RPSBLAST alignment for GI: 254780718 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 42.1 bits (99), Expect = 1e-04
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 17 SFHKNGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLI----TGIIKPTIGSVKRHP 71
SFH+ +I F +TLI G NG+GK+TI + + TG + P P
Sbjct: 11 SFHER-----SEIEFF----SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP 61
Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI--GKYN----RNIK 125
+LI + ++ + + T++ R L IL+ V G+ N
Sbjct: 62 KLI-REGEVRAQVKLAFENANGKKYTIT----RS--LAILENVIFCHQGESNWPLLDMRG 114
Query: 126 DLSGGE------FQRALLAKALLRKPNLLVLDEPLQGIDFPG-ELSLYELITSVRQSTGC 178
SGGE R LA+ +L LDEP +D E SL E+I +
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174
Query: 179 GILLISH 185
+++I+H
Sbjct: 175 QLIVITH 181