RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780718|ref|YP_003065131.1| putative high-affinity zinc
uptake system ATP-binding component of ABC transporter protein
[Candidatus Liberibacter asiaticus str. psy62]
(240 letters)
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 255 bits (654), Expect = 6e-69
Identities = 105/234 (44%), Positives = 162/234 (69%)
Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
+T L+SL N S ++L D++ +KP +I+TL+GPNG+GKST+ +++ G++ P G
Sbjct: 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV 60
Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD 126
+KR+ +L +GYVPQK+ ++ TLPL++ RF+ L + ++D+L L RV + ++
Sbjct: 61 IKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQK 120
Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
LSGGE QR LLA+ALL +P LLVLDEP QG+D G+++LY+LI +R+ C +L++SH+
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180
Query: 187 LHMVMASTDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEILAIHNHKHDH 240
LH+VMA TD V+CLN+ IC G P+ + + E+I +FG R E L I+ H H+H
Sbjct: 181 LHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNH 234
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 135 bits (342), Expect = 8e-33
Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 18/218 (8%)
Query: 31 FTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------RHPQLIVGYVPQK--- 81
+ E++ L+GPNG+GK+T+ + I G+I P G+VK +GYVPQ+
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 82 -----VTIENTLPLSLMRFMTLSMPSSRDD---VLQILDRVNLIGKYNRNIKDLSGGEFQ 133
+++ +T+ + D V L RV L +R + +LSGG+ Q
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQ 120
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAS 193
R L+A+AL +P++L+LDEP G+D P + L EL + + G IL+ +H+L MA+
Sbjct: 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA-GTAILMTTHDLAQAMAT 179
Query: 194 TDTVICLNNRICYQGPPQTIKDNAEYIRLFGTRATEIL 231
D V+ LN R+ G PQ ++D A ++ FG + L
Sbjct: 180 CDRVVLLNGRVIADGTPQQLQDPAPWMTTFGVSDSSPL 217
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 108 bits (271), Expect = 2e-24
Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 52/239 (21%)
Query: 11 ISLSNTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
I N SF G + L +++ TI+P E V +IG GSGKST+ KL+ G+ +PT GSV
Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523
Query: 69 R--------HPQLI---VGYVPQKVTI------ENTLPLSLMRFMTLSMPSSRD-DVLQI 110
P + +GYVPQ + +N + L P + D ++L+
Sbjct: 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN---------IALGAPYADDEEILRA 574
Query: 111 LDRVNL--------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
+ + IG+ R+ LSGG+ Q LA+ALLR P +L+LDEP
Sbjct: 575 AELAGVTEFVRRHPDGLDMQIGERGRS---LSGGQRQAVALARALLRDPPILLLDEPTSA 631
Query: 157 IDFPGELSLYELITSVRQ-STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
+D E +++ G ++L++H + + D +I ++N RI GP +
Sbjct: 632 MDNRSE---ERFKDRLKRWLAGKTLVLVTHRTSL-LDLVDRIIVMDNGRIVADGPKDQV 686
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 104 bits (262), Expect = 2e-23
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 11 ISLSNTSF-HKNGYK-ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+S+ N + G K L+ I+F ++ E + +IGP+GSGKST+A+LI GI PT GSV+
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 69 ---------------RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILD 112
+H +GY+PQ V + T+ ++ RF + P + ++
Sbjct: 377 LDGADLKQWDRETFGKH----IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432
Query: 113 RVNLIGK----YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
LI + Y+ I LSGG+ QR LA+AL P L+VLDEP +D GE +
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
L I +++ G +++I+H ++ D ++ L +
Sbjct: 493 LANAIKALKAR-GITVVVITHRPS-LLGCVDKILVLQD 528
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 102 bits (257), Expect = 6e-23
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 26/241 (10%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67
+ LS S+ G I+ ++ T P + L+GPNGSGKST+ +L+ G ++P G+V
Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61
Query: 68 --------KRHPQLIVGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDD---VLQI 110
+R V V Q +T+ + + L + +L S D V +
Sbjct: 62 GVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA 121
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
L R L +R++ LSGGE QR +A+AL ++P LL+LDEP +D +L E +
Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL---ETLA 178
Query: 171 SVRQSTGCGILLIS--HNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFGTRA 227
VR+ G+ +++ H+L++ + D V+ L+ R+ GPP+ + A ++G A
Sbjct: 179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVDA 238
Query: 228 T 228
T
Sbjct: 239 T 239
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 102 bits (256), Expect = 7e-23
Identities = 61/216 (28%), Positives = 108/216 (50%), Gaps = 20/216 (9%)
Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------- 67
T +NG+ L+D +FT+ I L+G NGSGKST+ K + G ++ G +
Sbjct: 13 TVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR 72
Query: 68 KRHPQLIVGYVPQKVTIENTLPLSL-----------MRFMTLSMPSSRDDVLQILDRVNL 116
+ + +V YVPQ ++ + P+ + M ++ + R V L RV++
Sbjct: 73 QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDM 132
Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
+ +R I +LSGG+ +R LA+A+ ++ +++LDEP G+D E + L+ +R
Sbjct: 133 VEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE- 191
Query: 177 GCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT 212
G +L+ +HNL V D + + + GP +T
Sbjct: 192 GKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTET 227
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 102 bits (256), Expect = 8e-23
Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 41/251 (16%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
PL+S+S G + ++N ++ EIV+LIGPNG+GK+T+ +TG KPT G++
Sbjct: 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62
Query: 68 KRHPQLIVGYVPQKV-------TIENTLPLSLMRFMT---------------------LS 99
Q I G ++ T ++ + L R MT L
Sbjct: 63 LLRGQHIEGLPGHQIARMGVVRTFQH---VRLFREMTVIENLLVAQHQQLKTGLFSGLLK 119
Query: 100 MPSSR-------DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
P+ R D L+RV L+ NR +L+ G+ +R +A+ ++ +P +L+LDE
Sbjct: 120 TPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDE 179
Query: 153 PLQGIDFPGE-LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPP 210
P G++ P E L ELI +R +LLI H++ +VM +D + +N G P
Sbjct: 180 PAAGLN-PKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
Query: 211 QTIKDNAEYIR 221
+ I++N + I+
Sbjct: 239 EEIRNNPDVIK 249
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 101 bits (254), Expect = 1e-22
Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 28/223 (12%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------ 74
NG + L++IN I P E V +IGP+G+GKST+ + I +++P+ GS+ I
Sbjct: 13 NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK 72
Query: 75 --------VGY-------VPQKVTIENTLP--LSLMRF--MTLSMPSSRDDV--LQILDR 113
+G + + +EN L L L S D L L+R
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER 132
Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173
V L K + LSGG+ QR +A+AL ++P+L++ DEP+ +D + + + +
Sbjct: 133 VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRIN 192
Query: 174 QSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215
+ G +++ H + + D ++ L I + G P + D
Sbjct: 193 KEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDD 235
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 100 bits (252), Expect = 2e-22
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 33/212 (15%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------K 68
D +FT+ + + G +GSGK+T+ +LI G+ +P G + K
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 69 RHPQLIVGYVPQKVTIENTLPL--SLMRFMTLSMPSSR----DDVLQILDRVNLIGKYNR 122
R +GYV Q+ + L + +L M + PS R + V+++L +L+G+
Sbjct: 75 RR----IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG 130
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
LSGGE QR + +ALL P LL++DEPL +D P + + + + G IL
Sbjct: 131 ---RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 183 ISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
+SH+L V+ D V+ L + R+ GP +
Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 97.1 bits (242), Expect = 3e-21
Identities = 56/213 (26%), Positives = 111/213 (52%), Gaps = 17/213 (7%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS-------VKRHP 71
+K + +NF ++ E+ +GPNG+GK+T +++T +++PT G+ V R P
Sbjct: 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP 61
Query: 72 QLI---VGYVPQKVTIENTLP----LSLM-RFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
+ + +G VPQ +++ L L +M R L + + ++L+ L +R
Sbjct: 62 RKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP 121
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
+ SGG +R +A +L+ +P++L LDEP G+D ++++ I ++++ G ILL
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLT 180
Query: 184 SHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215
+H + D + +++ RI +G P+ +K
Sbjct: 181 THYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 97.1 bits (242), Expect = 3e-21
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-------RHPQLIVGY 77
+ +I+ T+ N + L+GPNG+GKST+ K+ITGI++PT G + R +G
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74
Query: 78 VPQKVTIENTLPLS---LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134
+ + + L + L +P SR + ++L+ V+L + K S G QR
Sbjct: 75 LIESPPLYENLTARENLKVHTTLLGLPDSR--IDEVLNIVDLTNTGKKKAKQFSLGMKQR 132
Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAST 194
+A ALL P LL+LDEP G+D G L ELI S + G ++L SH L V
Sbjct: 133 LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLA 191
Query: 195 DTV-ICLNNRICYQG 208
D + I + YQG
Sbjct: 192 DHIGIISEGVLGYQG 206
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 97.0 bits (242), Expect = 3e-21
Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 19/220 (8%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68
+ ++ SF + L D++FT++P E V L+GPNG+GKST+ L+T + G +
Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61
Query: 69 -----RHPQLI---VGYVPQKVTIENTLPLSLMRFMT-------LSMPSSRDDVLQILDR 113
R P+ +G V Q+ T++ L LS+ + + LS +R+ + +L R
Sbjct: 62 GHDLRRAPRAALARLGVVFQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLAR 119
Query: 114 VNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173
+ L + + +++L+GG +R +A+ALL +P LL+LDEP G+D ++ + ++
Sbjct: 120 LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179
Query: 174 QSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI 213
+ G +L +H + + A V+ R+ G +
Sbjct: 180 RDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 95.9 bits (239), Expect = 7e-21
Identities = 66/217 (30%), Positives = 109/217 (50%), Gaps = 27/217 (12%)
Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVG 76
F N ++ ++N TIK +VTL+GP+G GK+T+ +L+ G+ KPT G + I G
Sbjct: 15 RFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-----FIDG 67
Query: 77 YVPQKVTIENT-----------LP-LSL-------MRFMTLSMPSSRDDVLQILDRVNLI 117
+I+ P +SL ++ + + + V + L+ V+L
Sbjct: 68 EDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA 127
Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
G +R + +SGG+ QR LA+AL+ KP +L+ DEPL +D S+ E I ++Q
Sbjct: 128 GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN 187
Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
L ++H+ A +DTVI +N +I G PQ +
Sbjct: 188 ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 95.6 bits (238), Expect = 9e-21
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 25/233 (10%)
Query: 8 TPLISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
+I N SF L+D++F I + +++G NGSGKSTIAKL+ GI K G
Sbjct: 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 66 SVKRHPQLI-----------VGYVPQKVTIENTLPLSLMRF--------MTLSMPSSRDD 106
+ + Q I +G V Q +N S++++ +
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNP--DNQFVGSIVKYDVAFGLENHAVPYDEMHRR 122
Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
V + L +V+++ + + LSGG+ QR +A L P++++LDE +D +L
Sbjct: 123 VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQ-GPPQTIKDNAE 218
+L+ V+ I+ I+H+L M + D VI +N Y+ G P I D+AE
Sbjct: 183 DLVRKVKSEHNITIISITHDLSEAMEA-DHVIVMNKGTVYKEGTPTEIFDHAE 234
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 95.2 bits (237), Expect = 1e-20
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
++ +S+ G L+DIN T++ E++ ++GP+G GK+T+ LI G + GS+
Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60
Query: 70 HPQLIVGYVPQKVTI---ENTLP---------LSLMRFMTLSMPSSRDDVLQILDRVNLI 117
+ + G ++ + E LP L + + + Q+L +V L
Sbjct: 61 DGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLKKVGLE 119
Query: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID-FPGELSLYELITSVRQST 176
G R I LSGG+ QR +A+AL P LL+LDEP +D F E + L+ + Q T
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE-QMQTLLLKLWQET 178
Query: 177 GCGILLISHNL-HMVMASTDTVI 198
G +LLI+H++ V +T+ V+
Sbjct: 179 GKQVLLITHDIEEAVFMATELVL 201
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 95.3 bits (237), Expect = 1e-20
Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 23/201 (11%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------------- 67
+L +++ +I+ E V L+G +G GKST+A+L+ G+ KP G+V
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 68 -KRHPQLI----VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
+R QL+ V ++T+ + L +L + + ++LD V L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 123 NI-KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
+ + LSGG+ QR +A+AL KP L+VLDE + +D + + EL+ ++Q+ G L
Sbjct: 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205
Query: 182 LISHNLHMVMASTDTVICLNN 202
I+H+L +V + V ++
Sbjct: 206 FITHDLRLVQSFCQRVAVMDK 226
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 94.9 bits (236), Expect = 2e-20
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
P+I +S+ S +L ++ +++ +V L+GPNG+GK+T+ + I G + PT G+V
Sbjct: 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 69 -----------RHPQLIVGYVPQKVTI------ENTLPLS----LMRFMTLSMPSSRDDV 107
R V VPQ ++ + + RF T + + R V
Sbjct: 62 VAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAV 120
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
+ ++R + +R + LSGGE QR LLA+AL + +L+LDEP +D ++ E
Sbjct: 121 ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTI 213
L+ + G + H+L + D ++ L + R+ GPP +
Sbjct: 181 LVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 94.8 bits (236), Expect = 2e-20
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 38/219 (17%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----KRHPQLIVGYVPQ 80
+L+ + FT+ P E+V L+GP+GSGKST+A L+ + +PT G V Q Y+ +
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 81 KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---------------NLIGK----YN 121
+V + P+ S R+++ L + I + Y+
Sbjct: 556 QVALVGQEPVLFSG-------SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYD 608
Query: 122 RNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
+ + LSGG+ QR +A+AL+RKP +L+LDE +D E L E R
Sbjct: 609 TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES----RSRAS 664
Query: 178 CGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDN 216
+LLI+H L V + ++ + G + + ++
Sbjct: 665 RTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 94.5 bits (236), Expect = 2e-20
Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 27/229 (11%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
++ N S G +L D++ T++P E+V ++GPNG+GKST+ + ++G + P G V+
Sbjct: 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 69 RHPQLIVGY-----------VPQKVTIENTLPLS-----LMRFMTLSMPSSRDD--VLQI 110
+ + + + +PQ ++ + P + M + + DD V
Sbjct: 61 LNGRPLADWSPAELARRRAVLPQHSSL--SFPFTVEEVVAMGRAPHGLSRAEDDALVAAA 118
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLR------KPNLLVLDEPLQGIDFPGELS 164
L +V+L R+ LSGGE QR LA+ L + P L+LDEP +D +
Sbjct: 119 LAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQT 212
+ L + G ++++ H+L++ D ++ L+ R+ G P
Sbjct: 179 VLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 94.0 bits (234), Expect = 3e-20
Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 30/203 (14%)
Query: 9 PLISLSNTSFHKNGYKI-LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-- 65
P + L + SF G L ++ + P E V ++GP+GSGKST+ L+TG++ P G
Sbjct: 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392
Query: 66 --------SVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRVNL 116
S++ + + Q + +T ++ + L P ++ +++ L+RV L
Sbjct: 393 TLDGVSVSSLQDELRRRISVFAQDAHLFDT---TVRDNLRLGRPDATDEELWAALERVGL 449
Query: 117 IGKYNRNIKD------------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
+ R++ D LSGGE QR LA+ALL +L+LDEP + +D E
Sbjct: 450 -ADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESE 508
Query: 165 LYELITSVRQSTGCGILLISHNL 187
L E + + +G +++I+H+L
Sbjct: 509 LLEDLLAA--LSGKTVVVITHHL 529
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 93.9 bits (234), Expect = 3e-20
Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 31/217 (14%)
Query: 9 PLISLSNTSFHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
P + S S G L+ ++FT+ P E V L+GP+G+GKST+ L+ G + PT GS
Sbjct: 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 67 VK-----------RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMP-SSRDDVLQILDRV 114
+ + + +VPQ + ++ + L+ P +S ++ + L+R
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFL---FAGTIAENIRLARPDASDAEIRRALERA 435
Query: 115 NLI-------GKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
L + I + LSGG+ QR LA+A LR LL+LDEP +D E
Sbjct: 436 GLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
+ E + ++ Q G +LL++H L + D ++ L
Sbjct: 496 LVTEALRALAQ--GRTVLLVTHRLA-LAERADRIVVL 529
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 93.7 bits (234), Expect = 3e-20
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLS 91
I E++ ++GPNG GK+T AKL+ G++KP G V P+L + Y PQ + + +
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD--PELKISYKPQYIKPDYDGTVE 418
Query: 92 -LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVL 150
L+R +T + SS +I+ + L ++N+KDLSGGE QR +A L R +L +L
Sbjct: 419 DLLRSITDDLGSSYYKS-EIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477
Query: 151 DEP 153
DEP
Sbjct: 478 DEP 480
Score = 67.1 bits (165), Expect = 4e-12
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 37/152 (24%)
Query: 32 TIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP-------------------- 71
K ++ ++GPNG GK+T K+++G + P +G + P
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154
Query: 72 ----QLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYN 121
++ V + PQ KV L L R + ++++R+ L +
Sbjct: 155 LYNGEIKVVHKPQYVDLIPKVFKGKVREL-------LKKVDERGKLDEVVERLGLENILD 207
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
R+I +LSGGE QR +A ALLR + DEP
Sbjct: 208 RDISELSGGELQRVAIAAALLRDADFYFFDEP 239
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 93.1 bits (232), Expect = 6e-20
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 19/230 (8%)
Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
S++PL+ L S +G +++ +++ TI E +TL+GP+G GK+T+ +LI G
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRF--MT--------LSM---PSS--RD 105
P G + Q I + + NT+ S F MT L M P++
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHV-NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP 123
Query: 106 DVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
V++ L V L R LSGG+ QR +A+A++ KP +L+LDE L +D+ +
Sbjct: 124 RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183
Query: 166 -YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
EL R+ G + ++H+ + +D ++ + + RI G P+ I
Sbjct: 184 QNELKALQRK-LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 92.9 bits (231), Expect = 7e-20
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 36/215 (16%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT------- 63
I S+ G +IL+DI+ + I T++GP+G+GKST+ KLI +I PT
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 64 ---------------IGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRD-DV 107
IG V + P L G T+++ + M + ++ DV
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEG------TVKDNIEYGPM------LKGEKNVDV 111
Query: 108 LQILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
L V L +Y R++K+LSGGE QR +A+ L P +L+LDEP +D +
Sbjct: 112 EYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201
ELI ++ ++ I+HN+ D LN
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN 206
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 92.5 bits (230), Expect = 8e-20
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 25/197 (12%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK----------RHPQL 73
L +++F + IV +GPNG+GKST K+ITG + P GSV+ + Q
Sbjct: 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75
Query: 74 IVGYVPQKVTIENTLPLSL-----MRFMT----LSMPSSRDDVLQILDRVNLIGKYNRNI 124
+GY+P+ N L L + ++F+ + + V ++++ V L + ++ I
Sbjct: 76 NIGYLPE----HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI 131
Query: 125 KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
LS G QR LA+AL+ P +L+LDEP G+D + + +I ++ + I+L +
Sbjct: 132 GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK--TIILST 189
Query: 185 HNLHMVMASTDTVICLN 201
H + V A D VI +N
Sbjct: 190 HIMQEVEAICDRVIIIN 206
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 91.5 bits (227), Expect = 2e-19
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68
I L S ++ D++FTI E L+GPNG+GKSTIA+++ G+I P G +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 69 --------RHPQLIVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV 114
R ++ +G VPQ + T+ L L R+ +S + +L+
Sbjct: 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENL-LVFGRYFGMSTREIEAVIPSLLEFA 123
Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
L K + + LSGG +R LA+AL+ P LL+LDEP G+D ++E + S+
Sbjct: 124 RLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL-L 182
Query: 175 STGCGILLISH 185
+ G ILL +H
Sbjct: 183 ARGKTILLTTH 193
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 89.8 bits (223), Expect = 6e-19
Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 18/201 (8%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV--- 82
L+ +N TI+ E ++LIG +G GKST+ LI+G+ +PT G V + I P ++
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 83 ---------TIENTLPLSLMRFM-TLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEF 132
T+ + L++ R + LS R V + + V L ++ LSGG
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 133 QRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMA 192
QR +A+AL +P +L+LDEP +D +L E + + + +L+++H++ +
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL 180
Query: 193 STDTVICLNNRICYQGPPQTI 213
+D V+ L N GP I
Sbjct: 181 LSDRVVMLTN-----GPAANI 196
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 89.7 bits (223), Expect = 6e-19
Identities = 59/238 (24%), Positives = 118/238 (49%), Gaps = 27/238 (11%)
Query: 8 TPLISLSNTSFHKNGYK--ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
+ +I + N SF + L++++F I E V ++G NGSGKSTI+K++TG++KP G
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64
Query: 66 SVK-----------RHPQLIVGYVPQK-------VTIENTLPLSL--MRFMTLSMPSSRD 105
+K + + +G + Q T+E+ + L + M D
Sbjct: 65 EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIID 124
Query: 106 DVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
D+ + +V + ++ ++LSGG+ QR +A L P +++ DE +D G+ +
Sbjct: 125 DLAK---KVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222
+++ +R++ ++ I+H++ + + D VI + ++ QG P+ I +N E +
Sbjct: 182 KKIMVDLRKTRKKTLISITHDMDEAILA-DKVIVFSEGKLIAQGKPKEILNNKEILEK 238
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 89.7 bits (223), Expect = 6e-19
Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 26/202 (12%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV---- 67
LS H+ +L +++ ++K E V L+G +G GKST+A+L+ G+ P+ G+V
Sbjct: 17 GLSGKHQHQ---TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG 73
Query: 68 --------------KRHPQLI----VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
+R Q++ + V + T+ + L ++L +
Sbjct: 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASE 133
Query: 110 ILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
+L V+L ++ LSGG+ QR LA+AL +P LL+LDE + +D + + L
Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 169 ITSVRQSTGCGILLISHNLHMV 190
+ ++Q G L I+H+L +V
Sbjct: 194 LKKLQQQFGTACLFITHDLRLV 215
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 89.2 bits (222), Expect = 8e-19
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 27/204 (13%)
Query: 10 LISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+I N S + G L D++ I+ E + L GP+G+GK+T+ KL+ G + P+ G V+
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 69 ---------RHPQLI-----VGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDD 106
R QL +G V P + EN LPL + +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRR 117
Query: 107 VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
V L +V L K + + LSGGE QR +A+A++ P LL+ DEP +D +
Sbjct: 118 VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177
Query: 167 ELITSVRQSTGCGILLISHNLHMV 190
+L+ + + G +++ +H+L +V
Sbjct: 178 DLLKRLNKR-GTTVIVATHDLSLV 200
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 89.1 bits (221), Expect = 8e-19
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 20/195 (10%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
I N ++ ++F ++ E L+GPNG+GK+T +++ G+ P GS+
Sbjct: 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 68 K----------RHPQLIVGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
RH + VG VPQ EN L R+ LS ++R V +
Sbjct: 65 SLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFG--RYFGLSAAAARALVPPL 122
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
L+ L K + + +LSGG +R LA+AL+ P++LVLDEP G+D ++E +
Sbjct: 123 LEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182
Query: 171 SVRQSTGCGILLISH 185
S+ + G ILL +H
Sbjct: 183 SL-LARGKTILLTTH 196
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 89.2 bits (222), Expect = 9e-19
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 35/213 (16%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------RHPQLIV--GY 77
++ ++ EI+ L+GPNG+GKST+ + G++ P GS++ +L Y
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 78 VPQKVTIENTLPLSLM---RFMTLSMPSSR-----DDVL-QILDRVNLIGKYNRNIKDLS 128
