Query gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 260
No_of_seqs 123 out of 2499
Neff 7.3
Searched_HMMs 33803
Date Wed Jun 1 14:30:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780719.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qi9_A Vitamin B12 import sys 99.9 1.6E-23 4.8E-28 146.2 19.2 252 8-260 58-325 (326)
2 >2nq2_A Hypothetical ABC trans 99.7 2E-16 5.9E-21 107.5 16.0 155 37-191 4-167 (168)
3 >2nq2_A Hypothetical ABC trans 93.4 0.37 1.1E-05 24.0 7.1 61 174-235 65-135 (139)
4 >1td4_A Head decoration protei 11.0 7.9 0.00023 16.8 -4.6 16 29-44 99-114 (115)
5 >1tba_A TAFII230, transcriptio 9.5 72 0.0021 11.5 -0.1 15 108-122 6-20 (67)
6 >3epo_A Thiamine biosynthesis 8.3 1.1E+02 0.0031 10.7 1.8 20 144-163 16-35 (101)
7 >2odb_B Serine/threonine-prote 5.2 65 0.0019 11.8 -2.1 23 150-172 12-34 (35)
8 >2qme_I CRIB domain of the ser 5.0 67 0.002 11.7 -2.1 23 150-172 12-34 (36)
9 >2wwb_C SEC61BETA, protein tra 4.6 1.9E+02 0.0057 9.2 0.5 26 230-255 54-83 (96)
10 >2ww9_C Protein transport prot 4.2 2.1E+02 0.0063 9.0 2.7 29 228-256 43-75 (87)
No 1
>>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_A* (A:)
Probab=99.92 E-value=1.6e-23 Score=146.20 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999998788999999879996435----89999999999999500-----36679999999999998631035
Q gi|254780719|r 8 RALFSGIGIVLSTGPLGCFIIWQRIAYFGDT----IAHSALLGVALSLIFQL-----PLTICIFMIATLTSLVLLQIQKN 78 (260)
Q Consensus 8 ~all~~~~~~~~~~~lG~~vv~rr~s~~~~a----lsH~a~~Gial~~~l~~-----~~~~ga~~~~~l~al~i~~l~~~ 78 (260)
+-.+++.+.|...+.-|...-..-+-.++|. ++..+..|++++.++.. .....++..+...........++
T Consensus 58 PR~l~a~l~G~~LavsG~~~Q~~~rNpLa~P~ilGi~sga~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (326)
T 2qi9_A 58 PRTLAVLLVGAALAISGAVXQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLSAIAGALIITLILLRFAR 137 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCGGGGTHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999369876742454025899999999982454027899999999999999999998762
Q ss_pred CCCHHHHHH--HHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 765045699--99999999-999999962132001333443332442287670589999899999998424566541288
Q gi|254780719|r 79 EALSSDAIL--GVITHSTI-SLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVN 155 (260)
Q Consensus 79 ~~~~~da~i--gi~~s~~~-alg~llls~~~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD 155 (260)
++.+.+..+ |+..+..+ +....+....++...+...++.|+....+|+|++.......+........+|++....+|
T Consensus 138 ~~~~~~~lil~gi~~~~~~~a~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~lg 217 (326)
T 2qi9_A 138 RHLSTSRLLLAGVALGIISSALXTWAIYFSTSVDLRQLXYWXXGGFGGVDWRQSWLXLALIPVLLWISSQSRPXNXLALG 217 (326)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHTCCCTTCCGGGHHHHTTTHHHHHHHTTCHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13564056789999999999999999998407999999998764025467423256787506899999987676654410
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 8999980898106776999999999999999988999999999999999974199899999999999999999999999-
Q gi|254780719|r 156 YELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSL- 234 (260)
Q Consensus 156 ~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~- 234 (260)
||.|++.|+|+++++...+.+.++.++.++..+|.+.+.+ ++.|+.+.+...++.++.++.+.+.|......+..++.
