RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str. psy62] (294 letters) >d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 289 Score = 153 bits (388), Expect = 1e-38 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 32/295 (10%) Query: 24 LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83 + + VSI P + I + ++LV G + PH Y + + L A+ +G Sbjct: 3 MDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGF 62 Query: 84 ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEAD---------------- 127 E ++ L + N ++ + + D+ + D Sbjct: 63 EQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEK 122 Query: 128 --------DLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELH 179 D H+WL+P V+ A IA EL + DP N+ YE N F +L +L++EL Sbjct: 123 AKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELG 182 Query: 180 SILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCL 239 ILQP+ ++K IVFH ++ YFA YNL + A L+ + + ++ + Sbjct: 183 QILQPLPQRKFIVFHPSWAYFARDYNL-VQIPIEVEGQEPSAQELKQLIDTAKENNLTMV 241 Query: 240 FYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 F +F +K +I + G +LDP + +++++ IA S Sbjct: 242 FGETQFSTKSSEAIAAEIGAGVELLDPLA-------ADWSSNLKAVAQKIANANS 289 >d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]} Length = 286 Score = 139 bits (351), Expect = 2e-34 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 5/273 (1%) Query: 24 LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83 L+VV + I I I +V PHEY + AD+IF+ G + Sbjct: 10 LKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINL 69 Query: 84 ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAH 143 E+ L + + + + ++ +D H WLN N A Sbjct: 70 ETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIFAK 129 Query: 144 VIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPV--EKKKIIVFHEAYRYFA 201 IA +L KDP NK YEKN +E+ ++L +LDKE + EKK I+ A++YF+ Sbjct: 130 NIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSEGAFKYFS 189 Query: 202 SHYNLSIVTF-PMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGVM 260 Y + ++ ++ + K+ K+ LF D + +++++ DT + Sbjct: 190 KAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTVSQDTNIP 249 Query: 261 SAILDPEGMLIAEGPE--LYFQLMRSMSNSIAK 291 + +G E Y+ +M+ + IA+ Sbjct: 250 IYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAE 282 >d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 279 Score = 133 bits (335), Expect = 2e-32 Identities = 44/273 (16%), Positives = 106/273 (38%), Gaps = 12/273 (4%) Query: 24 LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83 +V+ + + +V + + + + H Y S+ + ++AD+I + G + Sbjct: 7 KKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNL 66 Query: 84 ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAH 143 E + + L ++ +VV + + ++ + H W++P N Sbjct: 67 ERWFEQFLGNVKDVPSVVLTEGIEPIP-------IADGPYTDKPNPHAWMSPRNALVYVE 119 Query: 144 VIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQ--PVEKKKIIVFHEAYRYFA 201 I ++ DP N Y N + QL +D++L + L+ P ++ ++ A+ Y A Sbjct: 120 NIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLA 179 Query: 202 SHYNLSIV-TFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTGV- 259 Y + + +P++ ++ + ++ ++ + +F K + + TG Sbjct: 180 RDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGAR 239 Query: 260 MSAILDPEGMLIAEGP-ELYFQLMRSMSNSIAK 291 L + + EGP + L+ + I Sbjct: 240 FGGNLYVDSLSTEEGPVPTFLDLLEYDARVITN 272 >d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]} Length = 277 Score = 130 bits (327), Expect = 1e-31 Identities = 52/280 (18%), Positives = 104/280 (37%), Gaps = 17/280 (6%) Query: 22 GSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGA 81 G VV +I I V I QG L+ PH Y+ + L NAD+I + G Sbjct: 1 GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGL 60 Query: 82 EMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYI 141 +E+ + + L VV +S + + + D H+W + Y Sbjct: 61 HLETKMGEVFSKLRGSRLVVAVSETIPVS-------QRLSLEEAEFDPHVWFDVKLWSYS 113 Query: 142 AHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPV--EKKKIIVFHEAYRY 199 + L K P + + + ++ QL +LD + Q + E++ ++ H+A+ Y Sbjct: 114 VKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGY 173 Query: 200 FASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITNDTG 258 F+ Y +S + A ++ + + I K+ +F K + ++ + Sbjct: 174 FSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQ 233 Query: 259 VMSAILDPEGMLIAE-------GPELYFQLMRSMSNSIAK 291 ++ G L ++ Y ++ ++I Sbjct: 234 ARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVA 273 >d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus [TaxId: 32046]} Length = 743 Score = 28.3 bits (63), Expect = 0.92 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145 +H L + + + +FH ++ + WL +P ++ A V+ Sbjct: 63 AHFGHLAVVFIWLSGMYFHGAKFSNYEAWLADPTGIKPSAQVV 105 >d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]} Length = 739 Score = 27.5 bits (61), Expect = 1.5 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 104 SHSPDLHRILLRDNHSHFHDSEADDLHLWL-NPLNVQYIAHVI 145 SH L I L + S FH + + W+ +P+N + IAH I Sbjct: 48 SHFGHLAIIFLWVSGSLFHVAWQGNFEQWVQDPVNTRPIAHAI 90 >d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1, BAG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Score = 26.3 bits (58), Expect = 3.0 Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 160 YEKNEEEFKNQLSQLDKELHSILQ 183 EK+ E+ +QL +L+KEL I Q Sbjct: 16 LEKSVEKIADQLEELNKELTGIQQ 39 >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 Score = 25.8 bits (55), Expect = 4.7 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 157 KIIYEKNEEEFKNQLSQLDKEL--HSILQPVEKKKIIVFHEAYRY 199 ++ E+ EEF Q+ ++L I P + E +Y Sbjct: 2 PVVVEREREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQY 46 >d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Score = 25.1 bits (53), Expect = 6.4 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 4/84 (4%) Query: 193 FHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRS 252 F E + + A +R++ I ++ + R Sbjct: 165 FPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKR- 223 Query: 253 ITNDTGVMSAILDPEGMLIAEGPE 276 + S ++DP G ++A+ E Sbjct: 224 ---QSYGHSMVVDPWGAVVAQCSE 244 >d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]} Length = 84 Score = 24.7 bits (54), Expect = 9.6 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 10/51 (19%) Query: 141 IAHVIAMELI----KKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEK 187 + ++I + R ++ ++ E L + E+ IL V++ Sbjct: 40 VGVETTRKIITNLTEGASRKQL---RDAEALYGLLKE---EMGEILAKVDE 84 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.136 0.392 Gapped Lambda K H 0.267 0.0674 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,053,188 Number of extensions: 48432 Number of successful extensions: 160 Number of sequences better than 10.0: 1 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 19 Length of query: 294 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 209 Effective length of database: 1,240,546 Effective search space: 259274114 Effective search space used: 259274114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (23.9 bits)