The eventual product,
3-phosphoglycerate, is an intermediate of glycolysis and
is readily metabolized. Tartronic semialdehyde, the
substrate of this enzyme, may also come from other
pathways, such as D-glucarate catabolism.
Length = 291
Score = 59.5 bits (144), Expect = 2e-09
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 19/199 (9%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
+G IGLG MGS +S+N+ G++L V E+ D L+ + + Q+ E
Sbjct: 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL------LAAGAVTAETARQVTEQ 55
Query: 66 VCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGI 122
I MV D V+++ + + P L+D + +++ + + EKGI
Sbjct: 56 A---DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112
Query: 123 YFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGH 181
++ VSGG GA G S+MVGG++ ++RV+ L K L+G +G G
Sbjct: 113 DYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKP-LFEALGK-----NIVLVGGNGDGQ 166
Query: 182 FVKMIHNGIEYANMQLIAD 200
K+ + I N++ +++
Sbjct: 167 TCKVANQIIVALNIEAVSE 185
>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional.
Length = 296
Score = 56.2 bits (136), Expect = 2e-08
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 39/195 (20%)
Query: 5 DIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIK--KISGLSQK-------VIV 55
+G IGLG MG +S N+L G+ L VY+++ E I + + K VI+
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVII 63
Query: 56 T--KNLEQMVEAVCKPRKILMMVTDGDPVDQLID--KLKPLLSPEDILLDGGNSHFCDTQ 111
T N + E I+ G V ID + PL S E
Sbjct: 64 TMLPNSPHVKEVALGENGIIEGAKPGTVV---IDMSSIAPLASRE--------------- 105
Query: 112 IRSLQLSEKGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPC 170
+ L KGI + VSGG A G S+MVGG++ +++ +++ +++
Sbjct: 106 -IAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS------ 158
Query: 171 CALLGPDGSGHFVKM 185
G G+G+ K+
Sbjct: 159 VVHTGDIGAGNVTKL 173
>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase. This enzyme
belongs to the 3-hydroxyacid dehydrogenase family,
sharing a common evolutionary origin and enzymatic
mechanism with 6-phosphogluconate. HIBADH exhibits
sequence similarity to the NAD binding domain of
6-phosphogluconate dehydrogenase above trusted
(pfam03446).
Length = 288
Score = 50.2 bits (120), Expect = 1e-06
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 9 IGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMV----E 64
IGLG+MG ++ N+L G + V+ D+F + Q E
Sbjct: 2 IGLGNMGGPMAANLLKAGHPVRVF-------DLFPDAVEEAVA------AGAQAAASPAE 48
Query: 65 AVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKG 121
A +++ M+ G V + + + P ++ +L+D + + + G
Sbjct: 49 AAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG 108
Query: 122 IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
F+ VSGGV GAR+G + MVGG + + E +L + +N C G G+G
Sbjct: 109 AVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG---RNIVHC---GDHGAG 162
Query: 181 HFVKMIHN 188
K+ +N
Sbjct: 163 QAAKICNN 170
>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional.
Length = 292
Score = 48.9 bits (116), Expect = 3e-06
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 22/200 (11%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
+G IGLG MG+ +++N+ G +L V T + LS + + Q+ EA
Sbjct: 3 LGFIGLGIMGTPMAINLARAGHQLHV-------TTIGPVADELLSLGAVSVETARQVTEA 55
Query: 66 VCKPRKILMMVTDGDPVDQLI----DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKG 121
I +MV D V++++ K L + ++D + +T+ + Q++E G
Sbjct: 56 ---SDIIFIMVPDTPQVEEVLFGENGCTKASLKGK-TIVDMSSISPIETKRFARQVNELG 111
Query: 122 IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180
++ VSGG GAR G S+MVGG+E + RV+ L + K L+G +G G
Sbjct: 112 GDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKP-LFELLGKN-----ITLVGGNGDG 165
Query: 181 HFVKMIHNGIEYANMQLIAD 200
K+ + I N++ +++
Sbjct: 166 QTCKVANQIIVALNIEAVSE 185
>gnl|CDD|178449 PLN02858, PLN02858, fructose-bisphosphate aldolase.
