HHsearch alignment for GI: 254780719 and conserved domain: PRK11285
>PRK11285 araH L-arabinose transporter permease protein; Provisional.
Probab=96.70 E-value=0.033 Score=30.19 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=62.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--HH
Q ss_conf 9986310357650456999999999999999996-2132---0013334433324422876705899998999999--98
Q gi|254780719|r 70 LVLLQIQKNEALSSDAILGVITHSTISLALVILS-FMKW---VNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMI--LF 143 (260)
Q Consensus 70 l~i~~l~~~~~~~~da~igi~~s~~~alg~llls-~~~~---~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~--l~ 143 (260)
T Consensus 123 ~iNG~lv~~~~ip~--fI~TLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~~~~gip~~~~i~i-i~~~~~~~~l~~T 199 (327)
T PRK11285 123 LVNGFVIARLRINA--LITTLATMQIVRGLAYIISDGKAVGISDERFFALGYASFFGVPAPIWLTV-ACFVVFGFLLNKT 199 (327)
T ss_pred HHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHEECCCEEECCCCHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHC
T ss_conf 99838676107857--99999999999987853328843255888999851384237548999999-9999999999634
Q ss_pred HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 424566541288899998089810677699999999999
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS 182 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~ 182 (260)
T Consensus 200 ~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~ay~isG~lag 238 (327)
T PRK11285 200 VFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSA 238 (327)
T ss_pred CCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 054599881698999988189833740199999999999