RPSBLAST alignment of GI: 254780717 and protein with PDBid: 1toa
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A Length = 313
Score = 131 bits (331), Expect = 1e-31
Identities = 55/301 (18%), Positives = 108/301 (35%), Gaps = 17/301 (5%)
Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60
+N F A G VV +I I V I QG L+ PH Y
Sbjct: 16 TENLYFQGAMGSFGSKDAAADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLY 75
Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120
+ + L NAD+I + G +E+ + + L VV +S + +
Sbjct: 76 TATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVS-------QRL 128
Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180
+ D H+W + Y + L K P + + + ++ QL +LD +
Sbjct: 129 SLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRR 188
Query: 181 ILQPV--EKKKIIVFHEAYRYFASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKIS 237
Q + E++ ++ H+A+ YF+ Y +S + A ++ + + I K+
Sbjct: 189 KAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLP 248
Query: 238 CLFYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAE-------GPELYFQLMRSMSNSIA 290
+F K + ++ + ++ G L ++ Y ++ ++I
Sbjct: 249 AIFIESSIPHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIV 308
Query: 291 K 291
Sbjct: 309 A 309