HHsearch alignment for GI: 254780717 and conserved domain: cd01017
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=479.90 Aligned_cols=273 Identities=26% Similarity=0.429 Sum_probs=247.2
Q ss_pred CCCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC-CCC
Q ss_conf 3880599972289999999707944178870589983533568024566502578999676610356899973145-576
Q gi|254780717|r 21 AGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNK-QSN 99 (294)
Q Consensus 21 ~~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~-~~~ 99 (294)
T Consensus 1 sgki~Vv~S~~p~~~lv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~Adli~~nG~~lE~~l~~~~~~~~~~~~~ 80 (282)
T cd01017 1 SGKLKVVTTFYPLYEFTKAIGGDKADVKLIIPAGTEPHDFEPSPKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLK 80 (282)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf 99828999888999999998199448998159897963675899999999669999991878368999999853689977
Q ss_pred EEEEEECCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7997513544621---0012111233212247567765555678999999997421865658899899998631222358
Q gi|254780717|r 100 VVTLSHSPDLHRI---LLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDK 176 (294)
Q Consensus 100 ~i~~~~~~~~~~~---~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~ 176 (294)
T Consensus 81 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~ 160 (282)
T cd01017 81 VVEASKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVLAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQ 160 (282)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99877895235567765555555445579999825578155999999999999986844179999999999999999999
Q ss_pred HHHHHCCCCCCCEEEECCCHHHHHHHHCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 99985030027814620621577898749812003-46775444978899999999754993899818889789999999
Q gi|254780717|r 177 ELHSILQPVEKKKIIVFHEAYRYFASHYNLSIVTF-PMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITN 255 (294)
Q Consensus 177 ~~~~~~~~~~~~~~i~~H~a~~Yf~~~~gl~~~~~-~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~ 255 (294)
T Consensus 161 ~~~~~l~~~~~~~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~ 240 (282)
T cd01017 161 EYRAKLAKAKGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAK 240 (282)
T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 99998744367856873533789998669848654334888899999999999999985998999818999099999999
Q ss_pred HHCCCEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHHHC
Q ss_conf 719908998053367877---81678999999999998741
Q gi|254780717|r 256 DTGVMSAILDPEGMLIAE---GPELYFQLMRSMSNSIAKNC 293 (294)
Q Consensus 256 e~~~~~~~ld~~~~~~~~---~~~~Y~~~m~~n~~~l~k~l 293 (294)
T Consensus 241 e~g~~v~~l~pl~~~~~~~~~~~~~Y~~~m~~N~~~i~~aL 281 (282)
T cd01017 241 ETGAKLLVLNPLETLTKEEIDDGKDYFSLMKENLETLKRAL 281 (282)
T ss_pred HHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 81996785447666652348873669999999999999970