HHsearch alignment for GI: 254780717 and conserved domain: cd01016
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=466.68 Aligned_cols=264 Identities=20% Similarity=0.313 Sum_probs=235.8
Q ss_pred CEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 80599972289999999707944178870589983533568024566502578999676610356899973145576799
Q gi|254780717|r 23 SLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVT 102 (294)
Q Consensus 23 ~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~~i~ 102 (294)
T Consensus 1 kP~Vvtt~~pl~~iv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~ADlii~~G~~lE~~~~~~~~~~~~~~~v~~ 80 (276)
T cd01016 1 KPNVVTTTGMIADAVENIGGDHVEVTGLMGPGVDPHLYKATAGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIA 80 (276)
T ss_pred CCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 99899968099999999808816999802889896468799999999967999998488631789999985458984797
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 75135446210012111233212247567765555678999999997421865658899899998631222358999850
Q gi|254780717|r 103 LSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSIL 182 (294)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 182 (294)
T Consensus 81 ~~~~~~~------~~~~~~~~~~~~DPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~Ld~~~~~~l 154 (276)
T cd01016 81 LEDTLDR------SQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKI 154 (276)
T ss_pred EECCCCC------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0246674------4456555689999864479999999999999999986831289999999999999999999999986
Q ss_pred C--CCCCCEEEECCCHHHHHHHHCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 3--0027814620621577898749812003-467754449788999999997549938998188897899999997199
Q gi|254780717|r 183 Q--PVEKKKIIVFHEAYRYFASHYNLSIVTF-PMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGV 259 (294)
Q Consensus 183 ~--~~~~~~~i~~H~a~~Yf~~~~gl~~~~~-~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~ 259 (294)
T Consensus 155 ~~~p~~~r~~vt~H~Af~Yfa~~ygl~~~~~~~~~~~~epsp~~l~~li~~ik~~~v~~If~E~~~~~k~~~~i~~~~~a 234 (276)
T cd01016 155 AEIPEQQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVESSVNQKSIEALQDAVKA 234 (276)
T ss_pred HCCCCCCEEEEEECCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 22555560899846406779986698273142468888889799999999999839999998489995999999999833
Q ss_pred CEEEEC--------CCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 089980--------5336787781678999999999998741
Q gi|254780717|r 260 MSAILD--------PEGMLIAEGPELYFQLMRSMSNSIAKNC 293 (294)
Q Consensus 260 ~~~~ld--------~~~~~~~~~~~~Y~~~m~~n~~~l~k~l 293 (294)
T Consensus 235 ~~~~~~~~~~l~~d~~~~~~-~~~~tY~~~M~~N~~~l~eaL 275 (276)
T cd01016 235 RGHDVQIGGELYSDAMGEEG-TSEGTYIGMFKHNVDTIVEAL 275 (276)
T ss_pred CCCEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 57424316712323678889-987778999999999999972