RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780718|ref|YP_003065131.1| putative high-affinity zinc
uptake system ATP-binding component of ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
(240 letters)
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 233 bits (597), Expect = 3e-62
Identities = 90/252 (35%), Positives = 144/252 (57%), Gaps = 20/252 (7%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
P+I + N + +L+DI+ +++ EI LIGPNG+GKST+ K I G++KP+ G +
Sbjct: 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 68 --------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSS-----------RDDVL 108
KR +L +GYVPQK +++ + P+++ + L ++ V
Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
+ L+RV + +R I +LSGG+ QR LLA+AL + P+LL+LDEP G+D G+ +Y+L
Sbjct: 122 EALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL 181
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRAT 228
+ +RQ G +L+++H+L +VMA D VICLN + GPP+ + + FG
Sbjct: 182 LKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEENLEKAFGGSLA 240
Query: 229 EILAIHNHKHDH 240
LA + H HDH
Sbjct: 241 HALAGYRHHHDH 252
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 190 bits (485), Expect = 2e-49
Identities = 73/214 (34%), Positives = 128/214 (59%), Gaps = 18/214 (8%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
+ + + G+ +L+D++F +KP E + ++GPNG+GKST+ K I G++KPT GS++
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 72 QLI------VGYVPQKVTIENTLPLSLMRFMTLSM-----------PSSRDDVLQILDRV 114
+ + +GYVPQ+ +I+ P+S+ + + + + + V + L+RV
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120
Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
L +R I +LSGG+ QR LLA+AL++ P+LL+LDEP G+D + +YEL+ +R+
Sbjct: 121 GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180
Query: 175 STGCGILLISHNLHMVMASTDTVICLNNRICYQG 208
G IL+++H+L +V+ D V+ LN + G
Sbjct: 181 -EGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 148 bits (374), Expect = 2e-36
Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 21/243 (8%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
++ + N SF G IL D++F+I EI ++GPNGSGKST+ K + G++KP G V
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 69 RHPQLI-----------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD---VL 108
+ I + YVPQ +T+ + L + L S++D V
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
+ L+ + L +R + +LSGGE QR L+A+AL ++ +L+LDEP +D ++ + EL
Sbjct: 121 EALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFGTRA 227
+ + + G ++++ H+L++ D +I L + +I QG P+ + ++G A
Sbjct: 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDA 240
Query: 228 TEI 230
I
Sbjct: 241 DVI 243
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 145 bits (366), Expect = 2e-35
Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 9 PLISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
+I N SF + L+D++ I+ E V LIGPNGSGKST+ KL+ G++KPT G V
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 68 KRHPQLI------------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVL 108
VG V Q T+E+ + L + L + V
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEERVA 120
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
+ L+ V L +R +LSGG+ QR +A L P +L+LDEP G+D G L EL
Sbjct: 121 EALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
+ +++ G I++++H+L +V+ D V+ L++ +I G P I ++AE +
Sbjct: 181 LKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELLL 234
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 142 bits (358), Expect = 1e-34
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 18/223 (8%)
Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------- 68
T + L ++F ++P EI L+GPNG+GK+T+ K++ G++KPT G +
Sbjct: 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV 70
Query: 69 ---RHPQLIVGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
+ +GYVPQ+ T+ L R LS + + + ++L+ L K
Sbjct: 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFA-RLYGLSKEEAEERIEELLELFGLEDK 129
Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
N+ ++ LSGG QR +A ALL P LL+LDEP G+D ++EL+ + + G
Sbjct: 130 ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189
Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
ILL +H L D VI LN+ +I +G P+ +K+
Sbjct: 190 ILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 139 bits (352), Expect = 6e-34
Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 32/245 (13%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
TPL+ + S G + D++ ++P EIV LIGPNG+GK+T+ LITG KP+ G+V
Sbjct: 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 68 KRHPQLIVGYVPQKV-------TIENTLPLSLMRFM----------------------TL 98
+ I G P ++ T + T + +
Sbjct: 62 IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121
Query: 99 SMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRAL-LAKALLRKPNLLVLDEPLQGI 157
+R+ ++L+ V L +R +LS G+ QR L +A+AL +P LL+LDEP G+
Sbjct: 122 EEREARERARELLEFVGLGELADRPAGNLSYGQ-QRRLEIARALATQPKLLLLDEPAAGL 180
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+ L ELI +R G ILLI H++ +VM D ++ LN + +G P+ +++N
Sbjct: 181 NPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
Query: 217 AEYIR 221
I
Sbjct: 241 PRVIE 245
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 138 bits (350), Expect = 1e-33
Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
L+ + S G ++L+DIN +++ E V ++GP+G GKST+ +LI G+ KPT G V
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 68 K------RHPQLIVGYVPQKVT-------IEN-TLPLSLMRFMTLSMPSSRDDVLQILDR 113
P +GYV Q+ ++N L L L S +R+ ++L+
Sbjct: 61 LLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLEL 117
Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173
V L G ++ LSGG QR +A+AL +P LL+LDEP +D L + + +
Sbjct: 118 VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177
Query: 174 QSTGCGILLISHNLHMVMASTDTVICLNNR 203
+ T +LL++H++ + D V+ L+NR
Sbjct: 178 EETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 136 bits (344), Expect = 5e-33
Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 19/198 (9%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
+ N S G +L D++ +I+ EIV ++GPNG+GKST+ K + G++KP+ G +
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
+ + P++ L R + V Q L+ + L +R +LSGGE
Sbjct: 61 KDLASLSPKE----------LARKIAY--------VPQALELLGLAHLADRPFNELSGGE 102
Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191
QR LLA+AL ++P +L+LDEP +D ++ L EL+ + + G ++++ H+L++
Sbjct: 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162
Query: 192 ASTDTVICLNN-RICYQG 208
D VI L + RI QG
Sbjct: 163 RYADRVILLKDGRIVAQG 180
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 135 bits (341), Expect = 1e-32
Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 29/223 (13%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK 81
G L D++F+++P EI LIGPNG+GK+T+ LI+G ++PT GSV + I G P +
Sbjct: 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE 71
Query: 82 VT-------------------IEN--------TLPLSLMRFMTLSMPSSRDDVLQILDRV 114
+ +EN T L+ +R+ ++L+RV
Sbjct: 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131
Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
L +R +LS G+ +R +A+AL P LL+LDEP G++ L ELI +R+
Sbjct: 132 GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 175 STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
G +LL+ H++ +VM+ D V L+ R+ +G P +++N
Sbjct: 192 R-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 134 bits (338), Expect = 3e-32
Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 22/211 (10%)
Query: 12 SLSNTSFHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
L N SF L DI+ TIK E V ++GPNGSGKST+ +L+ G++ PT G V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 70 HPQLI-----------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQIL 111
+ + VG V Q T+E + L + L + V + L
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL-ENLGLPEEEIEERVEEAL 119
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
+ V L G +R+ LSGG+ QR +A L P++L+LDEP G+D G L EL+
Sbjct: 120 ELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN 202
++ G I++++H+L +++ D VI L +
Sbjct: 180 LKAE-GKTIIIVTHDLDLLLELADRVIVLED 209
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 129 bits (325), Expect = 9e-31
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 17/209 (8%)
Query: 11 ISLSNTSFH----KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
+ + N S L+DI+ +++ E V L+GP+G GKST+ ++I G+ +PT G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 67 VKRH------PQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV 114
V P GYV Q+ +T+ + + L L + +R+ ++L+ V
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARERAEELLELV 119
Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
L G N LSGG QR LA+AL P++L+LDEP +D L E + + +
Sbjct: 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR 179
Query: 175 STGCGILLISHNLHMVMASTDTVICLNNR 203
TG +LL++H++ + D V+ L+ R
Sbjct: 180 ETGKTVLLVTHDIDEAVFLADRVVVLSAR 208
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 126 bits (318), Expect = 5e-30
Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 9 PLISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
++ N S +G + +L+D++F I + + ++GPNG+GKST+ KL+ G + P G+V
Sbjct: 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DVLQILDRVNLIGK-YNRNIK 125
K + +GY Q E +++ ++ P + +V L R G+ + +
Sbjct: 380 KVGETVKIGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVG 438
Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
LSGGE R LLAK LL+ PNLL+LDEP +D SL L ++ G +LL+SH
Sbjct: 439 VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE---SLEALEEALLDFEGT-VLLVSH 494
Query: 186 NLHMVMASTDTVICLNNRI 204
+ + + + + +++
Sbjct: 495 DRYFLDRVATRIWLVEDKV 513
Score = 106 bits (267), Expect = 5e-24
Identities = 58/236 (24%), Positives = 103/236 (43%), Gaps = 40/236 (16%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+I+L N S +L++++ T+ P E + L+G NG+GKST+ K++ G ++P G V
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 69 RHPQLIVGYVPQKVTIENTLPL-------------SLMRFMTLSMPSSRDD--------- 106
R L VGY+ Q+ ++ + L + D
Sbjct: 62 RPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEA 121
Query: 107 VLQILDRVNL------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPL 154
+L+ LD L +R + LSGG +R LA+ALL +P+LL+LDEP
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181
Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR--ICYQG 208
+D L + + ++++SH+ + + ++ L+ Y+G
Sbjct: 182 NHLDLESIEWLEDYLKRYP----GTVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 125 bits (316), Expect = 1e-29
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 22/236 (9%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
P++ + N S + L+ ++ ++ EIV L+G NG+GK+T+ K I G+++P G +
Sbjct: 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 68 KRHPQLI------------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSR-DDVL 108
+ I + YVP+ ++T+E L L ++V
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY 120
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
++ R L + N+ LSGGE Q +A+AL+ +P LL+LDEP +G+ ++E
Sbjct: 121 ELFPR--LKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLF 223
I +R+ G ILL+ N + D L N RI G + + + +
Sbjct: 179 IKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 122 bits (307), Expect = 1e-28
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 22/235 (9%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I L + G +L+ ++ ++ EI+ +IGP+GSGKST+ +LI G+++P G V
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 71 PQLI--------------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
+ I +G + Q +T+ + L LS R+ VL+
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
L+ V L G + +LSGG +R LA+AL P LL+ DEP G+D + +LI
Sbjct: 121 LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA-EYIRLF 223
S+++ G ++++H+L A D + L + +I +G P+ ++ + +R F
Sbjct: 181 SLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLVRQF 235
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 121 bits (304), Expect = 2e-28
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 22/207 (10%)
Query: 12 SLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+ N SF +K G +IL D++ + EI+ L G NG+GK+T+AK++ G+IK + GS+ +
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 71 PQLI--------VGYVPQKV-------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115
+ I +GYV Q V ++ L L L + + + +L ++
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKE-----LDAGNEQAETVLKDLD 115
Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
L R+ LSGG+ QR +A ALL +LL+ DEP G+D+ + ELI + +
Sbjct: 116 LYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL-AA 174
Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
G +++I+H+ + D V+ L N
Sbjct: 175 QGKAVIVITHDYEFLAKVCDRVLLLAN 201
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 119 bits (301), Expect = 6e-28
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+ + N + +IL ++ T+ EIV L+G NG+GK+T+ K I G++ P GS++
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 71 PQLI------------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
+ I +GYVP+ ++T+E L L + + V ++
Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP 120
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
R L + + LSGGE Q +A+AL+ +P LL+LDEP +G+ ++E I +
Sbjct: 121 R--LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178
Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
R G ILL+ N + D L R+ +G + +
Sbjct: 179 RD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 119 bits (300), Expect = 7e-28
Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 24/226 (10%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
P + + N S + + DI+ IK E VTL+GP+G GK+T+ ++I G +P+ G +
Sbjct: 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 68 -------------KRHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVL 108
KR +G V Q +T+E + L L + V
Sbjct: 63 LLDGEDITDVPPEKRP----IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
+ L+ V L G +R LSGG+ QR LA+AL+ +P +L+LDEPL +D + +
Sbjct: 119 EALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE 178
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
+ +++ G + ++H+ +A +D + +N+ RI G P+ I
Sbjct: 179 LKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 118 bits (298), Expect = 1e-27
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 20/226 (8%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I ++N + L DI+ IK E+V L+GP+G+GKST+ ++I G+ P G ++ +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 71 PQLI------------VGYVPQK------VTIENTLPLSL-MRFMTLSMPSSRDDVLQIL 111
+++ VG+V Q +T+ + + L +R S R V ++L
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELL 122
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
V L G +R LSGG+ QR LA+AL +P +L+LDEP +D L +
Sbjct: 123 RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+ G + ++H+ + D V+ LN RI GPP + D+
Sbjct: 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 117 bits (295), Expect = 3e-27
Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 18/213 (8%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV---------- 67
+ K + D++ + EI L+G NG+GK+T K++TG ++PT G+
Sbjct: 10 YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69
Query: 68 KRHPQLIVGYVPQKVTIENTL-PLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNR 122
++ + +GY PQ + + L +RF L +++V +L + L K N+
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
+ LSGG ++ LA AL+ P++L+LDEP G+D ++++LI VR+ G I+L
Sbjct: 130 RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIIL 187
Query: 183 ISHNLHMVMA-STDTVICLNNRICYQGPPQTIK 214
+H++ A I + ++ G PQ +K
Sbjct: 188 TTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 117 bits (295), Expect = 3e-27
Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+ L S + L D++ T++P E + L+GP+G GK+T+ +LI G+ +P G +
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 71 PQLI---------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115
+ + +G V Q +T+ + L + + R V ++L+ V
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL-KLRGVPKAEIRARVRELLELVG 119
Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
L G NR +LSGG+ QR LA+AL R+P+LL+LDEPL +D L E + +++
Sbjct: 120 LEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
G + ++H+ +A D + +N
Sbjct: 180 LGITTIYVTHDQEEALALADRIAVMNE 206
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 117 bits (294), Expect = 4e-27
Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 24/259 (9%)
Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
S PLI + + IL ++ + EI+ ++G +GSGKST+ +LI G+++P G
Sbjct: 4 SPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63
Query: 66 SV----KRHPQLI----------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRD 105
+ + PQL +G + Q+ +T+ + L L R+
Sbjct: 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE 123
Query: 106 DVLQILDRVNLIG-KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
VL L+ V L G + +LSGG +R LA+A+ P LL LDEP G+D
Sbjct: 124 LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGV 183
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE-YIR- 221
+ ELI + + G +++++H+L ++ D V L + ++ +G P+ + + + ++R
Sbjct: 184 IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQ 243
Query: 222 LFGTRATEILAIHNHKHDH 240
F + D+
Sbjct: 244 FFNGIRDGPIPFRYPARDY 262
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 113 bits (285), Expect = 3e-26
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 25/210 (11%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74
K L D++F+IK E + L+G +GSGKST+A+ I G++KPT GS+ + +
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78
Query: 75 -----VGYVPQ--------KVTIENTLPLSLMRFMTLSMPSSRDD-VLQILDRVNLIGKY 120
+ V Q ++TI + L LS +R + VL +L V L +
Sbjct: 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEV 138
Query: 121 -NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
NR +LSGG+ QR +A+AL P LL+ DEP +D + + +L+ +++ G
Sbjct: 139 LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLT 198
Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQG 208
+L I+H+L +V D V + +I +G
Sbjct: 199 LLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 113 bits (284), Expect = 6e-26
Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 42/202 (20%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68
I + N S L DI+ T++ EI L+GPNG+GK+T+ K+I G++KP G +K
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 69 -----RHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
+ P+ + +GY+P++ SL +T V + L
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEP--------SLYENLT---------VRENL--------- 94
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
LSGG QR LA+ALL P LL+LDEP G+D +EL+ +++ G I
Sbjct: 95 -----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTI 148
Query: 181 LLISHNLHMVMASTDTVICLNN 202
LL SH L D V LNN
Sbjct: 149 LLSSHILEEAERLCDRVAILNN 170
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 112 bits (283), Expect = 6e-26
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 28/225 (12%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74
+ NG K L+D++ +I P E V LIGP+G+GKST+ + + G+++PT GSV I
Sbjct: 10 YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69
Query: 75 ----------VGY-------VPQKVTIENTLPLSLMRFMTLSM------PSSRDDVLQIL 111
+G + + +EN L L R T + L L
Sbjct: 70 GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAAL 129
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
+RV L+ K + LSGG+ QR +A+AL+++P L++ DEP+ +D + +L+
Sbjct: 130 ERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215
+ + G +++ H + + D ++ L + RI + GPP + D
Sbjct: 190 INREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 112 bits (282), Expect = 8e-26
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 35/240 (14%)
Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
I N SF + +L+D++ I P E V ++G +GSGKST+ KL+ G+ KP G +
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 69 -----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
+ VGYV Q + + S+ + L P + D+ +I++ L
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSG---SIRENIALGNPEATDE--EIIEAAQLA 586
Query: 118 G----------KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
G Y+ + + LSGG+ QR LA+ALL KP +L+LDE +D E
Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI-KDNAEYIRL 222
+ + + + Q G +++I+H L + ++ ++ +I QG + + Y RL
Sbjct: 647 IILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARL 704
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 112 bits (282), Expect = 9e-26
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83
K + ++F+IK E + L+G +G GKST+ +LI G+ +PT G + + I
Sbjct: 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK------- 79
Query: 84 IENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-YNRNIKDLSGGEFQRALLAKALL 142
LS R+ VL++L++V L + R +LSGG+ QR +A+AL
Sbjct: 80 --------------LSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125
Query: 143 RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
P L+V DEP+ +D + + L+ +++ G L ISH+L +V +D + +
Sbjct: 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL 185
Query: 203 -RICYQGPPQTIKDN 216
+I GP + + N
Sbjct: 186 GKIVEIGPTEEVFSN 200
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 112 bits (281), Expect = 1e-25
Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--------------- 67
K + D++F ++ E + L+G +GSGKST+A+++ G++ P+ GS+
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 68 --KRHPQLIV-----GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
+R Q++ P ++T+ + L L S R V ++L+ V L ++
Sbjct: 364 RLRRRIQMVFQDPYSSLNP-RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF 422
Query: 121 -NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
+R +LSGG+ QR +A+AL +P LL+LDEP+ +D + + L+ +++ G
Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482
Query: 180 ILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223
