HHsearch alignment for GI: 254780719 and conserved domain: TIGR03622
>TIGR03622 urea_t_UrtB_arc urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtB subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=95.00 E-value=0.2 Score=25.91 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=40.8
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 22876705899998999999984-----2456654128889999808981067769999999999
Q gi|254780719|r 122 AVNTTDILLIWGIGFLNIMILFK-----IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMI 181 (260)
Q Consensus 122 ~v~~~dv~~~~~~~~~~~~~l~~-----~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v 181 (260)
T Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~a~RAv~~n~~~A~~~GIn~~r~~~~~f~is~~lA 193 (283)
T TIGR03622 129 TYSTYRVFLPLVAIGVLVGLYVLFTRTEFGVRARATIQDPETARAMGVDTDRMYVTTFAIGSGLA 193 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 23299999999999999999999986889898899965899997769787489999999999999