RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter,
permease protein [Candidatus Liberibacter asiaticus str. psy62]
         (260 letters)



>1bvp_1 Bluetongue virus coat protein VP7; trimer; 2.60A
          {Bluetongue virus 10} (1:120-258)
          Length = 139

 Score = 25.6 bits (56), Expect = 6.2
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 22 PLGCFIIWQRIAYFGDTIAHS--ALLGVALSL 51
          P+  +++W+RI  F     +S     GV +S+
Sbjct: 62 PMMIYLVWRRIENFAMAQGNSQQTQAGVTVSV 93


>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP,
           oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo
           sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
           (A:36-258,A:310-335)
          Length = 249

 Score = 25.7 bits (55), Expect = 7.2
 Identities = 5/47 (10%), Positives = 15/47 (31%)

Query: 181 ISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGII 227
           + ++  F       +   +P + A   +     MA +     +   +
Sbjct: 5   VDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEMAKVLCKFSLFTAV 51


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.145    0.424 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,792,775
Number of extensions: 71193
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 22
Length of query: 260
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 173
Effective length of database: 2,015,014
Effective search space: 348597422
Effective search space used: 348597422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.8 bits)