RPSBLAST alignment for GI: 254780718 and conserved domain: cd03240

>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 34/187 (18%)

Query: 17  SFHKNGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLI----TGIIKPTIGSVKRHP 71
           SFH+       +I F       +TLI G NG+GK+TI + +    TG + P        P
Sbjct: 11  SFHER-----SEIEFF----SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP 61

Query: 72  QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI--GKYN----RNIK 125
           +LI      +  ++     +  +  T++    R   L IL+ V     G+ N        
Sbjct: 62  KLI-REGEVRAQVKLAFENANGKKYTIT----RS--LAILENVIFCHQGESNWPLLDMRG 114

Query: 126 DLSGGE------FQRALLAKALLRKPNLLVLDEPLQGIDFPG-ELSLYELITSVRQSTGC 178
             SGGE        R  LA+       +L LDEP   +D    E SL E+I   +     
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174

Query: 179 GILLISH 185
            +++I+H
Sbjct: 175 QLIVITH 181