L ISH+L +V D V + + RI +GP + + +N Y R
Sbjct: 483 YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529
Score = 112 bits (281), Expect = 1e-25
Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 8 TPLISLSNTSFHKNGYK----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
+PL+ + N + ++D++F ++P EI+ ++G +GSGKST+A + G++
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 64 I----GSVKRHPQLI---------------VGYVPQK--------VTIENTLPLSLMRFM 96
G V + + + + Q +TI + + +L
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 97 TLSMPSSRDDVLQILDRVNL-----IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLD 151
S +R +++L++V L +Y LSGG QR ++A AL KP LL+ D
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPH---QLSGGMRQRVMIAMALALKPKLLIAD 179
Query: 152 EPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210
EP +D + + +L+ +++ G +L I+H+L +V D V+ + I GP
Sbjct: 180 EPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239
Query: 211 QTIKDN 216
+ I N
Sbjct: 240 EEILSN 245
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 111 bits (280), Expect = 1e-25
Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 9/201 (4%)
Query: 9 PLISLSNTSFHKNG-YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
P+I + N SF + I + +NF I + V L+GPNG+GKST+ KLITG ++PTIG V
Sbjct: 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV 447
Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFM--TLSMPSSRDDVLQILDRVNLIGKY-NRNI 124
RH + Q + + L S + FM +++ IL R L G +
Sbjct: 448 SRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM 507
Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
LS G+ +R L A+ +++P+LL+LDEP +D +L E I + G G++L+S
Sbjct: 508 SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN---EFPG-GVVLVS 563
Query: 185 HNLHMV-MASTDTVICLNNRI 204
H+ ++ + + +C N +
Sbjct: 564 HDFRLISQVAEEIWVCENGTV 584
Score = 74.2 bits (182), Expect = 3e-14
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 4 ALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
+ I+ + + + S +G ++++D+ + LIGPNGSGKST + I G P
Sbjct: 69 SHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI 128
Query: 64 IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---------PSSRDDVLQI---- 110
+ + L P + + + +M + DD +
Sbjct: 129 PEHIDFYL-LSREIEP---SEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDE 184
Query: 111 ----LDRVN-----------LIGKYN------RNIKDLSGGEFQRALLAKALLRKPNLLV 149
LD ++ L G + +KDLSGG RA LA+AL +KP+LL+
Sbjct: 185 LYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL 244
Query: 150 LDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR--ICYQ 207
LDEP +D + L E + + ++++SH+ + +I L+N+ I Y+
Sbjct: 245 LDEPTNHLDLEAIVWLEEYLAKYDRII---LVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301
Query: 208 GP 209
G
Sbjct: 302 GN 303
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 111 bits (280), Expect = 1e-25
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 30/202 (14%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------------R 69
IL+ I+F ++ E + +IGP+GSGKST+A+L+ GI PT GSV+ R
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 70 HPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK----YNRNI 124
H +GY+PQ V + + T+ ++ RF + P + ++ LI + Y+ I
Sbjct: 411 H----IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 125 KD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
+ LSGG+ QR LA+AL P L+VLDEP +D GE +L I + + G +
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTV 525
Query: 181 LLISHNLHMVMASTDTVICLNN 202
++I+H +AS D ++ L +
Sbjct: 526 VVIAHRPS-ALASVDKILVLQD 546
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 111 bits (278), Expect = 2e-25
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 30/251 (11%)
Query: 8 TPLISLSNTS-FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
+I + N S + G++ L+D+N I E+V +IGP+G+GKST+ + + G++ PT G
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 67 V--------------KRHPQLIVGY-------VPQKVTIENTLPLSLMR----FMTLSMP 101
+ R + +G VP+ +EN L L +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 102 SSRD--DVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
S D L L+RV ++ K + LSGG+ QR +A+AL+++P +++ DEP+ +D
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE 218
+ +++ + Q G +++ H + + D +I L RI + GP + D
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD-EA 239
Query: 219 YIRLFGTRATE 229
++G +E
Sbjct: 240 LDEIYGNEISE 250
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 110 bits (276), Expect = 4e-25
Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 30/235 (12%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
ISL N SF + +G L D+N TIK ++ L+G +G+GKST+ L+ G + PT G ++
Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380
Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVNLI 117
+ + + +V Q + ++ + L+ P S ++++ LD+ L+
Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYL---FAGTIRENILLARPDASDEEIIAALDQAGLL 437
Query: 118 ------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
+ I + LSGG+ QR LA+ALL +LL+LDEP +D E + +
Sbjct: 438 EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQ 497
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
+ + + +L+I+H L A D ++ L+N R+ QG + + +
Sbjct: 498 ALQELAKQK--TVLVITHRLE-DAADADRIVVLDNGRLVEQGTHEELSEKQGLYA 549
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 110 bits (276), Expect = 4e-25
Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 27/234 (11%)
Query: 8 TPLISLSNTSF----HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
L+S+ N S K + L +++ I+ E + ++G +GSGKST+A+L+ G+ KP+
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 64 IGSVKRHPQLI------------VGYVPQKVTIENTL-PLSLMR------FMTLSMPSSR 104
GS+ + + V V Q ++L P + + S+
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQD--PYSSLNPRRTVGRILSEPLRPHGLSKSQ 118
Query: 105 DDVLQILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
+ ++LD+V L + +R +LSGG+ QR +A+AL+ +P LL+LDEP +D +
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216
+ L+ +++ G L ISH+L +V D + + N +I GP + + +
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 110 bits (276), Expect = 5e-25
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 16/192 (8%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+ L N S +L D++ I+ EIV L+GP+GSGKST+ + I G+ +P GS+
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 71 PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
+ + + + + + F + +++ LSGG
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL----------------GLSGG 104
Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
+ QR LA+AL P++L+LDEP +D + L+ S++ G ++L++H+L
Sbjct: 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164
Query: 191 MASTDTVICLNN 202
D V+ L +
Sbjct: 165 ARLADRVVVLRD 176
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 108 bits (271), Expect = 1e-24
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67
+ L N +++L+D+N I+ E V L+GP+G GKST+ ++I G+ +PT G +
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63
Query: 68 ----------KRHPQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQIL 111
KR + V Q +T+ + L + + V ++
Sbjct: 64 GRDVTDLPPEKRG----IAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDKRVKEVA 118
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
+ L NR LSGG+ QR LA+AL+RKP + +LDEPL +D + + I
Sbjct: 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+ + G + ++H+ M D ++ +N+ RI G P + +
Sbjct: 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 108 bits (271), Expect = 1e-24
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
+ N SF G L +++ T+K EIV L+GPNGSGKST+ + I G++KPT G +
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
+ ++ + ++ R+ + + LSGG+
Sbjct: 61 K----------------------------DIAKLPLEELRRRIGYVPQ-------LSGGQ 85
Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191
QR LA+ALL P+LL+LDEP G+D L EL+ + + G +++++H+ +
Sbjct: 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAE 144
Query: 192 ASTDTVICLNN 202
+ D VI L +
Sbjct: 145 LAADRVIVLKD 155
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 108 bits (271), Expect = 1e-24
Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 21/217 (9%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------K 68
K++ ++ ++K EIV L+GPNG+GK+T +I G++KP G +
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 69 RHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
+ +L +GY+PQ K+T+E + L+++ LS + + ++L+ ++
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRGLSKKEREEKLEELLEEFHITHLRKS 129
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
LSGGE +R +A+AL P L+LDEP G+D + ++I ++ G G+L+
Sbjct: 130 KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLI 188
Query: 183 ISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNAE 218
HN+ ++ TD I ++ +G P+ I N
Sbjct: 189 TDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 108 bits (271), Expect = 2e-24
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 30/234 (12%)
Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76
S+ L+D++ TI E+V ++GP+G GK+T+ LI G + P+ GS++ + + I G
Sbjct: 12 SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71
Query: 77 -------------YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
+P I+N L + + R+ Q+L V L G ++
Sbjct: 72 PGAERGVVFQNEALLPWLNVIDNV-AFGL-QLRGIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
I LSGG QR +A+AL +P LL+LDEP +D + EL+ + Q TG +LLI
Sbjct: 130 IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189
Query: 184 SHNLHMVMASTDTVICL---------------NNRICYQGPPQTIKDNAEYIRL 222
+H++ + ++ L R P + IK + E+I +
Sbjct: 190 THDIEEALFLATRLVVLSPGPGRVVERLPLDFARRYAAGEPSRAIKSDPEFIAM 243
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 107 bits (270), Expect = 2e-24
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 17/222 (7%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I L N S G+ L ++ IK E TL+GP+G GK+T+ +LI G PT G +
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 71 PQLIVGYVPQK---------------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN 115
+ I P K +T+ + L R L ++ V + LD V
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGL-RLKKLPKAEIKERVAEALDLVQ 119
Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
L G NR LSGG+ QR +A+AL+ +P +L+LDEPL +D + + +++
Sbjct: 120 LEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179
Query: 176 TGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
G + ++H+ + +D + +N +I G P+ I +
Sbjct: 180 LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 107 bits (270), Expect = 2e-24
Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 53/207 (25%)
Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
I N SF +L+D++ TIKP E V ++GP+GSGKST+ KL+ + PT G +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 69 RHPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
+ + YVPQ +
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL--------------------------------- 87
Query: 118 GKYNRNIKD--LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
++ I++ LSGG+ QR +A+ALLR P +L+LDE +D E + E + ++ +
Sbjct: 88 --FSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK- 144
Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
G +++I+H L + + D +I L++
Sbjct: 145 -GKTVIVIAHRLSTIRDA-DRIIVLDD 169
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 107 bits (269), Expect = 2e-24
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 21/227 (9%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
+I N S K + D+N TI+ E + LIGP+GSGK+T K+I +I+PT G +
Sbjct: 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 70 HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
+ I +GYV Q++ T+ + + + + ++LD
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVP-KLLGWDKERIKKRADELLD 119
Query: 113 RVNL-IGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
V L +Y +R +LSGG+ QR +A+AL P +L++DEP +D L E I
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+++ G I+ ++H++ + D + ++ I P I N
Sbjct: 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 107 bits (269), Expect = 3e-24
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 27/205 (13%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVP------ 79
L+ I+FTI+ EIV IGPNG+GK+T K+++G+++PT G V+ + G VP
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR-----VAGLVPWKRRKK 91
Query: 80 ----------QKVTIENTLP----LSLMRFM-TLSMPSSRDDVLQILDRVNLIGKYNRNI 124
QK + LP L+ + L + + ++ + ++L + +
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151
Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
+ LS G+ RA +A ALL +P +L LDEP G+D + ++ + + G +LL S
Sbjct: 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211
Query: 185 HNLHMVMASTDTVICLNN-RICYQG 208
H + + A V+ ++ R+ Y G
Sbjct: 212 HYMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 107 bits (269), Expect = 3e-24
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 26/226 (11%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----- 63
PLI L N S +NG KIL D+++ + P E ++GPNG+GK+T+ L+TG P+
Sbjct: 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 64 -----IGSVKRHPQL--IVGYVPQKVTI-----ENTLPL-------SLMRFMTLSMPSSR 104
G + +L +G V ++ E + S+ +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL 149
Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
+L+ + +R LS GE +R L+A+AL++ P LL+LDEP QG+D
Sbjct: 150 AAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209
Query: 165 LYELITSVRQS-TGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
L + + S +L ++H+ + + L + QG
Sbjct: 210 LLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 106 bits (267), Expect = 4e-24
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 25/245 (10%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
PL+ L S G K L ++ T++P E+ L+G NG+GKST+ K+++G+ P G +
Sbjct: 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 68 KRHPQLIVGYVPQK------VTIENTLPLS---------------LMRFMTLSMPSSRDD 106
+ + P+ T+ L L RF + + R
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS-L 165
++L R+ L + + DLS + Q +A+AL +L+LDEP + E L
Sbjct: 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT-VKETERL 184
Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224
++LI ++ G I+ ISH L V D + L + R+ P E +RL
Sbjct: 185 FDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMV 243
Query: 225 TRATE 229
R E
Sbjct: 244 GRELE 248
Score = 82.5 bits (204), Expect = 1e-16
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 27/203 (13%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQ----L 73
++D++FT++ EI+ + G G+G++ +A+ + G + G + R P+
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 74 IVGYVP----------QKVTIENTLPLSLMRFMT---LSMPSSRDDVLQILDRVNL-IGK 119
+ YVP EN SL RF + R + + R+ +
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
+ I LSGG Q+ +LA+ L P +L+LDEP +GID + +Y LI + G
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKA 453
Query: 180 ILLISHNLHMVMASTDTVICLNN 202
IL+IS L ++ +D ++ +
Sbjct: 454 ILMISSELPELLGLSDRILVMRE 476
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 105 bits (264), Expect = 9e-24
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 48/205 (23%)
Query: 11 ISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+ + N SF G + +L++++F+I+P E + +IGP+GSGKST+A+LI G+++PT G V+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 69 -----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
VGY+PQ DD L
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQ------------------------DDEL-------FS 89
Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
G NI LSGG+ QR LA+AL P +LVLDEP +D GE +L + I +++ + G
Sbjct: 90 GSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK-AAG 146
Query: 178 CGILLISHNLHMVMASTDTVICLNN 202
++I+H +AS D ++ L +
Sbjct: 147 ATRIVIAHRPE-TLASADRILVLED 170
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 105 bits (264), Expect = 1e-23
Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 24/202 (11%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--------KRHPQLIV 75
++L DI+ +K EI +GPNG+GK+T K+I G+IKP G + K L
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR 73
Query: 76 --------GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL 127
G+ P EN +R + + + + ++LD V L + +K
Sbjct: 74 IGALIEAPGFYPNLTAREN------LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF 127
Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
S G QR +A ALL P+LL+LDEP G+D G L ELI S+R G +L+ SH L
Sbjct: 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL 186
Query: 188 HMVMASTDTVICLNN-RICYQG 208
+ D + +N ++ +G
Sbjct: 187 SEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 105 bits (264), Expect = 1e-23
Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG----- 65
+ L N + + L ++ T+ + L+GPNG+GK+T+ +++ + P+ G
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 66 --SVKRHPQLI---VGYVPQKVTIENTLP-LSLMRFMTL--SMPSSRDD--VLQILDRVN 115
V + PQ + +GY+PQ+ + + ++ +PS V ++L+ VN
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE-LSLYELITSVRQ 174
L + + I LSGG +R +A+AL+ P++L++DEP G+D P E + L+
Sbjct: 120 LGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD-PEERIRFRNLL--SEL 176
Query: 175 STGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
++L +H + V + + V LN ++ ++G
Sbjct: 177 GEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 105 bits (264), Expect = 1e-23
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74
+ L+ ++ +I+ E V ++GP+GSGKST+ ++ G+ +PT G V+ I
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
Query: 75 ----------VGYVPQKVTIENTLP-----LSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
+G+V Q + L + + R+ ++L+RV L +
Sbjct: 74 KELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR 133
Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
N +LSGG+ QR +A+AL P +++ DEP +D + EL+ + + G
Sbjct: 134 LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193
Query: 180 ILLISHN 186
I++++H+
Sbjct: 194 IVVVTHD 200
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 104 bits (262), Expect = 2e-23
Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 50/193 (25%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I L N S G +L+DI+ TI P + + L+G NG+GKST+ KLI G ++P G V
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 71 PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
+ +GY Q LSGG
Sbjct: 61 STVKIGYFEQ----------------------------------------------LSGG 74
Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
E R LAK LL PNLL+LDEP +D +L E + + ++L+SH+ + +
Sbjct: 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL----KEYPGTVILVSHDRYFL 130
Query: 191 MASTDTVICLNNR 203
+I L +
Sbjct: 131 DQVATKIIELEDG 143
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 103 bits (259), Expect = 4e-23
Identities = 58/237 (24%), Positives = 117/237 (49%), Gaps = 23/237 (9%)
Query: 9 PLISLSNTSFHK--NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
+ +L + K K++ D++ + EIV L+GPNG+GK+T +I G+++P G
Sbjct: 1 DMSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60
Query: 67 V------------KRHPQLIVGYVPQKVTI-------ENTLPLSLMRFMTLSMPSSRDDV 107
+ + +L +GY+PQ+ +I +N + + +R L ++++
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL 120
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
+L+ ++ + LSGGE +R +A+AL P ++LDEP G+D + +
Sbjct: 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNAEYIRLF 223
+I ++ G G+L+ HN+ + D I + ++ +G P+ I +N + R++
Sbjct: 181 IIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY 236
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 103 bits (259), Expect = 4e-23
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLI-----V 75
L DI+F+++ EI L+GPNG+GK+T ++I GII P G V P I +
Sbjct: 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI 72
Query: 76 GYVP------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
GY+P K+ + + L + L + L +R + + L+R+ L N+ +++LS
Sbjct: 73 GYLPEERGLYPKMKVIDQL-VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131
Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189
G Q+ A++ P LL+LDEP G+D L ++I + ++ G ++L +H + +
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMEL 190
Query: 190 VMASTDTVICLNN 202
V D V+ LN
Sbjct: 191 VEELCDRVLLLNK 203
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 103 bits (258), Expect = 4e-23
Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 32/239 (13%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
I N +F + G +L+D++FTI + V ++GP+GSGKSTI +L+ + GS+
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL------QILD 112
Q I +G VPQ + N +R+ ++ ++V+ QI D
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHD 118
Query: 113 RV-NLIGKYN-----RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
++ Y+ R +K LSGGE QR +A+A+L+ P +L+LDE +D E +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP-QTIKDNAEYIRLF 223
+ V S G ++I+H L ++ + D +I L + RI +G + + Y ++
Sbjct: 178 AALRDV--SKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 103 bits (258), Expect = 5e-23
Identities = 63/204 (30%), Positives = 97/204 (47%), Gaps = 27/204 (13%)
Query: 10 LISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
+I N S + G + L+D++F I E V L GP+G+GKST+ KLI G +PT G +
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 68 -----------KRHPQL--IVGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDD 106
+ P L +G V P + EN LP +R + R
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP---LRVIGKPPREIRRR 117
Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
V ++LD V L K LSGGE QR +A+A++ +P +L+ DEP +D +
Sbjct: 118 VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177
Query: 167 ELITSVRQSTGCGILLISHNLHMV 190
L + + G +L+ +H+L +V
Sbjct: 178 RLFEEINR-LGTTVLMATHDLELV 200
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 103 bits (257), Expect = 6e-23
Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 18/230 (7%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLIV 75
