RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (475 letters) >gnl|CDD|181758 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated. Length = 459 Score = 604 bits (1561), Expect = e-173 Identities = 212/457 (46%), Positives = 300/457 (65%), Gaps = 4/457 (0%) Query: 14 MGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEAVCKPRKIL 73 MG NL+LNI G+ +AVYN+ E TD F+ + G +K++ LE+ V ++ KPRKIL Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE-EGKGKKIVPAYTLEEFVASLEKPRKIL 59 Query: 74 MMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFIGIGVSGGV 133 +MV G PVD +I++L PLL DI++DGGNS++ DT R +L+EKGI+FIG+GVSGG Sbjct: 60 LMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 Query: 134 KGARSGASLMVGGNEKAYNRVENILLSISAKYQN-SPCCALLGPDGSGHFVKMIHNGIEY 192 +GA G S+M GG ++AY V IL I+AK ++ PC +GPDG+GH+VKM+HNGIEY Sbjct: 120 EGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEY 179 Query: 193 ANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSDTITGMPII 252 +MQLIA+ Y +L+D L + EI+ +F++W+ G+L+SYLI+ITA+IL D TG P++ Sbjct: 180 GDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPLV 239 Query: 253 DVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQSFFN-PSSHF 311 DVI DKA QKGTG + L +T+ A+FAR LS +D+ + P++ F Sbjct: 240 DVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAAKF 299 Query: 312 PLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQ 371 F++D+ ALYAS I+S+ QGF ++ +SE+Y W L L IARIWR GCIIR+Q Sbjct: 300 EGD-KAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQ 358 Query: 372 ILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAALSYFD 431 L I + +P NLL P + +++ +LRR+V + G PVP+ S+ALSY+D Sbjct: 359 FLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYD 418 Query: 432 TFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPW 468 ++ R ANLIQAQRD+FG+H ++R DK H W Sbjct: 419 SYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEW 455 >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. Length = 467 Score = 519 bits (1340), Expect = e-148 Identities = 210/457 (45%), Positives = 298/457 (65%), Gaps = 3/457 (0%) Query: 5 DIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVE 64 DIG+IGL MGSNL+LN+ D GF ++VYN+ E TD F+ + +K++ ++E+ V+ Sbjct: 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE-HAKGKKIVGAYSIEEFVQ 59 Query: 65 AVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYF 124 ++ +PRKI++MV G PVD +I++L PLL DI++DGGNSH+ DT+ R +L KGI F Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119 Query: 125 IGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVK 184 +G GVSGG +GAR G S+M GG+ +A+ V I I+AK PCC +GPDG+GH+VK Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVK 179 Query: 185 MIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSD 244 M+HNGIEY +MQLI + Y IL+D L + EI+ +F++W+ G+L SYLI+ITA+IL D Sbjct: 180 MVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD 239 Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQSF 304 G P++D I D A QKGTG + I L +T+ ++FAR LS ++E Sbjct: 240 E-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKV 298 Query: 305 F-NPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWR 363 P + P + F++D+ ALYAS I+S+ QGF ++ ++SE+Y W L+L IA IWR Sbjct: 299 LSGPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWR 358 Query: 364 AGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSL 423 GCIIRS L+ I K+ E+P NLL P + +K RR+V E G PVP+ Sbjct: 359 GGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGIPVPAF 418 Query: 424 SAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDK 460 SAALS++D + R ANL+QAQRD+FG+H ++R DK Sbjct: 419 SAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDK 455 >gnl|CDD|185475 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional. Length = 470 Score = 482 bits (1242), Expect = e-136 Identities = 198/470 (42%), Positives = 307/470 (65%), Gaps = 3/470 (0%) Query: 3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQM 