HHSEARCH alignment of GI: 254780719 and SCOP domain: d1l7va_

Alignment
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=99.89  E-value=2.4e-21  Score=132.24  Aligned_cols=247  Identities=13%  Similarity=0.112  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999998788999----999879996435899999999999995003------66799999999999986310357
Q gi|254780719|r   10 LFSGIGIVLSTGPLGCF----IIWQRIAYFGDTIAHSALLGVALSLIFQLP------LTICIFMIATLTSLVLLQIQKNE   79 (260)
Q Consensus        10 ll~~~~~~~~~~~lG~~----vv~rr~s~~~~alsH~a~~Gial~~~l~~~------~~~ga~~~~~l~al~i~~l~~~~   79 (260)
                      .+++.+.|...+.-|..    ...+=.+----+++..+-.|++++.+++.+      ....++..+...........|+.
T Consensus        60 ~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (324)
T d1l7va_          60 TLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRH  139 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999817988783678754288999999997233225788999999999999999999986146


Q ss_pred             CCHH-HHHHHHHHHHHHHHHH-HHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             6504-5699999999999999-999621-320013334433324422876705899998999999984245665412888
Q gi|254780719|r   80 ALSS-DAILGVITHSTISLAL-VILSFM-KWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNY  156 (260)
Q Consensus        80 ~~~~-da~igi~~s~~~alg~-llls~~-~~~~~~l~~~LfG~il~v~~~dv~~~~~~~~~~~~~l~~~~r~l~~~~fD~  156 (260)
                      ..+. -...|+..+..++... .+.... ++...+...|+.|+....+|+|++.......+. .......|++...+.||
T Consensus       140 ~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~lgd  218 (324)
T d1l7va_         140 LSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVL-LWICCQSRPMNMLALGE  218 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHH-HHHHHCHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCH
T ss_conf             88136778899999999999999999547999999999976500445320357788751899-99999984466553036


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf             9999808981067769999999999999999889999999999999999741998999999999999999999999999-
Q gi|254780719|r  157 ELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLI-  235 (260)
Q Consensus       157 ~~A~~~Gi~v~~~~~l~~~l~al~v~~~v~~vG~llv~allv~Paa~A~~l~~~~~~~~~~s~~~g~~~~~~G~~lS~~-  235 (260)
                      |.|++.|+|+++++...+.+.++.++.++..+|.+.+.+ ++.|+.+.+...+++|+.++.|.++|.........++.. 
T Consensus       219 ~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvG-Li~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l~r~i  297 (324)
T d1l7va_         219 ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIG-LVIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLA  297 (324)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSS-SHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             888706866677779999999999999997236445558-7579999986077751799999999999999999999760


Q ss_pred             ---HCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             ---558808999999999999998723
Q gi|254780719|r  236 ---FDTPSGPSIIITSLFLFILSFFYK  259 (260)
Q Consensus       236 ---~~lp~g~~Iv~~~~~~f~~~~~~~  259 (260)
                         .|+|.|-.+.++.+. |++.++.|
T Consensus       298 ~~p~eiPvGvitaliG~P-~fi~Ll~r  323 (324)
T d1l7va_         298 LAAAELPIGVVTATLGAP-VFIWLLLK  323 (324)
T ss_dssp             CSSSCCCHHHHHHHHHHH-HHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH-HHHHHHHH
T ss_conf             466563299999999999-99999983


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: ABC transporter involved in vitamin B12 uptake, BtuC
superfamily: ABC transporter involved in vitamin B12 uptake, BtuC
family: ABC transporter involved in vitamin B12 uptake, BtuC
domain: ABC transporter involved in vitamin B12 uptake, BtuC
species: Escherichia coli [TaxId: 562]