K + +I+F + P EI L+GPNG+GK+T ++I G+++PT G + + + +
Sbjct: 15 KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRI 74
Query: 76 GYVP------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
GY+P K+T+E+ L L + + + L+R+ ++GK + IK+LS
Sbjct: 75 GYLPEERGLYPKMTVEDQL-KYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSK 133
Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189
G Q+ A++ +P LL+LDEP G+D L + I +++ G I+ SH +
Sbjct: 134 GNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEH 192
Query: 190 VMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLF--GTRATEILAIHNH 236
V D ++ L + G + I+ + RL + E LA
Sbjct: 193 VEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIPG 242
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 102 bits (256), Expect = 7e-23
Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 30/246 (12%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
+I N S+ G ++L ++ ++P E++ ++GPNG+GKST+ K ++G + P G V
Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 70 HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVL-QIL 111
+ + +PQ T++ + + + + P + + Q L
Sbjct: 61 NGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQAL 120
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLR------KPNLLVLDEPLQGIDFPGELSL 165
+L G R+ + LSGGE QR LA+ L + L LDEP +D +
Sbjct: 121 AATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHT 180
Query: 166 YELITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222
L RQ G +L + H+L++ D ++ L+ R+ G PQ + + R+
Sbjct: 181 LRL---ARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERV 237
Query: 223 FGTRAT 228
+G
Sbjct: 238 YGADIR 243
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 102 bits (255), Expect = 1e-22
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 31/217 (14%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----- 63
P + + + G D++ ++K EI L+G NG+GKST+ K++ G+ +P
Sbjct: 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 64 ------------------IGSVKRHPQLIVGYVPQKVTIEN-TLPLSLMRFMTLSMPSSR 104
IG V +H L VP EN L L + + +R
Sbjct: 63 VDGKEVRIKSPRDAIRLGIGMVHQHFML----VPTLTVAENIILGLEPSKGGLIDRRQAR 118
Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL- 163
+ ++ +R L + + DLS GE QR + KAL R LL+LDEP + P E
Sbjct: 119 ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP-TAVLTPQEAD 177
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
L+E++ + G I+ I+H L VMA D V L
Sbjct: 178 ELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVL 213
Score = 82.5 bits (204), Expect = 1e-16
Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 31/218 (14%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------KRHPQ 72
++D++F ++ EIV + G G+G+S + + I+G+ KP G + + +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 73 LIVGYVPQ-KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI------- 124
L + YVP+ + L LSL + L + I K+ R +
Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR 393
Query: 125 --------KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
+ LSGG Q+ +LA+ L R+P+LL+ +P +G+D ++E + +R +
Sbjct: 394 APSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA- 452
Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
G +LLIS +L ++ +D + + RI PP+
Sbjct: 453 GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 101 bits (253), Expect = 2e-22
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 35/234 (14%)
Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76
+ + +QDI+F I EIV +G NG+GKST K++TG++ PT G V+ + G
Sbjct: 31 HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR-----VNG 85
Query: 77 YVP----------------QKVTIENTLP----LSLMRFMTLSMPSSR-----DDVLQIL 111
P QK+ + LP L +++ + +P D + +IL
Sbjct: 86 KDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY-EIPDDEFAERLDFLTEIL 144
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
D L G ++ LS G+ RA LA ALL P +L LDEP G+D + ++ E +
Sbjct: 145 D---LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224
+ +LL +H + D V+ ++ ++ + G +++ + F
Sbjct: 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 101 bits (253), Expect = 2e-22
Identities = 61/234 (26%), Positives = 118/234 (50%), Gaps = 22/234 (9%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+I + N S ++L+ I+ +++ E+V +IGP+GSGKST+ + + G+ +P GS+
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 69 RHPQLI------------VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
+ + VG V P +EN + L+ ++ LS +R+ L+
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLEN-VTLAPVKVKKLSKAEAREKALE 119
Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
+L++V L K + LSGG+ QR +A+AL P +++ DEP +D + +++
Sbjct: 120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVM 179
Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222
+ + G +++++H + D VI ++ +I +GPP+ DN + R
Sbjct: 180 KDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 101 bits (253), Expect = 2e-22
Identities = 61/210 (29%), Positives = 114/210 (54%), Gaps = 16/210 (7%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-------SVKRHPQL 73
++ ++ ++F ++ EI L+GPNG+GK+T K++T ++KPT G V R P+
Sbjct: 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70
Query: 74 I---VGYVPQKVTIENTLP----LSLM-RFMTLSMPSSRDDVLQILDRVNLIGKYNRNIK 125
+ +G V Q +++++ L L + R + R+ + ++LD V L+ +R +K
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
SGG +R +A++L+ +P +L LDEP G+D ++E I +++ G ILL +H
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
Query: 186 NLHMVMASTDTVICLNN-RICYQGPPQTIK 214
+ D V +++ RI +G P+ +K
Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 100 bits (250), Expect = 4e-22
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 28/207 (13%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74
+ L+D+N I+ E V ++GP+GSGKST+ L+ G+ KPT G V + + +
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE 74
Query: 75 ----------VGYVPQK-------VTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
+G+V Q +EN LPL + S + ++L+ + L
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGL 131
Query: 117 IGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
+ + +LSGG+ QR +A+AL+ P +++ DEP +D + EL+ + +
Sbjct: 132 EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 176 TGCGILLISHNLHMVMASTDTVICLNN 202
G I++++H+ + D VI L +
Sbjct: 192 RGKTIIMVTHDPELA-KYADRVIELKD 217
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 99.9 bits (249), Expect = 6e-22
Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 38/227 (16%)
Query: 11 ISLSNTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
I N SF +I L +++ TI+ E V +IG GSGKST+ KL+ G+ KPT GSV
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 68 -------KRHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
+ P + +GYVPQ VT+ +L +TL P + D+ +IL L
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYG---TLRDNITLGAPLADDE--RILRAAELA 117
Query: 118 G----------KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
G + I + LSGG+ Q LA+ALL P +L+LDEP +D E
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 164 SLYE-LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
L E L + T +++I+H + + D +I +++ RI G
Sbjct: 178 RLKERLRQLLGDKT---LIIITHRPSL-LDLVDRIIVMDSGRIVADG 220
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 97.9 bits (244), Expect = 2e-21
Identities = 63/232 (27%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK-----PTIG 65
I L + + + L+DI+ I EI LIGP+G GKST+ +L+ + P G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 66 SVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMTL--------SMPSSR 104
V + I VG V QK N P S+ +
Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQK---PNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 105 DDVLQILDRVNLIGKYNRNIK--DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
+ V + L + L + + LSGG+ QR LA+AL +P +L+LDEP +D
Sbjct: 118 ERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177
Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVM-ASTDTVICLNNRICYQGPPQTI 213
+ ELI +++ I++++HN+ + T LN R+ GP + I
Sbjct: 178 AKIEELIAELKKEY--TIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 98.0 bits (244), Expect = 2e-21
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 19/225 (8%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67
I + N S + L D++ I E+V L+GP+GSGK+T+ +LI G+ +P G++
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 68 -----KRHPQ-LIVGYVPQK------VTIENTLPLSLMRFMTLSMPSS---RDDVLQILD 112
Q VG+V Q +T+ + + L P R V ++L
Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLK 122
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
V L +R LSGG+ QR LA+AL +P +L+LDEP +D L + +
Sbjct: 123 LVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRL 182
Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+ ++H+ + D V+ +N RI G P + D+
Sbjct: 183 HDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 97.4 bits (242), Expect = 3e-21
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 30/238 (12%)
Query: 11 ISLSNTSFH-KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
I N SF +L+DI+F+I+P E V ++GP+GSGKST+ KL+ + PT G +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRV--- 114
I +G V Q + + ++ + L P + +++ + L
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSG---TIRENIALGRPDATDEEIEEALKLANAH 445
Query: 115 ----NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
NL Y+ + +LSGG+ QR +A+ALLR P +L+LDE +D E +
Sbjct: 446 EFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRLF 223
+ + + + G L+I+H L + + ++ N RI +G + + Y RL+
Sbjct: 506 DALKKLLK--GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLY 561
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 97.2 bits (242), Expect = 4e-21
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS 91
I E++ ++GPNG GK+T KL+ G+IKP GS L V Y PQ I +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKPQY--ISPDYDGT 417
Query: 92 LMRFMTLSMPSSRDD---VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148
+ + ++ S+ +I+ +NL R + +LSGGE QR +A AL R+ +L
Sbjct: 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLY 477
Query: 149 VLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
+LDEP +D + + ++I ++ L++ H+++M+ +D +I
Sbjct: 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
Score = 79.5 bits (196), Expect = 7e-16
Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 3 NALSITPL-ISLSNTSFHK---NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58
+A+SI L L H+ NG+K+ + T +P ++V ++GPNG GKST K++ G
Sbjct: 65 DAISIVNLPEELEEEVVHRYGVNGFKLYRLP--TPRPGKVVGILGPNGIGKSTALKILAG 122
Query: 59 IIKPTIGSVKRHP--QLIVGY-------------------VPQKVTIENTLPLSLMRFMT 97
+KP +G + P ++ K + +P + +
Sbjct: 123 ELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVG 182
Query: 98 --LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155
L R ++++R+ L +R++ +LSGGE QR +A ALLR ++ DEP
Sbjct: 183 ELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242
Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTV 197
+D L+ +I + + G ++++ H+L ++ +D V
Sbjct: 243 YLDIRQRLNAARVIRELAE-DGKYVIVVEHDLAVLDYLSDFV 283
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 96.9 bits (241), Expect = 4e-21
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 17/200 (8%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81
+ T+ EIV ++GP+G+GKST+ LI G P G + + P +
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76
Query: 82 ---------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132
+T+ + L L + L+ R+ V +V L G R +LSGG+
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135
Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
QR LA+ L+R+ +L+LDEP +D + L++ + +L+++H+
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195
Query: 193 STDTVICLNN-RICYQGPPQ 211
D V+ L+N RI QG Q
Sbjct: 196 IADRVVFLDNGRIAAQGSTQ 215
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 96.4 bits (240), Expect = 6e-21
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------VG 76
L++++ ++ + ++GP GSGKS + + I G IKP G + + + I +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 77 YVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
YVPQ +T+ + ++ + VL+I + + + NR + LSGG
Sbjct: 75 YVPQNYALFPHMTVYKNIAYG-LKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGG 133
Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
E QR +A+AL+ P +L+LDEP +D + L E + +R+ G +L ++H+
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 191 MASTDTV-ICLNNRICYQGPPQTI 213
A D V I LN ++ G P+ +
Sbjct: 194 WALADKVAIMLNGKLIQVGKPEEV 217
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 96.5 bits (240), Expect = 6e-21
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 34/239 (14%)
Query: 10 LISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
+ L N SF G K L++ N T+ E V ++G +GSGKST+ +L+ G P GS+
Sbjct: 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI 395
Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DVLQILDRVN 115
+ + + + Q+V + + +L + L+ P + D ++ L +V
Sbjct: 396 TLNGVEIASLDEQALRETISVLTQRVHLFSG---TLRDNLRLANPDASDEELWAALQQVG 452
Query: 116 LIGKYNRNIKD------------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
L K + D LSGGE +R LA+ALL L +LDEP +G+D E
Sbjct: 453 L-EKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
+ L+ + G +L+++H L + D +I L+N +I +G + N +
Sbjct: 512 QVLALLFEHAE--GKTLLMVTHRLRGL-ERMDRIIVLDNGKIIEEGTHAELLANNGRYK 567
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 95.3 bits (237), Expect = 1e-20
Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 35/237 (14%)
Query: 15 NTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----- 67
+ SF + K + ++F +K EI+ ++G +GSGKS +AK I G++ +
Sbjct: 8 SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67
Query: 68 ------------KRHPQLI---VGYVPQK--------VTIENTLPLSLMR-FMTLSMPSS 103
K ++ + + Q +TI + + L LS +
Sbjct: 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA 127
Query: 104 RDDVLQILDRVNLIG---KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160
++ +++L+ V + + +LSGG QR ++A AL P LL+ DEP +D
Sbjct: 128 KERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+ + +L+ +++ G ++LI+H+L +V D V + RI +GP + I N
Sbjct: 188 VQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 94.8 bits (236), Expect = 2e-20
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------- 68
L+D++ ++ EI +IG +G+GKST+ + I G+ +PT GSV
Sbjct: 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS 73
Query: 69 ----RHPQLIVGYVPQ-------KVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
R + +G + Q + EN LPL + + + VL++L+ V L
Sbjct: 74 GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGL 130
Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
K + LSGG+ QR +A+AL P +L+ DE +D S+ L+ + +
Sbjct: 131 EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190
Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGP 209
G I+LI+H + +V D V + + +G
Sbjct: 191 GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 93.7 bits (233), Expect = 4e-20
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
I N +F + +L+DINF+IKP E V ++GP G+GK+T+ L+ P G +
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---- 114
I +G V Q + ++M + L P++ D+ + +
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFL---FSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 115 ----NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
L Y+ + +LS GE Q +A+A+LR P +L+LDE ID E +
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQ 211
E + + + ++I+H L + + D ++ L++ +I +G
Sbjct: 180 EALEKLMKGRTS--IIIAHRLSTIKNA-DKILVLDDGKIIEEGTHD 222
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 93.4 bits (232), Expect = 4e-20
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 10 LISLSNTSFHKNGYK-----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
+I L N S L D++ I EI +IG +G+GKST+ +LI + +PT
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 65 GSVK--------------RHPQLIVGYVPQ-------KVTIEN-TLPLSLMRFMTLSMPS 102
GSV R + +G + Q + EN PL L +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAE 117
Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
+ V ++L+ V L K +R LSGG+ QR +A+AL P +L+ DE +D
Sbjct: 118 IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177
Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGP 209
S+ EL+ + + G I+LI+H + +V D V L+ R+ +G
Sbjct: 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 93.6 bits (232), Expect = 5e-20
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 19/209 (9%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------KRHP 71
++ ++F + P E L+G NG+GK+T K++TG KPT G +
Sbjct: 579 GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638
Query: 72 QLIVGYVPQKVTIENTL-PLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNRNIKD 126
+ +GY PQ + L + F L + ++L V L N+ ++
Sbjct: 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRT 698
Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
SGG +R A AL+ P++++LDEP G+D L+++I +R++ I+L SH+
Sbjct: 699 YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK-AIILTSHS 757
Query: 187 LHMVMA-STDTVICLNNRICYQGPPQTIK 214
+ A T T I + ++ G PQ +K
Sbjct: 758 MEEAEALCTRTAIMVIGQLRCIGSPQELK 786
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 92.2 bits (229), Expect = 1e-19
Identities = 53/223 (23%), Positives = 110/223 (49%), Gaps = 19/223 (8%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
+I++ N S +L D++ I I ++IGPNG+GKST+ +++ ++K G +
Sbjct: 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 70 HPQLIVGY----VPQKVTI---ENTLPLSLM--------RF-MTLSMPSSRDDVL--QIL 111
+ + +K++I EN + L RF + + D + + +
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
+ ++L +R + +LSGG+ QRA +A L + + ++LDEPL +D + + +++
Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
+ G I+++ H+++ +D ++ L N ++ QG P I
Sbjct: 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 92.3 bits (229), Expect = 1e-19
Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 31/245 (12%)
Query: 5 LSITPLISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61
+ +I + SF + +L++++FTI+P E+V L+GP+GSGKSTIA L+
Sbjct: 460 DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD 519
Query: 62 PTIGSVK-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
PT G + ++ + +G V Q+ + + + + + ++ +++
Sbjct: 520 PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN--ATDEEIEAA 577
Query: 111 LDRVN-------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
N YN + + LSGG+ QR +A+ALLR P +L+LDE +D
Sbjct: 578 AKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI--KDNA 217
E + E + + Q G +L+I+H L V + V+ R+ G + K N
Sbjct: 638 ESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNG 695
Query: 218 EYIRL 222
Y +L
Sbjct: 696 LYAKL 700
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 91.5 bits (227), Expect = 2e-19
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 17/205 (8%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------KR 69
K + + ++FT+KP E+ L+GPNG+GK+T +++ G+++P G
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA 74
Query: 70 HPQLIVGYVPQKVTIENTLPLSLM-----RFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124
+ +G+V + + L L + ++ DR+ + +R +
Sbjct: 75 EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV 134
Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
S G Q+ +A+AL+ P +L+LDEP G+D +L E I +R + G IL +
Sbjct: 135 GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR-ALGKCILFST 193
Query: 185 HNLHMVMASTDTVICLNN-RICYQG 208
H + V D V+ L+ R+ Y+G
Sbjct: 194 HIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 91.3 bits (226), Expect = 2e-19
Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
Query: 9 PLISLSNTSFHKNGYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
P++ L + +F G K L + ++F I + + ++GPNG GKST+ KL+ G + P G +
Sbjct: 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGEL 644
Query: 68 KRHPQLIVGYVPQ----KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-YNR 122
+++ +L +G+ Q + E T L R L +R + L L +
Sbjct: 645 RKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEAR----KQLGTFGLASHAHTI 700
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
IKDLSGG+ R LA+ L P++L+LDEP +D S+ L ++ + G G+++
Sbjct: 701 KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIE---SIDALAEAINEYNG-GVIM 756
Query: 183 ISHNLHMV 190
+SH+ ++
Sbjct: 757 VSHDERLI 764
Score = 47.4 bits (112), Expect = 4e-06
Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG---IIKPTIGSV 67
I + N G + + + TI L+GPNG GK+T+ K I I P I +
Sbjct: 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVL 324
Query: 68 KRHPQLIVGYVPQKVTI----ENTLPL-----SLMRFMTLSMPSSRDDVLQILDRVNLIG 118
+++ T+ + L L LM + ++ + + ++ D + IG
Sbjct: 325 LCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG 384
Query: 119 KY--------------------NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
R SGG R LA+AL +P LL+LDEP +D
Sbjct: 385 ADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLD 444
Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNR 203
+ L + +++ +L++SH+ + + +I L+N+
Sbjct: 445 LNAVIWLDNYLQGWKKT----LLIVSHDQGFLDSVCTDIIHLDNQ 485
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 90.7 bits (225), Expect = 3e-19
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
I N + + G K + ++N I E + LIGP+GSGK+T K+I +I+PT G +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 70 HPQLI-----------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
+ I +GYV Q++ T+E + L + + + R+ ++L
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADELLA 119
Query: 113 RVNL-IGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
V L ++ +R +LSGG+ QR +A+AL P LL++DEP +D L E
Sbjct: 120 LVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNNRIC 205
++Q G I+ ++H++ D L +RI
Sbjct: 180 RLQQELGKTIVFVTHDI-------DEAFRLADRIA 207
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 90.9 bits (226), Expect = 3e-19