62 +DIG+IGL MG NL+LNI +GF+++VYN+ +E T+ F+KK + +V LE++ Sbjct: 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL 60 Query: 63 VEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGI 122 V ++ KPRK+++++ G+ VD+ ID L PLL DI++DGGN + +T+ R + EKGI Sbjct: 61 VNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGI 120 Query: 123 YFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHF 182 ++G+GVSGG +GAR G SLM GGN++AY+ V++IL SAK +SPC +GP SGH+ Sbjct: 121 LYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHY 180 Query: 183 VKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSS 242 VKM+HNGIEY +MQLI++ Y +++ L + E+S +F+KW+ G L+SYLI+ITA+IL+ Sbjct: 181 VKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK 240 Query: 243 SDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKKMQ 302 D + ++D I D A KGTG ++ E + + ++ ARN+S ++E K Sbjct: 241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKAS 300 Query: 303 SFF---NPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIA 359 S NP++ + F+ DL+NALY S I+S+TQGF++I ++S+++ W+L+L IA Sbjct: 301 SHLAGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIA 360 Query: 360 RIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419 RIWR GCIIR+ L+ I + ++P L P ++++K PS R++V T+NG P Sbjct: 361 RIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATKNGIP 420 Query: 420 VPSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQ 469 P+ SA+L+Y+ + ANL+QAQRD+FG+H + R D+ H W+ Sbjct: 421 TPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 >gnl|CDD|177984 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating). Length = 493 Score = 399 bits (1027), Expect = e-112 Identities = 184/485 (37%), Positives = 288/485 (59%), Gaps = 13/485 (2%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFI---KKISGLSQKVIVTK 57 + IG+ GL MG NL+LNI +KGF ++VYN+ D + KK L + K Sbjct: 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNL--PLYGFK 61 Query: 58 NLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQL 117 + E V ++ KPR ++++V G PVDQ I L + P D ++DGGN + +T+ R + Sbjct: 62 DPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEA 121 Query: 118 SEKGIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPD 177 +EKG+ ++G+GVSGG +GAR+G SLM GG+ +AY +E+IL ++A+ + PC +GP Sbjct: 122 AEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG 181 Query: 178 GSGHFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITA 237 G+G+FVKM+HNGIEY +MQLI++ Y +L+ + E++ +F++W+ G+L S+LI+ITA Sbjct: 182 GAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITA 241 Query: 238 EILSSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE 297 +I S D ++D I DK KGTG ++ + +LS + ++ AR LS ++E Sbjct: 242 DIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEE 301 Query: 298 ----SKKMQSFFNPSSHFPLKCFDS--FVKDLENALYASTILSFTQGFWVI-GKSSEKYS 350 +K + D + D+ ALYAS I S+ QG +I KS EK Sbjct: 302 RVAAAKVFKEAGLEDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEK-G 360 Query: 351 WSLSLATIARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIV 410 W+L+L +ARIW+ GCIIR+ L+ I K+ +P +LL P ++++ + + RR+V Sbjct: 361 WNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVV 420 Query: 411 VTCTENGYPVPSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQK 470 G P +SA+L+YFDT+ R ANL+QAQRD+FG+H ++R D+ H W K Sbjct: 421 SLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTK 480 Query: 471 VSTES 475 ++ +S Sbjct: 481 LARKS 485 >gnl|CDD|181980 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed. Length = 301 Score = 224 bits (573), Expect = 5e-59 Identities = 90/253 (35%), Positives = 148/253 (58%), Gaps = 19/253 (7%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60 M+ +G+IGLG MG N++ +L G + Y+++ E + ++ +LE Sbjct: 1 MQ---LGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEE------GATGADSLE 51 Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120 ++V + PR + +MV G+ D ID+L PLLSP DI++DGGNS++ D R+ L+EK Sbjct: 52 ELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK 111 Query: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180 GI+F+ +G SGGV G G LM+GG+++A R+E I +++ + ++ GP G+G Sbjct: 112 GIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG--YLHAGPVGAG 169 Query: 181 HFVKMIHNGIEYANMQLIADIYGILRDS-LNKNPLEISHLFSKWDTGK-LSSYLIKITAE 238 HFVKM+HNGIEY MQ A+ + +L S + + ++ + W G + S+L+ +TA+ Sbjct: 170 HFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV---WRRGSVIRSWLLDLTAD 226 Query: 239 ILSSS---DTITG 248 L+ D I+G Sbjct: 227 ALAEDPKLDEISG 239 Score = 41.3 bits (98), Expect = 5e-04 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 24/122 (19%) Query: 347 EKYSWSLSLATIARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSI---SEKVKKTI 403 E + L LA +A +WR G +IRS +L+ +L EDP L I S + + T Sbjct: 195 EASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDP---KLDEISGYVEDSGEGRWT- 250 Query: 404 PSLRRIVVTCTENGYPVPSLSAAL-SYF-----DTFIHDRGTANLIQAQRDFFGSHGFDR 457 V + P P ++AAL F D+F ++ A R+ FG H + Sbjct: 251 ------VEEAIDLAVPAPVIAAALFMRFRSRQEDSF-----ADKVVAALRNGFGGHAVKK 299 Query: 458 KD 459 K+ Sbjct: 300 KE 301 >gnl|CDD|183555 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed. Length = 299 Score = 192 bits (489), Expect = 2e-49 Identities = 98/300 (32%), Positives = 160/300 (53%), Gaps = 19/300 (6%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 +G+IGLG MG N++ + + G + Y+ + E DV + +LE++V Sbjct: 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDV------AGKLGITARHSLEELVSK 56 Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125 + PR I +MV G+ + +I L PLLSP DI++DGGNS + D R+ +L+E+GI+++ Sbjct: 57 LEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYV 116 Query: 126 GIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKM 185 G SGGV G R+G LMVGG+++ Y+R+E + +++ + P GP GSGHF+KM Sbjct: 117 DCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPE---GPGYVHAGPVGSGHFLKM 173 Query: 186 IHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGK-LSSYLIKITAEILSSSD 244 +HNGIEY MQ A+ +L S +E + W G + S+L+ +T + L+ Sbjct: 174 VHNGIEYGMMQAYAEGLELLDKSDFDFDVE--DVARLWRNGSVIRSWLLDLTVKALAEDP 231 Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDE-SKKMQS 303 + G I + G G ++ E +L+ + + ++F R S D K+ S Sbjct: 232 KLAG------IKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVS 285 Score = 54.4 bits (131), Expect = 6e-08 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 12/141 (8%) Query: 319 FVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQILNDIVK 378 F+K + N + + ++ +G ++ +K + + +AR+WR G +IRS +L+ VK Sbjct: 170 FLKMVHNGIEYGMMQAYAEGLELL----DKSDFDFDVEDVARLWRNGSVIRSWLLDLTVK 225 Query: 379 SLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL-SYFDTFIHDR 437 +L EDP + + S + + T V E P ++A+L F + D Sbjct: 226 ALAEDPKLAGIKGYVNDSGEGRWT-------VEEAIELAVAAPVIAASLFMRFASQEDDS 278 Query: 438 GTANLIQAQRDFFGSHGFDRK 458 ++ A R+ FG H K Sbjct: 279 FHMKVVSALRNQFGGHAVKTK 299 >gnl|CDD|162080 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. Length = 298 Score = 164 bits (416), Expect = 5e-41 Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 19/292 (6%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 +G+IGLG MG+N+ + +G Y+ D + + + NL ++ + Sbjct: 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRT------TGVANLRELSQR 56 Query: 66 VCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGIYFI 125 + PR + +MV G VD ++++L P L DI++DGGNS++ D+ R L EKGI+ + Sbjct: 57 LSAPRVVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLL 115 Query: 126 GIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGHFVKM 185 G SGGV G G M+GG+ +A+ R E + ++ + Q GP GSGHFVKM Sbjct: 116 DCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQGY---LYCGPCGSGHFVKM 172 Query: 186 IHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGK-LSSYLIKITAEILSSSD 244 +HNGIEY M IA+ + ILR+S + +I + W G + S+L+ +TA S Sbjct: 173 VHNGIEYGMMAAIAEGFEILRNS--QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRES- 229 Query: 245 TITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRD 296 P + + S G G ++I L + T++ +R S D Sbjct: 230 -----PDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLD 276 Score = 46.8 bits (111), Expect = 1e-05 Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 12/141 (8%) Query: 319 FVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIARIWRAGCIIRSQILNDIVK 378 FVK + N + + + +GF ++ S + + +AR+WR G +IRS +L+ Sbjct: 169 FVKMVHNGIEYGMMAAIAEGFEILRNSQFDFD----IPEVARVWRRGSVIRSWLLDLTAI 224 Query: 379 SLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPVPSLSAAL-SYFDTFIHDR 437 + E P S S + + T V+ + G P P ++ +L S F + D Sbjct: 225 AFRESPDLAEFSGRVSDSGEGRWT-------VIAAIDLGVPAPVIATSLQSRFASRDLDD 277 Query: 438 GTANLIQAQRDFFGSHGFDRK 458 ++ A R FG H +K Sbjct: 278 FANKVLAALRKEFGGHAEKKK 298 >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 Score = 59.5 bits (144), Expect = 2e-09 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 19/199 (9%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 +G IGLG MGS +S+N+ G++L V E+ D L+ + + Q+ E Sbjct: 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL------LAAGAVTAETARQVTEQ 55 Query: 66 VCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKGI 122 I MV D V+++ + + P L+D + +++ + + EKGI Sbjct: 56 A---DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 Query: 123 YFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSGH 181 ++ VSGG GA G S+MVGG++ ++RV+ L K L+G +G G Sbjct: 113 DYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKP-LFEALGK-----NIVLVGGNGDGQ 166 Query: 182 FVKMIHNGIEYANMQLIAD 200 K+ + I N++ +++ Sbjct: 167 TCKVANQIIVALNIEAVSE 185 >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional. Length = 296 Score = 56.2 bits (136), Expect = 2e-08 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 39/195 (20%) Query: 5 DIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIK--KISGLSQK-------VIV 55 +G IGLG MG +S N+L G+ L VY+++ E I + + K VI+ Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVII 63 Query: 56 T--KNLEQMVEAVCKPRKILMMVTDGDPVDQLID--KLKPLLSPEDILLDGGNSHFCDTQ 111 T N + E I+ G V ID + PL S E Sbjct: 64 TMLPNSPHVKEVALGENGIIEGAKPGTVV---IDMSSIAPLASRE--------------- 105 Query: 112 IRSLQLSEKGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPC 170 + L KGI + VSGG A G S+MVGG++ +++ +++ +++ Sbjct: 106 -IAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS------ 158 Query: 171 CALLGPDGSGHFVKM 185 G G+G+ K+ Sbjct: 159 VVHTGDIGAGNVTKL 173 >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). Length = 288 Score = 50.2 bits (120), Expect = 1e-06 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 27/188 (14%) Query: 9 IGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMV----E 64 IGLG+MG ++ N+L G + V+ D+F + Q E Sbjct: 2 IGLGNMGGPMAANLLKAGHPVRVF-------DLFPDAVEEAVA------AGAQAAASPAE 48 Query: 65 AVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKG 121 A +++ M+ G V + + + P ++ +L+D + + + G Sbjct: 49 AAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG 108 Query: 122 IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180 F+ VSGGV GAR+G + MVGG + + E +L + +N C G G+G Sbjct: 109 AVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG---RNIVHC---GDHGAG 162 Query: 181 HFVKMIHN 188 K+ +N Sbjct: 163 QAAKICNN 170 >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional. Length = 292 Score = 48.9 bits (116), Expect = 3e-06 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 22/200 (11%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 +G IGLG MG+ +++N+ G +L V T + LS + + Q+ EA Sbjct: 3 LGFIGLGIMGTPMAINLARAGHQLHV-------TTIGPVADELLSLGAVSVETARQVTEA 55 Query: 66 VCKPRKILMMVTDGDPVDQLI----DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEKG 121 I +MV D V++++ K L + ++D + +T+ + Q++E G Sbjct: 56 ---SDIIFIMVPDTPQVEEVLFGENGCTKASLKGK-TIVDMSSISPIETKRFARQVNELG 111 Query: 122 IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180 ++ VSGG GAR G S+MVGG+E + RV+ L + K L+G +G G Sbjct: 112 GDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKP-LFELLGKN-----ITLVGGNGDG 165 Query: 181 HFVKMIHNGIEYANMQLIAD 200 K+ + I N++ +++ Sbjct: 166 QTCKVANQIIVALNIEAVSE 185 >gnl|CDD|178449 PLN02858, PLN02858, fructose-bisphosphate aldolase. Length = 1378 Score = 45.2 bits (107), Expect = 4e-05 Identities = 51/205 (24%), Positives = 91/205 (44%), Gaps = 32/205 (15%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQK--VIVTKNLEQMV 63 IG IGLG+MG ++ ++L F + Y+ ++ T V + GL+ V K+++ +V Sbjct: 327 IGFIGLGAMGFGMASHLLKSNFSVCGYDV-YKPTLVRFENAGGLAGNSPAEVAKDVDVLV 385 Query: 64 EAVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPE-DILLDGGNSHFCDTQI-RSLQLS 118 +MV + + ++ L I+L S Q+ R L+ Sbjct: 386 ----------IMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENE 435 Query: 119 EKGIYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPD 177 + I + VSGGVK A G ++M G ++A ++L ++S K + G Sbjct: 436 GRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY-----VIKGGC 490 Query: 178 GSGHFVKMIHNGIEYANMQLIADIY 202 G+G VKM++ QL+A ++ Sbjct: 491 GAGSGVKMVN--------QLLAGVH 507 Score = 34.8 bits (80), Expect = 0.045 Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 28/208 (13%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVEA 65 +G +GL S+ L+ ++L GF++ + L + F ++ G + EA Sbjct: 7 VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-ELGGHR--------CDSPAEA 57 Query: 66 VCKPRKILMMVTDGDPVDQLI----DKLKPLLSPEDILLDGGNSHFCDTQIRSL--QLSE 119 ++++++ D VD + K L IL+ S Q++ L +L+E Sbjct: 58 AKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI---RSTILPLQLQKLEKKLTE 114 Query: 120 KG--IYFIGIGVSGGVKGARSGA-SLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGP 176 + I+ + VS G+ +G ++ G A R + L ++ K G Sbjct: 115 RKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY-----TFEGE 169 Query: 177 DGSGHFVKMIHNGIEYANMQLIADIYGI 204 G+G VKM++ +E + L+A + Sbjct: 170 IGAGSKVKMVNELLE--GIHLVASAEAM 195 >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional. Length = 296 Score = 44.8 bits (106), Expect = 4e-05 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 19/189 (10%) Query: 4 ADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMV 63 A I IGLG MGS ++ N+L +G +L V++ + + D + K + + Sbjct: 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASP---------A 52 Query: 64 EAVCKPRKILMMVTDGDPVDQLI---DKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120 +A ++ M+ +GD V ++ + + LS + +++D H T + K Sbjct: 53 QAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAK 112 Query: 121 GIYFIGIGVSGGVKGARSGASLMV-GGNEKAYNRVENILLSISAKYQNSPCCALLGPDGS 179 G + + V A +G L++ GG + R IL+++ + N+ G G Sbjct: 113 GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA------GGPGM 166 Query: 180 GHFVKMIHN 188 G VK+I+N Sbjct: 167 GIRVKLINN 175 >gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated. Length = 273 Score = 33.4 bits (77), Expect = 0.12 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 22/103 (21%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQK---VIVTKNLEQM 62 IG IG G+MG+ L L+ G AV +T+ K + ++ + V K +E++ Sbjct: 3 IGFIGTGNMGTILIEAFLESG---AVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEV 59 Query: 63 VEA-----VC-KPRKILMMVTDGDPVDQLIDKLKPLLSPEDIL 99 + +C KP I L+ KL P L+ E L Sbjct: 60 ISQSDLIFICVKPLDI----------YPLLQKLAPHLTDEHCL 92 >gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model. Length = 600 Score = 31.5 bits (71), Expect = 0.56 Identities = 10/14 (71%), Positives = 13/14 (92%) Query: 70 RKILMMVTDGDPVD 83 R+ILMM++DG PVD Sbjct: 516 RRILMMISDGAPVD 529 >gnl|CDD|150533 pfam09873, DUF2100, Uncharacterized protein conserved in archaea (DUF2100). This domain, found in various