T Consensus 218 ~~~A~slGv~v~~~~~~~lil~~~lta~~vs~vG~I~FvG-Li~p~iar~l~~~~~~~~l~~s~l~Ga~lll~~d~l~r~ 296 (326)
T 2qi9_A 218 EISARQLGLPLWFWRNVLVAATGWXVGVSVALAGAIGFIG-LVIPHILRLSGLTDHRVLLPGCALAGASALLLADIVARL 296 (326)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSST-THHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6677706877667668999999999999997035888989-868999998627765469999999999999999999966
Q ss_pred ---HHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf ---95588089999999999999987239
Q gi|254780719|r 235 ---IFDTPSGPSIIITSLFLFILSFFYKK 260 (260)
Q Consensus 235 ---~~~lp~g~~Iv~~~~~~f~~~~~~~k 260 (260)
..++|.|..+.++.+..|+.....+|
T Consensus 297 ~~~~~eiPvg~~~~liG~p~fi~ll~k~~ 325 (326)
T 2qi9_A 297 ALAAAELPIGVVTATLGAPVFIWLLLKAG 325 (326)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHHSCC-
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 05666631999999999999999762047
No 2
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:94-261)
Probab=99.74 E-value=2e-16 Score=107.48 Aligned_cols=155 Identities=16% Similarity=0.231 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHHHHHHHHHHHH-CCC--
Q ss_conf 358999999999999950036---6799999999999986310-357650--4569999999999999999962-132--
Q gi|254780719|r 37 DTIAHSALLGVALSLIFQLPL---TICIFMIATLTSLVLLQIQ-KNEALS--SDAILGVITHSTISLALVILSF-MKW-- 107 (260)
Q Consensus 37 ~alsH~a~~Gial~~~l~~~~---~~ga~~~~~l~al~i~~l~-~~~~~~--~da~igi~~s~~~alg~llls~-~~~-- 107 (260)
-+++|.+.+|++++..+..+. ...++..+.+.+..+..+. ++++.+ +....|+..+..+.....++.. ..+
T Consensus 4 lGvs~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~ 83 (168)
T 2nq2_A 4 IGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQYISDTEE 83 (168)
T ss_dssp TSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 78768999999999987622666789999998999999999999707888411110027899999999999999703077
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00133344333244228767058999989999999842456654128889999808981067769999999999999999
Q gi|254780719|r 108 VNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKF 187 (260)
Q Consensus 108 ~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~ 187 (260)
...+++.|++||....+|+|++.......+.....+..+|+++...+|||.|++.|+|+++.++..+.+.++.++.++..
T Consensus 84 ~~~~~~~wl~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~lg~~~A~slGv~v~~~~~~~l~~~~ll~a~~va~ 163 (168)
T 2nq2_A 84 KLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAI 163 (168)
T ss_dssp HHHHHHHHTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTGGGGGGSCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998612435788321343243304798888876552554317969984567877899999999999999999851
Q ss_pred HHHH
Q ss_conf 8899
Q gi|254780719|r 188 IGIT 191 (260)
Q Consensus 188 vG~l 191 (260)
+|.+
T Consensus 164 vG~I 167 (168)
T 2nq2_A 164 SGSI 167 (168)
T ss_dssp HCCC
T ss_pred CCHH
T ss_conf 2237
No 3
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:1-93,A:262-307)
Probab=93.45 E-value=0.37 Score=24.04 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999889999----------999999999999741998999999999999999999999999
Q gi|254780719|r 174 IMITSLMISVSIKFIGITLI----------TSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLI 235 (260)
Q Consensus 174 ~~l~al~v~~~v~~vG~llv----------~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~ 235 (260)
-++.++.+..+....|.++- ++ ++.|+...+..++++|..++.|.++|.......-.+|-.
T Consensus 65 R~l~a~lvGa~LaiaG~imQ~l~RNPLAdFvG-LivPHi~r~lvG~~~~~~ip~s~l~Ga~~l~~aD~~~R~ 135 (139)
T 2nq2_A 65 RILTALCVGAGLALSGVVLQGIFRNPLVNWVG-LIIPHLSRMLVGANHQSLLPCTMLVGATYMLLVDNVARS 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTCCSST-THHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999860489898889-879999999618886419999999999999999999856
No 4
>>1td4_A Head decoration protein; SHP, viral protein; 1.50A {Enterobacteria phage P21} (A:)
Probab=11.03 E-value=7.9 Score=16.82 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9879996435899999
Q gi|254780719|r 29 WQRIAYFGDTIAHSAL 44 (260)
Q Consensus 29 ~rr~s~~~~alsH~a~ 44 (260)
.|+-.|.|.++||+++
T Consensus 99 kK~~AF~Gs~iSh~~~ 114 (115)
T 1td4_A 99 KKANAFAGSALSHAAL 114 (115)
T ss_dssp HHHTTTTTSEEEEECC
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 7766662785422358
No 5
>>1tba_A TAFII230, transcription initiation factor IID 230K chain; complex (transcription factors), TAF, TAFII230, solution structure; NMR {Drosophila melanogaster} (A:)
Probab=9.53 E-value=72 Score=11.55 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 001333443332442
Q gi|254780719|r 108 VNTDLTSFLFGDILA 122 (260)
Q Consensus 108 ~~~~l~~~LfG~il~ 122 (260)
...++..+|||||-.