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 35/192 (18%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+ L + G K L ++ +++ E+ L+G NG+GKST+ K+++G+ KP G +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60
Query: 71 PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
+ + P+ R ++M V Q LS G
Sbjct: 61 GKEVSFASPRD-----------ARRAGIAM------VYQ-----------------LSVG 86
Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
E Q +A+AL R LL+LDEP + L+++I +R G ++ ISH L V
Sbjct: 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145
Query: 191 MASTDTVICLNN 202
D V L +
Sbjct: 146 FEIADRVTVLRD 157
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 90.6 bits (225), Expect = 4e-19
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 34/214 (15%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I + N + +L+ I+ T+K E+V +IGP+GSGKST+ + I + +P G++
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 71 PQLI-------------VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
+ VG V P +EN + L+ ++ +S + + L++
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLEN-ITLAPIKVKGMSKAEAEERALEL 119
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
L++V L K + LSGG+ QR +A+AL P +++ DEP +D P EL+
Sbjct: 120 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD-P------ELVG 172
Query: 171 SVRQ------STGCGILLISHNLHMVMASTDTVI 198
V G +++++H + D VI
Sbjct: 173 EVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 89.6 bits (222), Expect = 6e-19
Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 9/201 (4%)
Query: 9 PLISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
P + +S +F Y+ + + + + ++ +G NG GKST+ K++ G + PT G
Sbjct: 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGI 420
Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVNLIGKY-NRNI 124
V RHP+L + Y Q ++ + FM S P + +++ + L L G+ ++I
Sbjct: 421 VGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSI 480
Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
LSGG+ R A P+LLVLDEP +D SL L +++ G G++L+S
Sbjct: 481 ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD---SLGALAKALKNFNG-GVVLVS 536
Query: 185 HNLHMVMASTDTV-ICLNNRI 204
H+ + + + + + ++
Sbjct: 537 HDEEFISSLCKELWVVEDGKV 557
Score = 59.6 bits (144), Expect = 7e-10
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 22/203 (10%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I + N G +L N T+ L+G NG GKST+ + I G V
Sbjct: 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF 134
Query: 71 P--QLIVG-YVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVNLIG------KY 120
Q + G ++ + + F+ + + +I D++ L G
Sbjct: 135 HVEQEVRGDDTEALQSVLES-DTERLDFLAEEKELLAGLTLEEIYDKI-LAGLGFTPEMQ 192
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
+ K LSGG R LA+AL KP+LL+LDEP +D L + + + +
Sbjct: 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKIT----S 248
Query: 181 LLISHNLHMVMASTDTVICLNNR 203
L++SH+ + + +I L N
Sbjct: 249 LIVSHDRNFLNTVCTDIIHLENL 271
Score = 34.9 bits (80), Expect = 0.018
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
+ ++G + KST+ +++ G + PT G V P L + YV
Sbjct: 329 IKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV 368
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 89.5 bits (222), Expect = 7e-19
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
++ L S G+K L D++F++ P E+ LIGPNG+GK+T+ +ITG +P G V
Sbjct: 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63
Query: 68 -------KRHP-----QLIVGYVPQK------VTIENTLPLSLMR----FMTLS---MPS 102
+ P + +G QK +T+ L L+L R F +L
Sbjct: 64 FDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAE 123
Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
R + ++L + L + +R LS G+ Q + L + P LL+LDEP+ G+
Sbjct: 124 ERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAET 183
Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201
EL+ S+ IL++ H++ V D V L+
Sbjct: 184 EKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLH 220
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 89.1 bits (221), Expect = 9e-19
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 26/213 (12%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--- 74
K I+F + E+ + G +G+GKST+ + I G+ KP G++ + ++
Sbjct: 6 IEKRLPDFTLKIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDS 64
Query: 75 ------------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
+G V Q+ + + L L R R V ++LD + L
Sbjct: 65 RKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKR---KRNREDRISVDELLDLLGL 121
Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
NR LSGGE QR LA+AL +P LL+LDEP +D L L + ++++
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181
Query: 177 GCGILLISHNL-HMVMASTDTVICLNNRICYQG 208
++ ++H+L + V+ + R+ Y G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 89.1 bits (221), Expect = 9e-19
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 19/224 (8%)
Query: 3 NALSITPLISLSNTSFHKNGYK---ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI 59
+ S + L + L+DI+F I E V +IG NG+GKST+ KLI GI
Sbjct: 17 HEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76
Query: 60 IKPTIGSVKRHPQLI------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR 113
KPT G VK ++ G+ P+ EN + L+ + V +I++
Sbjct: 77 YKPTSGKVKVTGKVAPLIELGAGFDPELTGRENI--YLRGLILGLTRKEIDEKVDEIIEF 134
Query: 114 VNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELSLYELIT 170
L G + ++ +K S G + R + A +P++L+LDE L D F E L L
Sbjct: 135 AEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF-QEKCLERLNE 192
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
V ++ I+L+SH+L + D I L + +I +G P+ +
Sbjct: 193 LVEKNK--TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEV 234
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 88.7 bits (220), Expect = 1e-18
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 36/241 (14%)
Query: 9 PLISLSNTS--FHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII-KPT 63
PL+S+ N S FH+ G + ++ I+F I+ E + L+G +GSGKS A I G++ P
Sbjct: 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA 64
Query: 64 I----GSVKRHPQLIVGYVPQK-----------------------VTIENTLPLSLMRFM 96
GS+ + ++ ++ TI L L
Sbjct: 65 AAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR 124
Query: 97 TLSMPSSRDDVLQILDRVNL---IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
LS ++R L++L+ V + + + +LSGG+ QR ++A AL +P+LL+ DEP
Sbjct: 125 GLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP 184
Query: 154 LQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQT 212
+D + + +L+ ++ G IL I+H+L +V D V + + I G +T
Sbjct: 185 TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTET 244
Query: 213 I 213
+
Sbjct: 245 L 245
Score = 83.7 bits (207), Expect = 4e-17
Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT-----------------IGS 66
+ + I+ T++ + + L+G +GSGKST+ + +I +
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRP 360
Query: 67 VKRHPQLIV----GYVPQKVTIENTLPLSL-MRFMTLSMPSSRDDVLQILDRVNLIGK-Y 120
++R Q++ G + ++T+ + L + LS V++ L+ V L
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR 420
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
NR + SGG+ QR +A+AL+ KP L++LDEP +D + + +L+ ++Q G
Sbjct: 421 NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSY 480
Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN--AEYIR 221
L ISH+L +V A VI + + +I QGP + + N EY R
Sbjct: 481 LFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 88.3 bits (219), Expect = 2e-18
Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 26/241 (10%)
Query: 6 SITPLISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP 62
SI I N F + KIL+ ++ I + V L+GP+GSGKST+ +L+ P
Sbjct: 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP 405
Query: 63 TIGSV----KRHPQLIVGYVPQKVTIENTLP----LSLMRFMTLSMPS-SRDDVLQILDR 113
T G V + L + ++ ++ + + P ++ + P +R+++ +
Sbjct: 406 TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKA 465
Query: 114 VN-------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
N L Y+ + + LSGG+ QR +A+AL+R P +L+LDE +D E
Sbjct: 466 ANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525
Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG-PPQTIKDNAEYIR 221
+ E + + S G ++++H L + + + +I QG + I Y
Sbjct: 526 RVVQEAL--DKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSS 583
Query: 222 L 222
L
Sbjct: 584 L 584
Score = 79.1 bits (195), Expect = 9e-16
Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 32/239 (13%)
Query: 11 ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
I N SF + +L +++ +I+ + V L+GP+GSGKST+ L+ P G V
Sbjct: 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047
Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS-SRDDVLQILDRVN 115
K + + +G V Q+ + N ++ + S +++++ N
Sbjct: 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG---TIRENIAYGSEEVSEEEIIEAAKLAN 1104
Query: 116 -------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
L Y+ + + LSGG+ QR +A+A+LR P +L+LDE +D E
Sbjct: 1105 AHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERV 1164
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222
+ E + + ++I+H L + + + N ++ QG + Y RL
Sbjct: 1165 VQEALDRAMEGRTT--IVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRL 1221
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 88.4 bits (219), Expect = 2e-18
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 20/192 (10%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV------------ 75
D NFT+ I L GP+GSGK+++ +I G+ +P G ++ + +++V
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 76 ---GYVPQKVTI--ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG 130
GYV Q + T+ +L M SM + D ++ +L +L+ +Y LSGG
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG---TLSGG 132
Query: 131 EFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
E QR + +ALL P LL++DEPL +D P + + + +R IL +SH+L V
Sbjct: 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEV 192
Query: 191 MASTDTVICLNN 202
+ D V+ L N
Sbjct: 193 LRLADRVVVLEN 204
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 87.9 bits (218), Expect = 2e-18
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ------LIVG 76
+ L+D++F + E + LIG NG+GKST+ +L+ GI P G+V + L G
Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGG 94
Query: 77 YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---NLIGKY-NRNIKDLSGGEF 132
+ P+ EN + SR ++ + +D + + +G + + +K S G
Sbjct: 95 FNPELTGRENI------YLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMK 148
Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
R A A +P++L++DE L D + + G ++L+SH+ +
Sbjct: 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVILVSHDPSSIKR 207
Query: 193 STDTVICLNN 202
D + L
Sbjct: 208 LCDRALVLEK 217
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 88.0 bits (218), Expect = 2e-18
Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Query: 11 ISLSNTS-FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
I+L N S +G +L ++NF ++P E + + G +G+GK+++ + + G+ G +
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452
Query: 70 HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL---IGKYNRNI-- 124
+ ++PQ+ + + + + S +++ +L +V L + +
Sbjct: 453 PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRW 512
Query: 125 -KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
+ LSGGE QR A+ LL KP + LDE +D E LY+L+ + ++ +
Sbjct: 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK--EELPDATVISV 570
Query: 184 SH 185
H
Sbjct: 571 GH 572
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 87.7 bits (217), Expect = 3e-18
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 24/230 (10%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------KRHPQLIVGYV 78
++D++F + EI L+G NG+GK+T+ ++I ++ P G V R P + +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 79 ---------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
++T L R LS + + ++ R+ L+ +R + + S
Sbjct: 78 GVLFGERGLYARLTARENL-KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136
Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHM 189
G Q+ +A+AL+ P++LVLDEP G+D ++ I ++ ++ SH +
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA-VIFSSHIMQE 195
Query: 190 VMASTDTVICLNN-RICYQGPPQ-----TIKDNAEYIRLFGTRATEILAI 233
V A D VI L+ + +G + T+ N E I F + E I
Sbjct: 196 VEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALKLEEGTFI 245
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 87.5 bits (217), Expect = 3e-18
Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 29/224 (12%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67
+ D++ ++ EI ++G +GSGKST+ + I +I+PT G V
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 68 KRHPQLIV----GYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
+R +V +P + +EN L + + + + L+ V L G ++
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEV---QGVPRAEREERAAEALELVGLEGWEHK 156
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
+LSGG QR LA+AL P++L++DE +D + + + ++ I+
Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216
Query: 183 ISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223
I+H+L + D + + + R+ G P+ I N +Y+R F
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREF 260
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 86.8 bits (215), Expect = 5e-18
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 20/203 (9%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------K 68
L D+N I E V L+GP+G GK+T ++I G+ +PT G +
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71
Query: 69 RHPQLIV---GYVPQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI 124
R ++ P +N L L + + +V ++L +L+ +R
Sbjct: 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL---DRKP 128
Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
K LSGG+ QR L +A++R+P + ++DEPL +D + + + ++Q G + ++
Sbjct: 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT 188
Query: 185 HNLHMVMASTDTVICLNNRICYQ 207
H+ M D + +N+ Q
Sbjct: 189 HDQVEAMTMADRIAVMNDGQIQQ 211
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 86.5 bits (214), Expect = 6e-18
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 17/197 (8%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81
+ T EI ++GP+GSGKST+ LI G P G V + + P
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75
Query: 82 ---------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132
+T+E + L L + L+ R + L RV L G R +LSGGE
Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLT-AEDRQAIEVALARVGLAGLEKRLPGELSGGER 134
Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
QR LA+ L+R +L+LDEP +D + +L+ + T +L+++H
Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194
Query: 193 STDTVICLNN-RICYQG 208
V+ L+N RI QG
Sbjct: 195 LAQRVVFLDNGRIAAQG 211
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 86.6 bits (214), Expect = 6e-18
Identities = 60/216 (27%), Positives = 109/216 (50%), Gaps = 30/216 (13%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
I SN +F + G +L DI+FT++P + V L+GP+G+GKSTI +L+ GS+
Sbjct: 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITI 597
Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL-------QIL 111
Q I +G VPQ + N L +R+ + PS+ ++ + QI
Sbjct: 598 DGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRY---AKPSASNEEVYAAAKAAQIH 654
Query: 112 DRV-NLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
DR+ YN + + LSGGE QR +A+ +L+ P++++LDE +D E ++
Sbjct: 655 DRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ 714
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
+ + ++++H L ++ + D ++ ++N
Sbjct: 715 AALARL--CANRTTIVVAHRLSTIV-NADLILVISN 747
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 86.5 bits (214), Expect = 6e-18
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 5/188 (2%)
Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPL- 90
+I +E++ ++GPNG GK+T K++ G++KP G ++ V Y PQ + + +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI-ELDTVSYKPQYIKADYEGTVR 79
Query: 91 SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVL 150
L+ +T + +I + + +R + +LSGGE QR +A L + ++ +L
Sbjct: 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLL 139
Query: 151 DEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG-- 208
DEP +D L ++I ++ ++ H++ M+ D +I G
Sbjct: 140 DEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVA 199
Query: 209 -PPQTIKD 215
PPQ+++
Sbjct: 200 NPPQSLRS 207
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 86.3 bits (214), Expect = 6e-18
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 37/189 (19%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74
++D++F ++ EIV + G G+G++ +A+ + G+ P G + + +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 75 -VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQ 133
+ YVP E+ L+ L + + + L L LSGG Q
Sbjct: 76 GIAYVP-----EDRKREGLV----LDLSVAENIALSSL---------------LSGGNQQ 111
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAS 193
+ +LA+ L R P +L+LDEP +G+D + +Y LI + + G +LLIS L ++
Sbjct: 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGL 170
Query: 194 TDTVICLNN 202
D ++ +
Sbjct: 171 CDRILVMYE 179
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 85.7 bits (212), Expect = 9e-18
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
++ N S + + D++FT+ E + + GPNG+GK+T+ +++ G+++P G V
Sbjct: 1 MMLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60
Query: 69 ---RHPQLIVGYVPQKVTI---ENTLPLSL-----MRFMT-LSMPSSRDDVLQILDRVNL 116
Q + Q + + + L + F + + + L +V L
Sbjct: 61 WQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGL 120
Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
G + + LS G+ +R LA+ L L +LDEP +D G L L+ +
Sbjct: 121 AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQG 180
Query: 177 GCGILLISH 185
G +LL +H
Sbjct: 181 G-IVLLTTH 188
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 85.5 bits (212), Expect = 1e-17
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVKRHPQLIVGYV 78
G +IL+ +N TIK E+ L+GPNGSGKST+AK I G + T G + + I
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT--- 67
Query: 79 PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD-LSGGEFQRALL 137
+ E L + F+ P V + R + + SGGE +R +
Sbjct: 68 --DLPPEERARLGI--FLAFQYPPEIPGV--------KNADFLRYVNEGFSGGEKKRNEI 115
Query: 138 AKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV-MASTDT 196
+ LL +P+L +LDEP G+D + E+I +R G +L+I+H ++ D
Sbjct: 116 LQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIKPDR 174
Query: 197 V-ICLNNRICYQGPPQTIKD 215
V + + RI G + +
Sbjct: 175 VHVLYDGRIVKSGDKELALE 194
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 85.2 bits (211), Expect = 1e-17
Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 32/239 (13%)
Query: 11 ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
I N SF + IL+ ++ TI P + V L+G +G GKST+ L+ PT G +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 68 K-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR--- 113
R + +G V Q+ + + ++ + P + D+ ++ +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDG---TIAENIRYGKPDATDEEVEEAAKKAN 117
Query: 114 -----VNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
++L Y+ + + LSGG+ QR +A+ALLR P +L+LDE +D E
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222
+ E + + ++I+H L + + + N ++ QG + Y +L
Sbjct: 178 VQEALDRAMKGRTT--IVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 84.5 bits (209), Expect = 2e-17
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 34/241 (14%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG----------- 58
I + F + K+L+ ++FTI E V ++G NGSGKSTI +L+
Sbjct: 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILID 411
Query: 59 ---IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV- 114
I + ++ S+++ +G VPQ + N L +++ S S ++V++ R
Sbjct: 412 GQDIKEVSLESLRQ----SIGVVPQDSVLFNDTILYNIKYGNPSA--SDEEVVEACKRAG 465
Query: 115 ------NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
L Y + LSGGE QR LA+A L+ +L+LDE +D E
Sbjct: 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETERE 525
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFG 224
+ ++I V +G +++I H L ++ ++ N + G + +E
Sbjct: 526 ILDMIMDV--MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLW 583
Query: 225 T 225
T
Sbjct: 584 T 584
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 84.6 bits (209), Expect = 2e-17
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 22/202 (10%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GS 66
++ L N S G +L ++NFTI EIVTL+GP+G GKST+ + G + G
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 67 VKRHPQLI---------VGYVPQKVTIENTLP-LSLMRFMTLSMPSS------RDDVLQI 110
+ + Q + +G + Q + P LS+ + + ++P++ R+
Sbjct: 62 LWLNEQRLDMLPAAQRQIGILFQDALL---FPHLSVGQNLLFALPATLKGNARRNAANAA 118
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
L+R L G ++++ LSGG+ R L +ALL +P L+LDEP +D + +
Sbjct: 119 LERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVF 178
Query: 171 SVRQSTGCGILLISHNLHMVMA 192
S ++ G + ++H+L V A
Sbjct: 179 SEVRAAGIPTVQVTHDLQDVPA 200
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 83.7 bits (207), Expect = 5e-17
Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 27/220 (12%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVKRHPQLIVGYVP 79
+IL+ +N T+K E+ ++GPNGSGKST+A I G + T G + + I+ P
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75
Query: 80 QK-----VTIENTLP-----LSLMRFMTLSMPSSRDD----------VLQILDRVNLIGK 119
+ + + P ++ F+ +M + R + + + + L +
Sbjct: 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 120 Y-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
+ R + + SGGE +R + + LL +P L +LDEP G+D + E I ++R+ G
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-G 194
Query: 178 CGILLISHNLHMVMAST-DTV-ICLNNRICYQGPPQTIKD 215
G+L+I+H ++ D V + + RI G P+ ++
Sbjct: 195 RGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEE 234
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 83.1 bits (205), Expect = 6e-17