hypothetical archaeal proteins, has no known function. Length = 215 Score = 31.3 bits (71), Expect = 0.56 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 8/63 (12%) Query: 44 KKISGLSQKV-IVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDK-LKPL-----LSPE 96 K + G+ +K I +E+++ + P KI+++V +GD D+L+ K K L L+ E Sbjct: 154 KALEGIEKKCEIARNQIERVIRKI-NPSKIVVVVEEGDRADELLYKRAKELYNAEKLNSE 212 Query: 97 DIL 99 DIL Sbjct: 213 DIL 215 >gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase. Length = 401 Score = 31.1 bits (70), Expect = 0.66 Identities = 18/50 (36%), Positives = 26/50 (52%) Query: 54 IVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGG 103 ++ K L+ +V AV P+K + G V I ++ LL DILL GG Sbjct: 175 LMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGG 224 >gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional. Length = 351 Score = 30.8 bits (70), Expect = 0.70 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%) Query: 5 DIGIIGLGSMGSNLSLNILDKGFR-LAVYNKDFELTDVFIKKISGL----SQKVIVTKNL 59 D+ IIGLG GS L+ +L + +A+ K T+ F K GL +QK L Sbjct: 3 DVAIIGLGPAGSALA-RLLAGKMKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGL 61 >gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional. Length = 481 Score = 30.4 bits (68), Expect = 1.0 Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 54 IVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHF 107 ++ K L+ +V AV P++ + G V I ++ LL DILL GG F Sbjct: 250 LLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIF 303 >gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated. Length = 405 Score = 29.4 bits (66), Expect = 2.1 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDF------ELTDVFIKKISGLSQKVI 54 M+ D+ IIG G +G L+ + + R+AV EL DV + +S S+ ++ Sbjct: 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHIL 61 Query: 55 VTKNLEQMVEA 65 Q +EA Sbjct: 62 RNLGAWQGIEA 72 >gnl|CDD|148881 pfam07520, SrfB, Virulence factor SrfB. This family includes homologues of SsrAB is a two-component regulatory system encoded within the Salmonella pathogenicity island SPI-2. Among the products of genes activated by SsrAB within epithelial and macrophage cells is SrfB. Homologues are found in several other proteobacteria. Length = 999 Score = 28.9 bits (65), Expect = 2.9 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 8/51 (15%) Query: 58 NLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFC 108 NL ++ ++ ++ DP+ Q I P D++LD GNS C Sbjct: 221 NLLDLLGNQLSVPEVKIVDNTSDPIVQAI--------PVDLVLDVGNSRTC 263 >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated. Length = 282 Score = 28.8 bits (65), Expect = 2.9 Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 9/59 (15%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLEQMVE 64 IG+IG G+MG+ ++ G+ + + +++D + + GL+ +TK+L+++V+ Sbjct: 6 IGVIGAGTMGNGIAQVCAVAGYDVVMV----DISDAAVDR--GLA---TITKSLDRLVK 55 >gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated. Length = 275 Score = 28.7 bits (65), Expect = 3.0 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35 MK IGIIGLG MG +L L + +KG VY D Sbjct: 1 MK---IGIIGLGLMGGSLGLALKEKGLISKVYGYD 32 >gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008 Score = 28.7 bits (64), Expect = 3.1 Identities = 10/41 (24%), Positives = 14/41 (34%) Query: 207 DSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSDTIT 247 D + K+ L LF GK SY ++ I Sbjct: 457 DLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKID 497 >gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase. Length = 433 Score = 28.8 bits (65), Expect = 3.1 Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 6 IGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVI 54 I I+GLG G ++ + KG + V + L++ + Sbjct: 2 ILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSV 50 >gnl|CDD|181519 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional. Length = 212 