>cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo

Probab=96.35  E-value=0.055  Score=28.95  Aligned_cols=39  Identities=13%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             245665412888999980898106776999999999999
Q gi|254780719|r  145 IWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISV  183 (260)
Q Consensus       145 ~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~  183 (260)
T Consensus       153 ~Gr~l~Ai~~n~~aA~~~Ginv~r~k~~af~isg~lagl  191 (272)
T cd06582         153 LGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGL  191 (272)
T ss_pred             CCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             045684763398999885998889879998999999999