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 37/228 (16%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67
+ D + ++ EI ++G +GSGKST+ +L+ +I+PT G +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 68 KRHPQLIV----GYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
+R +V +P + +EN L + + + L+ L+ V L G ++
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEV---QGVPKAEREERALEALELVGLEGYADK 160
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELS--LYELITSVRQSTGC 178
+LSGG QR LA+AL P++L++DE +D E+ L EL ++++
Sbjct: 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT--- 217
Query: 179 GILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNA--EYIRLF 223
I+ I+H+L + D + I + I G P+ I N +Y+R F
Sbjct: 218 -IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 83.0 bits (205), Expect = 7e-17
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-------RHPQL 73
NG L IN +I E V L+GP+G+GKST+ KLI PT G+++
Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71
Query: 74 IVGYVPQKVTI---ENTLPLSLMRFMTLSMP---------SSRDDVLQILDRVNLIGKYN 121
+ Y+ +K+ + + L + ++ R V L+ V L K+
Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR 131
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
+LSGGE QR +A+A++ P +L+ DEP +D + L+ + ++ G ++
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVV 190
Query: 182 LISHNLHMVMASTDTVICLNN 202
+ +H +V + VI L
Sbjct: 191 VATHAKELVDTTRHRVIALER 211
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 82.7 bits (204), Expect = 8e-17
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74
++G + ++FT+ E + + GPNGSGK+T+ +++ G+ P G V + +
Sbjct: 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRD 69
Query: 75 -----VGYVPQKVTIENTL-PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128
+ Y+ I+ TL L +RF S + V + L RV L G +R + LS
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQVEEALARVGLNGFEDRPVAQLS 127
Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
G+ +R LA+ LL L +LDEP +D G E + G +L +L
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 82.6 bits (204), Expect = 9e-17
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 31/239 (12%)
Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+ N +F +G +L+DI+ I E V L+GP+GSGKST+ LI G +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 69 ------RHPQL-----IVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVN- 115
R L +G V Q V + N ++ + P ++R++V + N
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFND---TVAENIAYGRPGATREEVEEAARAANA 117
Query: 116 ------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
L Y+ I + LSGG+ QR +A+ALL+ P +L+LDE +D E +
Sbjct: 118 HEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177
Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGP-PQTIKDNAEYIRLF 223
+ R +I+H L + + V+ + +I +G + + Y +L
Sbjct: 178 QAALE--RLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 82.2 bits (203), Expect = 1e-16
Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 32/204 (15%)
Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+S++N SF + ++L++++ +K E + L+G +GSGKST+ +L+TG +KP G +
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI- 59
Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD-RVNLIGKYNRNI--K 125
+L + + ++ +L+ R L RN +
Sbjct: 60 ----------------------TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97
Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
SGGE QR LA+ LL+ +++LDEP G+D E L LI V + ++ I+H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK--DKTLIWITH 155
Query: 186 NLHMVMASTDTVICLNN-RICYQG 208
+L + D ++ L N +I QG
Sbjct: 156 HL-TGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 81.6 bits (201), Expect = 2e-16
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 22/211 (10%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
+ L+ L + KIL +I+ +++ E + + GP+G GKST+ K++ +I PT G++
Sbjct: 1 SMLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 68 KRHPQLI-----------VGYVPQKV-----TIENTLPL-SLMRFMTLSMPSSRDDVLQI 110
+ + V Y Q T+E+ L +R + R L +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR----NRRPDRAAALDL 116
Query: 111 LDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
L R L +NI +LSGGE QR L + L P +L+LDE +D + ++ E+I
Sbjct: 117 LARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICL 200
+ +L I+H+ + D VI L
Sbjct: 177 HRYVREQNVAVLWITHDKDQAIRHADKVITL 207
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 81.2 bits (200), Expect = 2e-16
Identities = 50/204 (24%), Positives = 97/204 (47%), Gaps = 20/204 (9%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS--VKRHPQLIV 75
F + + ++ ++FT++ + + +IG NGSGKST+AK++ G+I+PT G + HP
Sbjct: 21 FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG 80
Query: 76 GYVPQ-----------------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIG 118
Y + ++ I L L L R + + L V L+
Sbjct: 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140
Query: 119 KY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
+ N L+ G+ QR LA+AL+ +P +++ DE L +D L L+ +++ G
Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 178 CGILLISHNLHMVMASTDTVICLN 201
+ ++ ++ M+ +D V+ ++
Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMH 224
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 80.0 bits (197), Expect = 5e-16
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 35/241 (14%)
Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
I+ + F +G IL +I+ IKP E+V ++G +GSGKST+ KLI P G V
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 68 ----------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
+ VG V Q+ + N S+ + L+ P + ++++ L
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNR---SIRDNIALADPGM--SMERVIEAAKLA 115
Query: 118 GK----------YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
G Y+ + + LSGG+ QR +A+AL+ P +L+ DE +D+ E
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAEYIRL 222
++ + + G +++I+H L V + ++ RI QG + +N Y L
Sbjct: 176 AIMRNMHDI--CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
Query: 223 F 223
+
Sbjct: 234 Y 234
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 80.0 bits (197), Expect = 6e-16
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 26/185 (14%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74
IL+ + +K E V ++GP+GSGKST+ ++ G+ P+ G V+ Q +
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 75 -----VGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121
VG+V P +EN LPL L S SR +L+ V L +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELR---GESSADSRAGAKALLEAVGLGKRLT 141
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
LSGGE QR LA+A +P++L DEP +D + +L+ ++ + G ++
Sbjct: 142 HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201
Query: 182 LISHN 186
L++H+
Sbjct: 202 LVTHD 206
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 79.8 bits (197), Expect = 6e-16
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 35/240 (14%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP-----T 63
P I + + + + L+DIN I N++ LIGP+G GKST+ + + +
Sbjct: 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 64 IGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMT--LSMPSSRDDVL 108
G V + I VG V QK N P+S+ + L + +D L
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQK---PNPFPMSIYDNVAYGLRLHGIKDKEL 122
Query: 109 -----QILDRVNLIG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
L + L + +++ LSGG+ QR +A+AL KP +L++DEP +D
Sbjct: 123 DEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTIKDNAE 218
L + ELIT +++ I++++HN+ +D T + GP I N +
Sbjct: 183 ISTLKIEELITELKKKY--TIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 79.6 bits (196), Expect = 8e-16
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 31/229 (13%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP---TIGSV 67
++LS+ K IL+ ++ T KP E++ ++GP+GSGK+T+ + G + G +
Sbjct: 31 LTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI 90
Query: 68 --------KRHPQLIVGYVPQKVTIENTLPLS--LMRFMTLSMPSSR---------DDVL 108
R + I GYV Q + TL + L L +PSS ++V+
Sbjct: 91 LLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVI 150
Query: 109 QILD----RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
L LIG N I+ LSGGE +R +A LL P++L LDEP G+D L
Sbjct: 151 SELGLEKCADTLIG--NPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQ 208
Query: 165 LYELITSVRQSTGCGILLISHNL-HMVMASTDTVICLNN-RICYQGPPQ 211
+ +L+ + +S G ++ H + D ++ L+ + Y G P+
Sbjct: 209 VVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 78.7 bits (194), Expect = 1e-15
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP--------TIGSVKRHPQL-- 73
+IL D++ ++ +++ ++G +GSGK+T+ I+G ++ R P
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80
Query: 74 -IVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRD---DVLQILDRVNLIGKYNRN 123
V YV Q +T+ TL + + + + +L + L
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ--STGCGIL 181
+K +SGGE +R +A LL P +L+LDEP G+D + L++++ Q ++
Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD---SFTALNLVSTLSQLARRNRIVI 197
Query: 182 LISH 185
L H
Sbjct: 198 LTIH 201
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 78.5 bits (193), Expect = 2e-15
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 22/221 (9%)
Query: 37 EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI------ENTLPL 90
EI+ L+GPNG+GKST+ + G+ GS++ Q + + ++ + P
Sbjct: 26 EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP 84
Query: 91 SLM---RFMTLSMPSSR--DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLR-- 143
M ++TL P + + + + L K R+ LSGGE+QR LA +L+
Sbjct: 85 FAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 144 -----KPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
LL+LDEP+ +D + +L L++++ Q G I++ SH+L+ +
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAW 203
Query: 199 CLNNRICY-QGPPQTIKDNAEYIRLFGTRATEILAIHNHKH 238
L G + + + +G L I H
Sbjct: 204 LLKRGKLLASGRREEVLTPPVLAQAYGMN-FRRLDIEGHPM 243
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 78.3 bits (193), Expect = 2e-15
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 31/176 (17%)
Query: 11 ISLSNTSFHK-NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
I L N S +G +L+D++F IKP + + + GP+G+GKS++ + + G+ G +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 70 HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSG 129
+ ++PQ+ + TL R+ ++ D V LSG
Sbjct: 61 PEGEDLLFLPQR---------PYLPLGTL-----REQLIYPWDDV------------LSG 94
Query: 130 GEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
GE QR A+ LL KP + LDE +D E LY+L+ + G ++ + H
Sbjct: 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL----KELGITVISVGH 146
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 77.9 bits (192), Expect = 2e-15
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 38/211 (18%)
Query: 11 ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--GSV 67
++++ S K +L++++ KP E+ ++GP+G+GKST+ + G G V
Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68
Query: 68 --------KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
KR + I+GYVPQ ++ L +L TL
Sbjct: 69 LINGRPLDKRSFRKIIGYVPQ----DDILHPTLTVRETLM-------------------- 104
Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
+ ++ LSGGE +R +A L+ P+LL LDEP G+D L + L+ + TG
Sbjct: 105 FAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRT 163
Query: 180 ILLISHNLHMVMAST-DTVICLNN-RICYQG 208
I+ H + D ++ L+ R+ Y G
Sbjct: 164 IICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 77.8 bits (192), Expect = 3e-15
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 19/190 (10%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
L+DIN + E+V ++GP GSGKS++ + G ++ GSV + YV Q+ I
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--IAYVSQEPWI 77
Query: 85 ENT---------LPLSLMRFMTLSMPSSRDDVLQILDRVNL--IGKYNRNIKDLSGGEFQ 133
+N P R+ + + + L+IL +L IG+ N LSGG+ Q
Sbjct: 78 QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGIN---LSGGQKQ 134
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE-LITSVRQSTGCGILLISHNLHMVMA 192
R LA+A+ ++ +LD+PL +D ++E I + + +L++H L ++
Sbjct: 135 RISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT-RILVTHQLQLLPH 193
Query: 193 STDTVICLNN 202
+ D ++ L+N
Sbjct: 194 A-DQIVVLDN 202
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 77.7 bits (192), Expect = 3e-15
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 50 STIAKLITGIIKPTIGSVKRHPQLI------------VGYVPQKVTIENTLPLSLMRFMT 97
ST+ KLITG+++PT G++ + +G V Q + L++ +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLF--PELTVRENLF 58
Query: 98 LSMPSSRDD--VLQILDRVNLIGKYNRN-IKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
+ D + L+RV L +R+ + LSGG+ QR +A+ALL+KP LL+LDEP
Sbjct: 59 FGLRDKEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 77.2 bits (190), Expect = 4e-15
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 15 NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
+ + N +L+ I+FTIKP E V ++G G+GKS++ + +++P G + I
Sbjct: 1145 SLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDI 1204
Query: 75 -----------VGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI----- 117
+ +PQ + T+ +L F S D++ + L+R L
Sbjct: 1205 SKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEY----SDDEIWEALERCQLKDVVSS 1260
Query: 118 --GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
G + + + S G+ Q LA+ALLRK +LVLDE +D + + + I
Sbjct: 1261 LPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216
+ C +L I+H L+ VM S D V+ L R+ P + +
Sbjct: 1321 --EFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFDSPAELLSD 1363
Score = 74.5 bits (183), Expect = 2e-14
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 28/227 (12%)
Query: 8 TPLISLSNTSF---HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
I + N SF ++ L+DINF IK ++V ++GP GSGKS++ I G +
Sbjct: 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS 575
Query: 65 GSVKRHPQLIVGYVPQKVTI------ENTL---PLSLMRFMTLSMPSSRDDVLQIL---D 112
GSV + V YVPQ+ I EN L P R+ + + L+IL D
Sbjct: 576 GSVAVNG--SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGD 633
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE--LIT 170
IG+ N LSGG+ QR LA+A+ + ++ +LD+PL +D ++E +
Sbjct: 634 LTE-IGERGIN---LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG 689
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+R T ++L++H L + D +I L + +I G + + +
Sbjct: 690 LLRGKT---VILVTHQLQ-FLPHADQIIVLKDGKIVESGTYEELLKS 732
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 76.9 bits (189), Expect = 4e-15
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----KRHPQLIVGYVPQ 80
+LQD++FT+ P E+ L+GP+GSGKST+ L+ +P G V K Q Y+
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 81 KVTIENTLPL-----------------SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
KV++ P+ S + + + L Y+
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS-----GYDTE 143
Query: 124 IKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
+ + LSGG+ QR +A+AL+R P +L+LDE +D E + + + +
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR--T 201
Query: 180 ILLISHNLHMV 190
+L+I+H L V
Sbjct: 202 VLVIAHRLSTV 212
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 75.9 bits (187), Expect = 9e-15
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 41/225 (18%)
Query: 15 NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
+ + N +L++I+F+IKP E V ++G GSGKS++ + +++ + GS+ I
Sbjct: 9 SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68
Query: 75 -----------VGYVPQKVTI------ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
+ +PQ + N P S +++ Q L+RV L
Sbjct: 69 SKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---------YSDEELWQALERVGLK 119
Query: 118 -------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
G + +++ LS G+ Q LA+ALLRK +LVLDE +D + +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210
+ I C +L I+H L ++ S D ++ L+ R+ P
Sbjct: 180 KTIREAF--KDCTVLTIAHRLDTIIDS-DRILVLDKGRVVEFDSP 221
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 75.3 bits (185), Expect = 2e-14
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 11 ISLSNTSFHKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
++ N SF + + IL I+FTI + V ++G +G+GKSTI +L+ GS+
Sbjct: 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITI 322
Query: 70 HPQLI-----------VGYVPQKVTIENTLPLSLMRF----MTLSMPSSRDDVLQILDRV 114
Q I +G VPQ + N +++ T + + QI D +
Sbjct: 323 DGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 115 NLI------GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
+ G R +K LSGGE QR +A+ +L+ P +L+LDE +D E ++
Sbjct: 383 QSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
+ V S G L+I+H L + D +I L+N
Sbjct: 442 LREV--SAGRTTLVIAHRLSTI-IDADEIIVLDN 472
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 72.8 bits (178), Expect = 8e-14
Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68
I L+ + ++ L DI E + L+GP+G+GKS++ +++ + P G++
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 69 -------RHP--------QLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDV 107
+ P + VG V Q+ +T++ L + R + LS +
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
++L R+ L +R LSGG+ QR +A+AL+ +P +L+ DEP +D +
Sbjct: 123 EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQG 208
+I + TG ++++H + + + V+ + N I QG
Sbjct: 183 IIKEL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 70.3 bits (172), Expect = 4e-13
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 31/229 (13%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-----------KRHPQL 73
L ++ I + VT+IG NG+GKST+ I G +KPT G +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 74 IVGYVPQK--------VTIENTLPLSLMRFMTLSMPSS-----RDDVLQILDRVNLIGKY 120
++ V Q +TIE L L+ R + S+ R + L R+ L G
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL-GLE 139
Query: 121 NR---NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
NR I LSGG+ Q L A L P +L+LDE +D + EL + +
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199
Query: 178 CGILLISHNLHMVMASTDTVICLNN-RIC--YQGPPQTIKDNAEYIRLF 223
L+++HN+ + + +I L++ +I G + + I++F
Sbjct: 200 LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASLTVLDLIQMF 248
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 70.0 bits (171), Expect = 5e-13
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 39/214 (18%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT------------IGSVKRHP 71
K + ++ T+ EI L+G +GSGKS IAK I G+ K I ++ P
Sbjct: 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80
Query: 72 QLIVGYVPQKVTIENTLPLSLM-------RFMTLSMPS-------------SRDDVLQIL 111
+ V V++ P S + R + ++P+ + +++L
Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELL 140
Query: 112 DRVNLIGKYNRNI-----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
RV + K +++I +L+ GE Q+ ++A AL +P LL+ DEP ++ + ++
Sbjct: 141 HRVGI--KDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIF 198
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
L++ + Q++ ILLISH+L M+ D + L
Sbjct: 199 RLLSRLNQNSNTTILLISHDLQMISQWADKINVL 232
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 69.9 bits (171), Expect = 6e-13
Identities = 57/246 (23%), Positives = 111/246 (45%), Gaps = 38/246 (15%)
Query: 12 SLSNTSFHKN--GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68
+L HK +++L+ ++ +++++IG +GSGKST + I + KP+ GS++
Sbjct: 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65
Query: 69 ----------RHPQLIVGYVPQKVTIENTLPLSLMRF-----MT--------------LS 99
+ QL Q + L + F MT +S
Sbjct: 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125
Query: 100 MPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+ + + L +V + K + LSGG+ QR +A+AL +P +++ DEP +D
Sbjct: 126 KAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD- 184
Query: 160 PGELSLYELITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
EL + E++ ++ G +++++H + + VI L+ +I +GPP+ + N
Sbjct: 185 -PEL-VGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
Query: 217 AEYIRL 222
+ RL
Sbjct: 243 PQSPRL 248
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 68.4 bits (167), Expect = 2e-12
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 28/192 (14%)
Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP---------------------- 71
+ +++ L+GPNG GKST K++ G +KP +G P
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 72 --QLIVGYVPQKV-TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128
+ V PQ V I + + L R + +++D++ L +RNI LS
Sbjct: 84 EGDVKVIVKPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLS 141
Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLH 188
GGE QR +A AL R + DEP +D L+ LI + + +L++ H+L
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLA 200
Query: 189 MVMASTDTVICL 200
++ +D + CL
Sbjct: 201 VLDYLSDYIHCL 212
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 67.7 bits (165), Expect = 3e-12
Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK--------PTIGSVKRHPQLIVG 76
+L+++N IKP ++V ++G +G+GK+T+ ++I G K P G V+ +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 77 YVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK--YNRNIKDLSGGEFQR 134
+P + E + S + ++IL+R L Y R +LS G+ +R
Sbjct: 458 LIPGE--YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKER 515
Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA-S 193
A LAK L +PN+L++DE +D + + I+ + + G +++++H + A
Sbjct: 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALR 575
Query: 194 TDTVI 198
DT+I
Sbjct: 576 PDTLI 580
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 67.2 bits (164), Expect = 3e-12
Identities = 40/184 (21%), Positives = 81/184 (44%), Gaps = 23/184 (12%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG---Y 77
NG ++++++ + + + + GP+G GK+++ +++ G+ T G + + +
Sbjct: 446 NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFF 505
Query: 78 VPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL------IGKYNRNI-- 124
