BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str. psy62] (294 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780717|ref|YP_003065130.1| zinc uptake ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 600 bits (1547), Expect = e-174, Method: Compositional matrix adjust. Identities = 294/294 (100%), Positives = 294/294 (100%) Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY Sbjct: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60 Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH Sbjct: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120 Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS Sbjct: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 Query: 181 ILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLF 240 ILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLF Sbjct: 181 ILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCLF 240 Query: 241 YGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 YGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS Sbjct: 241 YGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 >gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 63.2 bits (152), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 10/288 (3%) Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60 M + I L+F + +S+ A V+ S I I I + + T LV+ + H Y Sbjct: 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSY 60 Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120 + ++A+ ++NAD+I G +E +K +L K + ++T++ ++ I + ++ S Sbjct: 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG--INPIGVSEDTS- 117 Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 DSE + H W++ N I L DP N YE N E+ ++ L + Sbjct: 118 -VDSEPNP-HAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT 175 Query: 181 ILQPV--EKKKIIVFHEAYRYFASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKIS 237 ++ V EK+ + Y A + S+ +P++ + +R+ +++ S KI Sbjct: 176 RIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK 235 Query: 238 CLFYGPEFDSKIIRSITNDTGV-MSAILDPEGMLIAEGPE-LYFQLMR 283 +F + + + +T +L + + +GP Y L+R Sbjct: 236 FIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLR 283 >gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 562 Score = 23.9 bits (50), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 155 RNKIIYEKN---EEEFKNQLSQLDKELHSILQPVEKKKIIVF 193 +NKI N E EF N L +L+ PVE KI+++ Sbjct: 276 KNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIY 317 >gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 23.5 bits (49), Expect = 4.8, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 16/124 (12%) Query: 11 LFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPAL-LVKGASSPHEYSLRI-SEAM 68 F++ S +A S VV PI+S+ S I + L L+ GA +L + A+ Sbjct: 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAV 66 Query: 69 MLENADIIFWLGAEME------------SFLVKPLHS--LNKQSNVVTLSHSPDLHRILL 114 ++ II L ++E SF + L + + SN + S +L R++ Sbjct: 67 IVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVF 126 Query: 115 RDNH 118 + N+ Sbjct: 127 KGNN 130 >gi|255764474|ref|YP_003064854.2| glycosyl transferase group 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 23.1 bits (48), Expect = 5.8, Method: Compositional matrix adjust. Identities = 8/15 (53%), Positives = 12/15 (80%) Query: 253 ITNDTGVMSAILDPE 267 + ++TGV S +LDPE Sbjct: 273 VASNTGVFSELLDPE 287 >gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 22.3 bits (46), Expect = 9.3, Method: Compositional matrix adjust. Identities = 8/30 (26%), Positives = 19/30 (63%) Query: 263 ILDPEGMLIAEGPELYFQLMRSMSNSIAKN 292 ++D G IA+G L +++ + +++A+N Sbjct: 392 VIDMRGQTIAQGKSLSPEMIDGIRHTLARN 421 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.136 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 188,612 Number of Sequences: 1233 Number of extensions: 7913 Number of successful extensions: 34 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 12 length of query: 294 length of database: 328,796 effective HSP length: 73 effective length of query: 221 effective length of database: 238,787 effective search space: 52771927 effective search space used: 52771927 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)