+ Q+ T P M +++TL P L ++ + + L K R++ LS
Sbjct: 74 LSQQQT-----PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLS 128
Query: 129 GGEFQRALLAKALLR-----KPN--LLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
GGE+QR LA +L+ P LL+LDEP+ +D + +L L++ + Q G ++
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVV 187
Query: 182 LISHNLHMVMASTDTVICLNNRICY-QGPPQTI 213
+ SH+L+ + D V L G +
Sbjct: 188 MSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 87.6 bits (217), Expect = 2e-18
Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-- 68
I L+ S ++ ++FT+ E L+GPNG+GKSTIA++I G+ P G +
Sbjct: 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVL 101
Query: 69 --------RHPQLIVGYVPQ--KVTIENTLPLSLM---RFMTLSMPSSRDDVLQILDRVN 115
R + +G VPQ + +E T+ +L+ R+ +S + +L+
Sbjct: 102 GVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 161
Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
L K + + DLSGG +R LA+AL+ P LL+LDEP G+D ++E + S+ +
Sbjct: 162 LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL-LA 220
Query: 176 TGCGILLISH 185
G ILL +H
Sbjct: 221 RGKTILLTTH 230
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 87.6 bits (217), Expect = 3e-18
Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------- 74
G ++++D++ T+ EIV L+GPNG+GK+T ++ GI+ G++ + I
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 75 -----VGYVPQKVTIENTLPL--SLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNRN 123
+GY+PQ+ +I L + +LM + LS D ++++ ++ +
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM 134
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
+ LSGGE +R +A+AL P ++LDEP G+D + + +I +R S G G+L+
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS-GLGVLIT 193
Query: 184 SHNLHMVMASTD-TVICLNNRICYQGPPQTIKDNAEYIRLF 223
HN+ +A + I + G P I + R++
Sbjct: 194 DHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 87.4 bits (217), Expect = 3e-18
Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 37/233 (15%)
Query: 9 PLISLSNTSFHKNGYK-----ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
+I + + SF Y L+D++F++ E V ++G NGSGKST+AKL+ G++ P
Sbjct: 4 EIIRVEHISFR---YPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60
Query: 64 IGSVKRHPQLI-----------VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRD 105
G++ ++ VG V Q T+++ + L + +P R+
Sbjct: 61 AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL---ENIGVP--RE 115
Query: 106 D----VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161
+ V Q L +V + NR LSGG+ QR +A L +P++++LDE +D G
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175
Query: 162 ELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
+ E + +++ G +L I+H+L A D VI +N I +G P+ I
Sbjct: 176 RREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 87.2 bits (217), Expect = 4e-18
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 33/221 (14%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
P++ L S +G+K L D++ + P E+ +IGPNG+GK+T+ +ITG +P GSV
Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60
Query: 69 -------RHP-----QLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSR----------- 104
P + +G QK T+ EN L++ + L++P +
Sbjct: 61 FGGTDLTGLPEHQIARAGIGRKFQKPTVFEN---LTVFENLELALPRDKSVFASLFFRLS 117
Query: 105 ----DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160
D + ++L+ + L + +R LS G+ Q + L++ P LL+LDEP+ G+
Sbjct: 118 AEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDE 177
Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN 201
EL+ S+ ++++ H++ V + D V L+
Sbjct: 178 ETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLH 216
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 86.8 bits (216), Expect = 5e-18
Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 39/240 (16%)
Query: 2 SNALSITPLISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI 59
S A + ++L+N SF +L+ ++ IK E V L+G G GKST+ +L+T
Sbjct: 330 STAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 389
Query: 60 IKPTIGSVKRHPQLIVGY-----------VPQKVTIENTLPLSLMRFMTLSMPSSRDDVL 108
P G + + Q I Y V Q+V + + +L + L+ P++ D+ L
Sbjct: 390 WDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA---TLRDNLLLAAPNASDEAL 446
Query: 109 -QILDRVNL-------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPL 154
++L +V L +G+ R LSGGE +R +A+ALL LL+LDEP
Sbjct: 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQ---LSGGEQRRLGIARALLHDAPLLLLDEPT 503
Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL--NNRICYQGPPQT 212
+G+D E + EL+ Q +L+I+H L + D IC+ N +I QG Q
Sbjct: 504 EGLDAETERQILELLAEHAQ--NKTVLMITHRLTG-LEQFDR-ICVMDNGQIIEQGTHQE 559
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 86.1 bits (213), Expect = 7e-18
Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 7/196 (3%)
Query: 9 PLISLSNTSFHKNGYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
P+IS S+ SF G +L +++NF I + + ++GPNG GKSTI KLI+G ++P+ G+V
Sbjct: 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI-LDRVNLIGKYN-RNIK 125
R ++ + Q L + + +M P + L+ L + G + +
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY 626
Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
LSGG+ R AK +KP++L+LDEP +D ++ LI + G G+L++SH
Sbjct: 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD---AVEALIQGLVLFQG-GVLMVSH 682
Query: 186 NLHMVMASTDTVICLN 201
+ H++ S D + ++
Sbjct: 683 DEHLISGSVDELWVVS 698
Score = 36.8 bits (85), Expect = 0.005
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
+ K SGG R LA+AL +P+LL+LDEP +D L L
Sbjct: 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWL 383
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 86.2 bits (214), Expect = 8e-18
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 52/212 (24%)
Query: 11 ISLSNTSFHKNGYKIL-----QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
+ L N +F GY L ++ + T++P + V L+G +GSGKSTIAKL+ G+ +P G
Sbjct: 478 VELRNITF---GYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 66 SV-------KRHPQLI----VGYVPQKV-----TIENTLPLSLMRFMTL---SMPSSRDD 106
+ + P+ + V V Q + T+ + L TL ++P + D
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL--------TLWDPTIPDA--D 584
Query: 107 VLQ------ILDRVN-LIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155
+++ I D + G Y+ + +LSGG+ QR +A+AL+R P++L+LDE
Sbjct: 585 LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATS 644
Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNL 187
+D E + + + R+ GC ++++H L
Sbjct: 645 ALDPETEKIIDDNL---RRR-GCTCIIVAHRL 672
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 85.9 bits (213), Expect = 8e-18
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 18/202 (8%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
TPL+ L+ S +L ++ I + V ++G +G GKST+ +L+ G+ P+ G
Sbjct: 11 TPLL-LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-- 67
Query: 68 KRHPQLIVGYVPQKVTIENT---------LPL-SLMRFMTLSMPSS-RDDVLQILDRVNL 116
+L+ G P E+T LP ++ + L + RD LQ L V L
Sbjct: 68 ----ELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGL 123
Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
+ N LSGG+ QR LA+AL+ +P LL+LDEPL +D + + +LI S+ Q
Sbjct: 124 ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH 183
Query: 177 GCGILLISHNLHMVMASTDTVI 198
G +LL++H++ +A D V+
Sbjct: 184 GFTVLLVTHDVSEAVAMADRVL 205
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 85.8 bits (213), Expect = 8e-18
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------RHPQLI 74
++L DIN I P EIV L GP+GSGK+T+ LI G+ GS+K +L+
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 75 -----VGYVPQKVTIENTLPLSLMRFMT--------------LSMPSSRDDVLQILDRVN 115
+GY+ Q +L+ F+T LS +R+ +L+ V
Sbjct: 79 QLRRNIGYIFQA--------HNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG 130
Query: 116 LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
L + +LSGG+ QR +A+AL+ +P L++ DEP +D + EL+ + +
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 176 TGCGILLISHN 186
GC IL+++H+
Sbjct: 191 QGCTILIVTHD 201
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 85.5 bits (212), Expect = 1e-17
Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 19/225 (8%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
P +S+ N + L+DI+ ++K E V L+GP+G GK+T+ ++I G+ + T G++
Sbjct: 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62
Query: 69 RHPQLIVGYVPQK---------------VTIENTLPLSLM-RFMTLSMPSSRDDVLQILD 112
+ + I PQK +T+ + + L R M + + R V ++LD
Sbjct: 63 QGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAER--VAELLD 120
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
V L G + LSGG+ QR LA+AL P LL+LDEPL +D L I +
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
++ G ++++H+ ++ D ++ +N+ I G PQ I +
Sbjct: 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 85.2 bits (211), Expect = 2e-17
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 26/187 (13%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-----------KRH-PQL 73
L ++NF I E+V L+G +G+GKST KLI GI KPT G + R P L
Sbjct: 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL 78
Query: 74 --IVGYVPQ-------KVTIENT-LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
+G V Q + +N PL R + + + + V L++V L GK +
Sbjct: 79 RRHIGMVFQDHRLLSDRTVYDNVAFPL---RIIGVPPRDANERVSAALEKVGLEGKAHAL 135
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
LSGGE QR +A+A++ KP LL+ DEP +D + L + G +L+
Sbjct: 136 PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVA 194
Query: 184 SHNLHMV 190
+H++++V
Sbjct: 195 THDINLV 201
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 84.7 bits (210), Expect = 2e-17
Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--- 67
I + T F K K L ++N I+ E V LIG GSGKST+ + + G++KPT G +
Sbjct: 11 IYMEGTPFEK---KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIID 67
Query: 68 -------KRHPQLI---VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
K I VG V Q + TIE + + + LS ++ +I
Sbjct: 68 GVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN-LGLS-----EE--EI 119
Query: 111 LDRV----NLIGKYNRNIKD-----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161
+RV N++G + KD LSGG+ +R +A + +P +L+LDEP G+D G
Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
Query: 162 ELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAE 218
+ I + + I+L+SH++ V D +I +N + QG P+ + E
Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 84.5 bits (210), Expect = 2e-17
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 40/213 (18%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74
IL+ ++ + E+ ++G NG GK+T+ K + G++ GS++ + I
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 75 --VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSR--DDVLQ---ILDRVNLIGKYN 121
+ YVPQ ++T+E L L L S + D++ + +L +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENL---LTGLAALPRRSRKIPDEIYELFPVLKEML-----G 126
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV----RQSTG 177
R DLSGG+ Q+ +A+AL+ +P LL+LDEP +GI P S+ + I V R G
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQ-P---SIIKDIGRVIRRLRAEGG 182
Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGP 209
ILL+ L D + R+ G
Sbjct: 183 MAILLVEQYLDFARELADRYYVMERGRVVASGA 215
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 84.3 bits (209), Expect = 2e-17
Identities = 51/191 (26%), Positives = 100/191 (52%), Gaps = 26/191 (13%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----- 74
K ++L+ ++ +I EIV ++G +GSGKST+ L+ G+ PT G V + Q +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS 74
Query: 75 ----------VGYV-------PQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
+G++ P +EN +PL + + S+ +++ ++L++V L
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK---SVKEAKERAYEMLEKVGL 131
Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
+ N +LSGGE QR +A+AL+ +P+L++ DEP +D +++L+ + +
Sbjct: 132 EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191
Query: 177 GCGILLISHNL 187
L+++H+L
Sbjct: 192 NTSFLVVTHDL 202
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 83.4 bits (207), Expect = 4e-17
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 54/192 (28%)
Query: 22 GYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80
G K+L D++F + P IV +IGPNG+GKST+ ++ITG +P G++K + + YV Q
Sbjct: 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ 392
Query: 81 KVTIENTLPLSLMRFMTLSMPSSRD----------------DVLQILDR-VN---LIGKY 120
SRD D++Q+ R V +G++
Sbjct: 393 ----------------------SRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRF 430
Query: 121 N-------RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173
N + + LSGGE R LAK L N+L+LDEP +D +L E +
Sbjct: 431 NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF- 489
Query: 174 QSTGCGILLISH 185
GC ++ISH
Sbjct: 490 --AGC-AVVISH 498
Score = 71.5 bits (176), Expect = 2e-13
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 40/170 (23%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVT 83
+IL+DI+ + P + ++G NG+GKST+ +++ G+ K G + P + VGY+PQ+
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78
Query: 84 IENTLPL-------------SLMRFMTLSM----PSSRDDVL--------QILDRVNLIG 118
++ T + +L RF +S P + D L +I+D +
Sbjct: 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWD 138
Query: 119 KYNR---------------NIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
+ ++ LSGGE +R L + LL KP++L+LDEP
Sbjct: 139 LDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 83.3 bits (206), Expect = 5e-17
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 23/225 (10%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I ++N S ++ L D+N + +V L+GP+GSGKST+ ++I G+ +P G ++ +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 71 PQLI---------VGYVPQK------VTIENTLPLSLMRFMTLSMPSS---RDDVLQILD 112
Q +G+V Q +T+ + + L + + V ++L+
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGL----EIRKHPKAKIKARVEELLE 116
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
V L G +R LSGG+ QR LA+AL +P +L+LDEP +D L + +
Sbjct: 117 LVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN 216
+ ++H+ M D ++ ++N +I G P + D+
Sbjct: 177 HDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 82.5 bits (204), Expect = 9e-17
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 20/214 (9%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK---------- 68
+ + L +INF N + +IGPNG+GKST+ + GI+KPT GSV
Sbjct: 13 YSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN 72
Query: 69 -RHPQLIVGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
R + VG V Q T+E + + + L + V L + L
Sbjct: 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELR 131
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
+R LSGGE +R +A + +P +LVLDEP G+D G L + + + ++ G +
Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191
Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
+ +H L +V D + ++ RI G + I
Sbjct: 192 IFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 82.5 bits (204), Expect = 1e-16
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 37/221 (16%)
Query: 10 LISLSNTSFHKNG---YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
+I + N +F L D++F +K E +++IG NGSGKST +LI G+++ G
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSR-------DDVL----------- 108
+ +I G +T EN + M P ++ DDV
Sbjct: 64 I-----IIDG---DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHE 115
Query: 109 QILDRVN----LIGKYN---RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161
++ +RVN L+G + R LSGG+ QR +A A+ +P +++LDE +D G
Sbjct: 116 EMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175
Query: 162 ELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
L L + I +R ++ I+H+L V A +D V+ + N
Sbjct: 176 RLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKN 215
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 81.6 bits (202), Expect = 1e-16
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 38/227 (16%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP----TIGSVK---------RHPQL 73
QD+N ++K E++ L+G +GSGKS I G++ P T G +
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 74 IVGYVPQK--------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIK 125
+ + Q T+ N +L LS +R +L+ L+ V L + +
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLS-KQARALILEALEAVGL-----PDPE 116
Query: 126 --------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
LSGG QR ++A ALL +P L+ DEP +D + + +L+ +RQ G
Sbjct: 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFG 176
Query: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDN--AEYIR 221
GILLI+H+L +V D V +++ RI +G + I N E R
Sbjct: 177 TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 81.5 bits (202), Expect = 2e-16
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 61/204 (29%)
Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72
+ N ++ +G ++++D + ++ + + LIGPNG GK+T+ KL+ G ++ G + +
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTK 381
Query: 73 LIVGYV--------PQKVTIENT----------------------LPLSLMRFMTLSMPS 102
L V Y P+K ++N R MT P
Sbjct: 382 LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMT---P- 437
Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG- 161
+K LSGGE R LLA+ L+ NLL+LDEP +D
Sbjct: 438 ---------------------VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476
Query: 162 ELSLYELITSVRQSTGCGILLISH 185
EL L EL+ S Q T +LL+SH
Sbjct: 477 EL-LEELLDSY-QGT---VLLVSH 495
Score = 48.8 bits (117), Expect = 1e-06
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58
LIS+ + +L + I+ NE V L+G NG+GKST+ K++ G
Sbjct: 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51
Score = 39.2 bits (92), Expect = 9e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
LSGG ++A L +AL+ P++L+LDEP +D L + + + S I+ ISH
Sbjct: 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGS----IIFISH 211
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 81.7 bits (202), Expect = 2e-16
Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 26/243 (10%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------ 74
+G + L+ INF + E+V L+GPNG+GKST+ GI+KPT G V + I
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS 72
Query: 75 -------VGYVPQKV-------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
VG V Q T+E + + + LS V + L V + G
Sbjct: 73 LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN-LGLSKEEVEKRVKEALKAVGMEGFE 131
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
N+ LSGG+ +R +A L KP ++VLDEP G+D G + +L+ + + G I
Sbjct: 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITI 190
Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR---LFGTRATEILAIHNH 236
++ +H++ +V D V +++ +I +G P+ + + E IR L R ++ I N
Sbjct: 191 IISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLPRVAHLIEILNK 250
Query: 237 KHD 239
+ +
Sbjct: 251 EDN 253
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 81.3 bits (201), Expect = 2e-16
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 26/212 (12%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74
L D+N TI+ IG GSGKSTI +L+ G+ PT GSV+ LI
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 75 ----VGYV---PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQI-LDRVNLIG----KYNR 122
VG V P+ E T+ L + F + S+++ + +++ L+G + +
Sbjct: 83 IRKKVGLVFQFPESQLFEETV-LKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK 141
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
N +LSGG+ +R +A L +P +LVLDEP G+D G L L + QS G I+L
Sbjct: 142 NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVL 200
Query: 183 ISHNLHMVMASTDTVICLN-NRICYQGPPQTI 213
++H + V D V L ++ G P+ I
Sbjct: 201 VTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 80.9 bits (200), Expect = 3e-16
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 34/174 (19%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I ++N ++L DI+ I ++V L+GP+GSGK+T+ ++I G+ T G ++ H
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 71 PQLI---------VGYVPQKVTIENTLPLSLMRFMT--------LSM------PSS---R 104
+ VG+V Q +L R MT L++ P++ +
Sbjct: 63 GTDVSRLHARDRKVGFVFQH--------YALFRHMTVFDNIAFGLTVLPRRERPNAAAIK 114
Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
V Q+L+ V L +R LSGG+ QR LA+AL +P +L+LDEP +D
Sbjct: 115 AKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 79.6 bits (197), Expect = 6e-16
Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
+ +++N ++ E + +IG NG GK+T+ + + G ++P G+VK +GY Q
Sbjct: 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAY 393
Query: 85 ENTLPLSLMRFMTLSMPSSRDD--VLQILDRVNLIGK--YNRNIKDLSGGEFQRALLAKA 140
+ L+L +M+ D+ V L R+ L + +++K LSGGE R L K
Sbjct: 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL-LFSQDDIKKSVKVLSGGEKGRMLFGKL 452
Query: 141 LLRKPNLLVLDEP 153
+++KPN+LV+DEP
Sbjct: 453 MMQKPNVLVMDEP 465
Score = 40.6 bits (96), Expect = 4e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 41 LIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80
LIG NG GKST K++ G ++P+ G+V P +G + Q
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71
Score = 36.8 bits (86), Expect = 0.005
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLH---MV 190
R LLA+AL P++L+LDEP +D + E + + R ST +++ISH+ H V
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDI-NTIRWLEDVLNERNST---MIIISHDRHFLNSV 218
Query: 191 ---MASTD 195
MA D
Sbjct: 219 CTHMADLD 226
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 79.6 bits (197), Expect = 7e-16
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 25/204 (12%)
Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK-------- 81
+ T++ E V ++GP+G+GKST+ LI G + P GS+ + Q P +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 82 -------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134
+T+ + L L + L+ + R+ + I ++ + R LSGG+ QR
Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLN-AAQREKLHAIARQMGIEDLLARLPGQLSGGQRQR 137
Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPG----ELSLYELITSVRQSTGCGILLISHNLHMV 190
LA+ L+R+ +L+LDEP +D P L+L + RQ T +L++SH+L
Sbjct: 138 VALARCLVREQPILLLDEPFSALD-PALRQEMLTLVSQVCQERQLT---LLMVSHSLEDA 193
Query: 191 MA-STDTVICLNNRICYQGPPQTI 213
+ +++ + RI + GP +
Sbjct: 194 ARIAPRSLVVADGRIAWDGPTDEL 217
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 79.5 bits (196), Expect = 8e-16
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 22/233 (9%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---- 74
+ +G L+ IN IK E+ ++G NG+GKST+ + + GI+KP+ G + + I
Sbjct: 15 YSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR 74
Query: 75 ---------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIG 118
VG V Q ++ + + + L R V L R +
Sbjct: 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN-LKLPEDEVRKRVDNALKRTGIEH 133
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
++ LS G+ +R +A L+ +P +LVLDEP G+D G + +L+ +++ G
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFGTRATEI 230
I++ +H++ +V D V + R+ QG P+ + E +R R I
Sbjct: 194 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPRI 246
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 79.1 bits (195), Expect = 8e-16
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 25/226 (11%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------- 74
G K + D + I EI ++G +GSGKST +++ +I+PT G + + I
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 75 --------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
+G V Q+ TI L + ++ L++L V L
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLG-PELLGWPEQERKEKALELLKLVGLEEYE 123
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
+R +LSGG QR LA+AL +P++L++DE +D S+ + + ++ + I
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA--EYIRLF 223
+ I+H+L + D ++ + I G P I N EY+ F
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 79.0 bits (195), Expect = 1e-15
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------ 74
G ++L+ +NF + E++ L+G NG+GKST+ + G+++P G+V + +
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62
Query: 75 -------VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
VG V Q ++ + + + LS V + L V G
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLN-LGLSEAEVERRVREALTAVGASGLR 121
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
R LSGGE +R +A A+ +P++L+LDEP G+D G + ++ +R G +
Sbjct: 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTV 180
Query: 181 LLISHN 186
++ +H+
Sbjct: 181 VISTHD 186
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 78.7 bits (194), Expect = 1e-15
Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 37/234 (15%)
Query: 16 TSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV 75
T K G L +I+F ++ V L+G GSGKST+ + ++KP+ G++ I
Sbjct: 16 TPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT-----IA 67
Query: 76 GY-----------------------VPQKVTIENTLPLSLM---RFMTLSMPSSRDDVLQ 109
GY P+ ENT+ + + S +++ L+
Sbjct: 68 GYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALK 127
Query: 110 ILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
L +V L +++ +LSGG+ +R +A + +P +L LDEP G+D G + +L
Sbjct: 128 WLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL 187
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
Q G ++L++HN+ V D V+ L + ++ P+ I + E+++
Sbjct: 188 FKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKEWLK 240
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 78.1 bits (193), Expect = 2e-15
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 36/238 (15%)
Query: 15 NTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
T F + L D+N +I V +IG GSGKST+ + + G+++PT G+V ++I
Sbjct: 15 KTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI 71
Query: 75 ---------------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPSSRDDVLQ--- 109
VG V Q + T+E + M F S +D Q
Sbjct: 72 TAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGV-----SEEDAKQKAR 126
Query: 110 -ILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
+++ V L + R+ +LSGG+ +R +A L +P +LVLDEP G+D G + E
Sbjct: 127 EMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224
+ + + G +L++H++ D ++ ++ + QG P+ I + + + G
Sbjct: 187 MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIG 244
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 77.9 bits (192), Expect = 2e-15
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 41 LIGPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQL-IVGYVPQK------VTIE 85
