RPSBLAST alignment for GI: 254780718 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 108 bits (271), Expect = 2e-24
Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 52/239 (21%)
Query: 11 ISLSNTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
I N SF G + L +++ TI+P E V +IG GSGKST+ KL+ G+ +PT GSV
Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523
Query: 69 R--------HPQLI---VGYVPQKVTI------ENTLPLSLMRFMTLSMPSSRD-DVLQI 110
P + +GYVPQ + +N + L P + D ++L+
Sbjct: 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN---------IALGAPYADDEEILRA 574
Query: 111 LDRVNL--------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
+ + IG+ R+ LSGG+ Q LA+ALLR P +L+LDEP
Sbjct: 575 AELAGVTEFVRRHPDGLDMQIGERGRS---LSGGQRQAVALARALLRDPPILLLDEPTSA 631
Query: 157 IDFPGELSLYELITSVRQ-STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
+D E +++ G ++L++H + + D +I ++N RI GP +
Sbjct: 632 MDNRSE---ERFKDRLKRWLAGKTLVLVTHRTSL-LDLVDRIIVMDNGRIVADGPKDQV 686