+PQ+ T+ + + L S +S +D+L+IL+ V L G ++ +
Sbjct: 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDW 565
Query: 125 ---KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
LS GE QR A+ KP +LDE + E +LY + G +
Sbjct: 566 DWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC----REMGITFI 621
Query: 182 LISH 185
+ H
Sbjct: 622 SVGH 625
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 65.7 bits (160), Expect = 9e-12
Identities = 52/225 (23%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 5 LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
+ PL+S+S S K +D++F + P E++ ++G +GSGK+T+ K I+G + P
Sbjct: 1 MMDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA 60
Query: 65 GSV-----KRHPQLIV---------------GYVPQ--------KVTIENTLPLSLMRFM 96
G+V P+ + G+V Q +V+ + LM
Sbjct: 61 GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG 120
Query: 97 TLSMPSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155
+ R + L+ V + + + + + SGG QR +A+ L+ +P L+ +DEP
Sbjct: 121 ARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180
Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
G+D + L +L+ + + G +++++H+L + D ++ +
Sbjct: 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM 225
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 65.0 bits (158), Expect = 2e-11
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 13/218 (5%)
Query: 11 ISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+ L N F N + + IN TIK E+V LIG NGSGKST+A L+TG+ +P G +
Sbjct: 323 LELRNVRFAYQDNAFH-VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381
Query: 69 RHPQLIVGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121
+ + + V + L L+ + P + LQ L+ + +
Sbjct: 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLND 441
Query: 122 RNIK--DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCG 179
LS G+ +R L ALL + ++LVLDE D Y+++ + + G
Sbjct: 442 GRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501
Query: 180 ILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNA 217
I ISH+ H D ++ + N + + + A
Sbjct: 502 IFAISHDDHY-FIHADRLLEMRNGQLSELTGEERDETA 538
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 64.2 bits (156), Expect = 3e-11
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 44/166 (26%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSL 92
+K E++ ++GPNG+GK+T K++ G + P + + + Y PQ +
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-WDGITPVYKPQYI---------- 70
Query: 93 MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
DLSGGE QR +A ALLR + DE
Sbjct: 71 ---------------------------------DLSGGELQRVAIAAALLRNATFYLFDE 97
Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
P +D L+ I + + L++ H+L ++ +D +
Sbjct: 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 64.5 bits (157), Expect = 3e-11
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 30/193 (15%)
Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP--QLIVGYV------------- 78
+P +++ L+G NG GKST K++ G KP +G P Q I+ Y
Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157
Query: 79 ---------PQKVTIENTLPLSLMRFM--TLSMPSSRDDVLQILDRVNLIGKYNRNIKDL 127
PQ V + +P ++ + L RD+ ++ D+++L +R ++ L
Sbjct: 158 EDNLKAIIKPQYV---DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQL 214
Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
SGGE QR +A ++K ++ + DEP +D L I S+ I+++ H+L
Sbjct: 215 SGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRY-IIVVEHDL 273
Query: 188 HMVMASTDTVICL 200
++ +D + CL
Sbjct: 274 SVLDYLSDFICCL 286
Score = 58.8 bits (142), Expect = 1e-09
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 12/184 (6%)
Query: 37 EIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS-LMRF 95
EI+ ++G NG+GK+T +++ G +KP G P L V Y PQK++ + + L+
Sbjct: 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGG--EIPVLNVSYKPQKISPKREGTVRQLLHT 425
Query: 96 MTLSM---PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
P +DV++ L N+I + ++ LSGGE QR LA L + ++ ++DE
Sbjct: 426 KIRDAYMHPQFVNDVMKPLQIENIID---QEVQGLSGGELQRVALALCLGKPADVYLIDE 482
Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN---NRICYQGP 209
P +D + ++I ++ H+ M D VI +
Sbjct: 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANS 542
Query: 210 PQTI 213
PQ++
Sbjct: 543 PQSL 546
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 64.1 bits (156), Expect = 3e-11
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74
+L++++F +K E + ++G G+GKST+ + ++ G ++ I
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 75 --VGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE 131
+ +PQ T+ T+ +L F S D+ + RV+ G +LS G+
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYS-----DEEIYGALRVSEGG------LNLSQGQ 130
Query: 132 FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVM 191
Q LA+ALL++P +LVLDE ID+ + + + I + T IL I+H L ++
Sbjct: 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE--EFTNSTILTIAHRLRTII 188
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 63.1 bits (153), Expect = 6e-11
Identities = 50/206 (24%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
+L ++ G +L++IN I+ E++ + G GSGK+++ LI G ++P+ G +K
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 72 QLIVGYVPQKVTI------ENTL-PLSLMRFMTLSMPSS---RDDVLQILDRVN-LIGKY 120
+ + + Q I EN + +S + S+ + +D+ + ++ N ++G+
Sbjct: 99 R--ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
LSGG+ R LA+A+ + +L +LD P +D E ++E + I
Sbjct: 157 GIT---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRI 213
Query: 181 LLISHNLHMVMASTDTVICLNNRICY 206
L+ S H+ A D ++ L+ Y
Sbjct: 214 LVTSKMEHLKKA--DKILILHEGSSY 237
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 61.8 bits (150), Expect = 2e-10
Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 49/242 (20%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR--------- 69
K +IL+DI+ IKP E+ ++GP GSGK+T+ K + G + + S
Sbjct: 124 KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLK 183
Query: 70 --HPQLIVGYVPQ------KVTIENTLPLSL------MRFMTLS----MPSSRDDVLQIL 111
P+ V Y + ++T+ TL + R+ +S + + D +L+IL
Sbjct: 184 EFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL 243
Query: 112 ----DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
L+G N ++ +SGGE +R + + L+ ++L DE +G+D + ++
Sbjct: 244 GLDHCADTLVG--NDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD---SSTAFQ 298
Query: 168 LITSVRQST--GCGILLISHNLHMVMASTDTV-----ICL--NNRICYQGPPQTIKDNAE 218
+I ++RQ L+S ++ S + + L YQGP + E
Sbjct: 299 IIKALRQLAHITGATALVS----ILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354
Query: 219 YI 220
+
Sbjct: 355 DM 356
Score = 51.8 bits (124), Expect = 2e-07
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 35/164 (21%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTI-----AKLITGIIKPTIGSVKRHP------Q 72
++L +++ KP + L+G +G+GK+T+ + G I+ I + P
Sbjct: 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDI-LISGFPKDQETFA 863
Query: 73 LIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD------VLQILDRVNLIGKY 120
+ GYV Q+ +T+ +L S L +P D V ++++ + L +Y
Sbjct: 864 RVSGYVEQQDIHSPELTVRESLRFS----AALRLPKEVSDEEKYEYVEEVIELLEL-KEY 918
Query: 121 NRNI-----KDLSGGEFQRALLAKALLRKPNLLV-LDEPLQGID 158
+ LS + +R + L+ P+ ++ LDEP G+D
Sbjct: 919 ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 60.6 bits (147), Expect = 4e-10
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 20/163 (12%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GSVK--RHPQLI 74
++ IL+D + +KP E+V ++G GSG ST+ K + + + G + P
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 75 VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD-RVNLIGKYNRNIKDLSGGEFQ 133
I + +T V + LD + G N ++ +SGGE +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLT---------VRETLDFALRCKG--NEFVRGISGGERK 125
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
R +A+AL+ + ++L D +G+D + E++ +R
Sbjct: 126 RVSIAEALVSRASVLCWDNSTRGLD---SSTALEILKCIRTMA 165
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 60.3 bits (146), Expect = 4e-10
Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 11 ISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+S + T + G + +L++++ ++ E V L GP+GSGKST+ + + P G +
Sbjct: 10 VSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL 69
Query: 69 -RH-----------PQLI-------VGYVPQKVTI---ENTLPLSLMRFMTLSMP--SSR 104
RH P+ + +GYV Q + + + L + + +P +R
Sbjct: 70 VRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR 129
Query: 105 DDVLQILDRVNLIGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
+L R+NL + ++ SGGE QR +A+ + +L+LDEP +D
Sbjct: 130 AKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRA 189
Query: 164 SLYELITSVRQSTGCGILLISHN 186
+ ELI + G ++ I H+
Sbjct: 190 VVVELIREAKAR-GAALVGIFHD 211
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 58.8 bits (142), Expect = 1e-09
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 42/191 (21%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80
G ++ + F I+P + + GPNG GKS++ +++ G+ G + + Y+PQ
Sbjct: 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQ 552
Query: 81 KVTIENTLPLSLMRFMTLSM-------PSSRD----------DVLQILDRVNL------I 117
+ +M+ P S + D+ ILD V+L
Sbjct: 553 R------------PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQRE 600
Query: 118 GKYN--RNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
G ++ R+ KD LSGGE QR +A+ +P +LDE + E +++ +
Sbjct: 601 GGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAA----K 656
Query: 175 STGCGILLISH 185
G +L I+H
Sbjct: 657 DAGISLLSITH 667
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 57.7 bits (140), Expect = 3e-09
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 35/209 (16%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--G 65
P++ + N N +IL+ +N +I EI ++GPNGSGKST++K+I G I G
Sbjct: 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64
Query: 66 SVKRHPQLIVGYVPQK-------------VTIENTLPLSLMRFMTLSMPSSRDD------ 106
+ + I+ P++ + I +S F+ L+ S R
Sbjct: 65 DILFKGESILDLEPEERAHLGIFLAFQYPIEIPG---VSNADFLRLAYNSKRKFQGLPEL 121
Query: 107 --------VLQILDRVNLIGKY-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
+ + L V + + +RN+ + SGGE +R + + L L +LDE G
Sbjct: 122 DPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG 181
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISH 185
+D + E I + S I+LI+H
Sbjct: 182 LDIDALKIIAEGINKLMTSENS-IILITH 209
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 54.9 bits (132), Expect = 2e-08
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85
LQ+++ +I N +V + G +GSGKST+ Y K +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG-------------------LYASGKARLI 51
Query: 86 NTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLR- 143
+ LP R + + D LQ L V L + + LSGGE QR LA L
Sbjct: 52 SFLPK-FSRNKLIFI-----DQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSE 105
Query: 144 -KPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
L +LDEP G+ L E+I + G ++LI HNL + ++S D +I
Sbjct: 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDV-LSSADWII 159
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 48.5 bits (115), Expect = 2e-06
Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 32/198 (16%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------- 68
+ + G +L++I+F+I P + V L+G GSGKST+ ++ T G ++
Sbjct: 12 YTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV 70
Query: 69 --RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI-------G 118
+ + G +PQKV I T +L + S +++ ++ + V L G
Sbjct: 71 PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS----DEEIWKVAEEVGLKSVIEQFPG 126
Query: 119 KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
+ + + D LS G Q LA+++L K +L+LDEP +D ++ + +++Q
Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD---PITYQVIRKTLKQ 183
Query: 175 S-TGCGILLISHNLHMVM 191
+ C ++L H + ++
Sbjct: 184 AFADCTVILSEHRIEAML 201
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 47.9 bits (114), Expect = 2e-06
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 127 LSGGEFQRALLAKALLRKPN---LLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
LSGGE QR LAK L ++ L +LDEP G+ F L E++ + G +++I
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVI 881
Query: 184 SHNLHMVMASTDTVICL-------NNRICYQGPPQTIKDNAE 218
HNL V+ + D +I L I G P+ +
Sbjct: 882 EHNLD-VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKA 922
Score = 37.8 bits (88), Expect = 0.002
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
+R+ LSGGE QR LA + L VLDEP G+ L E + +R G
Sbjct: 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGN 534
Query: 179 GILLISHNLHMVMASTDTVI-------CLNNRICYQGPPQTIKDNAEYIR---LFGTRAT 228
++++ H+ + A+ D +I I +G P+ + N E + L G +
Sbjct: 535 TVIVVEHDEDTIRAA-DHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYLSGKKTI 593
Query: 229 EI 230
E+
Sbjct: 594 EV 595
Score = 34.0 bits (78), Expect = 0.040
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53
L++I+ I N++V + G +GSGKS++A
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLA 43
Score = 27.8 bits (62), Expect = 2.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
L++I+ I + G +GSGKST LI + P +
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKST---LINDTLVPAL 652
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 47.9 bits (114), Expect = 3e-06
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 127 LSGGEFQRALLAKALLRK---PNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
LSGGE QR LAK L ++ L +LDEP G+ F L E++ + G +++I
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVI 228
Query: 184 SHNLHMVMASTDTVICL-------NNRICYQGPP 210
HNL V+ D +I L ++ G P
Sbjct: 229 EHNLD-VIKCADWIIDLGPEGGDGGGQVVASGTP 261
Score = 28.2 bits (63), Expect = 1.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
L++I+ I + + G +GSGKS+ LI + P +
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSS---LINDTLYPAL 46
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 47.5 bits (113), Expect = 3e-06
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 33/155 (21%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTI---------AKLITGIIKPTIGSVKRHPQLI 74
++L +I+ +KP + L+G +G+GK+T+ A +ITG I + ++ Q
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRS 80
Query: 75 VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134
GYV Q+ DV V +++ ++ LS + +R
Sbjct: 81 TGYVEQQ------------------------DVHSPNLTVREALRFSALLRGLSVEQRKR 116
Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
+ L KP++L LDEP G+D ++ +
Sbjct: 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFL 151
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 47.3 bits (112), Expect = 4e-06
Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 34/201 (16%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG--IIKPT---- 63
I +S F +K I D N + L+G NG+GK+T+ K+++G ++
Sbjct: 14 IEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV 73
Query: 64 -------------------IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSR 104
+G I G VP + I ++ + P R
Sbjct: 74 LGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDIS---AEHMIFGVGGDDPERR 130
Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
+ ++ ILD ++L + ++ +S G+ +R + LL+ +L+LDE +D
Sbjct: 131 EKLIDILD-IDLRWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARAD 185
Query: 165 LYELITSVRQSTGCGILLISH 185
L E + + G I+ +H
Sbjct: 186 LLEFLKEECEQRGATIVYATH 206
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 47.1 bits (112), Expect = 4e-06
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA---------------------KLITGIIKPTI 64
L++++ I N++V + G +GSGKS++A + + + KP +
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70
Query: 65 GSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMT-----LSMPSSRDDVLQILDRVNLIG- 118
S++ I + QK T N P S + +T L + +R + + L + +G
Sbjct: 71 DSIEGLSPAIA--IDQKTTSRN--PRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGL 126
Query: 119 ---KYNRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVR 173
+R+ LSGGE QR LA + L VLDEP G+ L E + +R
Sbjct: 127 GYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLR 186
Query: 174 QSTGCGILLISHNLHMVMASTDTVI 198
G +L++ H+ + A+ D VI
Sbjct: 187 DL-GNTVLVVEHDEDTIRAA-DHVI 209
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 43.2 bits (101), Expect = 7e-05
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 36/197 (18%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------- 67
G L +IN I ++ ++G G GKS++ I G ++ G V
Sbjct: 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEA 72
Query: 68 -KRHPQLIVGYVPQK-----VTIENTL----PLSLMRFMTLSMPSSRD---DVLQILDRV 114
+ + V Y QK T+E + P + R+ ++ S D+L D+
Sbjct: 73 TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQT 132
Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS---LYELITS 171
IG+ N LSGG+ QR +A+AL + N++ LD+P +D LS + E I
Sbjct: 133 E-IGERGIN---LSGGQRQRICVARALYQNTNIVFLDDPFSALDI--HLSDHLMQEGILK 186
Query: 172 VRQSTGCGILLISHNLH 188
Q ++L++H L
Sbjct: 187 FLQDDKRTLVLVTHKLQ 203
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 42.3 bits (99), Expect = 1e-04
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 48/210 (22%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKST----------------------IAKLITGIIKP 62
+L+ + IKP + V + G GSGKS+ I+KL ++
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 63 TIGSVKRHPQLIVGYV-----PQKVTIENTL----PLSLMRFMTLSMPSSRDDVLQILDR 113
+ + + P L G + P+ ++ L ++ ++ M S+P D V+
Sbjct: 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVV----- 150
Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI-TSV 172
++ S G+ Q LA+A +RK ++L++DE ID E L +++ T+
Sbjct: 151 -------TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF 203
Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN 202
T ++ I+H + ++ D V+ L+
Sbjct: 204 ADRT---VVTIAHRVSTIL-DADLVLVLSR 229
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 42.1 bits (99), Expect = 1e-04
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 34/187 (18%)
Query: 17 SFHKNGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLI----TGIIKPTIGSVKRHP 71
SFH+ +I F +TLI G NG+GK+TI + + TG + P P
Sbjct: 11 SFHER-----SEIEFF----SPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP 61
Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI--GKYN----RNIK 125
+LI + ++ + + T++ R L IL+ V G+ N
Sbjct: 62 KLI-REGEVRAQVKLAFENANGKKYTIT----RS--LAILENVIFCHQGESNWPLLDMRG 114
Query: 126 DLSGGE------FQRALLAKALLRKPNLLVLDEPLQGIDFPG-ELSLYELITSVRQSTGC 178
SGGE R LA+ +L LDEP +D E SL E+I +
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174
Query: 179 GILLISH 185
+++I+H
Sbjct: 175 QLIVITH 181
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
protein expressed in rat epithelial cells which is
thought to have an important regulatory role in tight
junction barrier function. Barmotin belongs to the SMC
protein family. SMC proteins are large (approximately
110 to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 197
Score = 42.0 bits (99), Expect = 2e-04
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 45/192 (23%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTI------------AKLITGIIKPTI---GSVKRHPQL 73
I F P + ++GPNGSGKS I AK + G + GS R P
Sbjct: 18 IPF---PPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP-- 72
Query: 74 IVGYVPQKVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132
+ +T +N+ S++ S+ DV +I+ GK + + LSGGE
Sbjct: 73 -ANFAEVTLTFDNSDGRYSII---------SQGDVSEII---EAPGKKVQRLSLLSGGE- 118
Query: 133 QRALLAKALL------RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
+AL A ALL R VLDE +D L+ + T ++I+H
Sbjct: 119 -KALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKET--QFIVITHR 175
Query: 187 LHMVMASTDTVI 198
M + D +
Sbjct: 176 -KGTMEAADRLY 186
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 40.7 bits (95), Expect = 4e-04
Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 42/180 (23%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
Y + D+ F + + GPNGSGKSTI I + + +R + G
Sbjct: 10 YFVPNDVTFG--EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC----- 62
Query: 83 TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRA----LLA 138
+ + LSGGE + + +LA
Sbjct: 63 ----IVAAVSAELIFT-------------------------RLQLSGGEKELSALALILA 93
Query: 139 KALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
A L+ L +LDE +G+D +L E I G +++I+H + D +I
Sbjct: 94 LASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHL-PELAELADKLI 151
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 37.3 bits (86), Expect = 0.004
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
N ++ +++ T +E ++GPNGSGK+T+ I + I
Sbjct: 9 NNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52
>gnl|CDD|31432 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 34.2 bits (78), Expect = 0.030
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 32 TIKPNEIVTLI-GPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQLIVGYVPQKV 82
+ P LI G G+ KST+A+ + ++ P I V P+ + K
Sbjct: 33 AVDPQIGGALIAGEKGTAKSTLARALADLL-PEIEVVIGCPFNCDPDDPEEMCDECRAKG 91
Query: 83 TIENTLPLSL--MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE--FQRALLA 138
LP + F+ L + ++ D ++ LD K L G FQ LLA
Sbjct: 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDI----------EKALEEGPKAFQPGLLA 141
Query: 139 KA 140
+A
Sbjct: 142 RA 143
>gnl|CDD|34333 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 34.3 bits (78), Expect = 0.034
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--KPTIGSVKRHPQL 73
S GY + +F ++ + G N +GKST+ I ++ PT R
Sbjct: 4 QSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTSSKYPRLEPK 63
Query: 74 IVGYVPQKVTIENTL 88
G ++ +
Sbjct: 64 QGGQYGGRLVAIDRE 78
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes
are implicated in the metabolism of DNA ends. They
cleave ends sealed by hairpin structures and are
thought to play a role in removing protein bound to DNA
termini..