L+GP+G GK+T+ +L+ G +P GS+ P L + V Q +T+E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 86 NTLPLSL-MRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRK 144
+ L MR + + R VL+ L V L +R LSGG+ QR LA+AL+ K
Sbjct: 61 ENVAFGLKMRKVPRAEIKPR--VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFK 118
Query: 145 PNLLVLDEPLQGIDFP-GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN- 202
P +L+LDEPL +D + EL T Q G + ++H+ M +D + +
Sbjct: 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQ-LGITFVFVTHDQEEAMTMSDRIAIMRKG 177
Query: 203 RICYQGPPQTI 213
+I G P+ I
Sbjct: 178 KIAQIGTPEEI 188
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 77.8 bits (192), Expect = 2e-15
Identities = 68/236 (28%), Positives = 112/236 (47%), Gaps = 41/236 (17%)
Query: 8 TPLISLSNTS--FHKNG--YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--K 61
PL+++ N S F + ++ D++ I+ E + L+G +GSGKS A I ++
Sbjct: 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 62 PTI---GSVKRHPQLIVGYVPQKV-----------------------TIENTLP--LSLM 93
P + G ++ H + ++ Q + T+E L LSL
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH 122
Query: 94 RFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLV 149
R M ++R ++L LDRV I + + + D LSGGE QR ++A ALL +P LL+
Sbjct: 123 RGM--RREAARGEILNCLDRVG-IRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179
Query: 150 LDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRIC 205
DEP +D + + +L+ ++Q G+L I+HNL +V D V + N C
Sbjct: 180 ADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235
Score = 64.0 bits (156), Expect = 3e-11
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 36/219 (16%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
++++I+FT++P E + L+G +GSGKST + +I + G + Q + +++
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQL-- 357
Query: 85 ENTLPLSLMRFMTLSMPSS----RDDVLQILD---RV-----NLIGKYNRNIK------- 125
LP+ + P+S R +VLQI++ RV + + + I
Sbjct: 358 ---LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL 414
Query: 126 ----------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
+ SGG+ QR +A+AL+ KP+L++LDEP +D + + L+ S++Q
Sbjct: 415 DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
Query: 176 TGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTI 213
L ISH+LH+V A VI L + QG + +
Sbjct: 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 77.9 bits (193), Expect = 2e-15
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 50/160 (31%)
Query: 22 GYKIL-QDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ 80
G ++L D++F++ P IV +IGPNG+GKST+ K+ITG +P G++K + + YV Q
Sbjct: 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQ 394
Query: 81 KVTIENTLPLSLMRFMTLSMPSSRD----------------DVLQILDR-VN---LIGKY 120
SRD D++++ +R + +G++
Sbjct: 395 ----------------------SRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF 432
Query: 121 N-------RNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
N + + LSGGE R LAK L + N+L+LDEP
Sbjct: 433 NFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472
Score = 51.3 bits (124), Expect = 2e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY 77
+IL+DI+ + P + ++G NG+GKST+ +++ G+ K G + P + VGY
Sbjct: 15 VVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGY 74
Query: 78 VPQ 80
+PQ
Sbjct: 75 LPQ 77
Score = 44.3 bits (106), Expect = 3e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
+ LSGGE +R L + LL KP++L+LDEP
Sbjct: 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 77.1 bits (190), Expect = 3e-15
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 29/227 (12%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
+L N SF G +L ++ T ++ LIG NGSGKST+ K++ P+ G +
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 72 QLI-----------VGYVPQKV------TIENTLPL-------SLMRFMTLSMPSSRDDV 107
Q + V Y+PQ++ T+ + + +L RF + R+ V
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGA----ADREKV 128
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
+ + V L +R + LSGGE QRA +A + + L+LDEP +D ++ +
Sbjct: 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
L+ + Q G ++ + H+++M D ++ L + QG P +
Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 77.3 bits (191), Expect = 4e-15
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 22/162 (13%)
Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72
L N S IL D+N TI+ ++ +IG +GSGKST+ +I + K G V + +
Sbjct: 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60
Query: 73 LI---------------VGYVPQKV------TIENTLPLSLMRFMTLSMPSSRDDVLQIL 111
+GY+ Q T+E L L L ++ LS R+ + L
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL-KYKKLSKKEKREKKKEAL 119
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
++V L K + I +LSGGE QR LA+A+L+ P L++ DEP
Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP 161
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 77.1 bits (190), Expect = 4e-15
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 21/228 (9%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-- 67
L+ + SF + I +I+ T+ +I ++GP+G GK+T+ +LI G I P G +
Sbjct: 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66
Query: 68 -----------------KRHPQLI-VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
KR L G + + + + + L L P V+
Sbjct: 67 DGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMM 126
Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
L+ V L G +LSGG +RA LA+A+ +P+L++ DEP G D L +LI
Sbjct: 127 KLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186
Query: 170 TSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTIKDN 216
+ + + G +++SH++ V++ D I + +I G Q ++ N
Sbjct: 187 SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 76.2 bits (188), Expect = 7e-15
Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 41/230 (17%)
Query: 11 ISLSNTSF--HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
I + +F +G IL D++ I+P E V ++GP+GSGKST+ +L+ G P GSV
Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511
Query: 69 RHPQ----LIVGYVPQK--VTIENT--LPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY 120
Q L V V ++ V ++N + S+ + P + D+ + L
Sbjct: 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGL---- 567
Query: 121 NRNIKD---------------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
+I+ LSGG+ QR L+A+AL+RKP +L+ DE +D
Sbjct: 568 AEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD------- 620
Query: 166 YELITSVRQSTG---CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQ 211
V +S ++I+H L + + D + L+ R+ QG
Sbjct: 621 NRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYD 669
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 75.5 bits (186), Expect = 1e-14
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
+PL+ L N + KIL +I+F+++ E + GP+G GKST+ K++ +I PT G++
Sbjct: 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 68 KRHPQLIVGYVP----QKV------------TIENTLPLS-LMRFMTLSMPSSRDDVLQI 110
+ I P Q+V T+ + L +R DD
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDD---- 120
Query: 111 LDRVNLIGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
L+R L +NI +LSGGE QR L + L P +L+LDE +D + ++ E+I
Sbjct: 121 LERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180
Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICL 200
+ +L ++H+ + D VI L
Sbjct: 181 HRYVREQNIAVLWVTHDKDEI-NHADKVITL 210
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 75.6 bits (186), Expect = 1e-14
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 26/223 (11%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP--------TIGSVKRHPQLI-- 74
L DI+F+I LIG NGSGKSTI+KLI G++ P T+ + + +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 75 ----VGYVPQK-------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
VG V Q T+ + + L + P V +L V ++ +
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDSE 140
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
+LSGG+ QR +A L +P +++LDE +D G+ + +LI +++ ++ I
Sbjct: 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI 200
Query: 184 SHNL-HMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224
+H++ MA D V+ L++ ++ QG P I E ++ G
Sbjct: 201 THDIDEANMA--DQVLVLDDGKLLAQGSPVEIFSKVEMLKEIG 241
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 75.1 bits (184), Expect = 1e-14
Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 31/218 (14%)
Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK----- 61
+ P I ++N SF+ + KIL+ ++ I +++ +IGP+G GKST K + + +
Sbjct: 4 LIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 62 PTIGSVKRHPQLI------VGYVPQKVTI----ENTLPLSL-------MRFMTLSMPSSR 104
G V+ Q I + + ++V++ N P+S+ ++ +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 105 DDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
DD+++ + D + K +++ DLSGG+ QR +A+AL KP +L++DEP G+
Sbjct: 124 DDIVESALKDADLWDEIK--HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGL 181
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
D + + LI S+R + ++++SHNLH V +D
Sbjct: 182 DPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 75.1 bits (185), Expect = 1e-14
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 31/238 (13%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG---- 65
+I N S H ++L +I+ I E+V +IGP+GSGKST+ + I + + T G
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 66 ---SVK------RHPQLIVGYV-------PQKVTIENTL--PLSLMRFMTLSMPSSRDDV 107
V R + G V P +EN + PL R S +
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPL---RVRGASKEEAEKQA 117
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
++L +V L + + +LSGG+ QR +A+AL KP L++ DEP +D P EL +E
Sbjct: 118 RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD-P-ELR-HE 174
Query: 168 LITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222
++ ++ G +++++H + +I ++ RI G PQ + N RL
Sbjct: 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRL 232
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 74.7 bits (184), Expect = 2e-14
Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 22 GY---KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY- 77
GY +IL D++ ++ +I LIGPNG GKST+ K ++ P G+V + I
Sbjct: 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLS 70
Query: 78 ----------------VPQKVTIENTLPLSLMRFMTLSMPSSRDD---VLQILDRVNLIG 118
P+ +T+ + +++L S +D V Q +++ +
Sbjct: 71 SRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH 130
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
+R + DLSGG+ QRA LA L + +++LDEP +D ++ L L+ + G
Sbjct: 131 LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GK 189
Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
++ + H+L+ D ++ L N + QG P+ +
Sbjct: 190 TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 74.5 bits (183), Expect = 2e-14
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
++TPL+ + N + +G + D++ TI EI L+G +G GKST+ +++ G +PT G
Sbjct: 15 ALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74
Query: 66 SVKRHPQLIVGYVPQK---------------VTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
+ + P + +T+E + L + L V ++
Sbjct: 75 QIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQ-DKLPKAEIASRVNEM 133
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
L V++ R LSGG+ QR LA++L ++P LL+LDEP+ +D
Sbjct: 134 LGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 74.4 bits (183), Expect = 3e-14
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 25/218 (11%)
Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
TP IS++ L+ +N T+ P EI L+G NG+GKST+ K+++GI +PT G+
Sbjct: 2 ATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGT 61
Query: 67 V------------KRHPQLIVGYVPQKVTIENTLP----LSLMRFMT--------LSMPS 102
+ K QL +G + Q++++ + L L + R +T +
Sbjct: 62 ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121
Query: 103 SRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
R +L RV L + + +LS Q +AK L+ ++++DEP +
Sbjct: 122 MRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEV 181
Query: 163 LSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
L+ ++ +R G I+ ISH L + D +
Sbjct: 182 DYLFLIMNQLR-KEGTAIVYISHKLAEIRRICDRYTVM 218
Score = 55.2 bits (133), Expect = 2e-08
Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--------- 74
K ++DI+F++ EI+ G GSG++ + + G+ K G ++ + + I
Sbjct: 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAV 336
Query: 75 ---VGYVP---------------QKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
+ Y+ Q + I +L + + + D+ ++ L
Sbjct: 337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYK-GAMGLFHEVDEQRTAENQREL 395
Query: 117 IG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
+ N+NI +LSGG Q+ L++K L P +++ DEP +GID + +Y+++ +
Sbjct: 396 LALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455
Query: 173 RQSTGCGILLISHNLHMVMASTDTVI 198
G IL++S L ++ D +
Sbjct: 456 ADD-GKVILMVSSELPEIITVCDRIA 480
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 74.3 bits (183), Expect = 3e-14
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 37/182 (20%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP----- 62
P I L+N N IL ++++ + P E ++GPNG+GKST+ LITG P
Sbjct: 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGYSN 316
Query: 63 -------------TIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS---------- 99
TI +K+H +GYV + ++ + S+ R + LS
Sbjct: 317 DLTLFGRRRGSGETIWDIKKH----IGYVSSSLHLDYRVSTSV-RNVILSGFFDSIGIYQ 371
Query: 100 MPSSRDDVL--QILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
S R L Q LD + + + + LS G+ + AL+ +AL++ P LL+LDEPLQG
Sbjct: 372 AVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431
Query: 157 ID 158
+D
Sbjct: 432 LD 433
Score = 54.6 bits (132), Expect = 2e-08
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 37/201 (18%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+ +S +F + K LQ + T+ + +G NGSGKS +A+ + G + G +
Sbjct: 2 SSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61
Query: 69 ---RHPQLIVGYVPQKVTIE-----NTLPLSLMRFMTLSMPSSRDD----VLQIL----- 111
H + QK+ + NT LS DD +I+
Sbjct: 62 SQFSHITRLSFEQLQKLVSDEWQRNNTDMLS----------PGEDDTGRTTAEIIQDEVK 111
Query: 112 --DRVNLIGKY-------NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGE 162
R + + +R K LS GE ++ LL +AL+ +P+LL+LDEP G+D
Sbjct: 112 DPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171
Query: 163 LSLYELITSVRQSTGCGILLI 183
L EL+ S+ QS G ++L+
Sbjct: 172 QQLAELLASLHQS-GITLVLV 191
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 73.9 bits (182), Expect = 3e-14
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 24/208 (11%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
PL+ + S +G ++L+ I+FT+ E+ L+G NG+GKST+ K+I GI+ P G++
Sbjct: 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 68 KRH--------P----QLIVGYVPQKVTIENTLP-LSLMRFMTLSMPSSRDD---VLQIL 111
+ P QL + VPQ+ + P LS+ + +P + + Q+L
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLL---FPNLSVKENILFGLPKRQASMQKMKQLL 125
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
+ + + L + Q + + L+R +L+LDEP + P E L +
Sbjct: 126 AALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLT-PAETE--RLFSR 182
Query: 172 VR--QSTGCGILLISHNLHMVMASTDTV 197
+R + G GI+ ISH L + D +
Sbjct: 183 IRELLAQGVGIVFISHKLPEIRQLADRI 210
Score = 65.5 bits (160), Expect = 1e-11
Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 43/203 (21%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENT 87
+I+ ++ EI+ L G G+G++ +A+ + G+ G + + + I +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST-AQRLARG 339
Query: 88 L----------------PLS------LMRFMTLSMPSSRDDVLQILDRVNLIGKYNR--N 123
L PL+ + +R++ +L+R Y R N
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN--AVLER------YRRALN 391
Query: 124 IK---------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
IK LSGG Q+ L+AK L P LL++DEP +G+D +Y+LI S+
Sbjct: 392 IKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451
Query: 175 STGCGILLISHNLHMVMASTDTV 197
+L IS +L + D V
Sbjct: 452 Q-NVAVLFISSDLEEIEQMADRV 473
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 73.7 bits (181), Expect = 4e-14
Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 33/238 (13%)
Query: 9 PLISLSNTSFH-----KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
P+I + N S + K + +++ +K EI ++G +G+GK+T++K+I G+++PT
Sbjct: 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT 337
Query: 64 IGSV------------KRHPQL------IVGYVPQKVTI--ENTLPLSLMRFMTLSMPS- 102
G V K P +G + Q+ + T+ +L + L +P
Sbjct: 338 SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397
Query: 103 -SRDDVLQILDRVNLIGKYNRNIKD-----LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
+R + L V + I D LS GE R LA+ L+++P +++LDEP
Sbjct: 398 LARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGT 457
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTI 213
+D ++ + I R+ +++SH++ V+ D + + +I G P+ I
Sbjct: 458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515
Score = 59.8 bits (145), Expect = 6e-10
Identities = 65/256 (25%), Positives = 113/256 (44%), Gaps = 53/256 (20%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPTIGSVK 68
I + N + +G ++L++I+FTI+ E++ ++G +G+GKS + ++ G+ +PT G +
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 69 RHPQLI--VGYV--PQKV-----TIENTLPLSLMRFMTLSMPSSR--------------- 104
H L GYV P KV TL + F LS R
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 105 --------DDVLQ------------------ILDRVNLIGKYNRNIKDLSGGEFQRALLA 138
D+VL+ +++ V L + +DLSGGE QR +LA
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180
Query: 139 KALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
+ L ++P L + DEP +D ++ + +++G ++L SH ++ +D I
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
Query: 199 CLNN-RICYQGPPQTI 213
L N I +G P +
Sbjct: 241 WLENGEIKEEGTPDEV 256
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 73.7 bits (181), Expect = 4e-14
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 30 NFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK-------- 81
+ + EIV ++GP+G+GKST+ LI G I+P GS+K + Q G P +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 82 -------VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQR 134
+T+ + L L + L+ ++ V+ +V + +R + LSGG+ QR
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLN-AEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136
Query: 135 ALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMAST 194
LA+ L+R +L+LDEP +D + L+ + +L+++H+L A
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIA 196
Query: 195 DTVICLNN-RICYQG 208
+ ++ +I
Sbjct: 197 SQIAVVSQGKIKVVS 211
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 73.3 bits (180), Expect = 5e-14
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 28/189 (14%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------------- 67
+L +++F+I E++ ++G +GSGKST+ L+ G+ PT G V
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 68 KRHPQLIVGY-----VPQKVTIEN-TLPLSLMRFMTLSMPS-SRDDVLQILDRVNLIGKY 120
R+ +L Y +P +EN +PL + P+ L++L V L +
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPL----LIGKKKPAEINSRALEMLAAVGLEHRA 139
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
N +LSGGE QR +A+AL+ P L++ DEP +D S+++L+ + + G
Sbjct: 140 NHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAF 199
Query: 181 LLISHNLHM 189
L+++H+L +
Sbjct: 200 LVVTHDLQL 208
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 73.4 bits (180), Expect = 5e-14
Identities = 58/203 (28%), Positives = 105/203 (51%), Gaps = 26/203 (12%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-------SVKRHPQLI 74
G + LQ + F ++P E+ L G +G+GKST+ KLI GI +P+ G + R
Sbjct: 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73
Query: 75 VGYVPQKVTI---ENTLPLSLMRFMTLSMP-----SSRDD----VLQILDRVNLIGKYNR 122
V ++ +++ + ++ L + + +++P +S DD V LD+V L+ K
Sbjct: 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID---FPGELSLYELITSVRQSTGCG 179
LSGGE QR +A+A++ KP +L+ DEP +D G L L+E V G
Sbjct: 134 FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV----GVT 189
Query: 180 ILLISHNLHMVMASTDTVICLNN 202
+L+ +H++ ++ + ++ L++
Sbjct: 190 VLMATHDIGLISRRSYRMLTLSD 212
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 73.2 bits (179), Expect = 5e-14
Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------------- 68
+ L DI+ +K LIG GSGKST+ + + G+++PT G V
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79
Query: 69 ---RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQIL-DRVNLIGK----Y 120
R +V P+ E T+ L + F + ++ +I +++ ++G +
Sbjct: 80 KPVRKKVGVVFQFPESQLFEETV-LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW 138
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
++ +LSGG+ +R +A L +P +LVLDEP G+D + + +L S+ Q +G +
Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTV 197
Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
+L++H + V D V L I G P + ++++
Sbjct: 198 VLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLK 239
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 73.2 bits (180), Expect = 5e-14
Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 27/225 (12%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI------- 74
G IL DI+ TIK N T++G +GSGKST+AKL+ G + G + + +
Sbjct: 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT 545
Query: 75 ----VGYVPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVLQILDRV-NLIGKYNRNI 124
+ Y+PQ+ +I L L ++ + ++ +I D + N+ Y +
Sbjct: 546 LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 125 KD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
+ +SGG+ QR LA+ALL +L+LDE +D E + + +++ T I
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKT---I 662
Query: 181 LLISHNLHMVMASTDTVICLNN-RICYQGP-PQTIKDNAEYIRLF 223
+ ++H L V +D +I L++ +I QG + + N Y L
Sbjct: 663 IFVAHRLS-VAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLI 706
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 72.9 bits (179), Expect = 6e-14
Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 39/238 (16%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT-------GIIK-- 61
+ S+ + +L +NF++ E V LIGP+GSGKSTI +++ G I+
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 62 ------------PTIGSVKRHPQLI---VGYV-------PQKVTIENTLPLSLMRFMTLS 99
P + + ++H + + +G V P K ++N + + + + ++
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDN-VTEAPVLVLGMA 119
Query: 100 MPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+ +++LD V L K + LSGG+ QR +A+AL +P +++ DE +D
Sbjct: 120 RAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD- 178
Query: 160 PGELSLYELITSVRQ---STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTI 213
EL + E++ +R+ +LL++H + D V + RI QG P I
Sbjct: 179 -PEL-VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 73.1 bits (180), Expect = 7e-14
Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVP---- 79
K L ++FT++ + + ++G +G GKST+A+L+T I PT G + Q ++ P
Sbjct: 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQK 88
Query: 80 ---QKV---------------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK-Y 120
QK+ + L L+ +LS R+ L ++ +V L + Y
Sbjct: 89 LLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY 148
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
+R SGG+ QR +A+AL+ P+++V DEP+ +D + + L+ ++Q G
Sbjct: 149 DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSY 208
Query: 181 LLISHNLHMVMASTDTVICLN-NRICYQGPPQTI 213
+ ISH+L +V D V+ + R +G + I
Sbjct: 209 VFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 72.7 bits (178), Expect = 8e-14
Identities = 57/247 (23%), Positives = 114/247 (46%), Gaps = 43/247 (17%)
Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK--PTIGS---- 66
L+ T F+++ + L ++ I E+V L+GP+GSGKST+ + ++G+I + GS
Sbjct: 10 LAKT-FNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL 66
Query: 67 ----VKRHPQLI---------VGYVPQKVTIENTLPL----------------SLMRFMT 97
V+R +L GY+ Q+ + N L + + + T
Sbjct: 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFT 126
Query: 98 LSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
+ LQ L RV ++ ++ + LSGG+ QR +A+AL+++ +++ DEP+ +
Sbjct: 127 ---REQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDN 216
D + + + + Q+ G +++ H + + + ++ L + Y G Q DN
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF-DN 242
Query: 217 AEYIRLF 223
+ L+
Sbjct: 243 ERFDHLY 249
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 72.4 bits (178), Expect = 1e-13
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------KR 69
+ + + ++FT+ E + + GPNG GK+T+ +++ G+++P G V +
Sbjct: 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRD 69
Query: 70 HPQLIVGYVPQKVTIENTL-PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLS 128
P + Y+ ++ L L + F ++ + L V L G + LS
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLS 129
Query: 129 GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
G+ +R LA+ L + L +LDEP +D G L L+ + G +LL +H
Sbjct: 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTH 185
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 72.4 bits (178), Expect = 1e-13
Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 42/244 (17%)
Query: 11 ISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
I +F + L +N T++P E V L+GP+G+GKST+ +L+ P G +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 68 --------KRHPQLI---VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV-- 114
+ P + + VPQ + + +R+ P + D+ ++ R
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRY---GRPDATDEEVEAAARAAH 454
Query: 115 --NLIGKYNRNI--------KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
I LSGG+ QR +A+A+L+ +L+LDE +D E
Sbjct: 455 AHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-- 512
Query: 165 LYELITSVRQ-----STGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQT-IKDNAE 218
V+Q G L+I+H L V+ + V+ RI QG I
Sbjct: 513 -----QLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGL 567
Query: 219 YIRL 222
Y RL
Sbjct: 568 YARL 571
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 72.0 bits (177), Expect = 1e-13
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG----- 65
I L+ + ++ L DI E + L+GP+G+GKS++ +++ + P G
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 66 ------SVKRHPQLI------VGYVPQK------VTIENTLPLSLMRFMTLSMPSSRDDV 107
S + I VG V Q+ +T++ L + R + LS +
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARA 122
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
++L+R+ L +R LSGG+ QR +A+AL+ +P +L+ DEP +D
Sbjct: 123 EKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 72.2 bits (177), Expect = 1e-13