T Consensus 6 ~~~~LtGfLFGNId~ 20 (67)
T 1tba_A 6 NGLDLTGILFGNIDS 20 (67)
T ss_dssp CSCCCTTHHHHCEET
T ss_pred CCCCEEEEEECCCCC
T ss_conf 771101224424277
No 6
>>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM superfamily, biosynthetic protein; HET: MP5; 2.10A {Caulobacter crescentus} PDB: 3epm_A* 3epn_A* (A:512-612)
Probab=8.28 E-value=1.1e+02 Score=10.66 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCHHHHHHCC
Q ss_conf 42456654128889999808
Q gi|254780719|r 144 KIWKPLLATTVNYELAKAEG 163 (260)
Q Consensus 144 ~~~r~l~~~~fD~~~A~~~G 163 (260)
+-|.+..-+++|||.|+..-
T Consensus 16 lDWe~qf~LalDPekAr~~r 35 (101)
T 3epo_A 16 FRWEDQFNLGLDPETARKFH 35 (101)
T ss_dssp TCHHHHHHTSSCHHHHHHHC
T ss_pred CCHHHHHHHCCCHHHHHHHH
T ss_conf 89999998706989999987
No 7
>>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structural genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} (B:)
Probab=5.19 E-value=65 Score=11.82 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=15.9
Q ss_pred HHHCCCHHHHHHCCCCCCHHHHH
Q ss_conf 54128889999808981067769
Q gi|254780719|r 150 LATTVNYELAKAEGMQPEKIKLI 172 (260)
Q Consensus 150 ~~~~fD~~~A~~~Gi~v~~~~~l 172 (260)
.-..||++.-+..|+|..|-+++
T Consensus 12 ~HVgfD~~tG~f~GLP~~W~~ll 34 (35)
T 2odb_B 12 VHTSFDPKEGKFVGLPPQWQNIL 34 (35)
T ss_dssp EEEEEETTTTEEESCCHHHHHHH
T ss_pred EEEEECCCCCEEECCCHHHHHHH
T ss_conf 67426699880834999999974
No 8
>>2qme_I CRIB domain of the serine/threonine-protein kinase PAK 1; GTPase RAC3, small GTP binding protein, P21 RAC; HET: GCP; 1.75A {Homo sapiens} (I:)
Probab=5.02 E-value=67 Score=11.74 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=16.3
Q ss_pred HHHCCCHHHHHHCCCCCCHHHHH
Q ss_conf 54128889999808981067769
Q gi|254780719|r 150 LATTVNYELAKAEGMQPEKIKLI 172 (260)
Q Consensus 150 ~~~~fD~~~A~~~Gi~v~~~~~l 172 (260)
.-..||++.-+..|+|..|-+++
T Consensus 12 ~HVg~D~~tG~f~GLP~~W~~ll 34 (36)
T 2qme_I 12 IHVGFDAVTGEFTGMPEQWARLL 34 (36)
T ss_dssp EEECCBTTTTBCC----------
T ss_pred EEEEECCCCCEEECCCHHHHHHH
T ss_conf 47317699981816999999985
No 9
>>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (C:)
Probab=4.62 E-value=1.9e+02 Score=9.25 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=10.8
Q ss_pred HHHHHHHCC----CCHHHHHHHHHHHHHHH
Q ss_conf 999999558----80899999999999999
Q gi|254780719|r 230 LYGSLIFDT----PSGPSIIITSLFLFILS 255 (260)
Q Consensus 230 ~~lS~~~~l----p~g~~Iv~~~~~~f~~~ 255 (260)
-++-+|.|= -.+|..|+++.+.|+.+
T Consensus 54 ~mlrfYTDdspGlKV~P~~VLvmSl~FI~s 83 (96)
T 2wwb_C 54 GMWRFYTEDSPGLKVGPVPVLVMSLLFIAS 83 (96)
T ss_dssp -------CCSCCCCCSSCSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCEECCEEEHHHHHHHHHH
T ss_conf 436775278887350787532547899999
No 10
>>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C (C:)
Probab=4.24 E-value=2.1e+02 Score=8.99 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=14.3
Q ss_pred HHHHHHHHHCC----CCHHHHHHHHHHHHHHHH
Q ss_conf 99999999558----808999999999999998
Q gi|254780719|r 228 IGLYGSLIFDT----PSGPSIIITSLFLFILSF 256 (260)
Q Consensus 228 ~G~~lS~~~~l----p~g~~Iv~~~~~~f~~~~ 256 (260)
.+-++-||.|= -.+|..|+++.+.|+.+.
T Consensus 43 s~~mlrfYTddspGlKv~P~~VLvmSl~FI~sV 75 (87)
T 2ww9_C 43 SSSILKLYTDEANGFRVDSLVVLFLSVGFIFSV 75 (87)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCEECCEEEHHHHHHHHHHH
T ss_conf 752034651688873616775356788999999
Done!