HHSEARCH alignment of GI: 254780717 and SCOP domain: d1psza_

Alignment
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Probab=100.00  E-value=0  Score=449.77  Aligned_cols=276  Identities=24%  Similarity=0.306  Sum_probs=236.2

Q ss_pred             CCCCCCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf             13238805999722899999997079441788705899835335680245665025789996766103568999731455
Q gi|254780717|r   18 VARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQ   97 (294)
Q Consensus        18 ~~~~~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~   97 (294)
                      .++.++++||||++|+++||++|+||+++|++|+|+|+|||+|+|+|+|+++|++||+|||||++||+|+.+++.....+
T Consensus         4 ~~~~~kl~VVat~~~l~~iv~~I~Gd~v~V~~L~p~g~dPH~yep~p~d~~~l~~ADliv~~G~~~E~~~~~~~~~~~~~   83 (286)
T d1psza_           4 TTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVEN   83 (286)
T ss_dssp             GGGSCCEEEEEEEHHHHHHHHHHHGGGEEEEEEECTTSCSSSCCCCHHHHHHHHHCSEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             77899957999771999999998098259998069897985675899999999709999987988632577889988654


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76799751354462100121112332122475677655556789999999974218656588998999986312223589
Q gi|254780717|r   98 SNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKE  177 (294)
Q Consensus        98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~  177 (294)
                      ...................+.+++++++..|||+|+||.|++.++++|+++|+++||++++.|++|+++|.++|+.++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~i~~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~~  163 (286)
T d1psza_          84 AKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKE  163 (286)
T ss_dssp             TTCCBTTTEEETTTTSCCCBSTTCCSTTCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30256514898316631133456665555664435688889999999999998858012689999999987678888899


Q ss_pred             HHHHCCC--CCCCEEEECCCHHHHHHHHCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Q ss_conf             9985030--02781462062157789874981200-34677544497889999999975499389981888978999999
Q gi|254780717|r  178 LHSILQP--VEKKKIIVFHEAYRYFASHYNLSIVT-FPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSIT  254 (294)
Q Consensus       178 ~~~~~~~--~~~~~~i~~H~a~~Yf~~~~gl~~~~-~~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia  254 (294)
                      +++.+..  .++|.++++||+|+||+++|||++.+ .+.+++.+||++++.++++++|+++|+|||+|++++++.++.|+
T Consensus       164 ~~~~~~~~~~~~~~~i~~H~a~~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la  243 (286)
T d1psza_         164 SKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVS  243 (286)
T ss_dssp             HTTTTTTSCTTTCCEEEEECCCHHHHHHHTCCEEEEESSTTSCSSCHHHHHHHHHHHHTSCCCCEEEETTSCSHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf             99987652145359997444036677744874201021056334571689999999883782599990888929999999


Q ss_pred             HHHCCCEEE---ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             971990899---8053367877816789999999999987419
Q gi|254780717|r  255 NDTGVMSAI---LDPEGMLIAEGPELYFQLMRSMSNSIAKNCS  294 (294)
Q Consensus       255 ~e~~~~~~~---ld~~~~~~~~~~~~Y~~~m~~n~~~l~k~ls  294 (294)
                      +++|++++.   +|+++...+.+ ++|++||+.|+++|+++||
T Consensus       244 ~~~gv~v~~~~~~d~l~~~~~~~-~~Y~~~m~~n~~~l~~aL~  285 (286)
T d1psza_         244 QDTNIPIYAQIFTDSIAEQGKEG-DSYYSMMKYNLDKIAEGLA  285 (286)
T ss_dssp             HHHTCCEEEEECSSSCCCTTSTT-CSHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCEEEECCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHC
T ss_conf             97399678641565667789875-7799999999999999867


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: TroA-like
domain: Pneumococcal surface antigen PssA
species: Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]