Length = 1378
Score = 45.2 bits (107), Expect = 4e-05
Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 32/205 (15%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQK--VIVTKNLEQMV 63
IG IGLG+MG ++ ++L F + Y+ ++ T V + GL+ V K+++ +V
Sbjct: 327 IGFIGLGAMGFGMASHLLKSNFSVCGYDV-YKPTLVRFENAGGLAGNSPAEVAKDVDVLV 385
Query: 64 EAVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPE-DILLDGGNSHFCDTQI-RSLQLS 118
+MV + + ++ L I+L S Q+ R L+
Sbjct: 386 ----------IMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENE 435
Query: 119 EKGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPD 177
+ I + VSGGVK A G ++M G ++A ++L ++S K + G
Sbjct: 436 GRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY-----VIKGGC 490
Query: 178 GSGHFVKMIHNGIEYANMQLIADIY 202
G+G VKM++ QL+A ++
Sbjct: 491 GAGSGVKMVN--------QLLAGVH 507
Score = 34.8 bits (80), Expect = 0.045
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 28/208 (13%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65
+G +GL S+ L+ ++L GF++ + L + F ++ G + EA
Sbjct: 7 VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-ELGGHR--------CDSPAEA 57
Query: 66 VCKPRKILMMVTDGDPVDQLI----DKLKPLLSPEDILLDGGNSHFCDTQIRSL--QLSE 119
++++++ D VD + K L IL+ S Q++ L +L+E
Sbjct: 58 AKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI---RSTILPLQLQKLEKKLTE 114
Query: 120 KG--IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176
+ I+ + VS G+ +G ++ G A R + L ++ K G
Sbjct: 115 RKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY-----TFEGE 169
Query: 177 DGSGHFVKMIHNGIEYANMQLIADIYGI 204
G+G VKM++ +E + L+A +
Sbjct: 170 IGAGSKVKMVNELLE--GIHLVASAEAM 195
>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate
dehydrogenase; Provisional.
Length = 296
Score = 44.8 bits (106), Expect = 4e-05
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMV 63
A I IGLG MGS ++ N+L +G +L V++ + + D + K + +
Sbjct: 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASP---------A 52
Query: 64 EAVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120
+A ++ M+ +GD V ++ + + LS + +++D H T + K
Sbjct: 53 QAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAK 112
Query: 121 GIYFIGIGVSGGVKGARSGASLMV-GGNEKAYNRVENILLSISAKYQNSPCCALLGPDGS 179
G + + V A +G L++ GG + R IL+++ + N+ G G
Sbjct: 113 GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA------GGPGM 166
Query: 180 GHFVKMIHN 188
G VK+I+N
Sbjct: 167 GIRVKLINN 175
>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated.
Length = 273
Score = 33.4 bits (77), Expect = 0.12
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 22/103 (21%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQK---VIVTKNLEQM 62
IG IG G+MG+ L L+ G AV +T+ K + ++ + V K +E++
Sbjct: 3 IGFIGTGNMGTILIEAFLESG---AVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEV 59
Query: 63 VEA-----VC-KPRKILMMVTDGDPVDQLIDKLKPLLSPEDIL 99
+ +C KP I L+ KL P L+ E L
Sbjct: 60 ISQSDLIFICVKPLDI----------YPLLQKLAPHLTDEHCL 92
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes the aerobic cobalamin pathway Pseudomonas
denitrificans CobT gene product, which is a cobalt
chelatase subunit, with a MW ~70 kDa. The aerobic
pathway cobalt chelatase is a heterotrimeric,
ATP-dependent enzyme that catalyzes cobalt insertion
during cobalamin biosynthesis. The other two subunits
are the P. denitrificans CobS (TIGR01650) and CobN
(pfam02514 CobN/Magnesium Chelatase) proteins. To avoid
potential confusion with the nonhomologous Salmonella
typhimurium/E.coli cobT gene product, the P.
denitrificans gene symbol is not used in the name of
this model.