Length = 213
Score = 34.1 bits (78), Expect = 0.041
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 21 NGYKILQDINFT-IKPNEIVTLIGPNGSGKSTIAKLIT 57
++ Q I+FT + N + + GP G+GKSTI IT
Sbjct: 12 GPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAIT 49
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 33.6 bits (77), Expect = 0.054
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+ + GP GSGKST+AKL+
Sbjct: 1 IIAIDGPAGSGKSTVAKLL 19
>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 33.5 bits (76), Expect = 0.055
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 TPLISLSNTSFHKNGY--KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
P+ISLS SF +L+ + + I+ NE L+G G+GK+T+ + + + +
Sbjct: 434 IPIISLSGNSFAFTSCSLWLLEQLLWNIQNNEPTLLVGETGTGKTTMIQYLALKLHFKLT 493
Query: 66 SVKRHPQ 72
+ + Q
Sbjct: 494 VINKSQQ 500
>gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 212
Score = 33.3 bits (76), Expect = 0.058
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 24/139 (17%)
Query: 41 LIGPNGSGKSTI------------AKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTL 88
++GPNGSGKS + +K+ + I + HP L V +V + +
Sbjct: 30 IVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV--EVHFQEII 87
Query: 89 PLSLMRFMTLSMPSSRDDVLQ-ILDRVNLIGKYN-RNIKDLSGGEFQRALLAKALL---- 142
L++ + + +R +LQ ++++ + K + +NI +LSGGE + L + AL+
Sbjct: 88 DKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGE--KTLSSLALVFALH 145
Query: 143 -RKPN-LLVLDEPLQGIDF 159
KP L V+DE +DF
Sbjct: 146 HYKPTPLYVMDEIDAALDF 164
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyses the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling
inter- mediates into the (bacterio)chlorophyll branch
in response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 32.9 bits (76), Expect = 0.076
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 39 VTLIGPNGSGKSTIAKLITGIIKP 62
+ +IGP GSGK+ +AK + GI+ P
Sbjct: 25 LLMIGPPGSGKTMLAKRLPGILPP 48
>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 32.5 bits (74), Expect = 0.10
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56
+K I+ + GP GSGKST+AK++
Sbjct: 1 MKAAIIIAIDGPAGSGKSTVAKIL 24
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.3 bits (73), Expect = 0.13
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 21 NGYKILQDINFTIKPNEIVTLI-GPNGSGKSTIAKLIT 57
++ +DI+ + + LI GPNG+GKS+I IT
Sbjct: 9 KNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAIT 46
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 31.8 bits (72), Expect = 0.16
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 30 NFTIKPNEIVTLIGPNGSGKST-IAKL 55
N ++ ++ L+GP G GK+T +AKL
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTTTLAKL 223
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is
a important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 31.3 bits (71), Expect = 0.25
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
+ LIG G+GK+T+ +L+
Sbjct: 1 NIVLIGMMGAGKTTVGRLL 19
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 31.3 bits (71), Expect = 0.26
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 21 NGYKILQDINFTIKPNEI------VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
N YK +N +++ + LIGP GSGK+ +A+ + I+
Sbjct: 79 NHYK---RLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE 135
Query: 75 VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNI---KDLSGGE 131
GYV + V EN L L L++ + + ++ I D ++ I + + N +D+SG
Sbjct: 136 AGYVGEDV--ENIL-LKLLQAADYDVERAERGIIYI-DEIDKIARKSENPSITRDVSGEG 191
Query: 132 FQRALL 137
Q+ALL
Sbjct: 192 VQQALL 197
>gnl|CDD|36140 KOG0922, KOG0922, KOG0922, DEAH-box RNA helicase [RNA processing
and modification].
Length = 674
Score = 31.0 bits (70), Expect = 0.32
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKST 51
YK I + ++ N+++ +IG GSGKST
Sbjct: 53 YKYRDQILYAVEDNQVLIVIGETGSGKST 81
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 30.6 bits (69), Expect = 0.34
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 39 VTLIGPNGSGKSTIAKLIT 57
+ ++GP G+GKST+AK +
Sbjct: 3 ILILGPPGAGKSTLAKKLA 21
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the
development of this type of cancer.
Length = 203
Score = 30.7 bits (70), Expect = 0.37
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 39 VTLIGPNGSGKSTI-AKLITGIIKPTIGSVK 68
V L+GP+ SGK+ + KL TG + T+ S++
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKYRSTVTSIE 33
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 30.6 bits (69), Expect = 0.42
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+ ++G +GSGKST+ K +
Sbjct: 1 IIVVMGVSGSGKSTVGKAL 19
>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 30.6 bits (69), Expect = 0.45
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLI 56
N + LIG G+GKSTI + +
Sbjct: 1 RNMNIVLIGFMGAGKSTIGRAL 22
>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 29.8 bits (67), Expect = 0.59
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIK 61
+K ++V L G G+GK+T+ + GI K
Sbjct: 22 LKAGDVVLLSGDLGAGKTTLVR---GIAK 47
>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain
is found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family
also includes the RecF and RecN proteins that are
involved in DNA metabolism and recombination.
Length = 1162
Score = 29.9 bits (67), Expect = 0.62
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 41 LIGPNGSGKSTI 52
++GPNGSGKS I
Sbjct: 28 IVGPNGSGKSNI 39
Score = 29.2 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALL-----RKPN-LLVLDE 152
GK +N+ +LSGGE + L+A AL+ +P +LDE
Sbjct: 1065 SARPPGKGVKNLDNLSGGE--KTLVALALIFAIQKYRPAPFYLLDE 1108
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.0 bits (67), Expect = 0.66
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 42 IGPNGSGKSTI 52
+GPNGSGKS I
Sbjct: 30 VGPNGSGKSNI 40
>gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
the single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B'
motif, and a motif with homology to the signature
sequence of the ATP-binding cassette (ABC) family of
ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18)..
Length = 213
Score = 29.7 bits (67), Expect = 0.67
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 41 LIGPNGSGKSTIAKLI 56
+IGPNGSGKS+I I
Sbjct: 28 IIGPNGSGKSSIVCAI 43
>gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome
protein SMC5/Spr18, SMC superfamily [Chromatin
structure and dynamics, Cell cycle control, cell
division, chromosome partitioning, Replication,
recombination and repair].
Length = 1072
Score = 29.5 bits (66), Expect = 0.73
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 41 LIGPNGSGKSTIA 53
+IGPNGSGKS+I
Sbjct: 47 IIGPNGSGKSSIV 59
>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
(SMC) proteins are essential for successful chromosome
transmission during replication and segregation of the
genome in all organisms. SMCs are generally present as
single proteins in bacteria, and as at least six
distinct proteins in eukaryotes. The proteins range in
size from approximately 110 to 170 kDa, and each has
five distinct domains: amino- and carboxy-terminal
globular domains, which contain sequences characteristic
of ATPases, two coiled-coil regions separating the
terminal domains , and a central flexible hinge. SMC
proteins function together with other proteins in a
range of chromosomal transactions, including chromosome
condensation, sister-chromatid cohesion, recombination,
DNA repair, and epigenetic silencing of gene
expression..
Length = 178
Score = 29.4 bits (66), Expect = 0.85
Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 29/177 (16%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMR 94
N ++GPNGSGKS I I ++G + + L L
Sbjct: 21 SNSFNAIVGPNGSGKSNIVDAI---------------CFVLGG--KAAKLRRGSLLFLAG 63
Query: 95 FMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALL-------RKPNL 147
+ +S V D+ + + + LSGGE ++L A AL+ P
Sbjct: 64 GGVKAGINS-ASVEITFDKSYFLVLQGKVEQILSGGE--KSLSALALIFALQEIKPSP-F 119
Query: 148 LVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNR 203
VLDE +D + ++I + + T I++ A V+ ++
Sbjct: 120 YVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFVHGV 176
>gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction
only].
Length = 733
Score = 29.3 bits (65), Expect = 0.86
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83
K L+ I K + +V L P G GK T A LI + + + ++ +P +
Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGK-TEASLILALAL--LDEKIKLKSRVIYVLPFRTI 258
Query: 84 IE 85
IE
Sbjct: 259 IE 260
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 29.3 bits (66), Expect = 0.88
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIG 65
++ L GP+G GKST+ K + P G
Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG 28
>gnl|CDD|30189 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield
adenosine diphosphates (ADP). This enzyme is required
for the biosynthesis of ADP and is essential for
homeostasis of adenosine phosphates..
Length = 194
Score = 29.4 bits (66), Expect = 0.98
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
+ L+GP GSGK T A+ +
Sbjct: 1 RILLLGPPGSGKGTQAERL 19
>gnl|CDD|144099 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16. This family
includes small ribosomal subunit S9 from prokaryotes and
S16 from eukaryotes.
Length = 121
Score = 29.3 bits (67), Expect = 1.0
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 22/87 (25%)
Query: 81 KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF--Q----- 133
K+TI N PL + R +L+ L+ +GK++ + + GG Q
Sbjct: 18 KITI-NGKPLEEY----FPNETLRMKILEPLELTGTLGKFDIVVT-VKGGGISGQAGAIR 71
Query: 134 ----RALLA-----KALLRKPNLLVLD 151
RAL+A + L+K LL D
Sbjct: 72 LAIARALVAYDPELRPELKKAGLLTRD 98
>gnl|CDD|33185 COG3378, COG3378, Predicted ATPase [General function prediction
only].
Length = 517
Score = 29.2 bits (65), Expect = 1.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 38 IVTLIGPNGSGKSTIAKLITGII 60
+ L GP G+GKST LI+ ++
Sbjct: 232 LFWLYGPGGNGKSTFVDLISNLL 254
>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
of the Holliday junction resolvase [Replication,
recombination and repair].
Length = 554
Score = 29.3 bits (65), Expect = 1.1
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 33 IKPNEIVTLI--GPNGSGKSTIAKLIT 57
I+ N I ++I GP G+GK+T+A+LI
Sbjct: 157 IEQNRIPSMILWGPPGTGKTTLARLIA 183
>gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 29.2 bits (66), Expect = 1.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
+V ++G G GK+T+AK I
Sbjct: 21 VVGIVGMGGVGKTTLAKQI 39
>gnl|CDD|31564 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 29.2 bits (65), Expect = 1.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
+ I I+ ++GP GK+T+ KL+ + I
Sbjct: 28 RLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEEI 65
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 29.0 bits (65), Expect = 1.2
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 36 NEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
+ L+G +G GKST+ + + G +
Sbjct: 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEI 192
>gnl|CDD|30898 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 29.1 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-IAKL 55
+I KP I+ +G NG GK+T IAKL
Sbjct: 130 PLEIPKEKKPFVIL-FVGVNGVGKTTTIAKL 159
>gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex,
RAD17/RAD24 component [Energy production and conversion,
Replication, recombination and repair].
Length = 634
Score = 28.9 bits (64), Expect = 1.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
+ I+ L GP+G GKST K+++ + +
Sbjct: 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQL 138
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 41 LIGPNGSGKSTIAKLITGIIK 61
L GP G+GK+T+A+LI G
Sbjct: 53 LWGPPGTGKTTLARLIAGTTN 73
>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 28.7 bits (64), Expect = 1.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
++T+ G GSGK+T+A+ +
Sbjct: 2 VITISGLPGSGKTTVAREL 20
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 41 LIGPNGSGKSTIAKLI 56
L GP G+GK+T+AK +
Sbjct: 3 LYGPPGTGKTTLAKAV 18
>gnl|CDD|30190 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP)..
Length = 200
Score = 28.7 bits (64), Expect = 1.5
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 38 IVTLIGPNGSGKSTIAKLITGIIKP 62
+ G +G+GK+T+ +L+ ++
Sbjct: 2 FIVFEGIDGAGKTTLIELLAERLEA 26
>gnl|CDD|145608 pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic
protein and predicted ATPase that is induced by
phosphate starvation.
Length = 205
Score = 28.6 bits (65), Expect = 1.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 33 IKPNEIVTLIGPNGSGKSTIA 53
I+ N+IV IGP G+GK+ +A
Sbjct: 16 IRKNDIVFGIGPAGTGKTYLA 36
>gnl|CDD|73295 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate..
Length = 69
Score = 28.8 bits (64), Expect = 1.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 38 IVTLIGPNGSGKSTIAKLIT 57
I+ + G +GSGKST+AK +
Sbjct: 1 IIAITGGSGSGKSTVAKKLA 20
>gnl|CDD|144151 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 28.7 bits (65), Expect = 1.7
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 38 IVTLIGPNGSGKST-IAKL 55
++ L+G GSGK+T IAKL
Sbjct: 3 VILLVGLQGSGKTTTIAKL 21
>gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 28.7 bits (64), Expect = 1.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 38 IVTLIGPNGSGKSTIAKLITGIIKP 62
I+ + G +GSGK+T+AK ++ +
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGV 34
>gnl|CDD|35313 KOG0090, KOG0090, KOG0090, Signal recognition particle receptor,
beta subunit (small G protein superfamily)
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 238
Score = 28.4 bits (63), Expect = 1.7
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 39 VTLIGPNGSGKSTI-AKLITGIIKPTIGSVK 68
V L+G + SGK+++ +LITG + T+ S++
Sbjct: 41 VLLVGLSDSGKTSLFTQLITGSHRGTVTSIE 71
>gnl|CDD|35955 KOG0736, KOG0736, KOG0736, Peroxisome assembly factor 2 containing
the AAA+-type ATPase domain [Posttranslational
modification, protein turnover, chaperones].
Length = 953
Score = 28.4 bits (63), Expect = 1.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80
++ + L GP G+GK+ +AK + SVK P+L+ YV Q
Sbjct: 702 LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK-GPELLNMYVGQ 748
>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
protein 1 (sister chromatid cohesion complex Cohesin,
subunit SMC1) [Cell cycle control, cell division,
chromosome partitioning].
Length = 1141
Score = 28.3 bits (63), Expect = 1.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 32 TIKPNEIVT-LIGPNGSGKSTIAKLITGII--KPTIGSVKRHPQLIVGYVPQKV 82
I P + T +IGPNGSGKS + I+ ++ K + V LI G +K
Sbjct: 20 VIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIYGKPIRKP 73
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases..
Length = 151
Score = 28.3 bits (63), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 41 LIGPNGSGKSTIAKLI 56
L GP G+GK+T+A+ I
Sbjct: 24 LYGPPGTGKTTLARAI 39
>gnl|CDD|38564 KOG3354, KOG3354, KOG3354, Gluconate kinase [Carbohydrate
transport and metabolism].
Length = 191
Score = 28.4 bits (63), Expect = 2.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 29 INFTIKP-NEIVTLIGPNGSGKSTIAKLI 56
+ T+ P ++ ++G +GSGKSTI K +
Sbjct: 4 KHKTMGPFKYVIVVMGVSGSGKSTIGKAL 32
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 28.1 bits (63), Expect = 2.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTI--AKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83
L +N+ ++P I + GP G GKS + L +I+P P+ + PQK
Sbjct: 78 LPSLNYGLQPV-IGVVYGPTGCGKSQLLRNLLSCQLIQPI-------PETVFFITPQKDM 129
Query: 84 I 84
I
Sbjct: 130 I 130
>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication,
recombination, and repair].
Length = 845
Score = 28.0 bits (62), Expect = 2.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKST 51
+ +I I+ N++V ++G GSGK+T
Sbjct: 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTT 80
>gnl|CDD|30474 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 27.9 bits (62), Expect = 2.5
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--RHP 71
+ + G +G+GK+T A+L+ ++ V R P
Sbjct: 5 FIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREP 40
>gnl|CDD|35870 KOG0651, KOG0651, KOG0651, 26S proteasome regulatory complex,
ATPase RPT4 [Posttranslational modification, protein
turnover, chaperones].
Length = 388
Score = 28.0 bits (62), Expect = 2.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56
IKP + + L GP G+GK+ +A+ +
Sbjct: 163 IKPPKGLLLYGPPGTGKTLLARAV 186
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G
in the GTP form binds to the ribosome, primarily
through the interaction of its EF-Tu-like domain with
the 50S subunit. The binding of EF-G to the ribosome
in this manner stimulates the GTPase activity of EF-G.
On GTP hydrolysis, EF-G undergoes a conformational
change that forces its arm deeper into the A site on
the 30S subunit. To accommodate this domain, the
peptidyl-tRNA in the A site moves to the P site,
carrying the mRNA and the deacylated tRNA with it. The
ribosome may be prepared for these rearrangements by
the initial binding of EF-G as well. The dissociation
of EF-G leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 27.9 bits (63), Expect = 2.7
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 39 VTLIGPNGSGKSTIAKLI---TGIIKPTIGSVKR 69
+ L+G +GSGK+T+A+ + TG I +GSV+
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI-DRLGSVED 34
>gnl|CDD|33396 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 27.6 bits (61), Expect = 2.8
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 5 LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKS-TIAKLITGIIKPT 63
++ + + + + L+ + T K V L+G G+GKS I L G +K
Sbjct: 8 NNVLKGLLGLPSLLSERILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEV 67
>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 27.6 bits (61), Expect = 2.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 34 KPNEIVTLIGPNGSGKST 51
+P ++ + GP GSGK+T
Sbjct: 256 RPQGLILVTGPTGSGKTT 273
>gnl|CDD|36180 KOG0962, KOG0962, KOG0962, DNA repair protein RAD50, ABC-type
ATPase/SMC superfamily [Replication, recombination and
repair].
Length = 1294
Score = 27.6 bits (61), Expect = 3.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 39 VTLI-GPNGSGKSTIAKLI----TGIIKP 62
+TLI G NG+GK+TI + + TG + P
Sbjct: 29 LTLIVGANGTGKTTIIECLKYATTGELPP 57
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 27.7 bits (62), Expect = 3.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 30 NFTIKPNEI---VTLIGPNGSGKSTIAKLITG 58
FT +I V L+GP G+GK+ +AK I G
Sbjct: 207 RFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238
>gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein
[General function prediction only].
Length = 398
Score = 27.6 bits (61), Expect = 3.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLIT 57
+V ++GP SGKST+ +
Sbjct: 70 AGKVGVVMVVGPVDSGKSTLTTYLA 94
>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 27.4 bits (61), Expect = 3.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
++ L GP+G GKST+ K +
Sbjct: 6 LIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|32375 COG2192, COG2192, Predicted carbamoyl transferase, NodU family
[Posttranslational modification, protein turnover,
chaperones].
Length = 555
Score = 27.6 bits (61), Expect = 3.3
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 165 LYELITSVRQSTGCGILL-ISHNLH---MVMASTDTVICL 200
Y L+ + ++ TG G+LL S N+H +V + D +
Sbjct: 497 YYGLLRAFKERTGVGVLLNTSFNVHGEPIVCSPADAIRTF 536
>gnl|CDD|58497 cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like
subfamily of SGNH-hydrolases. Platelet-activating factor
(PAF) and PAF-AH are key players in inflammation and in
atherosclerosis. PAF-AH is a calcium independent
phospholipase A2 which exhibits strong substrate
specificity towards PAF, hydrolyzing an acetyl ester at
the sn-2 position. PAF-AH also degrades a family of
oxidized PAF-like phospholipids with short sn-2
residues. In addition, PAF and PAF-AH are associated
with neural migration and mammalian reproduction..