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Query: 10 LISLSNTS--FHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
+I LSN + FH+ I L +++ + +I +IG +G+GKST+ + + + +PT G
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60
Query: 66 SV------------------KRHPQLIVGY---VPQKVTIEN-TLPLSLMRFMTLSMPSS 103
SV +R +I + + + N LPL L
Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEI 117
Query: 104 RDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
+ V ++L V L K++ +LSGG+ QR +A+AL P +L+ DE +D
Sbjct: 118 KRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
S+ EL+ + + G ILLI+H + +V D V ++N
Sbjct: 178 SILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN 216
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 72.1 bits (177), Expect = 1e-13
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 45/236 (19%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------------ 68
+G +L I+ +KP E+V +IGP+GSGK+T+ + I + +P G+++
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73
Query: 69 -------RHPQLIVGYV-------PQKVTIENTL--PLSLMRFMTLSMPSSRDDVL---- 108
R + VG+V P + +EN + P+ + +++
Sbjct: 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKG-------EPKEEATARAR 126
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
++L +V L GK + LSGG+ QR +A+AL +P +++ DEP +D P EL + E+
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD-P-EL-VGEV 183
Query: 169 ITSVRQ--STGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
+ ++RQ +++++H + D I ++ RI QGP + + + + R
Sbjct: 184 LNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPR 239
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 71.8 bits (177), Expect = 2e-13
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 18/164 (10%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
++ N + ++ + ++FT+ E+V + GPNG+GK+++ +++ G+ +P G V
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
Query: 70 HPQLI-------------VGYVPQKVTIENTL-PLSLMRF-MTLSMPSSRDDVLQILDRV 114
+ I +G+ P I+ L L +RF L P + + + L +V
Sbjct: 61 QGEPIRRQRDEYHQDLLYLGHQP---GIKTELTALENLRFYQRLHGPGDDEALWEALAQV 117
Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
L G + ++ LS G+ +R LA+ L + L +LDEP ID
Sbjct: 118 GLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 71.2 bits (174), Expect = 2e-13
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 10 LISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV- 67
+I L N S+ + +G L++IN IK E + +IG NGSGKST+A + G+++P G V
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 68 ---------KRHPQL--IVGYVPQKV-------TIENTLPLSLMRFMTLSMPSS--RDDV 107
+ + +VG V Q T+E L L +P R V
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP---ENLCLPPIEIRKRV 117
Query: 108 LQILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLY 166
+ L + L KY +R+ K LSGG+ Q LA L +P L+ DE +D +++
Sbjct: 118 DRALAEIGL-EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 167 ELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTI 213
E I + + G I+ I+HNL + + ++ +I +G P+ +
Sbjct: 177 ERIKKLHEK-GKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 71.0 bits (174), Expect = 2e-13
Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS--VKRHPQLIV 75
F + + ++ ++FT++ + + +IG NGSGKST+AK++ G+I+PT G + HP L
Sbjct: 21 FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP-LHF 79
Query: 76 G---YVPQKV---------------TIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
G Y Q++ I L L L +++ L +V L+
Sbjct: 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 118 GKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
+ + L+ G+ QR LA+AL+ +P +++ DE L +D L L+ +++
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ 199
Query: 177 GCGILLISHNLHMVMASTDTVICLNN 202
G + ++ +L M+ +D V+ ++
Sbjct: 200 GISYIYVTQHLGMMKHISDQVLVMHQ 225
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 70.4 bits (172), Expect = 4e-13
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 35/220 (15%)
Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK---- 61
+ P I + + SF+ N K ++ I+ I N++ +IGP+G GKST K + I +
Sbjct: 3 QLIPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGP 62
Query: 62 -PTIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRF----MTLSMPSS 103
G V Q I +G V Q+ N P+S+ + +S
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQR---PNPFPMSIYENVAYGVRISAKLP 119
Query: 104 RDDVLQILDRV--------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQ 155
+ D+ +I++ + K N++ LSGG+ QR +A+AL KP +L++DEP
Sbjct: 120 QADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 156 GIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
+D + + ELI S+R I +++HN+ +D
Sbjct: 180 ALDPIATMKVEELIHSLRSEL--TIAIVTHNMQQATRVSD 217
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 70.4 bits (172), Expect = 4e-13
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 26/223 (11%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS---------------- 66
+K L + + T K N++ +IG GSGKST+ +L G+I G
Sbjct: 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83
Query: 67 -VKRHPQLI--VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL----QILDRVNLIGK 119
VKR + I V P+ + T+ + F +++ ++ + ++L V L
Sbjct: 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIA-FGPVNLGENKQEAYKKVPELLKLVQLPED 142
Query: 120 Y-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
Y R+ +LSGG+ +R LA + N LVLDEP G+D GE L + +
Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK 202
Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYI 220
I++++HN+ V+ D VI ++ ++ G P I N E +
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 70.2 bits (172), Expect = 5e-13
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 11 ISLSNTSF--HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
I+ N F + ++L ++N IKP E + ++GP+GSGKST+ KL+ + P G V
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV- 514
Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMP-------SSRDDVLQ---------ILD 112
L+ G V + P L R M + + S RD++ ++
Sbjct: 515 ----LVDG-----VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIH 565
Query: 113 RVNLIGK----------YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
L G YN + + LSGG+ QR +A+AL+ P +L+ DE +D
Sbjct: 566 AAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG 208
+ E + + + G +++I+H L V A ++ +I G
Sbjct: 626 YESEALIMRNMREI--CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG 673
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 70.0 bits (171), Expect = 5e-13
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP--TIGSV- 67
I + + +L D++ I+ E++ LIG +G GK+T+ + I G +K G +
Sbjct: 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65
Query: 68 ------------KRHPQLIV---GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILD 112
KR L+ P + +E+ + L R + + V L
Sbjct: 66 IADRDLTHAPPHKRGLALLFQNYALFPH-LKVEDNVAFGL-RAQKMPKADIAERVADALK 123
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
V L LSGG QR +A+A+ +P++L+LDEPL +D ++ E I ++
Sbjct: 124 LVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183
Query: 173 -RQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215
+ IL ++H+ + D + + R+ G PQ + D
Sbjct: 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 69.7 bits (171), Expect = 6e-13
Identities = 54/208 (25%), Positives = 98/208 (47%), Gaps = 20/208 (9%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
++L N + I +DIN I E V +GP+G GKST+ ++I G+ T G +
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 71 PQLI---------VGYVPQKVTIENTLP-LSLMRFMTLSMPSSRDDVLQILDRVNLIGK- 119
+ + VG V Q + P LS+ M+ + + +I RVN + +
Sbjct: 64 EKRMNDVPPAERGVGMVFQSYAL---YPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120
Query: 120 ------YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR 173
+R K LSGG+ QR + + L+ +P++ +LDEPL +D + + I+ +
Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 174 QSTGCGILLISHNLHMVMASTDTVICLN 201
+ G ++ ++H+ M D ++ L+
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLD 208
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 69.5 bits (170), Expect = 7e-13
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 17/210 (8%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
++S S H + L +++ I EIVTLIG NG+GK+T+ + G + T G +
Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63
Query: 69 RHPQLIVGYVPQKVTIENT--LPLSLMRF--MT----LSMP---SSRDDVLQILDRV--- 114
+ I + K+ E +P F MT L+M + RD + + V
Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYEL 123
Query: 115 --NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
L + + +SGGE Q + +AL+ +P LL+LDEP G+ +++ I +
Sbjct: 124 FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL 183
Query: 173 RQSTGCGILLISHNLHMVMASTDTVICLNN 202
R+ G I L+ N + + D L N
Sbjct: 184 REQ-GMTIFLVEQNANQALKLADRGYVLEN 212
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 68.9 bits (168), Expect = 1e-12
Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 21/229 (9%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI-------- 74
Y + +++ I +IGPNG GKST+ + ++ ++ P G V + I
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 75 ---VGYVPQKVTIENTLPLSLM----RF-----MTLSMPSSRDDVLQILDRVNLIGKYNR 122
+G + Q T + + + R+ T + V + + + ++
Sbjct: 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
++ LSGG+ QRA +A L ++ +++LDEP +D ++ L EL++ + + G +
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAA 199
Query: 183 ISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAEYIRLFGTRATEI 230
+ H+L+ +I L +I QG P+ I R++G R I
Sbjct: 200 VLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMII 248
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 69.1 bits (169), Expect = 1e-12
Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 38/238 (15%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT----------IGSVKRH 70
N L +I++T + N+I +IG +GSGKST+ G+IK IG K +
Sbjct: 37 NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96
Query: 71 PQLIVGYVPQKVT--------------------IENTLPLSLMRFMTLSMPSSRDDVLQI 110
+LI +K+ ++T+ +M F +++ + + ++
Sbjct: 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIM-FGPVALGVKKSEAKKL 155
Query: 111 ----LDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
L+++ L Y R+ LSGG+ +R +A L +P +L+ DEP G+D GE +
Sbjct: 156 AKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEM 215
Query: 166 YELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRL 222
+LI + + + +I+H + V+ D VI ++ +I G P I + I
Sbjct: 216 MQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 68.9 bits (168), Expect = 1e-12
Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 35/238 (14%)
Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI---------- 56
+T L+S + + + + ++++N ++ + LIGP+G GK+T + I
Sbjct: 1 MTLLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60
Query: 57 --TG--------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPL--SLMRFMTLSMPSSR 104
TG I P + V + VG V QK T+ + +++ + L+ R
Sbjct: 61 RVTGRILLDGQDIYGPRVDPVAMRRR--VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR 118
Query: 105 DDVLQILDRVNLIGKYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
D ++++ +R +KD LSGG+ QR +A+AL +P +L++DEP
Sbjct: 119 DHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTV-ICLNNRICYQGPPQTI 213
+D + +L+T +++ T I++++HN+H +DT L + GP +
Sbjct: 179 LDPASTARIEDLMTDLKKVT--TIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 67.4 bits (164), Expect = 3e-12
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 33/218 (15%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85
L ++F+I E V++IG NGSGKST A+LI G+ + G VK I G + +T E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK-----IDG---ELLTAE 74
Query: 86 NTLPLSLMRFMTLSMPSS---------------------RDDVLQILDR----VNLIGKY 120
N L M P + R+++++ +D VN++
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
R LSGG+ QR +A + +P +++LDE +D G + +I +++ +
Sbjct: 135 TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194
Query: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNAE 218
L I+H+L +S ++ I + P + +E
Sbjct: 195 LSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 67.6 bits (166), Expect = 3e-12
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------K 68
+N T+ I + G +G+GK+++ I+G+ +P G + K
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 69 RHPQLIVGYVPQKV------TIENTLPLSLMRF-MTLSMPSSRDDVLQILDRVNLIGKYN 121
R +GYV Q + L R+ M SM + D ++ +L L+ +Y
Sbjct: 76 RR----IGYVFQDARLFPHYKVRGNL-----RYGMAKSMVAQFDKIVALLGIEPLLDRYP 126
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
LSGGE QR + +ALL P LL++DEPL +D P + L + + + IL
Sbjct: 127 G---SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 182 LISHNLHMVMASTDTVICLNN 202
+SH+L ++ D V+ L
Sbjct: 184 YVSHSLDEILRLADRVVVLEQ 204
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 67.1 bits (164), Expect = 3e-12
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 35/216 (16%)
Query: 11 ISLSNTSF-HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68
I + N SF +++ +LQ+IN ++ V L+G GSGKST+A L+ G T G ++
Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 69 --------RHPQLI--VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-- 116
H L V V Q + L + + +TL S + V Q L+ V L
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVV---LADTFLANVTLGRDISEEQVWQALETVQLAE 457
Query: 117 ------------IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
+G+ N LS G+ Q LA+ L++ P +L+LDE ID E +
Sbjct: 458 LARSLPDGLYTPLGEQGNN---LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICL 200
+ + + +VR+ T +++I+H L ++ + DT++ L
Sbjct: 515 IQQALAAVREHT--TLVVIAHRLSTIVEA-DTILVL 547
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 67.1 bits (164), Expect = 4e-12
Identities = 48/226 (21%), Positives = 105/226 (46%), Gaps = 31/226 (13%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-------------- 68
++ + D+N + + ++G GSGKST+ + I ++KPT G+V
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79
Query: 69 -RHPQLIVGYV---PQKVTIENTLPLSLM---RFMTLSMPSSRDDVLQILDRVNLIGKYN 121
R + +G V P+ E+T+ ++ + +++ ++ ++L + ++
Sbjct: 80 IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG----FS 135
Query: 122 RNIKDLS-----GGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
R++ S GG+ ++ + L P+++VLDEP G+D + + L+ S++
Sbjct: 136 RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDE 195
Query: 177 GCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
I+L+SH+++ V D VI + I Q P+ + + + +
Sbjct: 196 NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLA 241
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 67.0 bits (164), Expect = 4e-12
Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 54/246 (21%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV---------KRHPQLI 74
K L +++ I E + +IG GSGK+T + + ++ P G++ K+ +
Sbjct: 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80
Query: 75 --------------------------VGYVPQ-------KVTIENTLPLSLMRFMTLSMP 101
VG V Q + TIE + F +SM
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDII-----FGPVSMG 135
Query: 102 SSRDDVLQ----ILDRVNLIGKY-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
S+++ + ++ V L Y R+ +LSGG+ +R LA L +P+ LV DEP G
Sbjct: 136 VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAG 195
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215
+D G + E+ ++ + G I+L++H+L V+ T I + +I G I
Sbjct: 196 LDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILS 254
Query: 216 NAEYIR 221
+ +++
Sbjct: 255 DNKFLI 260
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 67.0 bits (163), Expect = 5e-12
Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------------ 67
++D + I+ EI ++G +GSGKST+ +L+ +I+PT G V
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 68 KRHPQLIV----GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN 123
+R +V +P ++NT M ++ R+ L L +V L +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTA--FGMELAGINAEERREKALDALRQVGLENYAHSY 161
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
+LSGG QR LA+AL P++L++DE +D + + + ++ I+ I
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 184 SHNLHMVMASTDTV-ICLNNRICYQGPPQTIKDNA--EYIRLF 223
SH+L M D + I N + G P I +N +Y+R F
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 66.8 bits (163), Expect = 5e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--------------KPTIGSVKRH 70
IL + P EI+ ++GP+GSGKST+ + G I KPT +KR
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR- 141
Query: 71 PQLIVGYVPQK------VTIENTLPL-SLMRFMTLSMPSSRDDVLQILDRV--------- 114
G+V Q +T+ TL SL+R L ++ + + + + V
Sbjct: 142 ----TGFVTQDDILYPHLTVRETLVFCSLLR---LPKSLTKQEKILVAESVISELGLTKC 194
Query: 115 --NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
+IG N I+ +SGGE +R +A +L P+LL+LDEP G+D L + S+
Sbjct: 195 ENTIIG--NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL 252
Query: 173 RQ 174
Q
Sbjct: 253 AQ 254
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 66.7 bits (163), Expect = 6e-12
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 44/230 (19%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK----------------- 68
L D+N +K E + ++G NGSGKSTIAK + ++ P+ G V
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85
Query: 69 ------RHP--QLIVGYVPQKVTI--ENTLPLSLMRFMTLSMPSS--RDDVLQILDRVNL 116
++P Q++ V + V EN L +P R+ V + L +V +
Sbjct: 86 KAGMVFQNPDNQIVATIVEEDVAFGPEN-----------LGIPPEEIRERVDESLKKVGM 134
Query: 117 IGKYNRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
+Y R+ LSGG+ QR +A L +P ++ DEP +D G + I + +
Sbjct: 135 Y-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK 193
Query: 176 TGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIRLFG 224
G I+LI+H + D +I +++ ++ +G P+ I E ++ G
Sbjct: 194 YGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKIG 242
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 65.8 bits (161), Expect = 9e-12
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 42/238 (17%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGIIKP 62
I + N + + L++IN I N++ LIGP+G GKST+ + L+ G+
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV--R 58
Query: 63 TIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
G V Q I VG V QK N P+S+ + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK---PNPFPMSIYDNIAYGPRLHGIKDKK 115
Query: 110 ILDRV---NLIG---------KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
LD + +L + + + LSGG+ QR +A+AL +P +L+LDEP +
Sbjct: 116 ELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 158 DFPGELSLYELITSVRQS-TGCGILLISHNLHMVMASTDTVI-CLNNRICYQGPPQTI 213
D + ELI +++ T I++++HN+ +D + + GP + I
Sbjct: 176 DPIATGKIEELIQELKKKYT---IVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 65.9 bits (161), Expect = 9e-12
Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 45/233 (19%)
Query: 10 LISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG-- 65
+ N +F L I+ I+P E V L+G +GSGKST+ LI +P G
Sbjct: 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI 389
Query: 66 -------------SVKRHPQLIVGYVPQKV-----TIENTLPLSLMRFMTLSMPSSRDDV 107
S++R V V Q V TI N + + R ++
Sbjct: 390 LLDGHDLADYTLASLRRQ----VALVSQDVVLFNDTIANNIAYGRTE------QADRAEI 439
Query: 108 LQILDRVNLIGKYNR-----------NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
+ L ++ N LSGG+ QR +A+ALL+ +L+LDE
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGP 209
+D E + + + Q G L+I+H L + + V+ + RI +G
Sbjct: 500 LDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 65.5 bits (159), Expect = 1e-11
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 29/229 (12%)
Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
M S + ++S + N IL+DI I N I ++GP+GSGKST+ K++ +I
Sbjct: 1 MEAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI 60
Query: 61 KPTIGSVKRHPQLI-----------------VGYVPQK------VTIENTLPLSLMRFMT 97
+ +K +++ VG V Q+ ++I + + L
Sbjct: 61 EIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI 120
Query: 98 LSMPSSRDDVLQILDRVNL----IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
+ V + L +V L + N LSGG+ QR +A+AL KP +L++DEP
Sbjct: 121 KEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180
Query: 154 LQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
ID ++ +LIT ++ I+++SHN V D V L N
Sbjct: 181 TSMIDIVNSQAIEKLITELKNEI--AIVIVSHNPQQVARVADYVAFLYN 227
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 65.5 bits (160), Expect = 1e-11
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 34/240 (14%)
Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
M N + + L +K+G K L+ ++ +I L+GPNG+GKST+ + GI
Sbjct: 1 MDNIIEVEDL-----HFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY 55
Query: 61 KPTIGSVKRHPQLI-----------VGYVPQ-------KVTIENTLPLSLMRFMTLSMPS 102
P G VK + + VG V Q T+ + + F ++M
Sbjct: 56 LPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVA-----FGPVNMGL 110
Query: 103 SRDDVLQ----ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
+D+V + L V + ++ LS G+ +R +A L P+++VLDEP+ +D
Sbjct: 111 DKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLD 170
Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNA 217
G+ +L E++ + G +++ +H++ + D VI L R+ +G + D
Sbjct: 171 PRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 64.8 bits (158), Expect = 2e-11
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 20/197 (10%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
PL+ + S IL I + P + L+G NG+GKST+ KL+ G + P G +
Sbjct: 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMR-----FMTLSMPSSRDDVLQILDRVNLIG---- 118
+ +GY Q L +R L+ + ++ ++ D + G
Sbjct: 370 GLAKGIKLGYFAQH-------QLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD 422
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
K + SGGE R +LA + ++PNLL+LDEP +D +L E + +
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGA--- 479
Query: 179 GILLISHNLHMVMASTD 195
++++SH+ H++ ++TD
Sbjct: 480 -LVVVSHDRHLLRSTTD 495
Score = 43.6 bits (103), Expect = 5e-05
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 42/197 (21%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
+L + TI P + V L+G NG GKST+ L+ I GS + +V Q+
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETP- 74
Query: 85 ENTLPLSLMRFM------------TLSMPSSRDDVLQI------LDRVN----------- 115
LP + ++ L + R+D I LD ++
Sbjct: 75 --ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 116 LIG------KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
L G + R + D SGG R LA+AL+ + +LL+LDEP +D + L + +
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192
Query: 170 TSVRQSTGCGILLISHN 186
S + + ++LISH+
Sbjct: 193 KSYQGT----LILISHD 205
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 64.8 bits (158), Expect = 2e-11
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 24/184 (13%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74
IL + +K E + LIG +GSGKST+ ++ G+ + G V Q +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 75 -----VGYV-------PQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
VG+V P +EN +L+R S SR+ +L+++ L + +
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGE--SSRQSRNGAKALLEQLGLGKRLDH 142
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
LSGGE QR LA+A +P++L DEP +D + +L+ S+ + G ++L
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202
Query: 183 ISHN 186
++H+
Sbjct: 203 VTHD 206
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 64.5 bits (157), Expect = 2e-11
Identities = 55/248 (22%), Positives = 91/248 (36%), Gaps = 44/248 (17%)
Query: 20 KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYV- 78
+ IL+D++ I+P + L+G NG+GKST+ K + G + G + G V
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVT 67
Query: 79 -----------PQKVTIENTLPLSLMRFMTLSM---------PSSR----------DDVL 108
P+ + LP + S P +R +
Sbjct: 68 LNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAW 127
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKAL---------LRKPNLLVLDEPLQGIDF 159
Q L R++ LSGGE R A+ L + P L+LDEP +D
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAE 218
+ L + + + + G+L I H+ ++ D + L + I G P + A
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAH 247
Query: 219 YIRLFGTR 226
R +G
Sbjct: 248 IARCYGFA 255
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 64.6 bits (158), Expect = 2e-11
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 55/210 (26%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI--GSVK---------- 68
+IL+ +N T+K EI ++GPNGSGKST++K I G + G++
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 69 -------------RHPQLIVGYVPQKVTIENTL--------------PLSLMRFMTLSMP 101
++P+ I G V+ L PL L+ F
Sbjct: 71 PDERARAGLFLAFQYPEEIPG-----VSNLEFLRSALNARRSARGEEPLDLLDF------ 119
Query: 102 SSRDDVLQILDRVNLIGKY-NRNIKD-LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+ L + + ++ NR++ + SGGE +R + + L +P L +LDE G+D
Sbjct: 120 --LKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI 177
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHM 189
+ E I +R+ L+I+H +
Sbjct: 178 DALKIVAEGINRLREPDR-SFLIITHYQRL 206
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 64.4 bits (157), Expect = 2e-11
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 35/181 (19%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT--GIIKPTI-- 64
P++ +S+ S + N K L ++ PNEI LIGP+GSGKST+ + I + P +
Sbjct: 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 65 -GSVKRHPQLIVGYVPQKVTIE------------NTLPLSLMRFMT--LSMPSSRDDVLQ 109
GS+ + I Y P+ T++ N P+S+ + L + +D Q
Sbjct: 64 TGSIVYNGHNI--YSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDK--Q 119
Query: 110 ILDRV---NLIGKYNRN-IKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
+LD +L G + +KD LSGG+ QR +A+ L P +++LDEP +
Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 158 D 158
D
Sbjct: 180 D 180
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 64.3 bits (157), Expect = 3e-11
Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 28/198 (14%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK------ 81
D++FT++ EI+ + G G+G++ + K++ G + T G V +V PQ
Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329
Query: 82 VTIEN-------TLPLSLMRFMTLSMP---SSRDDVLQILDRVNLIGKYNR--NIK---- 125
V I L +S+ M+L+ S L+ D + + R NIK
Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389
Query: 126 -----DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
LSGG Q+ +A+ L+ +P +L+LDEP +G+D + +Y+LI + G I
Sbjct: 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSI 448
