RPSBLAST alignment for GI: 254780718 and conserved domain: TIGR01193

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708
 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 27/225 (12%)

Query: 22  GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------- 74
           G  IL DI+ TIK N   T++G +GSGKST+AKL+ G  +   G +  +   +       
Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT 545

Query: 75  ----VGYVPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVLQILDRV-NLIGKYNRNI 124
               + Y+PQ+      +I   L L     ++     +  ++ +I D + N+   Y   +
Sbjct: 546 LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605

Query: 125 KD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
            +    +SGG+ QR  LA+ALL    +L+LDE    +D   E  +   + +++  T   I
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKT---I 662

Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGP-PQTIKDNAEYIRLF 223
           + ++H L  V   +D +I L++ +I  QG   + +  N  Y  L 
Sbjct: 663 IFVAHRLS-VAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706