Score = 28.7 bits (65), Expect = 3.5 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 2 KQADIGIIGLGSMGSNLSLNILDKGFR 28 K+A +GI G G +GSN+++ + G Sbjct: 27 KKAKVGIAGAGGLGSNIAVALARSGVG 53 >gnl|CDD|183961 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed. Length = 265 Score = 28.4 bits (64), Expect = 3.7 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 12/66 (18%) Query: 6 IGIIGLGSMGSNLSLNILDKGFR---LAVYNKDFELTDVFIKKISGLSQKV--IVTKNLE 60 IGI+G G++ S ++ IL A Y+++ E K L+ K +++ Sbjct: 4 IGIVGCGAIASLITKAILSGRINAELYAFYDRNLE-------KAENLASKTGAKACLSID 56 Query: 61 QMVEAV 66 ++VE V Sbjct: 57 ELVEDV 62 >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional. Length = 659 Score = 28.3 bits (63), Expect = 4.5 Identities = 10/34 (29%), Positives = 22/34 (64%) Query: 2 KQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35 ++ D+GIIG G G ++N +++G ++ ++ D Sbjct: 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 >gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional. Length = 405 Score = 27.9 bits (62), Expect = 5.8 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Query: 3 QADIGIIGLGSMGSNLSLNILDKGFRLAVYN------KDFELTDVFIKKISGLS 50 +AD+ I+G G +GS L+L + G + + + K F+ F ++S LS Sbjct: 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALS 55 >gnl|CDD|131875 TIGR02828, TIGR02828, putative membrane fusion protein. Members of this family show similarity to the members of TIGR00999, the membrane fusion protein (MFP) cluster 2 family, which is linked to RND transport systems. Length = 188 Score = 27.9 bits (62), Expect = 6.6 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 49 LSQKVIVTKNLEQMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLS--PEDILLD 101 L+ + + E+ ++ V +G P+ +++D L +L D L + Sbjct: 15 LTPENVAGLGPEKFSTLPYPDTRVDGPVEEGQPLFKIVDNLSLMLLVISADSLSE 69 >gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. Length = 200 Score = 27.5 bits (61), Expect = 7.3 Identities = 11/26 (42%), Positives = 19/26 (73%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKG 26 ++QA + I GLG +GSN+++N+ G Sbjct: 19 LEQATVAICGLGGLGSNVAINLARAG 44 >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional. Length = 699 Score = 27.4 bits (60), Expect = 7.6 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 358 IARIWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENG 417 IAR G I ++ ++++ ED + +L P I K + IP + ++ T +NG Sbjct: 301 IARAAENGETI-GELTARFIQAMHEDADALGVLR-PDIEPKATENIPQMIAMIETLIQNG 358 Query: 418 YPVPSLSAALSY 429 P+ + + Y Sbjct: 359 KAYPAANGDVYY 370 >gnl|CDD|183060 PRK11259, solA, N-methyltryptophan oxidase; Provisional. Length = 376 Score = 27.5 bits (62), Expect = 7.7 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 1 MKQADIGIIGLGSMGS 16 + D+ +IGLGSMGS Sbjct: 1 TMRYDVIVIGLGSMGS 16 >gnl|CDD|152211 pfam11775, CobT_C, Cobalamin biosynthesis protein CobT VWA domain. This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 220 Score = 27.3 bits (60), Expect = 8.2 Identities = 8/14 (57%), Positives = 12/14 (85%) Query: 70 RKILMMVTDGDPVD 83 +KIL+M++DG P D Sbjct: 136 KKILLMISDGAPCD 149 >gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional. Length = 474 Score = 27.4 bits (61), Expect = 9.3 Identities = 9/15 (60%), Positives = 11/15 (73%) Query: 85 LIDKLKPLLSPEDIL 99 L DKL PLL +DI+ Sbjct: 113 LADKLLPLLKDDDII 127 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0693 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,541,692 Number of extensions: 481950 Number of successful extensions: 1089 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1065 Number of HSP's successfully gapped: 49 Length of query: 475 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 378 Effective length of database: 3,898,497 Effective search space: 1473631866 Effective search space used: 1473631866 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.6 bits)