HHsearch alignment for GI: 254780717 and conserved domain: cd01145
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=100.00 E-value=0 Score=369.05 Aligned_cols=201 Identities=20% Similarity=0.308 Sum_probs=174.2
Q ss_pred CCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 88059997228999999970794417887058998353356802456650257899967661035689997314557679
Q gi|254780717|r 22 GSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVV 101 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~~i 101 (294)
T Consensus 1 a~l~Vvts~~pl~~iv~~I~Gd~v~V~~Lvp~g~dPH~yep~p~d~~~l~~Adlv~~~G~~lE~~~~k~~~~~~~~~-~~ 79 (203)
T cd01145 1 AALNVVVTFPDLKDLVREVAGDAVIVSALTPPGVDPHQYQLKPSDIAKMRKADLVVTSGHELEGFEPKLAELSSNSK-VQ 79 (203)
T ss_pred CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC-CC
T ss_conf 99679998779999999983995389980698989756658999999983897999948870779999998656875-21
Q ss_pred EEEEC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97513-54462100121112332122475677655556789999999974218656588998999986312223589998
Q gi|254780717|r 102 TLSHS-PDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 (294)
Q Consensus 102 ~~~~~-~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 180 (294)
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 159 (203)
T cd01145 80 PGIKILIEDSDTVGMVDRAMGDYHGKGNPHVWLDPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWER 159 (203)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13101222345555456555556799998014799999999999999999868460899999999999999999999999
Q ss_pred HCCCCCCCEEEECCCHHHHHHHHCCCCEEC-CCCCCCCCCCHHH
Q ss_conf 503002781462062157789874981200-3467754449788
Q gi|254780717|r 181 ILQPVEKKKIIVFHEAYRYFASHYNLSIVT-FPMSHSVFMGAAS 223 (294)
Q Consensus 181 ~~~~~~~~~~i~~H~a~~Yf~~~~gl~~~~-~~~~~~~~~s~~~ 223 (294)
T Consensus 160 ~~~~~~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~p~~~Ps~~h 203 (203)
T cd01145 160 QFEGLKGIQVVAYHPSYQYLADWLGIEVVASLEPLPELPPTSSH 203 (203)
T ss_pred HHCCCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 73776799799978737999997799798987569998989998