Query: 181 LLISHNLHMVMASTDTVI 198
+L+S + V+ +D ++
Sbjct: 449 ILVSSEMPEVLGMSDRIL 466
Score = 57.7 bits (140), Expect = 2e-09
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 34/207 (16%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
L+ L G K L + P ++ L+G NG+GKST+ K++TGI GS+
Sbjct: 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61
Query: 68 K-----------RHPQ-----LI---VGYVPQKVTIENTLPLSLMRFMTLS--------M 100
+ Q +I + +PQ EN L R M
Sbjct: 62 LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIF---LGREFVNRFGRIDWKKM 118
Query: 101 PSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160
+ D +L R+NL ++ + +LS GE Q +AK L + ++++DEP +
Sbjct: 119 YAEADKLLA---RLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
Query: 161 GELSLYELITSVRQSTGCGILLISHNL 187
SL+ +I ++ S G GI+ ISH L
Sbjct: 176 ETESLFRVIRELK-SQGRGIVYISHRL 201
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 63.9 bits (155), Expect = 3e-11
Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 18/214 (8%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI--- 74
F +G + +N T N+I +G NG+GK+T ++TG++ PT G+V + I
Sbjct: 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN 997
Query: 75 -------VGYVPQKVTIENTLPLS--LMRFMTLSMPSSRDDVLQ---ILDRVNLIGKYNR 122
+G PQ + + L ++ ++ + L S + L+ +L+ L K N
Sbjct: 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE 1057
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
+DLSGG ++ +A A + ++VLDEP G+D S+++L+ R +G I++
Sbjct: 1058 EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIM 1115
Query: 183 ISHNLHMVMASTDTV-ICLNNRICYQGPPQTIKD 215
+H++ D + I R+ G P +K+
Sbjct: 1116 STHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149
Score = 46.5 bits (110), Expect = 5e-06
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV----------GYVPQKV 82
++P E L+G NG+GK+T K++TG T G + I+ GY PQ
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFD 2021
Query: 83 TIENTLP--LSLMRFMTL-SMPSSRDDVLQ--ILDRVNLIGKYNRNIKDLSGGEFQRALL 137
I++ L L + L +P+ + + + + L +R SGG ++
Sbjct: 2022 AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081
Query: 138 AKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
A AL+ P L++LDEP G+D L+ I S+ + G ++L SH++
Sbjct: 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSM 2130
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 63.5 bits (154), Expect = 4e-11
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 37/214 (17%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG-------------II 60
G+ L D++ I +I+ IGP+G GKST+ + LI G I
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90
Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS-----MPSSRDDVLQ-ILDRV 114
I SVK Q VG V Q+ N P S+ + + + D++++ L R
Sbjct: 91 DSQINSVKLRRQ--VGMVFQR---PNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA 145
Query: 115 NLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
+ + +K+ LSGG+ QR +A+A+ KP++L++DEP +D + EL
Sbjct: 146 AIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNNRI 204
+++ I++++HN+ D N I
Sbjct: 206 ELKEQY--TIIMVTHNMQQASRVADWTAFFNTEI 237
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 63.5 bits (154), Expect = 5e-11
Identities = 59/201 (29%), Positives = 88/201 (43%), Gaps = 53/201 (26%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-----------IAKL-----ITG---------II 60
L DIN I+ N+I LIG +G GKST IAK+ I G +
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 61 KPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDD----VLQILDRVNL 116
+ +G V + P + V + + ++ L M ++D+ V+ L +V L
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLH---------GMIKNKDEEEALVVDCLQKVGL 128
Query: 117 I----GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
K +N LSGG+ QR +A+AL KP LL+LDEP +D + EL+
Sbjct: 129 FEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE- 187
Query: 173 RQSTGCGILLISHNLHMVMAS 193
+SHNL M+M +
Sbjct: 188 ----------LSHNLSMIMVT 198
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 63.4 bits (155), Expect = 5e-11
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 51/213 (23%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--------------------- 59
G K L +++ ++ EIV+L G NG+GKST+ K+++G+
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN 75
Query: 60 IKPT--IGSVKRHPQLIVGYVPQKVTIENT------LPLSLMRFMTLSMPSSRDDVLQIL 111
I+ T G H +L + V + +EN P +M + + + + + +L
Sbjct: 76 IRDTERAGIAIIHQELAL--VKELSVLENIFLGNEITPGGIMDYDAMYLRAQK-----LL 128
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE---- 167
++ L + +L G+ Q +AKAL ++ LL+LDEP SL E
Sbjct: 129 AQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA--------SLTESETA 180
Query: 168 -LITSVR--QSTGCGILLISHNLHMVMASTDTV 197
L+ +R ++ G + ISH L+ V A +DT+
Sbjct: 181 VLLDIIRDLKAHGIACIYISHKLNEVKAISDTI 213
Score = 63.0 bits (154), Expect = 6e-11
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 40/208 (19%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI------------------------ 59
K + D++F+++ EI+ + G G+G++ + + + G
Sbjct: 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335
Query: 60 IKPTIGSV----KRHPQLIVGYVPQKVTIEN-TLPLSLMRFMTLSM---PSSRDDVLQIL 111
I I V KR G VP +N TL +L RF S + +L+ +
Sbjct: 336 IAQGIAMVPEDRKRD-----GIVPVMGVGKNITLA-ALDRFTGGSRIDDAAELKTILESI 389
Query: 112 DRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
R+ + I LSGG Q+A+LAK LL P +L+LDEP +GID + +Y+LI
Sbjct: 390 QRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLIN 449
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVI 198
+ Q G I++IS L V+ +D V+
Sbjct: 450 QLVQQ-GVAIIVISSELPEVLGLSDRVL 476
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 63.4 bits (154), Expect = 5e-11
Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 41/247 (16%)
Query: 13 LSNTSFHKN--GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
L+ HK +++L+ ++ +++++IG +GSGKST + I + KP+ GS+ +
Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65
Query: 71 PQLI--VGYVPQKVTIENTLPLSLMR--------------FMT--------------LSM 100
Q I V ++ + + L L+R MT LS
Sbjct: 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 125
Query: 101 PSSRDDVLQILDRVNLI----GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
+R+ ++ L +V + GKY LSGG+ QR +A+AL +P +L+ DEP
Sbjct: 126 QEARERAVKYLAKVGIDERAQGKYP---VHLSGGQQQRVSIARALAMEPEVLLFDEPTSA 182
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKD 215
+D P + I G +++++H + + VI L+ +I +G P+ +
Sbjct: 183 LD-PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
Query: 216 NAEYIRL 222
N + RL
Sbjct: 242 NPQSPRL 248
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 63.2 bits (154), Expect = 6e-11
Identities = 47/204 (23%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK---- 81
++D++F + EI+ + G G+ ++ I + + GI + + G++ H + I + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 82 ----VTIE--------------NTLPLSLMRFMT----LSMPSSRDDVLQILDRVNL-IG 118
VT E N+L ++ + L + D ++D + +
Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP 383
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
+ I LSGG Q+ ++ + LL +P +L+LDEP +GID + +Y+LI + +
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DK 442
Query: 179 GILLISHNLHMVMASTDTVICLNN 202
GI++IS + ++ TD ++ ++N
Sbjct: 443 GIIIISSEMPELLGITDRILVMSN 466
Score = 54.4 bits (131), Expect = 3e-08
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQK 81
G K L ++N ++P+ I L+G NG+GKST+ K + GI + GS+ + + + K
Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE-IDFKSSK 68
Query: 82 VTIEN-------TLPLSLMRFMTLSMPSSR--------------DDVLQILDRVNLIGKY 120
+EN L L L R + +M R D I D +++
Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP 128
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
+ LS + Q +AKA ++++DEP + L+ +I +++ GCGI
Sbjct: 129 RAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGI 187
Query: 181 LLISHNLHMVMASTDTVICL 200
+ ISH + + D + L
Sbjct: 188 VYISHKMEEIFQLCDEITIL 207
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 62.9 bits (153), Expect = 7e-11
Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI---------------------I 60
G K L I+ ++P E V L G NG+GKST+ K+++G+ I
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 61 KPT--IGSVKRHPQLIVGYVPQKVTIEN-------TLPLSLMRFMTLSMPSSRDDVLQIL 111
+ T G V H +L + VP+ EN TLP M + + + + +L
Sbjct: 73 RDTERAGIVIIHQELTL--VPELSVAENIFLGNEITLPGGRMAYNAMYLRAK-----NLL 125
Query: 112 DRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
+ L R + D GG+ Q +AKAL ++ LL+LDEP + L ++I
Sbjct: 126 RELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTV 197
++ G + ISH L+ V A DT+
Sbjct: 186 DLKAH-GVACVYISHKLNEVKAVCDTI 211
Score = 59.5 bits (144), Expect = 7e-10
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 38/207 (18%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI------------------------ 59
K + D++F+++ EI+ + G G+G++ + + + G
Sbjct: 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA 333
Query: 60 IKPTIGSV----KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM---PSSRDDVLQILD 112
I+ I V KRH G VP +N L F + + +
Sbjct: 334 IRAGIAMVPEDRKRH-----GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQ 388
Query: 113 RVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITS 171
R+ + I LSGG Q+A+LAK LL P +L+LDEP +G+D + +Y+LI
Sbjct: 389 RLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQ 448
Query: 172 VRQSTGCGILLISHNLHMVMASTDTVI 198
+ Q G I+++S L V+ +D V+
Sbjct: 449 LAQE-GVAIIVVSSELAEVLGLSDRVL 474
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 62.8 bits (153), Expect = 7e-11
Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 42/211 (19%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I + + + + + ++D+N I+P + IGP+G GKST+ + + + + G+
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 71 PQLIVG---YVP--QKVTIENTLPLSLMR---FMTLSMPSSRDDVLQILDRVNLIGKYNR 122
L+ G Y P V + T+ + R F T+S+ RD+V+ + L G N+
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSI---RDNVVA---GLKLNGVRNK 118
Query: 123 N------------------IKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
+KD LSGG+ QR +A+A+ +P++L++DEP
Sbjct: 119 KDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNL 187
+D L++ +LI ++Q I++++HN+
Sbjct: 179 LDPISTLAIEDLINELKQDY--TIVIVTHNM 207
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 62.2 bits (152), Expect = 1e-10
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 32/198 (16%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
++ + + + G + ++FT+ E + L GPNGSGK+T+ +LI G++ P G++K
Sbjct: 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60
Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRFM--------TLSMP-----------SSRDDVLQ 109
I++ ++ L++ D+
Sbjct: 61 LDGG----------DIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAA 110
Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
L+ V L + LS G+ +R LA+ L+ + +LDEP +D ELI
Sbjct: 111 ALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
Query: 170 TSVRQSTGCGILLIS-HN 186
+ + G GI++ + H
Sbjct: 171 RA-HLAQG-GIVIAATHI 186
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 62.3 bits (151), Expect = 1e-10
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI--IKPT---IGSV 67
++ +F+ GY+ L++IN + ++ LIGP+G GKST + + + P G +
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSS---------------RDDVLQ--- 109
HP + P+ IE + +S++ P S R +L+
Sbjct: 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERV 138
Query: 110 --ILDRVNLIGKYNRNIKDL----SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
L L + + DL SGG+ QR +A+AL P +L+ DEP +D
Sbjct: 139 ENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
Query: 164 SLYELITSVRQSTGCGILLISHNLHMVMASTD 195
S+ ELI+ ++ IL+++HN+ +D
Sbjct: 199 SIEELISDLKNKV--TILIVTHNMQQAARVSD 228
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 61.8 bits (151), Expect = 1e-10
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 53/202 (26%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK------------ 68
+G + +NFT+ + + L+GP+G+GK+++ + G + P GS+K
Sbjct: 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPE 419
Query: 69 ---RH-------PQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVL-QILDRVN- 115
+H PQL G T+ +N L L P + D+ L Q L+
Sbjct: 420 SWRKHLSWVGQNPQLPHG------TLRDNVL---------LGNPDASDEQLQQALENAWV 464
Query: 116 ------LIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
L + I D LS G+ QR LA+ALL+ LL+LDEP +D E +
Sbjct: 465 SEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524
Query: 166 YELITSVRQSTGCGILLISHNL 187
+ + + + L+++H L
Sbjct: 525 MQALNAASRRQTT--LMVTHQL 544
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 61.9 bits (151), Expect = 2e-10
Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 2 SNALSITPLISLSNTSFH--KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI 59
A + L N +F NG+ + IN TIK E++ LIG NGSGKST+A L+TG+
Sbjct: 314 PQAFPDWQTLELRNVTFAYQDNGFS-VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372
Query: 60 IKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL--------------------- 98
+P G + L+ G + VT E + L
Sbjct: 373 YQPQSGEI-----LLDG---KPVTAEQ-----PEDYRKLFSAVFTDFHLFDQLLGPEGKP 419
Query: 99 SMPSSRDDVLQIL---DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
+ P+ + L+ L ++ L N+K LS G+ +R L AL + ++L+LDE
Sbjct: 420 ANPALVEKWLERLKMAHKLELEDGRISNLK-LSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 61.6 bits (149), Expect = 2e-10
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
+I N + +K L +IN I N I LIGP+G GKST + + + + +K
Sbjct: 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM-NDLVEGIKI 65
Query: 70 HPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVN-------------- 115
+I Y + + N L L R + + + ++ I D ++
Sbjct: 66 EGNVI--YEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKL 123
Query: 116 ----------------LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+ K N N LSGG+ QR +A+ L +PN++++DEP +D
Sbjct: 124 DEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRI 204
+ ELI ++++S I++++HN+ +D T LN I
Sbjct: 184 ISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCI 227
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 61.4 bits (150), Expect = 2e-10
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 11 ISLSNTS--FHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS 66
I L N S F + G I L +++ I EI +IG +G+GKST+ + I + +PT G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMR---------FMTLS---------MP-----SS 103
V L+ G Q +T + L R F LS +P +
Sbjct: 62 V-----LVDG---QDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTP 113
Query: 104 RDD----VLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+ + V ++L+ V L K +R LSGG+ QR +A+AL P +L+ DE +D
Sbjct: 114 KAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 160 PGELSLYELITSVRQSTGCGILLISH 185
S+ EL+ + + G I+LI+H
Sbjct: 174 ATTRSILELLKDINRELGLTIVLITH 199
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 61.4 bits (149), Expect = 2e-10
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 37/239 (15%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTI-------------AKLITG 58
S+ N + +IL DIN I E+ IGP+G GKST K+
Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66
Query: 59 IIKPTIGSVKRHPQLI-----VGYVPQKVTIENTLPLSL---------MRFMTLSMPSSR 104
+ I ++ VG V QK N P S+ + + +
Sbjct: 67 LDIDGIDVYSVDTNVVLLRAKVGMVFQK---PNPFPKSIYDNVAYGPKLHGLAKNKKKLD 123
Query: 105 DDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160
+ V + L V L + +KD LSGG+ QR +A+A+ KP +L++DEP +D
Sbjct: 124 EIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAE 218
+ LI ++++ I++++H++ +D V + RI Q I N +
Sbjct: 184 ATNVIENLIQELKKNF--TIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 61.1 bits (148), Expect = 2e-10
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLIV---GYVPQ 80
L +I+F + EIV +IG NGSGKST++ LI G+ P G+V K LI G Q
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 81 KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKY-NRNIKDLSGGEFQRALLAK 139
IEN LM M L+ ++ + +I++ + IGK+ + +K S G R A
Sbjct: 100 LTGIENIELKGLM--MGLTKEKIKEIIPEIIEFAD-IGKFIYQPVKTYSSGMKSRLGFAI 156
Query: 140 ALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMV 190
++ P++LV+DE L D + + ++ G I ISH+L V
Sbjct: 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQV 206
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 60.9 bits (147), Expect = 3e-10
Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 39/221 (17%)
Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG- 58
+ P I + +F + +++L++IN +I +IGP+G GKST+ + +++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 59 ------------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLM-------RFMTLS 99
I P + V + VG V Q+ N P S+ R + +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKR--VGMVFQQ---PNPFPKSIFDNVAFGPRMLGTT 115
Query: 100 MPSSRDDVLQ-ILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPL 154
S D+V++ L + L + N+ LSGG+ QR +A+ L +P ++++DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
+D + + EL+ ++Q+ I +++HN+ ++D
Sbjct: 176 SALDPVSTMRIEELMQELKQNY--TIAIVTHNMQQAARASD 214
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 60.9 bits (148), Expect = 3e-10
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 44/238 (18%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGIIKPT 63
IS+ + ++ L+ IN I+ N++ LIGP+G GKST + LI +
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV--KI 61
Query: 64 IGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLM-------RFMTLSMPSS 103
G V Q I VG V Q+ N P+S+ R +
Sbjct: 62 EGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQ---PNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 104 RDDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQG 156
D++++ + D V + ++ LSGG+ QR +A+AL +P +L++DEP
Sbjct: 119 LDEIVEKSLKGAALWDEVK--DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176
Query: 157 IDFPGELSLYELITSVRQSTGCGILLISHNLHM-VMASTDTVICLNNRICYQGPPQTI 213
+D L + ELI +++ I++++HN+ S T LN I G +
Sbjct: 177 LDPISTLKIEELIQELKKDY--TIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 60.4 bits (146), Expect = 4e-10
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 35/215 (16%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH 70
I + +F + L+ I+ I+ +V IGP+G GKST +L + +
Sbjct: 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG 63
Query: 71 PQLI------------------VGYVPQKVTIENTLPLSLMRFMTLSMPSS--------R 104
I VG V Q+ N P S+ + + + R
Sbjct: 64 EIRIDGRNIYDKGVQVDELRKNVGMVFQR---PNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 105 DDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFP 160
V + L L + +K+ LSGG+ QR +A+A+ P++L++DEP +D
Sbjct: 121 QRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPI 180
Query: 161 GELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
+ ELI +++ I++++HN+ +D
Sbjct: 181 STAKVEELIHELKKDY--TIVIVTHNMQQAARVSD 213
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 60.1 bits (146), Expect = 5e-10
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 24/209 (11%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP----TIGSVKRHPQLIVGYVPQKVT 83
++ T++ ++ L+G +GSGKS GI+ T G V + + +
Sbjct: 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80
Query: 84 IENTL--------PLSLMR------FMTLSMPSSRDDVLQILDRVNLIGKYNRNIK---- 125
I + PL M + L P+ + L+ V L R +K
Sbjct: 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL-ENAARVLKLYPF 139
Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
++SGG QR ++A ALL + ++ DEP +D + + +L+ S+ Q G+LL++H
Sbjct: 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
Query: 186 NLHMVMASTDTVICLNN-RICYQGPPQTI 213
++ +V D V +++ RI QG +T+
Sbjct: 200 DMGVVARLADDVAVMSHGRIVEQGDVETL 228
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 59.6 bits (144), Expect = 6e-10
Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 39/218 (17%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK------------LIT 57
+I+ S+ ++ L+ I+ NEI LIGP+G GKST + IT
Sbjct: 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64
Query: 58 G--------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
G I P V+ Q VG V Q+ N P S+ + + +
Sbjct: 65 GNVSLRGQNIYAPNEDVVQLRKQ--VGMVFQQ---PNPFPFSIYENVIYGLRLAGVKDKA 119
Query: 110 ILDRV------------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
+LD + + + LSGG+ QR +A+ L KP++++LDEP +
Sbjct: 120 VLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSAL 179
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
D + ++ +R I+L++H++H +D
Sbjct: 180 DPISSTQIENMLLELRDQY--TIILVTHSMHQASRISD 215
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 59.7 bits (145), Expect = 6e-10
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 31/197 (15%)
Query: 19 HKNGYKILQ---DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-RH---- 70
H+ G L +++ T+ E V L GP+G+GKST+ K + P G + RH
Sbjct: 14 HQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAW 73
Query: 71 -------PQLIV-------GYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQI 110
P+ ++ GYV Q +V+ + L+ + ++R ++
Sbjct: 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE-RGVPREAARARAREL 132
Query: 111 LDRVNLIGK-YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
L R+N+ + ++ SGGE QR +A+ + +L+LDEP +D + ELI
Sbjct: 133 LARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 170 TSVRQSTGCGILLISHN 186
+ G ++ I H+
Sbjct: 193 AEAKAR-GAALIGIFHD 208
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 59.7 bits (145), Expect = 6e-10
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GSV--------KRHPQL 73
+L++++ KP E++ ++G +G+GK+T+ + + GSV + +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 74 IVGYVPQ------KVTIENTLPLSLMRFMTLSMPSS--RDDVLQILDRVNL-------IG 118
I YV Q +T+ L M + R+ V ++L + L IG
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
R +K LSGGE +R A LL P LL DEP G+D S+ +++ + Q
Sbjct: 160 VPGR-VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKT 218
Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQGPPQ 211
I I + D +I + R+ Y G P
Sbjct: 219 IICTIHQPSSELFELFDKIILMAEGRVAYLGSPD 252
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 59.6 bits (144), Expect = 6e-10
Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 40/237 (16%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT------------ 57
++ + + S + + + DI+ I+ + + LIGP+G GKST + I
Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 58 --------GIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
I+ I V + +G V QK N P S+ +T ++ + +
Sbjct: 81 GEILYEGLNILDSNINVVNLRRE--IGMVFQK---PNPFPKSIYNNITHALKYAGERRKS 135
Query: 110 ILDRV------------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
+LD + + + + + LSGG+ QR +A+ L KP +L+LDEP +
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTI 213
D + ELIT +++ I++++HN+ + +D T LN + + I
Sbjct: 196 DPISNAKIEELITELKEEY--SIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 59.5 bits (144), Expect = 8e-10
Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 37/201 (18%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74
L++IN +I NE+ +IGP+G GKST K + +I+ + +VK ++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ-MVPNVKLTGEMNYNGSNILKGKV 86
Query: 75 --------VGYVPQKVTIENTLPLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYNR 122
+G V QK N P S+ + + ++ + +I+++
Sbjct: 87 DLVELRKNIGMVFQK---GNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 123 NIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
+KD LSGG+ QR +A+AL P++L++DEP +D + ELI +++
Sbjct: 144 EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
Query: 175 STGCGILLISHNLHMVMASTD 195
I++++HN+ +D
Sbjct: 204 KY--TIVIVTHNMQQAARVSD 222
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 59.5 bits (144), Expect = 9e-10
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI----------- 74
L++IN I NE+ +IGP+G GKST K + +++ + SVK +++
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE-LVPSVKTTGKILYRDQNIFDKSY 98
Query: 75 --------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV------------ 114
VG V QK N P S+ +T + LD +
Sbjct: 99 SVEELRTNVGMVFQK---PNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD 155
Query: 115 NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
L + + N LSGG+ QR +A+ L +P+++++DEP +D L + EL+ +++
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215
Query: 175 STGCGILLISHNLHMVM-ASTDTVICLN 201
I++++HN+ S T LN
Sbjct: 216 DY--SIIIVTHNMQQAARISDKTAFFLN 241
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 59.3 bits (144), Expect = 9e-10
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 30/202 (14%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVP-QKV 82
K + + + E + ++G +G GKST A+ I G++K T G V + ++G +
Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWR 94
Query: 83 TIENTL------PL-SLMRFMT---------------LSMPSSRDDVLQILDRV----NL 116
+ + + PL SL MT LS +D V ++ +V NL
Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL 154
Query: 117 IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQST 176
I NR + SGG+ QR +A+AL+ +P L++ DEP+ +D + + L+ +++
Sbjct: 155 I---NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211
Query: 177 GCGILLISHNLHMVMASTDTVI 198
G ++ I+H+L +V +D V+
Sbjct: 212 GLSLIFIAHDLAVVKHISDRVL 233
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 59.3 bits (143), Expect = 1e-09
Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 27/248 (10%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK- 68
+++ S+ F +L+ +N + + L+G NG GKST+ ++G+++P G+V
Sbjct: 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60
Query: 69 ---------------RHPQLIVGYVPQK----VTIENTLPLSLMRFMTLSMPSSR--DDV 107
R V P++ I++ + SL +R D+
Sbjct: 61 QGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEA 120
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
L ++D + ++ I+ LS G+ +R +A AL+ + L+LDEP G+D G +
Sbjct: 121 LTLVDAQHF---RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTDTVICL-NNRICYQGPPQTIKDNAEYIRLFGTR 226
+I + G +++ SH++ ++ +D V L +I G P + E + G
Sbjct: 178 IIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLT 236
Query: 227 ATEILAIH 234
++ +H
Sbjct: 237 QPWLVKLH 244
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 59.1 bits (143), Expect = 1e-09
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 18 FHKNG-YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIV- 75
HKN + L DI+ +++ L+G NGSGKST++ +I G + PT+G V R+ ++ V
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVI 90
