HHsearch alignment for GI: 254780719 and conserved domain: COG1172

>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].

Probab=96.32  E-value=0.057  Score=28.85  Aligned_cols=112  Identities=16%  Similarity=0.218  Sum_probs=65.6

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCC-HHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHH-HHH
Q ss_conf             99986310357650456999999999999999996-21320-01333443-3324422876705899998999999-984
Q gi|254780719|r   69 SLVLLQIQKNEALSSDAILGVITHSTISLALVILS-FMKWV-NTDLTSFL-FGDILAVNTTDILLIWGIGFLNIMI-LFK  144 (260)
Q Consensus        69 al~i~~l~~~~~~~~da~igi~~s~~~alg~llls-~~~~~-~~~l~~~L-fG~il~v~~~dv~~~~~~~~~~~~~-l~~  144 (260)
T Consensus       106 G~iNG~lv~~~~ip~--fI~TLgt~~i~rGl~l~~t~G~~i~~~~~~~~~g~~~~~GiP~~~~i~i~~~~~~~~~l~rT~  183 (316)
T COG1172         106 GLINGLLVARLRIPP--FIATLGTMFILRGLALLLTGGRPISLPDAFAWLGSGRILGIPVPVIIFIVVAALFWLLLRRTR  183 (316)
T ss_pred             HHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             998989999817882--999888999999999887099267797899984358542870999999999999999984560


Q ss_pred             HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             24566541288899998089810677699999999999
Q gi|254780719|r  145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS  182 (260)
Q Consensus       145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~  182 (260)
T Consensus       184 ~Gr~iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAa  221 (316)
T COG1172         184 FGRSIYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAA  221 (316)
T ss_pred             CCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHH
T ss_conf             14789897898999998498812244246899999999