Length = 214
Score = 27.5 bits (61), Expect = 3.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+ P +V LIG N G +T A+ I I + ++
Sbjct: 88 VNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREK 125
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 27.4 bits (60), Expect = 4.0
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 35 PNEIVTLIGPNGSGKSTIAK-LITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
P IV ++GP G+GKST+ + L+ K TI + R P +V +++T
Sbjct: 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI-RGPITVVSGKTRRITF 117
>gnl|CDD|30812 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 27.1 bits (59), Expect = 4.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLI 56
++P + V L GP G+GK+ +AK +
Sbjct: 270 KLGLRPPKGVLLYGPPGTGKTLLAKAV 296
>gnl|CDD|36142 KOG0924, KOG0924, KOG0924, mRNA splicing factor ATP-dependent RNA
helicase [RNA processing and modification].
Length = 1042
Score = 27.3 bits (60), Expect = 4.2
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 27/134 (20%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKLI-------TGIIKPTIGSVKRHPQLIVGYV 78
+ I+ N++V ++G GSGK+T +A+ + G+I T
Sbjct: 362 DQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCT--------------Q 407
Query: 79 PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLA 138
P++V +S+ + + M + D + R + + IK ++ G R L
Sbjct: 408 PRRVA-----AISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLK 462
Query: 139 KALLRKPNLLVLDE 152
L K +++++DE
Sbjct: 463 DRDLDKYSVIIMDE 476
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 27.2 bits (60), Expect = 4.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 41 LIGPNGSGKSTI 52
++GPNGSGKS +
Sbjct: 113 IVGPNGSGKSNV 124
>gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA
mismatch repair by recognizing mispaired and unpaired
bases embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the
MutS family also possess a conserved ATPase activity
that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 202
Score = 27.1 bits (60), Expect = 4.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLI 56
+ + ++ + GPN GKST + I
Sbjct: 23 DINLGSGRLLLITGPNMGGKSTYLRSI 49
>gnl|CDD|32985 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 27.2 bits (60), Expect = 4.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 38 IVTLIGPNGSGKSTIAKLITGIIKPT 63
V ++G SGKST+ + I T
Sbjct: 10 TVAILGGESSGKSTLVNKLANIFNTT 35
>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
the single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B'
motif, and a motif with homology to the signature
sequence of the ATP-binding cassette (ABC) family of
ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18)..
Length = 247
Score = 27.1 bits (60), Expect = 4.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 41 LIGPNGSGKSTI 52
+IGPNGSGKS +
Sbjct: 27 IIGPNGSGKSNL 38
>gnl|CDD|33381 COG3581, COG3581, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 420
Score = 27.2 bits (60), Expect = 4.6
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVI------CLNNRICYQGPPQTIKDN 216
S+ TG G L L ++ + D VI C+ N I +G + +K +
Sbjct: 310 SLGNKTGEGWFLTGEMLELIESGVDNVICLQPFGCMPNHIVSKGMIKGLKRD 361
>gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is
the main terminal branch of the general secretory
pathway (GSP). It is responsible for the export the
majority of Gram-negative bacterial exoenzymes and
toxins. PulE is a cytoplasmic protein of the GSP, which
contains an ATP binding site and a tetracysteine motif.
This subgroup also includes PillB and HofB..
Length = 264
Score = 27.1 bits (60), Expect = 4.6
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKST 51
++ L +I + + KP+ I+ + GP GSGK+T
Sbjct: 54 NQILDLEKLGLKPENLEIFRKL--LEKPHGIILVTGPTGSGKTT 95
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 27.2 bits (60), Expect = 4.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST 51
L + ++ E++ L G GK+T
Sbjct: 20 LNKLTKGLRKGELIILTAGTGVGKTT 45
>gnl|CDD|114021 pfam05272, VirE, Virulence-associated protein E. This family
contains several bacterial virulence-associated protein
E like proteins.
Length = 198
Score = 27.0 bits (60), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITG 58
K + ++ L G GSGKST K + G
Sbjct: 49 CKFDHVLILQGAQGSGKSTFLKKLGG 74
>gnl|CDD|111445 pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of
septum formation in eukaryotes, bacteria, and archaea.
Length = 193
Score = 26.9 bits (60), Expect = 5.0
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 186 NLHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIR 221
+ +++ + DTV+ L RI G P+ ++ E +R
Sbjct: 63 DNALIIGA-DTVVILGGRI--LGKPKDKEEAREMLR 95
>gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction
only].
Length = 300
Score = 26.9 bits (59), Expect = 5.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
IV + GP GSGKST++ LI
Sbjct: 52 IVGISGPQGSGKSTLSALI 70
>gnl|CDD|35948 KOG0729, KOG0729, KOG0729, 26S proteasome regulatory complex,
ATPase RPT1 [Posttranslational modification, protein
turnover, chaperones].
Length = 435
Score = 26.9 bits (59), Expect = 5.2
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----IGSVKRHPQLIVGYVPQKVTI 84
+N I P + V L GP G+GK+ A+ + IGS +L+ YV + +
Sbjct: 204 VNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS-----ELVQKYVGEGARM 258
Query: 85 ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGG--EFQRALL 137
L M ++ + D ++ IG D +GG E QR +L
Sbjct: 259 VREL---------FEMARTKKACIIFFDEIDAIG--GARFDDGAGGDNEVQRTML 302
>gnl|CDD|38288 KOG3078, KOG3078, KOG3078, Adenylate kinase [Nucleotide transport
and metabolism].
Length = 235
Score = 26.8 bits (59), Expect = 5.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 41 LIGPNGSGKSTIAKLIT 57
L+G GSGK T A +T
Sbjct: 20 LLGAPGSGKGTQAPRLT 36
>gnl|CDD|37019 KOG1808, KOG1808, KOG1808, AAA ATPase containing von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 1856
Score = 26.9 bits (59), Expect = 5.4
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72
S +F ++ +L+ I ++ NE + L+G G GK+++ + + ++ + V Q
Sbjct: 42 GSTFAFTRSVLTLLERIAVCVQHNEPLLLVGETGVGKTSVVQYLAVLLGFKLTVVNVSQQ 101
Query: 73 -----LIVGYVPQKVTIENTLPLSLMR 94
L+ GY P V +LPLS
Sbjct: 102 SDSSDLLGGYKP--VNDYLSLPLSKPF 126
>gnl|CDD|73035 cd03276, ABC_SMC6_euk, Eukaryotic SMC6 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
the single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B'
motif, and a motif with homology to the signature
sequence of the ATP-binding cassette (ABC) family of
ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18)..
Length = 198
Score = 26.7 bits (59), Expect = 5.4
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
I+L N H++ I F + N IV G NGSGKS I +T +
Sbjct: 4 ITLKNFMCHRHL-----QIEFGPRVNFIV---GNNGSGKSAI---LTALT 42
>gnl|CDD|35871 KOG0652, KOG0652, KOG0652, 26S proteasome regulatory complex,
ATPase RPT5 [Posttranslational modification, protein
turnover, chaperones].
Length = 424
Score = 26.9 bits (59), Expect = 5.5
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
N I+P + V + GP G+GK+ +A+ T + PQL+ ++
Sbjct: 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLA-GPQLVQMFI 246
>gnl|CDD|146043 pfam03215, Rad17, Rad17 cell cycle checkpoint protein.
Length = 490
Score = 26.9 bits (59), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
I+ L GP+G GKST K+++ + I
Sbjct: 43 NKQLILLLTGPSGCGKSTTVKVLSKELGIEI 73
>gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 26.5 bits (58), Expect = 5.9
Identities = 35/159 (22%), Positives = 52/159 (32%), Gaps = 19/159 (11%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTL 88
IN I + IGPN SGKST + + I S Y K E
Sbjct: 14 INGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLACAEYSRNKKWEEYLQ 73
Query: 89 PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148
L L + + V + RV + + + SG E + + R+
Sbjct: 74 WLQL---------RAVNVVEKGFRRVFGLNLQDLTTRGASGEELILTVKHR---RERVKY 121
Query: 149 VLDEPLQGIDFP-------GELSLYELITSVRQSTGCGI 180
+L PL + F G ++Y L +R G
Sbjct: 122 ILKWPLVSLKFEYLKAERRGPRNVYALFDYLRSRNLLGA 160
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 26.7 bits (59), Expect = 5.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 14 SNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIA 53
N +H + + + ++ G +GSGKSTIA
Sbjct: 1 ENIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIA 40
>gnl|CDD|35949 KOG0730, KOG0730, KOG0730, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 693
Score = 26.8 bits (59), Expect = 6.1
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 31 FTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
F I P + V L GP G GK+ +AK + SVK P+L YV
Sbjct: 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK-GPELFSKYV 509
>gnl|CDD|32910 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 26.6 bits (58), Expect = 6.2
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 38 IVTLIGPNGSGKS-TIAKLITGII 60
+ TL G NG+GKS T+A +T +I
Sbjct: 29 VTTLSGGNGAGKSTTMAAFVTALI 52
>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
[Function unknown].
Length = 491
Score = 26.6 bits (58), Expect = 6.2
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 8 TPLISLSNTSFHKNGYKILQD-INFTIKPNEIVTLIGPNGSGKSTIAKLITG 58
TPLI N F+ N K+L +FT+ + ++G GSGKST+ L+
Sbjct: 165 TPLIV-DNGIFNDNARKLLHKTTDFTV-----IGVLGGQGSGKSTLLSLLAA 210
>gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.
This uncharacterized family contains a P-loop.
Length = 123
Score = 26.5 bits (59), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIK 61
K ++V L G G+GK+T + G+ K
Sbjct: 13 KAGDVVLLSGDLGAGKTTFVR---GLAK 37
>gnl|CDD|35951 KOG0732, KOG0732, KOG0732, AAA+-type ATPase containing the
bromodomain [Posttranslational modification, protein
turnover, chaperones].
Length = 1080
Score = 26.5 bits (58), Expect = 6.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAK 54
NF I P V GP G+GK+ +A+
Sbjct: 293 NFNITPPRGVLFHGPPGTGKTLMAR 317
>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 26.5 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 30 NFTIKPNEIVTLI-GPNGSGKSTIAKLI 56
NF + + TLI GP G+GK+ + +
Sbjct: 429 NFHVGEDVGHTLIIGPTGAGKTVLLSFL 456
>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 26.3 bits (58), Expect = 7.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 41 LIGPNGSGKSTIAKLITGIIKP 62
L+GP G+GK+ +A + G++ P
Sbjct: 203 LVGPPGTGKTMLASRLPGLLPP 224
>gnl|CDD|30813 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 26.4 bits (58), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 39 VTLIGPNGSGKSTIAKLITGI 59
V L+GP G+GK+ +AK + G
Sbjct: 186 VLLVGPPGTGKTLLAKAVAGE 206
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 26.5 bits (58), Expect = 7.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV 78
V GP G+GK+ +AK + K + VK +LI +V
Sbjct: 154 VLFYGPPGTGKTMMAKALANEAKVPLLLVKA-TELIGEHV 192
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1,
and A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 26.5 bits (59), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIK 61
P +V ++GP G GK+T LI ++K
Sbjct: 38 PPLVVAVVGPPGVGKTT---LIKSLVK 61
>gnl|CDD|30887 COG0541, Ffh, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 451
Score = 26.2 bits (58), Expect = 7.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKL 55
++N KP ++ ++G GSGK+T KL
Sbjct: 91 SELNLAKKPPTVILMVGLQGSGKTTTAGKL 120
>gnl|CDD|113093 pfam04310, MukB, MukB N-terminal. This family represents the
N-terminal region of MukB, one of a group of bacterial
proteins essential for the movement of nucleoids from
mid-cell towards the cell quarters (i.e. chromosome
partitioning). The structure of the N-terminal domain
consists of an antiparallel six-stranded beta sheet
surrounded by one helix on one side and by five helices
on the other side. It contains an exposed Walker A loop
in an unexpected helix-loop-helix motif (in other
proteins, Walker A motifs generally adopt a P loop
conformation as part of a strand-loop-helix motif
embedded in a conserved topology of alternating helices
and (parallel) beta strands).
Length = 227
Score = 26.1 bits (57), Expect = 7.7
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 36 NEIVTLIGPNGSGKS-TIAKLITGII 60
+ TL G NG+GKS T+A IT +I
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFITALI 52
>gnl|CDD|31413 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase
subunit [Posttranslational modification, protein
turnover, chaperones].
Length = 444
Score = 26.3 bits (58), Expect = 7.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
+ P I+ +IGP G GK+ IA+ + + V+ VGYV + V
Sbjct: 48 VTPKNIL-MIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96
>gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 26.4 bits (58), Expect = 8.0
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKST 51
+L+D+ + +V ++G GSGKST
Sbjct: 118 VLKDL--ALAKRGLVIIVGATGSGKST 142
>gnl|CDD|34258 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 26.1 bits (57), Expect = 8.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 38 IVTLIGPNGSGKSTIAK 54
+V L G +GSGKST AK
Sbjct: 4 LVVLRGASGSGKSTFAK 20
>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyses the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 26.1 bits (58), Expect = 8.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 38 IVTLIGPNGSGKSTIA 53
V G +GSGKSTIA
Sbjct: 4 TVWFTGLSGSGKSTIA 19
>gnl|CDD|48379 cd03115, SRP, The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria
and the endoplasmic reticulum in eukaryotes. SRP
recognizes N-terminal sighnal sequences of newly
synthesized polypeptides at the ribosome. The
SRP-polypeptide complex is then targeted to the
membrane by an interaction between SRP and its cognated
receptor (SR). In mammals, SRP consists of six protein
subunits and a 7SL RNA. One of these subunits is a 54
kd protein (SRP54), which is a GTP-binding protein that
interacts with the signal sequence when it emerges from
the ribosome. SRP54 is a multidomain protein that
consists of an N-terminal domain, followed by a central
G (GTPase) domain and a C-terminal M domain..
Length = 173
Score = 26.2 bits (58), Expect = 8.3
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 38 IVTLIGPNGSGKST-IAKL 55
++ L+G G GK+T AKL
Sbjct: 2 VILLVGLQGVGKTTTAAKL 20
>gnl|CDD|35296 KOG0073, KOG0073, KOG0073, GTP-binding ADP-ribosylation
factor-like protein ARL2 [Intracellular trafficking,
secretion, and vesicular transport, Cytoskeleton].
Length = 185
Score = 26.0 bits (57), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 39 VTLIGPNGSGKSTIAKLITGI----IKPTIGS 66
+ ++G + SGK+TI K + G I PT+G
Sbjct: 19 ILILGLDNSGKTTIVKKLLGEDTDTISPTLGF 50
>gnl|CDD|73000 cd03241, ABC_RecN, RecN ATPase involved in DNA repair; ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 276
Score = 26.3 bits (58), Expect = 8.5
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 125 KDLSGGEFQRALLA-KALL---RKPNLLVLDEPLQGIDFPGELS------LYELITSVRQ 174
K SGGE R +LA KA+L L+ DE GI GE++ L EL
Sbjct: 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGIS--GEVAQAVGKKLKEL------ 220
Query: 175 STGCGILLISH 185
S +L I+H
Sbjct: 221 SRSHQVLCITH 231
>gnl|CDD|133249 cd00066, G-alpha, G protein alpha subunit. The alpha subunit of
G proteins contains the guanine nucleotide binding
site. The heterotrimeric GNP-binding proteins are
signal transducers that communicate signals from many
hormones, neurotransmitters, chemokines, and autocrine
and paracrine factors. Extracellular signals are
received by receptors, which activate the G proteins,
which in turn route the signals to several distinct
intracellular signaling pathways. The alpha subunit of
G proteins is a weak GTPase. In the resting state,
heterotrimeric G proteins are associated at the
cytosolic face of the plasma membrane and the alpha
subunit binds to GDP. Upon activation by a receptor GDP
is replaced with GTP, and the G-alpha/GTP complex
dissociates from the beta and gamma subunits. This
results in activation of downstream signaling pathways,
such as cAMP synthesis by adenylyl cyclase, which is
terminated when GTP is hydrolized and the heterotrimers
reconstitute.
Length = 317
Score = 26.3 bits (59), Expect = 8.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 41 LIGPNGSGKSTIAK 54
L+G SGKSTI K
Sbjct: 5 LLGAGESGKSTILK 18
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 26.0 bits (58), Expect = 8.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 36 NEIVTLIGPNGSGKSTIAKLITG 58
+ L G +G GKST+ +
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
related ATPases involved in archaeal flagella
biosynthesis [Cell motility and secretion /
Intracellular trafficking and secretion].
Length = 312
Score = 26.1 bits (57), Expect = 8.7
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 34/112 (30%)
Query: 41 LIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM 100
+ G SGK+T+ + I P + VTIE+T L L
Sbjct: 148 ICGGTASGKTTLLNALLDFIPP---------------EERIVTIEDTPELKLP------- 185
Query: 101 PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
++ +Q++ R G +++D LL AL ++P+ +++ E
Sbjct: 186 ---HENWVQLVTREGESGSSEVSLED---------LLRAALRQRPDYIIVGE 225
>gnl|CDD|30197 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide
riboside..
Length = 187
Score = 26.0 bits (57), Expect = 8.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 38 IVTLIGPNGSGKSTIAKLITGII 60
IV + G SGK+T+AKL+ I+
Sbjct: 1 IVGISGVTNSGKTTLAKLLQRIL 23
>gnl|CDD|109538 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 196
Score = 26.2 bits (58), Expect = 9.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 38 IVTLIGPNGSGKSTIAKLITGII 60
I+ + G +G+GK+T+A+ I
Sbjct: 1 IIGVAGSSGAGKTTVARTFVSIF 23
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 26.1 bits (58), Expect = 9.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 39 VTLIGPNGSGKSTIAKLI 56
V L G GSGK+T+ + +
Sbjct: 3 VILQGEAGSGKTTLLQKL 20
>gnl|CDD|35471 KOG0250, KOG0250, KOG0250, DNA repair protein RAD18 (SMC family
protein) [Replication, recombination and repair].
Length = 1074
Score = 26.0 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 41 LIGPNGSGKSTIAKLITGII 60
++G NGSGKS I +T +
Sbjct: 67 IVGNNGSGKSAI---LTALT 83
>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 25.8 bits (56), Expect = 9.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 43 GPNGSGKSTIAKLI 56
GP G GK+TIA+++
Sbjct: 45 GPRGVGKTTIARIL 58
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 26.0 bits (57), Expect = 9.9
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
+I L+G +G GKST+ + + G +
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEK 198
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.138 0.396
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,772,083
Number of extensions: 142603
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 352
Length of query: 240
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,297,318
Effective search space: 640300382
Effective search space used: 640300382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)