Query: 76 ----GYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---NLIGKY-NRNIKDL 127
G Q IEN + F L M R ++ + ++ + +G++ + +K
Sbjct: 91 AISAGLSGQLTGIEN------IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKY 144
Query: 128 SGGEFQRALLAKALLRKPNLLVLDEPL 154
S G + + + P++LV+DE L
Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEAL 171
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 58.4 bits (141), Expect = 1e-09
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 42/211 (19%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENT 87
D++F K + V ++GP G+GK+T+ L+ + PT+G + LI G VT E+
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-----LIDGIDINTVTRESL 407
Query: 88 -------------LPLSLMRFMTLSMPSSRDDVLQ-----------ILDRVN----LIGK 119
S+ + L + D+ + IL R N L+G+
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE 467
Query: 120 Y-NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
NR LSGGE QR +A+A+L+ +LVLDE +D E + I ++R++
Sbjct: 468 RGNR----LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTT 523
Query: 179 GILLISHNLHMVMASTDTVICLNN-RICYQG 208
I I+H L V + D V+ L+ R+ +G
Sbjct: 524 FI--IAHRLSTVR-NADLVLFLDQGRLIEKG 551
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 58.2 bits (141), Expect = 2e-09
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 26/183 (14%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLIVGYV 78
NG +++ ++F + + + GPNG GKS++ +++ + P G K + YV
Sbjct: 463 NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLF-YV 520
Query: 79 PQKVTIEN-TL------PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRN-----IKD 126
PQ+ + TL P S + S D+ QILD V L R ++D
Sbjct: 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGL--SDKDLEQILDNVQLTHILEREGGWSAVQD 578
Query: 127 ----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
LSGGE QR +A+ KP +LDE + E +Y L + G +
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC----REFGITLFS 634
Query: 183 ISH 185
+SH
Sbjct: 635 VSH 637
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 57.3 bits (139), Expect = 3e-09
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 42/195 (21%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85
++D++F KP + V ++GP G+GKST+ L+ + P G + I G + VT
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL-----IDGTDIRTVTRA 405
Query: 86 NTLPLSLMR-----F-------------MTLSMPSSRD-DVLQILDRV---NLI----GK 119
SL R F + + P + D ++ +R + I
Sbjct: 406 -----SLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDG 460
Query: 120 YNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
Y+ + + LSGGE QR +A+ALL+ P +L+LDE +D E + + + +
Sbjct: 461 YDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK- 519
Query: 176 TGCGILLISHNLHMV 190
G +I+H L V
Sbjct: 520 -GRTTFIIAHRLSTV 533
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 57.3 bits (138), Expect = 3e-09
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 47/208 (22%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGI----------------- 59
+ L DIN I N+I LIGP+G GKST + LI+ +
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 60 -----IKPTIGSVKRHPQLI-------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDV 107
++ +G V + P V Y P+ I++ L + L + D+V
Sbjct: 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV 137
Query: 108 LQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYE 167
L ++ LSGG+ QR +A+ + KP+++++DEP +D L + +
Sbjct: 138 KDDL---------KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188
Query: 168 LITSVRQSTGCGILLISHNLHMVMASTD 195
L+ +++ I++++HN+ +D
Sbjct: 189 LMVELKKEY--TIVIVTHNMQQASRVSD 214
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 57.3 bits (139), Expect = 3e-09
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 53/198 (26%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT---------------GIIKPTIGSVKRH 70
L++INF I + V L+G +GSGKSTIA L+T + T+ S++
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 71 PQLIVGYVPQKV-----TIENTLPLSLMRFMTLSMPSSRDDVL----------------Q 109
V V Q V TI N + + SR+ +
Sbjct: 419 ----VALVSQNVHLFNDTIANNIAYARTEQY------SREQIEEAARMAYAMDFINKMDN 468
Query: 110 ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
LD V IG+ N LSGG+ QR +A+ALLR +L+LDE +D E ++ +
Sbjct: 469 GLDTV--IGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 523
Query: 170 TSVRQSTGCGILLISHNL 187
++++ L+I+H L
Sbjct: 524 DELQKNR--TSLVIAHRL 539
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 57.2 bits (138), Expect = 4e-09
Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 51/236 (21%)
Query: 15 NTSFHKNGYKI--LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQ 72
N +F + KI +++++F+++ E + ++G +GSGKS A + +++ G V+
Sbjct: 19 NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78
Query: 73 LIVGYVPQKVTIENTLPLSLMRF-------------MT-----------------LSMPS 102
L+ Q + + + + MR MT L +
Sbjct: 79 LLRRRSRQVIEL-SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA 137
Query: 103 SRDDVL----QILDRVN------LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
SR++ + ++LD+V ++ +Y LSGG QR ++A AL +P +L+ DE
Sbjct: 138 SREEAMVEAKRMLDQVRIPEAQTILSRYPHQ---LSGGMRQRVMIAMALSCRPAVLIADE 194
Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG 208
P +D + + +LI +++ G++ I+H++ +V D V+ + YQG
Sbjct: 195 PTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM-----YQG 245
Score = 53.3 bits (128), Expect = 6e-08
Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGS------------------V 67
++ ++F + P E ++L+G +GSGKST + + +++ G +
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 68 KRHPQLIVGYVPQKVTIENTLPLSLMRFMT----LSMPSSRDDVLQILDRVNLIGKYN-R 122
+R Q I + T+ S+M + L ++ V +L+RV L+ ++ R
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
+ SGG+ QR +A+AL P +++ DE + +D + L+ +++ G L
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF 519
Query: 183 ISHNLHMVMASTDTVICLN-NRICYQGPPQTIKDNAEY 219
ISH++ +V + V + +I GP + + +N ++
Sbjct: 520 ISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQH 557
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 56.8 bits (137), Expect = 4e-09
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 31/190 (16%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII--------------------KPT 63
++L +N I N I L+GP+GSGKST+ ++ +I K
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 64 IGSVKRHPQLIVGY---VPQKVTIEN-TLPLSLMRFMTLSMPSSRDDVLQILDRVNLI-- 117
+ ++R Q++ +P EN L L L R + S ++ V L++ L
Sbjct: 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKELQERVRWALEKAQLWDE 135
Query: 118 --GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
+ + LSGG+ QR +A+AL +P +L+ DEP +D + L +++
Sbjct: 136 VKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD 195
Query: 176 TGCGILLISH 185
I+L++H
Sbjct: 196 M--TIVLVTH 203
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 56.9 bits (137), Expect = 5e-09
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 33/199 (16%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTI----------AK---LITGIIKPTIGSVKRHP 71
+L+ IN TI E V ++G G+GKS++ A+ +I G+ IG
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 72 QLIVGYVPQK-VTIENTLPLSLMRF---------MTLSMPSSRDDVLQILDRVNLIGKYN 121
++ + +PQ V +L ++L F L + + V + D+++ +
Sbjct: 1361 KITI--IPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDH--ECA 1416
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV--RQSTGCG 179
++LS G+ Q LA+ALLRK +LVLDE +D L LI S Q C
Sbjct: 1417 EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD----LETDNLIQSTIRTQFEDCT 1472
Query: 180 ILLISHNLHMVMASTDTVI 198
+L I+H L+ +M T ++
Sbjct: 1473 VLTIAHRLNTIMDYTRVIV 1491
Score = 53.4 bits (128), Expect = 5e-08
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIE 85
L I F+I +V ++G G GKS++ + + G V H + V YVPQ+ I+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV--HMKGSVAYVPQQAWIQ 711
Query: 86 N-TLPLSLMRFMTLSMPSSRDDV--------LQIL---DRVNLIGKYNRNIKDLSGGEFQ 133
N +L +++ L+ + + L+IL DR IG+ N LSGG+ Q
Sbjct: 712 NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTE-IGEKGVN---LSGGQKQ 767
Query: 134 RALLAKALLRKPNLLVLDEPLQGID 158
R LA+A+ ++ + D+PL +D
Sbjct: 768 RVSLARAVYSNADIYLFDDPLSAVD 792
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 56.8 bits (138), Expect = 5e-09
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 27/213 (12%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
+P +S G K L DI+F + ++ L+G NG+GKST+ K+++G +P GS+
Sbjct: 2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI 61
Query: 68 KRHPQ----------LIVG---------YVPQKVTIEN----TLPLSLMRFMTLSMPSSR 104
Q L G VP+ EN LP + ++
Sbjct: 62 LIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLP---HKGGIVNRRLLN 118
Query: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
+ + L+ + + + +K LS G+ Q +AKAL R ++ DEP +
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTV 197
L+ +I +R + G IL +SH + + A D +
Sbjct: 179 LFRVIRELR-AEGRVILYVSHRMEEIFALCDAI 210
Score = 48.0 bits (115), Expect = 2e-06
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 124 IKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
I +LSGG Q+A+L + L +++LDEP +GID + +Y +I + G +L +
Sbjct: 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFV 452
Query: 184 SHNLHMVMASTDTVI 198
S +L V+ D ++
Sbjct: 453 SSDLPEVLGVADRIV 467
Score = 35.3 bits (82), Expect = 0.013
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 22 GYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
G + + I+F+++ EIV L G G+G+S + KL+ G + T G V
Sbjct: 265 GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 56.2 bits (135), Expect = 7e-09
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 49/207 (23%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY-------- 77
++D + I+ NEI IGP+G GKST+ + S+ R L+ G+
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLR-----------SLNRMNDLVKGFRFEGHVHF 72
Query: 78 VPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNR--------------- 122
+ Q V + P+ + R++ + + I D V + NR
Sbjct: 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQG 132
Query: 123 -----NIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169
+KD LSGG+ QR +A+A+ +P +L+LDEP +D + EL+
Sbjct: 133 AALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELM 192
Query: 170 TSVRQSTGCGILLISHNLHMVMASTDT 196
+++ I L++HN+ + DT
Sbjct: 193 VELKKDY--TIALVTHNMQQAIRVADT 217
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 56.3 bits (135), Expect = 7e-09
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 52/220 (23%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGI------------------ 59
+L D+N IK N++ IGP+G GKST + LI G
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 60 ----IKPTIGSVKRHPQLI-------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVL 108
++ IG V + P V Y P+ I + L + +L + D+V
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 109 QILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYEL 168
LD+ LSGG+ QR +A+A+ +P +L++DEP +D + EL
Sbjct: 217 DDLDKAG---------NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267
Query: 169 ITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQG 208
I +++ I++++H++ +D + YQG
Sbjct: 268 ILELKKKY--SIIIVTHSMAQAQRISDETVFF-----YQG 300
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 56.1 bits (135), Expect = 8e-09
Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 14/204 (6%)
Query: 12 SLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
L ++F +L++I+F ++ +++ + G GSGKS++ +I G ++P+ G +K
Sbjct: 428 GLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG 487
Query: 72 QLIVGYVPQKV-----TIENTLPLSL----MRFMTLSMPSSRDDVLQILDRVNLIGKYNR 122
+ + + PQ TI++ + L R+ ++ ++ + + +
Sbjct: 488 R--ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
I LSGG+ R LA+A+ + +L +LD P +D E ++E S IL+
Sbjct: 546 GIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604
Query: 183 ISHNLHMVMASTDTVICLNNRICY 206
S H+ A D ++ L+ +CY
Sbjct: 605 TSKLEHLKKA--DKILLLHEGVCY 626
Score = 48.0 bits (114), Expect = 2e-06
Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Query: 18 FHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------- 68
+ + G +LQD++F+++ + V L+G GSGKST+ + ++ T G ++
Sbjct: 1227 YTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV 1285
Query: 69 --RHPQLIVGYVPQKVTI-ENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL-------IG 118
+ + G +PQKV I T +L + S +++ ++ + V L
Sbjct: 1286 TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWS----DEEIWKVAEEVGLKSVIEQFPD 1341
Query: 119 KYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
K + + D LS G Q LA+++L K +L+LDEP +D ++L + +++Q
Sbjct: 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD---PVTLQIIRKTLKQ 1398
Query: 175 S-TGCGILLISH 185
S + C ++L H
Sbjct: 1399 SFSNCTVILSEH 1410
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 55.6 bits (134), Expect = 1e-08
Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 29/211 (13%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP---TIG 65
PL+ +S S G K +D++F + P E++ ++G +GSGKST+ + G + P T
Sbjct: 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
Query: 66 SVKRHPQLIV-----------------GYVPQ--------KVTIENTLPLSLMRFMTLSM 100
+ R + G+V Q +V+ + LM
Sbjct: 62 YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHY 121
Query: 101 PSSRDDVLQILDRVNL-IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+ R L+ V + + + + SGG QR +A+ L+ +P L+ +DEP G+D
Sbjct: 122 GNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMV 190
+ L +L+ + + G +++++H+L +
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVA 212
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 55.2 bits (133), Expect = 1e-08
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 49/217 (22%)
Query: 17 SFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG----------- 58
SF ++ L DI+ + N++ LIGP+G GKST + LI G
Sbjct: 13 SFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72
Query: 59 --IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL 116
I P + V+ + VG V QK N P S+ + + V + D+ L
Sbjct: 73 ENIYDPHVDVVELRRR--VGMVFQK---PNPFPKSIFENVAYGL-----RVNGVKDKAYL 122
Query: 117 IGKYNRN---------IKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+ R+ +KD LSGG+ QR +A+AL +P +L++DEP +D
Sbjct: 123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTDT 196
+ ELI ++ I++++HN+ +D
Sbjct: 183 IATQKIEELIHELKARY--TIIIVTHNMQQAARVSDV 217
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 55.3 bits (134), Expect = 2e-08
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 60/233 (25%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
PL+S+ + K +D++F + P E++ ++G +GSGK+T+ ++ + P G V
Sbjct: 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63
Query: 68 K---RHPQLIV-----------------GYVPQKVTIENTLPLSLMRFMTLS-------- 99
R QL G+V Q P +R M +S
Sbjct: 64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH-------PRDGLR-MQVSAGGNIGER 115
Query: 100 -MPSS-------RDDVLQILDRVNLIGKYNRNIKDL----SGGEFQRALLAKALLRKPNL 147
M R L+RV + R I DL SGG QR +A+ L+ P L
Sbjct: 116 LMAVGARHYGDIRATAGDWLERVEIDA--AR-IDDLPTTFSGGMQQRLQIARNLVTHPRL 172
Query: 148 LVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL-------H--MVM 191
+ +DEP G+D + L +L+ + + G +++++H+L H +VM
Sbjct: 173 VFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 55.0 bits (133), Expect = 2e-08
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 29/204 (14%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI------------TG 58
I + N +F+ + L++IN I N++ IGP+G GKST+ + G
Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG 73
Query: 59 IIK---PTIGSVKRHPQLI---VGYVPQK-----VTIENTLPLSLMRFMTLSMPSSRDDV 107
I I + K+ L+ VG V QK ++I + + + F LS + V
Sbjct: 74 EILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERV 133
Query: 108 LQILDRVNLIG----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGEL 163
L + L K +++ LSGG+ QR +A+ + +P +L+LDEP +D
Sbjct: 134 EWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG 193
Query: 164 SLYELITSVRQSTGCGILLISHNL 187
+ ELIT ++Q +++++HN+
Sbjct: 194 RIEELITELKQDY--TVVIVTHNM 215
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 54.9 bits (132), Expect = 2e-08
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 23/193 (11%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
PL++ +F +N + ++F + E + + G NG+GK+T+ +++ G++ G ++
Sbjct: 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQ 69
Query: 69 ------------RHPQLIV---GYVPQKVTIENTLPL-SLMRFMTLSMPSSRDDVLQILD 112
R + G T+EN L L MP S L
Sbjct: 70 IDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGS------ALA 123
Query: 113 RVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
V L G + ++ LS G+ +R LA+ L L +LDEP +D G ++L + S
Sbjct: 124 IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEG-ITLVNRMISA 182
Query: 173 RQSTGCGILLISH 185
G L+ +H
Sbjct: 183 HLRGGGAALVTTH 195
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 54.6 bits (132), Expect = 2e-08
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 45/215 (20%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGI- 59
+ + N + + L DI+ I N + IGP+G GKST+ + L+
Sbjct: 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 60 IKPTIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSL-------MRFMTLS 99
I+ G ++ Q I VG V Q+ N P S+ +R ++
Sbjct: 83 IE---GEIRLDGQNIYDKKVDVAELRRRVGMVFQR---PNPFPKSIYENVVYGLRLQGIN 136
Query: 100 MPSSRDDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
D+ ++ + D V + + N LSGG+ QR ++A+A+ +P +L+LDE
Sbjct: 137 NRRVLDEAVERSLRGAALWDEVK--DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194
Query: 153 PLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
P +D L + ELIT ++ I++++HN+
Sbjct: 195 PTSALDPISTLKIEELITELKSKY--TIVIVTHNM 227
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 54.7 bits (131), Expect = 2e-08
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 42/237 (17%)
Query: 7 ITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKL----------- 55
+ +IS + Y+ L I+ + E+ LIGP+G GKST +
Sbjct: 1 MENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENI 60
Query: 56 -ITGIIK--------PTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMT--LSMPSSR 104
ITG IK + V+ + VG V Q+ T P S+ + L + +
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKE--VGMVFQQPT---PFPFSVYDNVAYGLKIAGVK 115
Query: 105 DDVLQILDRVNLIGK-----------YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEP 153
D L I RV K +RN + SGG+ QR +A+AL +P +++LDEP
Sbjct: 116 DKEL-IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP 174
Query: 154 LQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGP 209
+D + E + ++ ++++HNL +D T +N + GP
Sbjct: 175 TSALDPISSSEIEETLMELKHQY--TFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 53.8 bits (129), Expect = 4e-08
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
++ + F + +LQ I+F + ++ L G NG+GK+T+ KLI G++ P G +
Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60
Query: 70 HPQLI----------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGK 119
Q I + +V + I L L + + ++ +L
Sbjct: 61 ERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL 120
Query: 120 YNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVR--QSTG 177
+ LS G+ ++ L + + K L +LDEPL +D ELSL +IT ++ ++ G
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD---ELSLLTIITKIQEHRAKG 177
Query: 178 CGILLISH 185
+LL SH
Sbjct: 178 GAVLLTSH 185
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 53.6 bits (129), Expect = 4e-08
Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 24/210 (11%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRH----PQLIVGYVPQ 80
L+++NFT+KP +++ + GP GSGKST+ LI + G ++ H +L +
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389
Query: 81 KVTIENTLPL----SLMRFMTLSMP-SSRDDVLQIL-------DRVNLIGKYNRNIKD-- 126
++ + + P ++ + L P +++ ++ + D + L Y+ + +
Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERG 449
Query: 127 --LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLIS 184
LSGG+ QR +A+ALL +L+LD+ L +D E ++++ ++RQ ++IS
Sbjct: 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE---HQILHNLRQWGEGRTVIIS 506
Query: 185 -HNLHMVMASTDTVICLNNRICYQGPPQTI 213
H L + +++ ++ + I +G +
Sbjct: 507 AHRLSALTEASEILVMQHGHIAQRGNHDQL 536
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 53.6 bits (129), Expect = 4e-08
Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 45/197 (22%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-------------IAKLITGII--------KPTI 64
++ I+ + N+I LIGP+GSGKST IA+ +TG I + I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR-VTGQILYRGIDINRKEI 94
Query: 65 G--SVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV-------- 114
+++H +G V Q+ N S+ +T ++ + ++LD +
Sbjct: 95 NVYEMRKH----IGMVFQR---PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA 147
Query: 115 ----NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
+ +++ LSGG+ QR +A+A+ KP++L++DEP +D + L E +
Sbjct: 148 ALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207
Query: 171 SVRQSTGCGILLISHNL 187
++++ I++++HN+
Sbjct: 208 ELKKNY--TIIIVTHNM 222
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 53.6 bits (129), Expect = 5e-08
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 45/208 (21%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP---TIGSVKRHPQLIVGYVPQKVTI 84
D+NF+++ E + ++G +GSGKS A + G++ GS + + I+ +P+K
Sbjct: 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN-LPEK--- 89
Query: 85 ENTLPLSLMRFMTLSM----------PSSR-----DDVLQILDRVNLIGKYNRNIKDL-- 127
L+ +R +SM P R +VL + ++ + +++ L
Sbjct: 90 ----ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDA 145
Query: 128 -----------------SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
SGG QR ++A ALL +P LL+ DEP +D + + L+
Sbjct: 146 VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLN 205
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVI 198
+++ I++I+H+L +V D V+
Sbjct: 206 ELKREFNTAIIMITHDLGVVAGICDKVL 233
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 53.4 bits (128), Expect = 5e-08
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 47/224 (20%)
Query: 8 TPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI----------- 56
P + N S + ++ ++ +N I + +IGP+G GKST + I
Sbjct: 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCH 96
Query: 57 -TG-----------------IIKPTIGSVKRHPQLI-------VGYVPQKVTIENTLPLS 91
TG +++ IG V + P + Y P+ I + L
Sbjct: 97 TTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLE 156
Query: 92 LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLD 151
+ +L + D+V LD+ N +G LSGG+ QR +A+ L +P +L+LD
Sbjct: 157 EIVEKSLRKAALWDEVSDRLDK-NALG--------LSGGQQQRLCVARTLAVEPEILLLD 207
Query: 152 EPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
EP +D + +LI +R S I++++HN+ +D
Sbjct: 208 EPTSALDPKATAKIEDLIQELRGSY--TIMIVTHNMQQASRVSD 249
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 53.0 bits (127), Expect = 7e-08
Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITG----- 58
I + N + + + IL+++N I N + LIGP+G GKST + LI G
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG 63
Query: 59 --------IIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSM----PSSRDD 106
I P + V+ + VG V QK N P S+ + + D
Sbjct: 64 HIYLDGVDIYDPAVDVVELRKK--VGMVFQK---PNPFPKSIFDNVAYGLRIHGEDDEDF 118
Query: 107 VLQILDRV--------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
+ + ++ + K +++ LSGG+ QR +A+ + P ++++DEP +D
Sbjct: 119 IEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
Query: 159 FPGELSLYELITSVRQSTGCGILLISHNLHMVM-ASTDTVICLNNRICYQGPPQTI---- 213
+ +LI +++ I++++HN+ S T LN I G I
Sbjct: 179 PISTTKIEDLIHKLKEDY--TIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
Query: 214 --KDNAEYI 220
K +YI
Sbjct: 237 KDKRTEDYI 245
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 52.5 bits (126), Expect = 1e-07
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 126 DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISH 185
+L+ GE Q+ ++A AL +P LL+ DEP ++ + ++ L+T + Q+ ILLISH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 186 NLHMV 190
+L M+
Sbjct: 218 DLQML 222
Score = 35.9 bits (83), Expect = 0.009
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61
K + ++ T+ EI L+G +GSGKS IAK I G+ K
Sbjct: 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 52.3 bits (125), Expect = 1e-07
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 115 NLIGKYNRNI----KDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT 170
+L KY+ N+ K LSGG+ QR +A+ALLR+P +L+LDE +D E + + I
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 171 SVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
++ I+ I+H + + S D ++ NN
Sbjct: 1403 DIKDKADKTIITIAHRIASIKRS-DKIVVFNN 1433
Score = 46.2 bits (109), Expect = 7e-06
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 123 NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILL 182
N LSGG+ QR +A+A++R P +L+LDE +D E + + I +++ + ++
Sbjct: 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635
Query: 183 ISHNLHMVMASTDTVICLNNR 203
I+H L + + +T+ L+NR
Sbjct: 636 IAHRLSTIRYA-NTIFVLSNR 655
Score = 44.6 bits (105), Expect = 2e-05
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 11 ISLSNTSFHKNGYK---ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV 67
I N FH + K I +D+NFT+ + +G +G GKSTI KLI + PT G +
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Score = 28.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI 56
I +D+ F+ + ++G GSGKST+ L+
Sbjct: 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 52.3 bits (125), Expect = 1e-07
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 36/216 (16%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI------------TG 58
+ L + H ++D++ N + +IGP+G GKST+ + I TG
Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64
Query: 59 II---KPTIGSVKRHPQLI---VGYVPQKVTIENTLPL-----SLMRFMTLSMPSSRDDV 107
I I P I VG V QK N P +++ L+ +R +
Sbjct: 65 KILLDDTDIYDRGVDPVSIRRRVGMVFQK---PNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 108 LQI----LDRVNLIGKYNRNIK----DLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
+I L RV L + +K +LSGG+ QR +A+ + KP ++++DEP +D
Sbjct: 122 DEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
L + ELI +++ I++++HN+ +D
Sbjct: 182 ISTLKIEELIEELKEKY--TIIIVTHNMQQAARVSD 215
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 52.3 bits (125), Expect = 1e-07
