RPSBLAST alignment for GI: 254780718 and conserved domain: cd03251
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234
Score = 82.6 bits (204), Expect = 9e-17
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 31/239 (12%)
Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+ N +F +G +L+DI+ I E V L+GP+GSGKST+ LI G +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 69 ------RHPQL-----IVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN- 115
R L +G V Q V + N ++ + P ++R++V + N
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFND---TVAENIAYGRPGATREEVEEAARAANA 117
Query: 116 ------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
L Y+ I + LSGG+ QR +A+ALL+ P +L+LDE +D E +
Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177
Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGP-PQTIKDNAEYIRLF 223
+ R +I+H L + + V+ + +I +G + + Y +L
Sbjct: 178 QAALE--RLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234