BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter
[Candidatus Liberibacter asiaticus str. psy62]
(294 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str.
psy62]
Length = 294
Score = 600 bits (1547), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/294 (100%), Positives = 294/294 (100%)
Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60
MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY
Sbjct: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60
Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120
SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH
Sbjct: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120
Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180
FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS
Sbjct: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180
Query: 181 ILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLF 240
ILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLF
Sbjct: 181 ILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLF 240
Query: 241 YGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294
YGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS
Sbjct: 241 YGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294
>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 294
Score = 63.2 bits (152), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 10/288 (3%)
Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60
M + I L+F + +S+ A V+ S I I I + + T LV+ + H Y
Sbjct: 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSY 60
Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120
+ ++A+ ++NAD+I G +E +K +L K + ++T++ ++ I + ++ S
Sbjct: 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG--INPIGVSEDTS- 117
Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180
DSE + H W++ N I L DP N YE N E+ ++ L +
Sbjct: 118 -VDSEPNP-HAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT 175
Query: 181 ILQPV--EKKKIIVFHEAYRYFASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKIS 237
++ V EK+ + Y A + S+ +P++ + +R+ +++ S KI
Sbjct: 176 RIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK 235
Query: 238 CLFYGPEFDSKIIRSITNDTGV-MSAILDPEGMLIAEGPE-LYFQLMR 283
+F + + + +T +L + + +GP Y L+R
Sbjct: 236 FIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLR 283
>gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 562
Score = 23.9 bits (50), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 155 RNKIIYEKN---EEEFKNQLSQLDKELHSILQPVEKKKIIVF 193
+NKI N E EF N L +L+ PVE KI+++
Sbjct: 276 KNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY 317
>gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus
str. psy62]
Length = 199
Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 11 LFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPAL-LVKGASSPHEYSLRI-SEAM 68
F++ S +A S VV PI+S+ S I + L L+ GA +L + A+
Sbjct: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66
Query: 69 MLENADIIFWLGAEME------------SFLVKPLHS--LNKQSNVVTLSHSPDLHRILL 114
++ II L ++E SF + L + + SN + S +L R++
Sbjct: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126
Query: 115 RDNH 118
+ N+
Sbjct: 127 KGNN 130
>gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 352
Score = 23.1 bits (48), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 253 ITNDTGVMSAILDPE 267
+ ++TGV S +LDPE
Sbjct: 273 VASNTGVFSELLDPE 287
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 22.3 bits (46), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 263 ILDPEGMLIAEGPELYFQLMRSMSNSIAKN 292
++D G IA+G L +++ + +++A+N
Sbjct: 392 VIDMRGQTIAQGKSLSPEMIDGIRHTLARN 421
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,612
Number of Sequences: 1233
Number of extensions: 7913
Number of successful extensions: 34
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 12
length of query: 294
length of database: 328,796
effective HSP length: 73
effective length of query: 221
effective length of database: 238,787
effective search space: 52771927
effective search space used: 52771927
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)