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 38/218 (17%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT----------- 57
P I + N + + L++++ I N + LIGP+G GKST + +
Sbjct: 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 58 ---------GIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLM-------RFMTLSMP 101
I +P + V+ VG V QK N P+S+ R +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKN--VGMVFQK---PNPFPMSIYDNVAYGPRIHGANKK 125
Query: 102 SSRDDVLQILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
V L L + + +K LSGG+ QR +A+ L KP +++ DEP +
Sbjct: 126 DLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
D + +LI ++++ I++++HN+ +D
Sbjct: 186 DPISTARIEDLIMNLKKDY--TIVIVTHNMQQAARISD 221
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 52.2 bits (125), Expect = 1e-07
Identities = 55/252 (21%), Positives = 101/252 (40%), Gaps = 42/252 (16%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
P+I + N S + K ++++ I N+I +IGP+G GK+T+ + I + I +
Sbjct: 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM-NDHIPGFR 60
Query: 69 RHPQLI-------------------VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQ 109
++ VG V QK T P+S+ +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT---PFPMSIYDNVAFGPRIHGVKSKH 117
Query: 110 ILDRV------------NLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGI 157
LDR+ + + N+ LSGG+ QR +A+AL +P +++LDEP +
Sbjct: 118 KLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSAL 177
Query: 158 DFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVICLNNRICYQGPPQTIKDNA 217
D + +L+ S I++++HN+ + D + + Y+G
Sbjct: 178 DPIATQRIEKLLE--ELSENYTIVIVTHNIGQAIRIADYIAFM-----YRGELIEYGPTR 230
Query: 218 EYIRLFGTRATE 229
E + + TE
Sbjct: 231 EIVERPKNKLTE 242
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 51.3 bits (123), Expect = 2e-07
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 43/220 (19%)
Query: 1 MSNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAK------ 54
S ++ N + + + ++++ I N+I IGP+G GKSTI +
Sbjct: 1 TSTLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60
Query: 55 -LITGIIKPTIGSVKRHPQLI-------------VGYVPQKVTIENTLPLSLMRFMT--- 97
LI G G V H + + +G V QK N P S+ +
Sbjct: 61 DLIPGF--RVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQK---PNPFPKSIYDNIAYGA 115
Query: 98 --LSMPSSRDDVLQ-------ILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148
D++++ + D V K ++ LSGG+ QR +A+A+ +P ++
Sbjct: 116 RINGYKGDMDELVERSLRQAALWDEVK--DKLKQSGLSLSGGQQQRLCIARAIAVQPEVI 173
Query: 149 VLDEPLQGIDFPGELSLYELI-TSVRQSTGCGILLISHNL 187
++DEP +D L + EL+ Q T I++++HN+
Sbjct: 174 LMDEPCSALDPISTLRIEELMHELKEQYT---IIIVTHNM 210
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 51.0 bits (122), Expect = 3e-07
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 38/194 (19%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAK-------LITGIIKPTIGSVK---------- 68
L+ IN I ++ LIGP+G GKST+ + LI G+ G +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV--KITGKLTMDGEDIYGNI 76
Query: 69 --RHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV---NLIG----- 118
++ VG V QK N P+S+ + + + ++LD V +L G
Sbjct: 77 DVADLRIKVGMVFQK---PNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 119 ----KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQ 174
+ + LSGG+ QR +A+ + +P+++++DEP +D + EL+ +++
Sbjct: 134 EVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
Query: 175 STGCGILLISHNLH 188
+ I++++H++
Sbjct: 194 NY--TIVIVTHSMQ 205
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 50.2 bits (120), Expect = 5e-07
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 32/225 (14%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK-----PTIGSVKRHPQLI----- 74
+++ ++ I N + L+GP+G GKST+ + +++ G V+ + I
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 75 --------VGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQ-ILDRVNLIGK 119
VG V Q +TI + + + + + D+ ++ L + L +
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE 138
Query: 120 YNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQS 175
+ D LSGG+ QR ++A+AL KP +L++DEP ID G + EL+ +++
Sbjct: 139 VKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE 198
Query: 176 TGCGILLISHNLHMVMASTDTVICLN-NRICYQGPPQTIKDNAEY 219
I+L++H+ +D V L ++ GP + + +N E+
Sbjct: 199 Y--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 50.2 bits (120), Expect = 5e-07
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 39/229 (17%)
Query: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV-------------------K 68
+ + I+ EI L+G +GSGKS++ + + G+ + GSV +
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLR 101
Query: 69 RHPQLIVGYVPQK------VTIENTLPLSL-MRFMTLSMPSSRDDVLQILDRVNLIGKYN 121
R V V QK +T+E + L M+ M R V + L+ V L +
Sbjct: 102 RLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGM--PEAERRKRVDEQLELVGLAQWAD 159
Query: 122 RNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID--FPGELS--LYELITSVRQSTG 177
+ +LSGG QR LA+A ++L++DEP +D +L L EL + ++
Sbjct: 160 KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKT-- 217
Query: 178 CGILLISHNLHMVMA-STDTVICLNNRICYQGPPQTI--KDNAEYIRLF 223
I+ +SH+L + I RI G P+ I +Y+ F
Sbjct: 218 --IIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 50.2 bits (120), Expect = 5e-07
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 31/203 (15%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV--KRHPQLIVGYVPQK 81
+L+D++ ++ ++ ++G GSGKST+ + + + + G V +R + YVPQ+
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS----IAYVPQQ 729
Query: 82 VTIENTLPLSLMRFMTLSMPSSRDDVLQI----LDRVNLIGKYNRNIKD----LSGGEFQ 133
I N + F + D +++ D L G I + LSGG+
Sbjct: 730 AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKA 789
Query: 134 RALLAKALLRKPNLLVLDEPLQGID-FPGELSLYELITSVRQSTGCGIL------LISHN 186
R LA+A+ ++ +LD+PL +D GE + E G L L +H
Sbjct: 790 RVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF--------LGALAGKTRVLATHQ 841
Query: 187 LHMVMASTDTVICL-NNRICYQG 208
+H+V D V+ L + R+ + G
Sbjct: 842 VHVV-PRADYVVALGDGRVEFSG 863
Score = 35.1 bits (81), Expect = 0.014
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 53/213 (24%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGY------- 77
+L+ ++F I P E V ++G GSGKST+ +++ G ++ + + I Y
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 78 ----VPQK-VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNL---IGKYNRNIKD--L 127
+PQ V + T+ ++ F+ +S +V L+ V L + + I L
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLE----ASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 128 SGGEF----QRAL--LAKALLRKPNLLVL-DEPLQGIDFPG-----------ELSLYELI 169
GG QR L +A+ALL+K + +L DE ID P S Y +I
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID-PALDRQIQATVMSAFSAYTVI 1499
Query: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLNN 202
T I+H LH V A D +I +++
Sbjct: 1500 T------------IAHRLHTV-AQYDKIIVMDH 1519
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 50.0 bits (119), Expect = 6e-07
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV------------KRHPQL 73
L I+ I +IV ++G NG GKST+AKL G+ P G + + L
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417
Query: 74 IVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQ 133
++ + +L L+I D+V + LS G+ +
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
R L A L +L+ DE D + YE + + G I++ISH+
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 49.6 bits (119), Expect = 7e-07
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 127 LSGGEFQRALLAKALLRK---PNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLI 183
LSGGE QR LAK L ++ L +LDEP G+ F L E++ + G +++I
Sbjct: 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLV-DQGNTVVVI 887
Query: 184 SHNLHMVMASTDTVICL 200
HNL V+ + D +I L
Sbjct: 888 EHNLD-VIKTADYIIDL 903
Score = 34.2 bits (79), Expect = 0.027
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53
L++I+ I +++V + G +GSGKS++A
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSLA 39
Score = 30.8 bits (70), Expect = 0.34
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
L++I +I + G +GSGKST LI + P
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKST---LINDTLYPA 657
Score = 28.8 bits (65), Expect = 1.2
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 111 LDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEP 153
LD + L +R LSGGE QR LA + L VLDEP
Sbjct: 476 LDYLTL----SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 516
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 49.4 bits (118), Expect = 8e-07
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186
LSGG QR ++A A+ +P LL+ DEP +D + + EL+ ++Q ++LI+H+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 187 LHMVMASTDTVI 198
L +V + +I
Sbjct: 214 LALVAEAAHKII 225
Score = 30.5 bits (69), Expect = 0.36
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 10 LISLSNTSFH----KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGII 60
L+++ S H ++ + I++++K E+V ++G +GSGKS + I G+I
Sbjct: 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 49.0 bits (117), Expect = 1e-06
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 31/178 (17%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK 68
+I + + + L D++ I N++ +IGP+G GKST + I + I + +
Sbjct: 38 TVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINR-MNDLIDAAR 96
Query: 69 RHPQLIVGYVPQKVTIENTLPLSLMRF--MTLSMP-----SSRDDV---LQILDR-VNLI 117
+L + V + P++L R M P S D+V L+I ++
Sbjct: 97 VEGELTFR--GKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154
Query: 118 GKYNRNIK-----------------DLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
+ +++ DLSGG+ QR +A+A+ P ++++DEP +D
Sbjct: 155 ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 48.2 bits (114), Expect = 2e-06
Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 35/235 (14%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG--- 65
P ++ N + G +L ++ + +L+GP GSGK+T + + + G
Sbjct: 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY 79
Query: 66 ---------SVKRHPQLI-----VGYVPQKVTIENTLPLSLM-------RFMTLSMPSSR 104
S+ + ++ VG + Q+ N P+S+M R L
Sbjct: 80 SGDVLLGGRSIFNYRDVLEFRRRVGMLFQR---PNPFPMSIMDNVLAGVRAHKLVPRKEF 136
Query: 105 DDVLQI-LDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDF 159
V Q L V L + D LSGG+ Q LA+ L P +L+LDEP +D
Sbjct: 137 RGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196
Query: 160 PGELSLYELITSVRQSTGCGILLISHNLHMVMASTD-TVICLNNRICYQGPPQTI 213
+ E I S+ + +++++HNL +D + + R+ +GP + +
Sbjct: 197 TTTEKIEEFIRSL--ADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 48.2 bits (115), Expect = 2e-06
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 30/200 (15%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVK-----------RHPQL 73
+L ++F I P+E V ++G G+GKS++ + I++ G + +
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 74 IVGYVPQK-VTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL----- 127
++G +PQ V T+ +L F + D+ + L+R +L RN L
Sbjct: 1314 VLGIIPQAPVLFSGTVRFNLDPFNE----HNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 128 SGGE-F---QRALL--AKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGIL 181
GE F QR LL A+ALLR+ +LVLDE +D + + + I +S C +L
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTML 1427
Query: 182 LISHNLHMVMASTDTVICLN 201
+I+H L+ ++ D ++ L+
Sbjct: 1428 IIAHRLNTIIDC-DRILVLD 1446
Score = 47.4 bits (113), Expect = 3e-06
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 9 PLISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
P IS+ N F K L +IN + +V ++G G GK+++ + G + P
Sbjct: 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSD 672
Query: 66 S--VKRHPQLIVGYVPQKVTIENT---------LPLSLMRFMTLSMPSSRDDVLQILDRV 114
+ V R V YVPQ I N P R+ ++ L +L
Sbjct: 673 ASVVIRGT---VAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGG 729
Query: 115 NL--IGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
+L IG+ NI SGG+ QR +A+A+ ++ + D+PL +D
Sbjct: 730 DLTEIGERGVNI---SGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 48.1 bits (114), Expect = 2e-06
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 36/164 (21%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMR 94
P E++ ++GP GSGK+T+A+ + + P G V
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY------------------------- 35
Query: 95 FMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPL 154
+ ++VL L + SG R LA A KP++L+LDE
Sbjct: 36 ---IDGEDILEEVLDQLLLI----IVGGKKASGSGELRLRLALALARKLKPDVLILDEIT 88
Query: 155 QGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTDTVI 198
+D E L L + +L NL +++ + D
Sbjct: 89 SLLDAEQEALLLLLE----ELRLLLLLKSEKNLTVILTTNDEKD 128
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 47.8 bits (114), Expect = 2e-06
Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 7 ITPLISLSNTS-FHKNG---YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKP 62
+T L+ L + + +G ++L+ I+ I E+V ++G +GSGKST+ ++ + KP
Sbjct: 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP 60
Query: 63 TIGSVKRHPQLIV---------------GYVPQK------VTIENTLPLSLMRFMTLSMP 101
T G+ + Q + G++ Q+ +T + + + + L
Sbjct: 61 TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAV-YAGLERK 119
Query: 102 SSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID-FP 160
++L R+ L + LSGG+ QR +A+AL+ +++ DEP +D
Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 161 GELSLYELITSVRQ--STGCGILLISHNLHMVMASTDTVI 198
GE E++ + Q G +++++H+ V A + VI
Sbjct: 180 GE----EVMAILHQLRDRGHTVIIVTHDPQ-VAAQAERVI 214
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 47.0 bits (112), Expect = 4e-06
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 54/202 (26%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKST-------------IAKLITGII--------KPTI 64
L D++ I + IGP+G GKST + +TG I P +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR-VTGKITLDGEDIYDPRL 93
Query: 65 GSVKRHPQLIVGYVPQKVTIENTLPLSLM-------RFMTLSMPSSRDDVLQI----LDR 113
V+ + VG V QK N P S+ R L+ S+ ++ +I L +
Sbjct: 94 DVVELRAR--VGMVFQK---PNPFPKSIYENVAYGPRIHGLA--RSKAELDEIVETSLRK 146
Query: 114 VNLIGKYNRNIKD--------LSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSL 165
L + +KD LSGG+ QR +A+A+ P ++++DEP +D +
Sbjct: 147 AGLWEE----VKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
Query: 166 YELITSVRQSTGCGILLISHNL 187
ELI +RQ+ I++++H++
Sbjct: 203 EELIDELRQNY--TIVIVTHSM 222
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 46.8 bits (111), Expect = 4e-06
Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 47/221 (21%)
Query: 9 PLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTI------------AKLI 56
+S+ + + L+ ++ I + LIGP+G GKST A I
Sbjct: 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103
Query: 57 TGII-----------------KPTIGSVKRHPQLI-------VGYVPQKV-TIENTLPLS 91
G + + +G V + P + Y P+K I L
Sbjct: 104 DGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGL--- 160
Query: 92 LMRFMTLSMPSSRDDVLQ-ILDRVNLIGKYNRNIKD----LSGGEFQRALLAKALLRKPN 146
L R + + D++++ L + L + N + D LSGG+ QR +A+ L P
Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220
Query: 147 LLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNL 187
++++DEP +D + +LI + + +++++HN+
Sbjct: 221 VILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTHNM 259
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 46.9 bits (111), Expect = 5e-06
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 8 TPLISLSNTSFH---KNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPT- 63
P IS+ N F K L DIN I +V ++G G GK+++ + G +
Sbjct: 612 APAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE 671
Query: 64 ------IGSVKRHPQLIVGYVPQKVTIENTL------PLSLMRFMTLSMPSSRDDVLQIL 111
GSV PQ V ++ EN L R + ++ D+L
Sbjct: 672 TSSVVIRGSVAYVPQ--VSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGR 729
Query: 112 DRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
D IG+ NI SGG+ QR +A+A+ ++ + D+PL +D
Sbjct: 730 DLTE-IGERGVNI---SGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
Score = 45.0 bits (106), Expect = 2e-05
Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 33/224 (14%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84
+L ++F + P+E V ++G G+GKS++ + I++ G + +I K +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI-----MIDDCDVAKFGL 1305
Query: 85 EN------TLPLS------LMRFMTLSMPSSRD-DVLQILDRVNLIGKYNRNIKDL---- 127
+ +P S +RF D D+ + L+R ++ +RN L
Sbjct: 1306 TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365
Query: 128 -SGGEF----QRAL--LAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
GGE QR L LA+ALLR+ +LVLDE +D + + I +S C +
Sbjct: 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS--CTM 1423
Query: 181 LLISHNLHMVMASTDTVICLNNRICYQGPPQTI--KDNAEYIRL 222
L+I+H L+ ++ ++ + ++ PQ + +D + + R+
Sbjct: 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRM 1467
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 46.4 bits (110), Expect = 6e-06
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 122 RNIKDLSGGEFQRALLAKALL---RKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
R + LSGGE QR LA LL +KP L VLDEP G+ +L ++ S+ G
Sbjct: 805 RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GH 863
Query: 179 GILLISHNLHMVMASTDTVICL 200
+++I HN+H+V + D V+ L
Sbjct: 864 TVVIIEHNMHVVKVA-DYVLEL 884
Score = 33.3 bits (76), Expect = 0.057
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 121 NRNIKDLSGGEFQRALLAKALLRKPN--LLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
R + LSGGE +R LAK L + +LDEP G+ L +I +R G
Sbjct: 471 ERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQ-GN 529
Query: 179 GILLISHNLHMVMASTDTVICLNNRICYQGP 209
+LL+ H+ M I L +RI GP
Sbjct: 530 TVLLVEHDEQM--------ISLADRIIDIGP 552
Score = 30.6 bits (69), Expect = 0.40
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53
L++I+ P EIV L G +GSGKS++A
Sbjct: 16 LKNISIEFCPREIVLLTGVSGSGKSSLA 43
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 45.6 bits (108), Expect = 1e-05
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58
++S+ + IL+ +N ++P E+ ++GPNGSGKST++ + G
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 45.6 bits (108), Expect = 1e-05
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 47/227 (20%)
Query: 5 LSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKL--------- 55
+++ ++S N + L DI +I N + LIGP+G GKST+ +
Sbjct: 1 MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60
Query: 56 ---ITG-----------------IIKPTIGSVKRHPQLI-------VGYVPQKVTIENTL 88
ITG ++ IG V + P V Y P+ +N
Sbjct: 61 GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKK 120
Query: 89 PLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLL 148
L + +L + D+V DR+ + + LSGG+ QR +A+ L P ++
Sbjct: 121 TLDTIVEKSLKGAALWDEV---KDRL------HDSALSLSGGQQQRLCIARTLAVNPEVI 171
Query: 149 VLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHNLHMVMASTD 195
++DEP +D + +LI +++ +++++HN+ +D
Sbjct: 172 LMDEPCSALDPIATAKIEDLIEDLKKEY--TVIIVTHNMQQAARVSD 216
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 44.1 bits (104), Expect = 3e-05
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 17/187 (9%)
Query: 10 LISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKR 69
++SL F+ K L D++ T P+ I + G NG GKS++ ++I GI++P+ G++
Sbjct: 1 MLSLHQLQFNIEQ-KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59
Query: 70 H-------PQLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRV----NLIG 118
+ Y+ + L L + F L S + + L L
Sbjct: 60 KNCNINNIAKPYCTYIGHNL----GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD 115
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
+ LS G + +A+ + + +L +LDE + L LI ++ ++G
Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV-MKANSGG 174
Query: 179 GILLISH 185
+LL SH
Sbjct: 175 IVLLSSH 181
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 42.8 bits (101), Expect = 7e-05
Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 45/195 (23%)
Query: 19 HKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSV----------- 67
+ IL+ ++ IKP E+ ++G GSG ST+ K I V
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITP 129
Query: 68 ---KRHPQLIVGY-------VPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLI 117
K+H + V Y P +T+ TL + P +R D + + I
Sbjct: 130 EEIKKHYRGDVVYNAETDVHFPH-LTVGETLDFA----ARCKTPQNRPDGVSREEYAKHI 184
Query: 118 GKY----------------NRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPG 161
N ++ +SGGE +R +A+A L + D +G+D
Sbjct: 185 ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD--- 241
Query: 162 ELSLYELITSVRQST 176
+ E I +++ S
Sbjct: 242 SATALEFIRALKTSA 256
Score = 40.9 bits (96), Expect = 3e-04
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTI-----AKLITGIIKPTIGSVKRHP-----QLI 74
IL +++ +KP + L+G +G+GK+T+ ++ TG+I V P Q
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837
Query: 75 VGYVPQK------VTIENTLPLS--LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD 126
+GYV Q+ T+ +L S L + ++S + V +++ + + Y +
Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-ESYADAVVG 896
Query: 127 LSGG-----EFQRALLAKALLRKPNLLV-LDEPLQGID 158
+ G + +R + L+ KP LL+ LDEP G+D
Sbjct: 897 VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 39.8 bits (93), Expect = 6e-04
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT-----GIIKPTI---GSVKRHPQL-- 73
++L+++ +P + L+G +G+GK+T+ ++ G I+ I G K+
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 953
Query: 74 IVGYVPQ------KVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD- 126
I GY Q +VT+ +L S F+ L S+++ + +D V + + + N+KD
Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYS--AFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDA 1010
Query: 127 ---------LSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
LS + +R +A L+ P+++ +DEP G+D
Sbjct: 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Score = 36.4 bits (84), Expect = 0.006
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI---GSVKRHPQLIVGYVPQK 81
IL+D + IKP+ + L+GP SGK+T+ + G + P++ G + + + +VP+K
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 82 VT 83
+
Sbjct: 240 TS 241
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 37.7 bits (89), Expect = 0.002
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 127 LSGGEFQRALLAKALLRKPN---LLVLDEPLQGIDF 159
LSGGE QR LAK L ++ L +LDEP G+ F
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHF 866
Score = 29.3 bits (67), Expect = 0.86
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53
L++I+ I +++V G +GSGKS++A
Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSSLA 43
Score = 26.2 bits (59), Expect = 8.2
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
L++++ I + + G +GSGKST LI + +
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKST---LINETLYKAL 660
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 269
Score = 37.1 bits (86), Expect = 0.004
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 6 SITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI 56
S +ISL N + ++ ++++ I ++ LIGP+G GKST+ + +
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
Score = 37.1 bits (86), Expect = 0.004
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 119 KYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGC 178
K N + LSGG+ QR +A+ + +P ++++DEP +D L + E + ++++
Sbjct: 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF-- 204
Query: 179 GILLISHNLHMVMASTD 195
I++++HN+ + +D
Sbjct: 205 TIVIVTHNMQQAVRVSD 221
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 37.1 bits (87), Expect = 0.004
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG 58
++++ I+ + E + L+GP+G GKST+ +++ G
Sbjct: 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52
Score = 34.4 bits (80), Expect = 0.025
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 127 LSGGEFQRALLAKALLRKPNLLVLDEPLQGID 158
LSGG+ QR + +A++R+P + + DEPL +D
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 34.3 bits (80), Expect = 0.026
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
++ + GP GSGK T+AK++
Sbjct: 6 VIAIDGPAGSGKGTVAKIL 24
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. This
family represents the SMC protein of most bacteria. The
smc gene is often associated with scpB (TIGR00281) and
scpA genes, where scp stands for segregation and
condensation protein. SMC was shown (in Caulobacter
crescentus) to be induced early in S phase but present
and bound to DNA throughout the cell cycle.
Length = 1179
Score = 34.3 bits (79), Expect = 0.032
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTI 52
INF I ++GPNG GKS I
Sbjct: 19 INF---DKGITGIVGPNGCGKSNI 39
Score = 32.0 bits (73), Expect = 0.13
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 118 GKYNRNIKDLSGGEFQRALLAKALL-----RKPN-LLVLDE 152
GK N+N+ LSGGE +AL A ALL KP +LDE
Sbjct: 1081 GKKNQNLSLLSGGE--KALTALALLFAIFKVKPAPFCILDE 1119
>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. E. coli NadR has also
been found to regulate the import of its substrate,
nicotinamide ribonucleotide, but it is not known if the
other members of this model share that activity.
Length = 325
Score = 33.3 bits (76), Expect = 0.061
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 ISLSNTSFHKNGYKILQDINFTIKPN--EIVTLIGPNGSGKSTIAKLITGIIKPT 63
S+S T +N ++ + I ++P + V ++G +GKST+ + + T
Sbjct: 135 FSVSATQIRENPFQHWKHIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTT 189
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 32.6 bits (74), Expect = 0.089
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 124 IKDLSGGEFQ------RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELIT-SVRQST 176
I LSGGE R +A+ L +LL++DEP +D +L ++I S++ S+
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
Query: 177 GC-GILLISHNLHMVMAS 193
+++ISH+ ++ +
Sbjct: 859 DIPQVIMISHHRELLSVA 876
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 32.1 bits (74), Expect = 0.12
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 39 VTLIGPNGSGKSTIAKL 55
+ LIG G+GKSTI +L
Sbjct: 7 IVLIGFMGAGKSTIGRL 23
>gnl|CDD|161849 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit
(clpX). A member of the ATP-dependent proteases, ClpX
has ATP-dependent chaperone activity and is required for
specific ATP-dependent proteolytic activities expressed
by ClpPX. The gene is also found to be involved in
stress tolerance in Bacillus subtilis and is essential
for the efficient acquisition of genes specifying type
IA and IB restriction.
