HHsearch alignment for GI: 254780719 and conserved domain: PRK11285

>PRK11285 araH L-arabinose transporter permease protein; Provisional.
Probab=96.70  E-value=0.033  Score=30.19  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH--HH
Q ss_conf             9986310357650456999999999999999996-2132---0013334433324422876705899998999999--98
Q gi|254780719|r   70 LVLLQIQKNEALSSDAILGVITHSTISLALVILS-FMKW---VNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMI--LF  143 (260)
Q Consensus        70 l~i~~l~~~~~~~~da~igi~~s~~~alg~llls-~~~~---~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~--l~  143 (260)
T Consensus       123 ~iNG~lv~~~~ip~--fI~TLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~~~~gip~~~~i~i-i~~~~~~~~l~~T  199 (327)
T PRK11285        123 LVNGFVIARLRINA--LITTLATMQIVRGLAYIISDGKAVGISDERFFALGYASFFGVPAPIWLTV-ACFVVFGFLLNKT  199 (327)
T ss_pred             HHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHEECCCEEECCCCHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHC
T ss_conf             99838676107857--99999999999987853328843255888999851384237548999999-9999999999634


Q ss_pred             HHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             424566541288899998089810677699999999999
Q gi|254780719|r  144 KIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMIS  182 (260)
Q Consensus       144 ~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~  182 (260)
T Consensus       200 ~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~ay~isG~lag  238 (327)
T PRK11285        200 VFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSA  238 (327)
T ss_pred             CCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             054599881698999988189833740199999999999