RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter
[Candidatus Liberibacter asiaticus str. psy62]
         (294 letters)



>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
           {Synechocystis sp. pcc 6803 [TaxId: 1148]}
          Length = 289

 Score =  153 bits (388), Expect = 1e-38
 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 32/295 (10%)

Query: 24  LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83
           + + VSI P    +  I   +   ++LV G + PH Y  +  +   L  A+    +G   
Sbjct: 3   MDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGF 62

Query: 84  ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEAD---------------- 127
           E   ++ L + N    ++  +       +   D+     +   D                
Sbjct: 63  EQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEK 122

Query: 128 --------DLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELH 179
                   D H+WL+P  V+  A  IA EL + DP N+  YE N   F  +L +L++EL 
Sbjct: 123 AKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELG 182

Query: 180 SILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCL 239
            ILQP+ ++K IVFH ++ YFA  YNL +            A  L+ +      + ++ +
Sbjct: 183 QILQPLPQRKFIVFHPSWAYFARDYNL-VQIPIEVEGQEPSAQELKQLIDTAKENNLTMV 241

Query: 240 FYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294
           F   +F +K   +I  + G    +LDP           +   +++++  IA   S
Sbjct: 242 FGETQFSTKSSEAIAAEIGAGVELLDPLA-------ADWSSNLKAVAQKIANANS 289


>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA
           {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
          Length = 286

 Score =  139 bits (351), Expect = 2e-34
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 5/273 (1%)

Query: 24  LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83
           L+VV +   I  I   I         +V     PHEY     +      AD+IF+ G  +
Sbjct: 10  LKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINL 69

Query: 84  ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAH 143
           E+        L + +          +   +        ++   +D H WLN  N    A 
Sbjct: 70  ETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAK 129

Query: 144 VIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPV--EKKKIIVFHEAYRYFA 201
            IA +L  KDP NK  YEKN +E+ ++L +LDKE       +  EKK I+    A++YF+
Sbjct: 130 NIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFS 189

Query: 202 SHYNLSIVTF-PMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGVM 260
             Y +       ++         ++ +  K+   K+  LF     D + +++++ DT + 
Sbjct: 190 KAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIP 249

Query: 261 SAILDPEGMLIAEGPE--LYFQLMRSMSNSIAK 291
                    +  +G E   Y+ +M+   + IA+
Sbjct: 250 IYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAE 282


>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp.
           pcc 6803 [TaxId: 1148]}
          Length = 279

 Score =  133 bits (335), Expect = 2e-32
 Identities = 44/273 (16%), Positives = 106/273 (38%), Gaps = 12/273 (4%)

Query: 24  LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83
            +V+ +   +  +V  +         + +  +  H Y    S+ +  ++AD+I + G  +
Sbjct: 7   KKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNL 66

Query: 84  ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAH 143
           E +  + L ++    +VV       +         +    ++  + H W++P N      
Sbjct: 67  ERWFEQFLGNVKDVPSVVLTEGIEPIP-------IADGPYTDKPNPHAWMSPRNALVYVE 119

Query: 144 VIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQ--PVEKKKIIVFHEAYRYFA 201
            I    ++ DP N   Y  N   +  QL  +D++L + L+  P  ++ ++    A+ Y A
Sbjct: 120 NIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLA 179

Query: 202 SHYNLSIV-TFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGV- 259
             Y +  +  +P++         ++ +  ++ ++ +  +F       K  + +   TG  
Sbjct: 180 RDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGAR 239

Query: 260 MSAILDPEGMLIAEGP-ELYFQLMRSMSNSIAK 291
               L  + +   EGP   +  L+   +  I  
Sbjct: 240 FGGNLYVDSLSTEEGPVPTFLDLLEYDARVITN 272


>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
           {Treponema pallidum [TaxId: 160]}
          Length = 277

 Score =  130 bits (327), Expect = 1e-31
 Identities = 52/280 (18%), Positives = 104/280 (37%), Gaps = 17/280 (6%)

Query: 22  GSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGA 81
           G   VV +I  I   V  I QG      L+     PH Y+    +   L NAD+I + G 
Sbjct: 1   GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGL 60

Query: 82  EMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYI 141
            +E+ + +    L     VV +S +  +             +    D H+W +     Y 
Sbjct: 61  HLETKMGEVFSKLRGSRLVVAVSETIPVS-------QRLSLEEAEFDPHVWFDVKLWSYS 113

Query: 142 AHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPV--EKKKIIVFHEAYRY 199
              +   L K  P     + +  + ++ QL +LD  +    Q +  E++ ++  H+A+ Y
Sbjct: 114 VKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGY 173

Query: 200 FASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTG 258
           F+  Y         +S +    A  ++ + + I   K+  +F       K + ++ +   
Sbjct: 174 FSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQ 233

Query: 259 VMSAILDPEGMLIAE-------GPELYFQLMRSMSNSIAK 291
               ++   G L ++           Y  ++    ++I  
Sbjct: 234 ARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVA 273


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 28.3 bits (63), Expect = 0.92
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145
           +H   L  + +  +  +FH ++  +   WL +P  ++  A V+
Sbjct: 63  AHFGHLAVVFIWLSGMYFHGAKFSNYEAWLADPTGIKPSAQVV 105


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 27.5 bits (61), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145
           SH   L  I L  + S FH +   +   W+ +P+N + IAH I
Sbjct: 48  SHFGHLAIIFLWVSGSLFHVAWQGNFEQWVQDPVNTRPIAHAI 90


>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1,
           BAG1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 112

 Score = 26.3 bits (58), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 160 YEKNEEEFKNQLSQLDKELHSILQ 183
            EK+ E+  +QL +L+KEL  I Q
Sbjct: 16  LEKSVEKIADQLEELNKELTGIQQ 39


>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 348

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 157 KIIYEKNEEEFKNQLSQLDKEL--HSILQPVEKKKIIVFHEAYRY 199
            ++ E+  EEF     Q+ ++L    I  P     +    E  +Y
Sbjct: 2   PVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQY 46


>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
           domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 271

 Score = 25.1 bits (53), Expect = 6.4
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 193 FHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRS 252
           F E   +        +            A     +R++ I ++   +           R 
Sbjct: 165 FPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKR- 223

Query: 253 ITNDTGVMSAILDPEGMLIAEGPE 276
               +   S ++DP G ++A+  E
Sbjct: 224 ---QSYGHSMVVDPWGAVVAQCSE 244


>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor,
           FtsY {Escherichia coli [TaxId: 562]}
          Length = 84

 Score = 24.7 bits (54), Expect = 9.6
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 141 IAHVIAMELI----KKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEK 187
           +      ++I    +   R ++   ++ E     L +   E+  IL  V++
Sbjct: 40  VGVETTRKIITNLTEGASRKQL---RDAEALYGLLKE---EMGEILAKVDE 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,053,188
Number of extensions: 48432
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 19
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)