BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter,
permease protein [Candidatus Liberibacter asiaticus str. psy62]
(260 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 260
Score = 503 bits (1294), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MYNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTIC 60
MYNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTIC
Sbjct: 1 MYNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTIC 60
Query: 61 IFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDI 120
IFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDI
Sbjct: 61 IFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDI 120
Query: 121 LAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLM 180
LAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLM
Sbjct: 121 LAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLM 180
Query: 181 ISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPS 240
ISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPS
Sbjct: 181 ISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPS 240
Query: 241 GPSIIITSLFLFILSFFYKK 260
GPSIIITSLFLFILSFFYKK
Sbjct: 241 GPSIIITSLFLFILSFFYKK 260
>gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 277
Score = 83.6 bits (205), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 7/247 (2%)
Query: 16 IVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQI 75
+V+ L CFII + ++ G+ I+HS L G+ LS + +PL I F+ + +L +
Sbjct: 27 VVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGIPLEIGAFIAGMICTLSAGYL 86
Query: 76 QKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIG 135
++ D +L ++ ++ +IL + + L GD+L ++ +DI+
Sbjct: 87 KEKSYFQEDLVLSIVFSGMFAIG-IILILKVHSSLHFSHILLGDMLGISKSDIITTAFFA 145
Query: 136 FLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLI---FIMITSLMISVSIKFIGITL 192
F++I L LL ++ A MQ IKL+ F+++ SL+I +S+K IGI L
Sbjct: 146 FISISFLILKKNDLLLMI--FDPMHAHSMQ-IPIKLLHYNFLIVLSLIIVISLKSIGIIL 202
Query: 193 ITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPSIIITSLFLF 252
++L+LP TA S M +L+ II ++ ++G+Y S ++ + P+++I F
Sbjct: 203 PPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFF 262
Query: 253 ILSFFYK 259
++ + Y
Sbjct: 263 VVVYAYS 269
>gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 273
Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 109/226 (48%), Gaps = 1/226 (0%)
Query: 21 GPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQIQKNEA 80
G L ++I + + G+ I+H+ G+ + +PL++ + L + ++++I++
Sbjct: 29 GLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIMVKIKETTK 88
Query: 81 LSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIM 140
L D + V+ S A+ +LS + + + G+ L+++ +D + + I F
Sbjct: 89 LREDVAIAVVYIIFYSFAMFMLS-LSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVAC 147
Query: 141 ILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILP 200
I++ WK + + A + G+ + +K++F + ++ I + + +GI L+ + +I P
Sbjct: 148 IVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITP 207
Query: 201 TVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPSIII 246
TA+ S S + ++++G +G Y S D G I+I
Sbjct: 208 GATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVI 253
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 111 DLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYE 157
D+TS FGD + T+ G M++F I L ++V E
Sbjct: 277 DMTSNQFGDGQVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKE 323
>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 820
Score = 23.1 bits (48), Expect = 5.7, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 216 ILATIIGILGIIIGLYGSLIFDTPSGPSIIITS 248
ILA + + I + + + I TPSG III++
Sbjct: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
Liberibacter asiaticus str. psy62]
Length = 500
Score = 22.7 bits (47), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 185 IKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIG 229
++ +G+ +T L + V +++P N+A +AT ++ +G
Sbjct: 429 VEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVG 473
>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 628
Score = 22.3 bits (46), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 135 GFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFI 188
G + +L+ + L TT+N+ L + E I L+ +MI L I V+IK+I
Sbjct: 28 GDIGTSVLYAFKEALKTTTMNHTLLVE---RTEVIGLVSLMIWVLTIVVTIKYI 78
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.331 0.145 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,221
Number of Sequences: 1233
Number of extensions: 5868
Number of successful extensions: 33
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 12
length of query: 260
length of database: 328,796
effective HSP length: 72
effective length of query: 188
effective length of database: 240,020
effective search space: 45123760
effective search space used: 45123760
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 37 (18.9 bits)