Length = 600
Score = 31.5 bits (71), Expect = 0.56
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 70 RKILMMVTDGDPVD 83
R+ILMM++DG PVD
Sbjct: 516 RRILMMISDGAPVD 529
>gnl|CDD|150533 pfam09873, DUF2100, Uncharacterized protein conserved in archaea
(DUF2100). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 215
Score = 31.3 bits (71), Expect = 0.56
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 44 KKISGLSQKV-IVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDK-LKPL-----LSPE 96
K + G+ +K I +E+++ + P KI+++V +GD D+L+ K K L L+ E
Sbjct: 154 KALEGIEKKCEIARNQIERVIRKI-NPSKIVVVVEEGDRADELLYKRAKELYNAEKLNSE 212
Query: 97 DIL 99
DIL
Sbjct: 213 DIL 215
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 31.1 bits (70), Expect = 0.66
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 54 IVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGG 103
++ K L+ +V AV P+K + G V I ++ LL DILL GG
Sbjct: 175 LMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGG 224
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 30.8 bits (70), Expect = 0.70
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 5 DIGIIGLGSMGSNLSLNILDKGFR-LAVYNKDFELTDVFIKKISGL----SQKVIVTKNL 59
D+ IIGLG GS L+ +L + +A+ K T+ F K GL +QK L
Sbjct: 3 DVAIIGLGPAGSALA-RLLAGKMKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGL 61
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 30.4 bits (68), Expect = 1.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 54 IVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHF 107
++ K L+ +V AV P++ + G V I ++ LL DILL GG F
Sbjct: 250 LLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIF 303
>gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 29.4 bits (66), Expect = 2.1
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDF------ELTDVFIKKISGLSQKVI 54
M+ D+ IIG G +G L+ + + R+AV EL DV + +S S+ ++
Sbjct: 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHIL 61
Query: 55 VTKNLEQMVEA 65
Q +EA
Sbjct: 62 RNLGAWQGIEA 72
>gnl|CDD|148881 pfam07520, SrfB, Virulence factor SrfB. This family includes
homologues of SsrAB is a two-component regulatory system
encoded within the Salmonella pathogenicity island
SPI-2. Among the products of genes activated by SsrAB
within epithelial and macrophage cells is SrfB.
Homologues are found in several other proteobacteria.
Length = 999
Score = 28.9 bits (65), Expect = 2.9
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 58 NLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFC 108
NL ++ ++ ++ DP+ Q I P D++LD GNS C
Sbjct: 221 NLLDLLGNQLSVPEVKIVDNTSDPIVQAI--------PVDLVLDVGNSRTC 263
>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase;
Validated.
Length = 282
Score = 28.8 bits (65), Expect = 2.9
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 9/59 (15%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVE 64
IG+IG G+MG+ ++ G+ + + +++D + + GL+ +TK+L+++V+
Sbjct: 6 IGVIGAGTMGNGIAQVCAVAGYDVVMV----DISDAAVDR--GLA---TITKSLDRLVK 55
>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated.
Length = 275
Score = 28.7 bits (65), Expect = 3.0
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35
MK IGIIGLG MG +L L + +KG VY D
Sbjct: 1 MK---IGIIGLGLMGGSLGLALKEKGLISKVYGYD 32
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 28.7 bits (64), Expect = 3.1
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 207 DSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSDTIT 247
D + K+ L LF GK SY ++ I
Sbjct: 457 DLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKID 497
>gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Length = 433
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVI 54
I I+GLG G ++ + KG + V + L++ +
Sbjct: 2 ILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSV 50
>gnl|CDD|181519 PRK08644, PRK08644, thiamine biosynthesis protein ThiF;
Provisional.
Length = 212
Score = 28.7 bits (65), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 KQADIGIIGLGSMGSNLSLNILDKGFR 28
K+A +GI G G +GSN+++ + G
Sbjct: 27 KKAKVGIAGAGGLGSNIAVALARSGVG 53
>gnl|CDD|183961 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed.
