BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (475 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/475 (100%), Positives = 475/475 (100%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE Sbjct: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60 Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK Sbjct: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDGGNSHFCDTQIRSLQLSEK 120 Query: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG Sbjct: 121 GIYFIGIGVSGGVKGARSGASLMVGGNEKAYNRVENILLSISAKYQNSPCCALLGPDGSG 180 Query: 181 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL 240 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL Sbjct: 181 HFVKMIHNGIEYANMQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEIL 240 Query: 241 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK 300 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK Sbjct: 241 SSSDTITGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTITETAIFARNLSLYRDESKK 300 Query: 301 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR Sbjct: 301 MQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYSWSLSLATIAR 360 Query: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV Sbjct: 361 IWRAGCIIRSQILNDIVKSLTEDPSSTNLLNIPSISEKVKKTIPSLRRIVVTCTENGYPV 420 Query: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTES 475 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTES Sbjct: 421 PSLSAALSYFDTFIHDRGTANLIQAQRDFFGSHGFDRKDKISEPHGPWQKVSTES 475 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 26.6 bits (57), Expect = 0.88, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60 M D+ IIG G GS ++ KGF A+ + L D+ + G + N+ Sbjct: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60 Query: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDG 102 ++ + +P +V D D+LI + +I LD Sbjct: 61 DFLQDIAEPVSSFRLV---DITDRLITAPDAIFHSSEIGLDA 99 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKD 35 MK+ IGIIG G + LS++ GF + + D Sbjct: 1 MKKKTIGIIGGGQLARMLSMSAARLGFCTVILDPD 35 >gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 25.4 bits (54), Expect = 1.9, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 21/31 (67%) Query: 389 LLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419 L ++ S ++++ + IP+++ VVT TEN P Sbjct: 55 LQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85 >gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 25.4 bits (54), Expect = 1.9, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 21/31 (67%) Query: 389 LLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419 L ++ S ++++ + IP+++ VVT TEN P Sbjct: 55 LQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85 >gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 17/24 (70%) Query: 396 SEKVKKTIPSLRRIVVTCTENGYP 419 ++++ + IP+++ VVT TEN P Sbjct: 62 AQQIIQNIPTVKNAVVTLTENKNP 85 >gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 8/70 (11%) Query: 226 GKLSSYLIKITAEILSSSDTI----TGMPIIDVICDKASQKGTGIRSIIEGHKLSSSMTI 281 GKL + + ++++ S D+I G P+ID I + ++ + + EG KL I Sbjct: 211 GKLGTLFV-CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKG--II 267 Query: 282 TETAIFARNL 291 TE IF RN Sbjct: 268 TEGDIF-RNF 276 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 86 IDKLKPLLSPEDILLDGGN----SHFCDTQIRSLQLSEKGIY 123 I ++ + P D L D +H T + S Q+SEKGIY Sbjct: 309 ITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIY 350 >gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 349 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%) Query: 294 YRDESKKMQSFFNPSSHFPLKCFDSFVKDLENALYASTILSFTQGFWVIGKSSEKYS--W 351 + ++ K M+SFF + K L N + A IL FT F+ G S Sbjct: 71 FSEDEKDMRSFFCAAPW--KKILTVLAGPLANCVMA--ILFFTFFFYNTGVMKPVVSNVS 126 Query: 352 SLSLATIARIWRAGCII-----RSQILNDIVKSLTEDPSSTNLLNIPSISEKVK----KT 402 S A IA + + CII ++ + E+P + +++ E V K Sbjct: 127 PASPAAIAGVKKGDCIISLDGITVSAFEEVAPYVRENP--LHEISLVLYREHVGVLHLKV 184 Query: 403 IPSLRRIVVTCTENGYP--VPSLSAALSYFDTFIH--------DRGTANLIQAQRDFFG- 451 +P L+ T G VPS+ + SY +T +H RG + R F G Sbjct: 185 MPRLQD---TVDRFGIKRQVPSVGISFSYDETKLHSRTVLQSFSRGLDEISSITRGFLGV 241 Query: 452 -SHGFDRKDKISEPHGP 467 S F + ++++ GP Sbjct: 242 LSSAFGKDTRLNQISGP 258 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 23.9 bits (50), Expect = 5.4, Method: Compositional matrix adjust. Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 157 ILLSISAKYQNSPCCALLGPDGSG 180 I+ ++ K + S A++GP+GSG Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSG 41 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 23.9 bits (50), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 195 MQLIADIYGILRDSLNKNPLEISHLFSKWDTGKLSSYLIKITAEILSSSDTITGMP 250 MQL++ L D++ + ++I H+ KW G ++ + A S D I G+P Sbjct: 145 MQLVSPT-TCLYDTVKEEKIDIEHVIKKW--GIPPEKMVCLQALTGDSIDNIPGIP 197 >gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 246 ITGMPIIDVICDKASQKGT 264 ITG+P I VIC+ + GT Sbjct: 159 ITGLPPIAVICELVNDDGT 177 >gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 413 Score = 23.5 bits (49), Expect = 8.5, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Query: 214 LEISHLFSKWDTGKLSS----YLIKITAEILSSSD 244 L I H WD GK+ S Y++K +I S D Sbjct: 211 LSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPD 245 >gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter asiaticus str. psy62] Length = 347 Score = 23.1 bits (48), Expect = 9.5, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%) Query: 323 LENALYASTILSFTQGFW---VIGKSSEKYSWSLSLATIARIWRAGCI-----IRSQILN 374 L + LY S L+ G W + + + LSL WR I + N Sbjct: 89 LHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAAN 148 Query: 375 DIVKSLTEDPSSTNLLNIPSISEKVKKTIPS 405 ++KSL E P + I S + TI S Sbjct: 149 ALLKSLEEPPQKVLFILISHASPTILSTIRS 179 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 306,340 Number of Sequences: 1233 Number of extensions: 12907 Number of successful extensions: 61 Number of sequences better than 100.0: 20 Number of HSP's better than 100.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 20 length of query: 475 length of database: 328,796 effective HSP length: 77 effective length of query: 398 effective length of database: 233,855 effective search space: 93074290 effective search space used: 93074290 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)