Length = 413
Score = 31.7 bits (72), Expect = 0.18
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTL 98
+ LIGP GSGK+ +A+ + I+ GYV + V EN L L L++
Sbjct: 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDV--ENIL-LKLLQAADY 175
Query: 99 SMPSSRDDVLQILDRVNLIGKYNRNI---KDLSGGEFQRALL 137
+ ++ ++ I D ++ I + + N +D+SG Q+ALL
Sbjct: 176 DVEKAQKGIIYI-DEIDKISRKSENPSITRDVSGEGVQQALL 216
>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF.
Length = 282
Score = 31.5 bits (72), Expect = 0.19
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 38 IVTLIGPNGSGKST-IAKL 55
++ L+GP G GK+T +AKL
Sbjct: 196 VIALVGPTGVGKTTTLAKL 214
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 31.3 bits (72), Expect = 0.25
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+T+ GP GSGK+T+A+L+
Sbjct: 2 IITISGPPGSGKTTVARLL 20
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 30.9 bits (70), Expect = 0.28
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+T+ GP GSGK+T+AK++
Sbjct: 2 IITISGPPGSGKTTVAKIL 20
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 30.5 bits (69), Expect = 0.36
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 38 IVTLI-GPNGSGKSTIAKLITGI 59
I LI G +GSGK+T+A +
Sbjct: 16 ITVLIDGRSGSGKTTLAGALAAR 38
>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 30.2 bits (69), Expect = 0.48
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 33 IKPNEIVTLIGPNGSGKST-IAKL 55
+K +V L+GP G GK+T +AKL
Sbjct: 218 LKQGGVVALVGPTGVGKTTTLAKL 241
>gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason.
Length = 210
Score = 29.9 bits (68), Expect = 0.60
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 39 VTLIGPNGSGKSTIAKLIT 57
+ L+GP GSGK T AK I
Sbjct: 2 LVLLGPPGSGKGTQAKRIA 20
>gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 29.5 bits (67), Expect = 0.72
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 43 GPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLSMPS 102
GP G GK+T+ I ++ K + G+ ++V + F + + +
Sbjct: 7 GPPGVGKTTLVLKIAELL-------KEEGYKVGGFYTEEVREGGK----RIGFKIIDLDT 55
Query: 103 SRDDVLQILDRVN--LIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDE 152
+ +L + + +GKY N++DL L +A L + +++++DE
Sbjct: 56 GEEGILARVGFPSRPRVGKYVVNLEDLE--RIGIPALERA-LEEADVIIIDE 104
>gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 655
Score = 29.6 bits (67), Expect = 0.73
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 39 VTLIGPNGSGKS-TIAKLITGIIKPTI 64
TL+G GSGK+ T+A +I + +PT+
Sbjct: 32 QTLLGVTGSGKTFTMANVIAQVNRPTL 58
>gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 29.6 bits (67), Expect = 0.74
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 23 YKILQDINFTIKPNEIVTLIGPNGSGKST-IAKL 55
+ ++++I KP IV +G NG+GK+T IAKL
Sbjct: 128 FDLIEEIKSKGKPVVIV-FVGVNGTGKTTTIAKL 160
>gnl|CDD|179887 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 29.5 bits (67), Expect = 0.77
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 36 NEIVTLIGPNGSGKST-IAKLITGII 60
+ TL G NG+GKST +A +T +I
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALI 52
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 29.6 bits (67), Expect = 0.81
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 39 VTLIGPNGSGKSTIAK 54
+ LIG GSGKST+A+
Sbjct: 4 IILIGSGGSGKSTLAR 19
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 29.5 bits (67), Expect = 0.83
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 38 IVTLIGPNGSGKSTIA 53
IV + GP G+GKST+A
Sbjct: 35 IVGIAGPPGAGKSTLA 50
>gnl|CDD|172375 PRK13851, PRK13851, type IV secretion system protein VirB11;
Provisional.
Length = 344
Score = 29.5 bits (66), Expect = 0.84
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 41 LIGPNGSGKSTIAK-LITGI--------IKPTIGSVKRHPQLIV------GYVPQKVTIE 85
L GP GSGK+T++K LI+ I I+ T+ V H + G VT E
Sbjct: 167 LCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAE 226
Query: 86 NTLPLSL-MRFMTLSMPSSRDD 106
+ L SL MR + + RDD
Sbjct: 227 HLLQASLRMRPDRILLGEMRDD 248
>gnl|CDD|178665 PLN03118, PLN03118, Rab family protein; Provisional.
Length = 211
Score = 29.3 bits (65), Expect = 0.88
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 13 LSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGI------IKPTIGS 66
+ ++S +GY D++F I LIG +G GKS++ L++ I + PTIG
Sbjct: 1 MGSSSGQSSGY----DLSFKI------LLIGDSGVGKSSL--LVSFISSSVEDLAPTIGV 48
Query: 67 VKRHPQLIVGYVPQKVTIENTLPLSLMRFMTLS 99
+ QL VG K+TI +T R +T S
Sbjct: 49 DFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSS 81
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 29.1 bits (66), Expect = 1.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+ + GP G+GKST+ + +
Sbjct: 286 IIAIDGPAGAGKSTVTRAV 304
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain.
Length = 499
Score = 29.0 bits (65), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 41 LIGPNGSGKSTIAKLITGIIKP 62
L GP GSGK+ +A + GI+ P
Sbjct: 216 LFGPPGSGKTMLASRLQGILPP 237
>gnl|CDD|162859 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit. A number of
genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 28.9 bits (65), Expect = 1.1
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 29/125 (23%)
Query: 39 VTLIGPNGSGKSTIAKLITGIIKPTIGSVK--------RHPQLIVGYVPQKVTIENTLPL 90
V + G G+ KST A+ + ++ P I V P+ +K P
Sbjct: 28 VLIRGEKGTAKSTAARGLAALL-PPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRP- 85
Query: 91 SLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKD-LSGGE--FQRALLAKALLRKPNL 147
+ F+ L + ++ D V+ LD I+ L GE FQ LLA+A +
Sbjct: 86 --VPFVNLPLGATEDRVVGSLD-----------IERALREGEKAFQPGLLAEA---HRGI 129
Query: 148 LVLDE 152
L +DE
Sbjct: 130 LYIDE 134
>gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 28.9 bits (66), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 34 KPNEIVTLIGPNGSGK-STIAKL 55
KP ++ ++G NG GK +TI KL
Sbjct: 113 KPF-VILVVGVNGVGKTTTIGKL 134
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 29.1 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLI 56
++L+ + + KP++ + LIGP GSGK T + +I
Sbjct: 19 ELLRRMKCSSKPDKRLILIGPPGSGKGTQSPII 51
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance
of chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. It is
found in a single copy and is homodimeric in
prokaryotes, but six paralogs (excluded from this
family) are found in eukarotes, where SMC proteins are
heterodimeric. This family represents the SMC protein
of archaea and a few bacteria (Aquifex, Synechocystis,
etc); the SMC of other bacteria is described by
TIGR02168. The N- and C-terminal domains of this
protein are well conserved, but the central hinge
region is skewed in composition and highly divergent.
Length = 1164
Score = 28.9 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTI 52
I F+ + GPNGSGKS I
Sbjct: 19 IPFS---KGFTVISGPNGSGKSNI 39
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors.
Length = 217
Score = 28.5 bits (64), Expect = 1.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+ + GP+G+GKST+AK +
Sbjct: 4 IIAIDGPSGAGKSTVAKAV 22
>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 28.8 bits (64), Expect = 1.4
Identities = 11/19 (57%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Query: 38 IVTLIGPNGSGK-STIAKL 55
++ L+GP G+GK +TIAKL
Sbjct: 352 VIALVGPTGAGKTTTIAKL 370
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 28.7 bits (65), Expect = 1.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 33 IKPNEIVTLIGPNGSGKSTIA 53
+ + V L+G +G GKST+
Sbjct: 192 LSGGKTVALLGSSGVGKSTLV 212
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1042
Score = 28.4 bits (63), Expect = 1.8
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 21 NGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLIT 57
YK I+FT I + G G+GK+T+ IT
Sbjct: 12 GSYKGTHTIDFTALGP-IFLICGKTGAGKTTLLDAIT 47
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 28.5 bits (65), Expect = 1.8
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 43 GPNGSGKSTIAKLI 56
GP G+GK+T+A++I
Sbjct: 43 GPPGTGKTTLARII 56
>gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU,
while the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop
ATP-binding motif. Cys-287 of E. coli (position 308 in
the seed alignment), studied in PubMed:98389714, is Ser
in other members of the seed alignment.
Length = 441
Score = 28.2 bits (63), Expect = 1.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
+ P I+ +IGP G GK+ IA+ + + V+ VGYV + V
Sbjct: 45 VTPKNIL-MIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 28.1 bits (62), Expect = 1.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIG 65
+L +F + +E + ++ GSGK+T+ +L+ G+ P G
Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42
>gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed.
Length = 172
Score = 28.1 bits (63), Expect = 2.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 41 LIGPNGSGKSTIAK 54
L+GP G+GKSTI +
Sbjct: 9 LVGPMGAGKSTIGR 22
>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
Length = 506
Score = 28.0 bits (62), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 41 LIGPNGSGKSTIAKLITGIIKP 62
LIGP G+GK+ +A I G++
Sbjct: 215 LIGPPGTGKTMLASRINGLLPD 236
>gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 28.1 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 32 TIKPNEIVTLI--GPNGSGKSTIAKLI 56
IK + + +LI GP G GK+T+A++I
Sbjct: 46 AIKADRVGSLILYGPPGVGKTTLARII 72
>gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional.
Length = 818
Score = 27.9 bits (62), Expect = 2.4
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 40 TLI-GPNGSGKSTIAKLI 56
TLI GP GSGKST+ LI
Sbjct: 459 TLIFGPTGSGKSTLLALI 476
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 28.0 bits (62), Expect = 2.4
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 37 EIVTLIGPNGSGKST-IAKL 55
++V +GP GSGK+T IAKL
Sbjct: 224 KVVFFVGPTGSGKTTSIAKL 243
>gnl|CDD|162266 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH.
Length = 495
Score = 27.6 bits (62), Expect = 2.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 39 VTLIGPNGSGKSTIAKLITG 58
V L+GP G+GK+ +AK + G
Sbjct: 91 VLLVGPPGTGKTLLAKAVAG 110
>gnl|CDD|162629 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This
model represents HrpA, one of two related but
uncharacterized DEAH-box ATP-dependent helicases in
many Proteobacteria and a few high-GC Gram-positive
bacteria. HrpA is about 1300 amino acids long, while
its paralog HrpB, also uncharacterized, is about 800
amino acids long. Related characterized eukarotic
proteins are RNA helicases associated with pre-mRNA
processing.
Length = 1283
Score = 27.8 bits (62), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKST 51
+DI I N++V + G GSGK+T
Sbjct: 73 EDIAEAIAENQVVIIAGETGSGKTT 97
>gnl|CDD|184726 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 27.8 bits (62), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 32 TIKPNEIVTLIGPNGSGKSTIAK 54
T N++V +GP G+GK T A+
Sbjct: 2 TQTKNKVVIFLGPPGAGKGTQAE 24
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 27.6 bits (62), Expect = 3.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+ L+GP G GKS++ + +
Sbjct: 80 ILYLLGPVGGGKSSLVECL 98
>gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 27.4 bits (62), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 41 LIGPNGSGKSTIAKLIT 57
L+GP G+GK T AK I
Sbjct: 5 LLGPPGAGKGTQAKFIA 21
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 27.5 bits (61), Expect = 3.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 39 VTLIGPNGSGKSTIAKLITG 58
+ +GP GSGK TIAK+++
Sbjct: 3 LVFLGPPGSGKGTIAKILSN 22
>gnl|CDD|179638 PRK03731, aroL, shikimate kinase II; Reviewed.
Length = 171
Score = 27.6 bits (62), Expect = 3.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 36 NEIVTLIGPNGSGKSTIAKL 55
+ + L+G G GK+T+
Sbjct: 2 TQPLFLVGARGCGKTTVGMA 21
>gnl|CDD|179089 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 27.5 bits (62), Expect = 3.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 39 VTLIGPNGSGKSTIAKLI 56
+T+ G +G+GKST +L+
Sbjct: 6 ITIEGIDGAGKSTQIELL 23
>gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated.
Length = 226
Score = 27.3 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 35 PNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI 74
P+ +V L GP GSGK+ +A I + ++ HP I
Sbjct: 43 PSPVVVLAGPVGSGKTHLA----SIWREKSDALLIHPNEI 78
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.3 bits (61), Expect = 3.7
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 29 INFTIKPNEIVTLIGPNGSGKSTI 52
+ F N I IG NGSGKS+I
Sbjct: 19 VEFDDGINLI---IGQNGSGKSSI 39
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.4 bits (61), Expect = 3.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAK 54
IKP + V L GP G+GK+ +AK
Sbjct: 214 IKPPKGVILYGPPGTGKTLLAK 235
>gnl|CDD|162351 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation.
Length = 343
Score = 27.3 bits (61), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 34 KPNEIVTLIGPNGSGKST-IAKLI 56
+P ++ + GP GSGKST +A +I
Sbjct: 120 RPRGLILVTGPTGSGKSTTLASMI 143
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 27.4 bits (61), Expect = 3.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 39 VTLIGPNGSGKSTIAKLI 56
+ +IG +GSGKST+A+ +
Sbjct: 3 IAIIGYSGSGKSTLARKL 20
>gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal
protein S1; Provisional.
Length = 863
Score = 27.0 bits (59), Expect = 4.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
I+ L GP GSGKS++ +L+
Sbjct: 36 IIALDGPAGSGKSSVCRLL 54
>gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 27.3 bits (61), Expect = 4.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 14/53 (26%)
Query: 3 NALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIV--TLI-GPNGSGKSTI 52
AL++ L + S T F NF ++ +++ TLI GP GSGK+T+
Sbjct: 409 PALTL--LKTQSGTPF---------YFNFHVRDAKVLGHTLIFGPTGSGKTTL 450
>gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 27.1 bits (61), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 38 IVTLIGPNGSGKSTIAK 54
IV +G GSGK+T+ K
Sbjct: 4 IVFFLGTAGSGKTTLTK 20
>gnl|CDD|162133 TIGR00959, ffh, signal recognition particle protein. This model
represents Ffh (Fifty-Four Homolog), the protein
component that forms the bacterial (and organellar)
signal recognition particle together with a 4.5S RNA.
Ffh is a GTPase homologous to eukaryotic SRP54 and also
to the GTPase FtsY (TIGR00064) that is the receptor for
the signal recognition particle.
Length = 428
Score = 27.3 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKL 55
+N KP ++ ++G GSGK+T KL
Sbjct: 90 ASLNLAKKPPTVILMVGLQGSGKTTTCGKL 119
>gnl|CDD|128571 smart00275, G_alpha, G protein alpha subunit. Subunit of G
proteins that contains the guanine nucleotide binding
site.
Length = 342
Score = 27.2 bits (61), Expect = 4.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 41 LIGPNGSGKSTIAK 54
L+G SGKSTI K
Sbjct: 26 LLGAGESGKSTILK 39
>gnl|CDD|163401 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity.
Length = 512
Score = 27.0 bits (60), Expect = 4.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 31 FTIKPNEIVTLIGPNGSGKSTIAK 54
+ +KP + V L GP G GK+ IAK
Sbjct: 211 YDLKPPKGVLLYGPPGCGKTLIAK 234
>gnl|CDD|161686 TIGR00064, ftsY, signal recognition particle-docking protein
FtsY. There is a weak division between FtsY and SRP54;
both are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein.
Length = 272
Score = 27.2 bits (61), Expect = 4.4
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 34 KPNEIVTLIGPNGSGK-STIAKL 55
KPN I+ +G NG GK +TIAKL
Sbjct: 71 KPNVIL-FVGVNGVGKTTTIAKL 92
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 139
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 39 VTLIGPNGSGKSTIAKLITGII 60
V L+GP G+GKS +A+ + +
Sbjct: 2 VLLVGPPGTGKSELAERLAAAL 23
>gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD.
This model describes the DndB protein encoded by an
operon associated with a sulfur-containing modification
to DNA. The operon is sporadically distributed in
bacteria, much like some restriction enzyme operons.
DndD is described as a putative ATPase. The small
number of examples known so far include species from
among the Firmicutes, Actinomycetes, Proteobacteria,
and Cyanobacteria.
Length = 650
Score = 27.0 bits (60), Expect = 4.5
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 27 QDINFTIKPNEIVTLIGP-NGSGKST 51
Q + + + + LIG NG+GK+T
Sbjct: 18 QTFDLSPSSPKPIILIGGLNGAGKTT 43
>gnl|CDD|182188 PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional.
Length = 258
Score = 26.8 bits (59), Expect = 4.6
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 138 AKALLRKPNLLVLDEPLQGIDFPG-ELSLYELITSVRQSTGCGILLISHNL-HMVMAS-- 193
A +L K ++L+L EP+ D PG L+ + GC L I +++ HM
Sbjct: 129 AANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLIDDVGCCNLKIQYDIYHMQRMEGE 188
Query: 194 -TDTVICLNNRICY--------QGPPQTIKDNAEYI 220
T+T+ ++I + +G P T + N +Y+
Sbjct: 189 LTNTMTQWADKIGHLQIADNPHRGEPGTGEINYDYL 224
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 27.0 bits (61), Expect = 4.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 38 IVTLIGPNGSGKSTI 52
+ L+G NG GK+ +
Sbjct: 25 VNVLVGENGQGKTNL 39
>gnl|CDD|180029 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 27.0 bits (61), Expect = 4.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 21 NGYKILQDINFTIKPNEI----VTLIGPNGSGKS----TIAKL 55
N YK L+ + E+ + LIGP GSGK+ T+A++
Sbjct: 89 NHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARI 131
>gnl|CDD|177578 PHA03293, PHA03293, deoxyribonuclease; Provisional.
Length = 523
Score = 27.0 bits (60), Expect = 4.9
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 178 CGILLISHNLHMVMASTDTVICLNNRICYQGPPQT--------IKDNAEYIRLFGTRATE 229
CG LLI MV AS D ++C + P T IK A+Y F
Sbjct: 234 CG-LLIDARTGMVGASLDMLVCDRDPHGVLAPHPTQTTLEFFEIKCRAKY--AFPPDDGS 290
Query: 230 ILA 232
L+
Sbjct: 291 PLS 293
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 637
Score = 26.8 bits (59), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 34 KPNEIVTLIGPNGSGKSTIAKLITGIIKPTI 64
P I+ + GP+G GKST K+++ + +
Sbjct: 108 APKRILLITGPSGCGKSTTIKILSKELGIQV 138
>gnl|CDD|162267 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 26.8 bits (59), Expect = 5.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56
I+P + V L GP G+GK+ +AK +
Sbjct: 209 IEPPKGVLLYGPPGTGKTLLAKAV 232
Score = 26.4 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLI 56
I+P + V L GP G+GK+ +AK +
Sbjct: 484 IRPPKGVLLFGPPGTGKTLLAKAV 507
>gnl|CDD|162298 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 26.6 bits (59), Expect = 5.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 41 LIGPNGSGKSTIAK 54
L+G GSGKSTIA
Sbjct: 3 LMGVAGSGKSTIAS 16
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 26.5 bits (58), Expect = 6.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 39 VTLIGPNGSGKSTIAKLITGIIK 61
V ++GP G+GK+ +AK I G K
Sbjct: 188 VLMVGPPGTGKTLLAKAIAGEAK 210
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 26.6 bits (60), Expect = 6.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 43 GPNGSGKSTIAKLI 56
GP+G+GKST+ K +
Sbjct: 12 GPSGAGKSTLVKAL 25
>gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E. This
family describes GspE, the E protein of the type II
secretion system, also called the main terminal branch
of the general secretion pathway. This model separates
GspE from the PilB protein of type IV pilin
biosynthesis.
Length = 486
Score = 26.2 bits (58), Expect = 7.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 34 KPNEIVTLIGPNGSGKST 51
+P+ I+ + GP GSGK+T
Sbjct: 240 RPHGIILVTGPTGSGKTT 257
>gnl|CDD|116881 pfam08298, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 358
Score = 26.3 bits (58), Expect = 7.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 37 EIVTLIGPNGSGKSTIAKLI 56
+I+ L+GP G GKS++A+ +
Sbjct: 86 QILYLLGPVGGGKSSLAERL 105
>gnl|CDD|178575 PLN02996, PLN02996, fatty acyl-CoA reductase.
Length = 491
Score = 26.2 bits (58), Expect = 8.2
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 26/107 (24%)
Query: 17 SFHKNGYKI--LQDIN---FTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHP 71
S KN K L D F+ P I GS K+ G I T+ S +
Sbjct: 338 SSLKNPVKFSNLHDFAYRYFSKNP-----WINKEGS----PVKVGKGTILSTMASFSLY- 387
Query: 72 QLIVGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDR-VNLI 117
+TI LPL ++ + + +P D L+R + L+
Sbjct: 388 ----------MTIRYLLPLKALQLVNIILPKRYGDKYTDLNRKIKLV 424
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 26.2 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKST 51
QDI I+ +++V + G GSGK+T
Sbjct: 80 QDILEAIRDHQVVIVAGETGSGKTT 104
>gnl|CDD|180114 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 25.9 bits (58), Expect = 8.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 43 GPNGSGKSTIAKLITGIIKP 62
G +GSGK+T+A I +
Sbjct: 13 GGSGSGKTTVASTIYEELGD 32
>gnl|CDD|182793 PRK10867, PRK10867, signal recognition particle protein;
Provisional.
Length = 433
Score = 26.2 bits (59), Expect = 8.8
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 27 QDINFTIKPNEIVTLIGPNGSGKST-IAKL 55
++N KP ++ ++G G+GK+T KL
Sbjct: 91 SELNLAAKPPTVIMMVGLQGAGKTTTAGKL 120
>gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional.
Length = 259
Score = 25.8 bits (57), Expect = 9.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 33 IKPNEIVTLIGPNGSGKSTIA 53
I+ NE + L+GP+G GK+ +A
Sbjct: 99 IERNENIVLLGPSGVGKTHLA 119
>gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 26.1 bits (58), Expect = 9.1
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 41 LIGPNGSGK-STIAKL 55
L+GP G GK +T AKL
Sbjct: 261 LMGPTGVGKTTTTAKL 276
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 25.9 bits (57), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 33 IKPNEIVTLIGPNGSGKSTIAKLITGIIKPT 63
I+P + V L GP G+GK+ +AK + T
Sbjct: 153 IEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 26.0 bits (58), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 38 IVTLIGPNGSGKSTIAKLI 56
V G +GSGKSTIA L+
Sbjct: 462 TVWFTGLSGSGKSTIANLV 480
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important
residue (active site in E.coli) is residue 100 of the
seed alignment.
Length = 184
Score = 25.9 bits (57), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 38 IVTLIGPNGSGKSTIA 53
++ L G +GSGKSTIA
Sbjct: 20 VIWLTGLSGSGKSTIA 35
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.138 0.396
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,817,478
Number of extensions: 240504
Number of successful extensions: 1227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 490
Length of query: 240
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,028,145
Effective search space: 600193605
Effective search space used: 600193605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)