Length = 265
Score = 28.4 bits (64), Expect = 3.7
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 6 IGIIGLGSMGSNLSLNILDKGFR---LAVYNKDFELTDVFIKKISGLSQKV--IVTKNLE 60
IGI+G G++ S ++ IL A Y+++ E K L+ K +++
Sbjct: 4 IGIVGCGAIASLITKAILSGRINAELYAFYDRNLE-------KAENLASKTGAKACLSID 56
Query: 61 QMVEAV 66
++VE V
Sbjct: 57 ELVEDV 62
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 28.3 bits (63), Expect = 4.5
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 2 KQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35
++ D+GIIG G G ++N +++G ++ ++ D
Sbjct: 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148
>gnl|CDD|168201 PRK05714, PRK05714,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 405
Score = 27.9 bits (62), Expect = 5.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYN------KDFELTDVFIKKISGLS 50
+AD+ I+G G +GS L+L + G + + + K F+ F ++S LS
Sbjct: 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALS 55
>gnl|CDD|131875 TIGR02828, TIGR02828, putative membrane fusion protein. Members of
this family show similarity to the members of TIGR00999,
the membrane fusion protein (MFP) cluster 2 family,
which is linked to RND transport systems.
Length = 188
Score = 27.9 bits (62), Expect = 6.6
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 49 LSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLS--PEDILLD 101
L+ + + E+ ++ V +G P+ +++D L +L D L +
Sbjct: 15 LTPENVAGLGPEKFSTLPYPDTRVDGPVEEGQPLFKIVDNLSLMLLVISADSLSE 69
>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family
2. Members of the HesA/MoeB/ThiF family of proteins
(pfam00899) include a number of members encoded in the
midst of thiamine biosynthetic operons. This mix of
known and putative ThiF proteins shows a deep split in
phylogenetic trees, with one the E. coli ThiF and the
E. coli MoeB proteins seemingly more closely related
than E. coli ThiF and Campylobacter (for example) ThiF.
This model represents the divergent clade of putative
ThiF proteins such found in Campylobacter.
Length = 200
Score = 27.5 bits (61), Expect = 7.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 1 MKQADIGIIGLGSMGSNLSLNILDKG 26
++QA + I GLG +GSN+++N+ G
Sbjct: 19 LEQATVAICGLGGLGSNVAINLARAG 44
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 27.4 bits (60), Expect = 7.6
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 358 IARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENG 417
IAR G I ++ ++++ ED + +L P I K + IP + ++ T +NG
Sbjct: 301 IARAAENGETI-GELTARFIQAMHEDADALGVLR-PDIEPKATENIPQMIAMIETLIQNG 358
Query: 418 YPVPSLSAALSY 429
P+ + + Y
Sbjct: 359 KAYPAANGDVYY 370
>gnl|CDD|183060 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 27.5 bits (62), Expect = 7.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 1 MKQADIGIIGLGSMGS 16
+ D+ +IGLGSMGS
Sbjct: 1 TMRYDVIVIGLGSMGS 16
>gnl|CDD|152211 pfam11775, CobT_C, Cobalamin biosynthesis protein CobT VWA domain.
This family consists of several bacterial cobalamin
biosynthesis (CobT) proteins. CobT is involved in the
transformation of precorrin-3 into cobyrinic acid.
Length = 220
Score = 27.3 bits (60), Expect = 8.2
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 70 RKILMMVTDGDPVD 83
+KIL+M++DG P D
Sbjct: 136 KKILLMISDGAPCD 149
>gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional.
Length = 474
Score = 27.4 bits (61), Expect = 9.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 85 LIDKLKPLLSPEDIL 99
L DKL PLL +DI+
Sbjct: 113 LADKLLPLLKDDDII 127
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,541,692
Number of extensions: 481950
Number of successful extensions: 1089
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 49
Length of query: 475
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 378
Effective length of database: 3,898,497
Effective search space: 1473631866
Effective search space used: 1473631866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)