BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] (260 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780719|ref|YP_003065132.1| zinc uptake ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 260 Score = 503 bits (1294), Expect = e-144, Method: Compositional matrix adjust. Identities = 260/260 (100%), Positives = 260/260 (100%) Query: 1 MYNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTIC 60 MYNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTIC Sbjct: 1 MYNEFFIRALFSGIGIVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTIC 60 Query: 61 IFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDI 120 IFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDI Sbjct: 61 IFMIATLTSLVLLQIQKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDI 120 Query: 121 LAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLM 180 LAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLM Sbjct: 121 LAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLM 180 Query: 181 ISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPS 240 ISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPS Sbjct: 181 ISVSIKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPS 240 Query: 241 GPSIIITSLFLFILSFFYKK 260 GPSIIITSLFLFILSFFYKK Sbjct: 241 GPSIIITSLFLFILSFFYKK 260 >gi|254780540|ref|YP_003064953.1| ABC transporter, membrane spanning protein (iron transport) [Candidatus Liberibacter asiaticus str. psy62] Length = 277 Score = 83.6 bits (205), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 7/247 (2%) Query: 16 IVLSTGPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQI 75 +V+ L CFII + ++ G+ I+HS L G+ LS + +PL I F+ + +L + Sbjct: 27 VVIPMSVLSCFIILKNQSFAGEAISHSVLPGIVLSHMAGIPLEIGAFIAGMICTLSAGYL 86 Query: 76 QKNEALSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIG 135 ++ D +L ++ ++ +IL + + L GD+L ++ +DI+ Sbjct: 87 KEKSYFQEDLVLSIVFSGMFAIG-IILILKVHSSLHFSHILLGDMLGISKSDIITTAFFA 145 Query: 136 FLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLI---FIMITSLMISVSIKFIGITL 192 F++I L LL ++ A MQ IKL+ F+++ SL+I +S+K IGI L Sbjct: 146 FISISFLILKKNDLLLMI--FDPMHAHSMQ-IPIKLLHYNFLIVLSLIIVISLKSIGIIL 202 Query: 193 ITSLLILPTVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPSIIITSLFLF 252 ++L+LP TA S M +L+ II ++ ++G+Y S ++ + P+++I F Sbjct: 203 PPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFF 262 Query: 253 ILSFFYK 259 ++ + Y Sbjct: 263 VVVYAYS 269 >gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/226 (21%), Positives = 109/226 (48%), Gaps = 1/226 (0%) Query: 21 GPLGCFIIWQRIAYFGDTIAHSALLGVALSLIFQLPLTICIFMIATLTSLVLLQIQKNEA 80 G L ++I + + G+ I+H+ G+ + +PL++ + L + ++++I++ Sbjct: 29 GLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIMVKIKETTK 88 Query: 81 LSSDAILGVITHSTISLALVILSFMKWVNTDLTSFLFGDILAVNTTDILLIWGIGFLNIM 140 L D + V+ S A+ +LS + + + G+ L+++ +D + + I F Sbjct: 89 LREDVAIAVVYIIFYSFAMFMLS-LSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVAC 147 Query: 141 ILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFIGITLITSLLILP 200 I++ WK + + A + G+ + +K++F + ++ I + + +GI L+ + +I P Sbjct: 148 IVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITP 207 Query: 201 TVTARRFSTSPENMAILATIIGILGIIIGLYGSLIFDTPSGPSIII 246 TA+ S S + ++++G +G Y S D G I+I Sbjct: 208 GATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVI 253 >gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 21/47 (44%) Query: 111 DLTSFLFGDILAVNTTDILLIWGIGFLNIMILFKIWKPLLATTVNYE 157 D+TS FGD + T+ G M++F I L ++V E Sbjct: 277 DMTSNQFGDGQVLTNTNHCFPHGASHSKYMLMFAIGNQLSRSSVGKE 323 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 23.1 bits (48), Expect = 5.7, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 216 ILATIIGILGIIIGLYGSLIFDTPSGPSIIITS 248 ILA + + I + + + I TPSG III++ Sbjct: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 >gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 500 Score = 22.7 bits (47), Expect = 7.3, Method: Compositional matrix adjust. Identities = 10/45 (22%), Positives = 24/45 (53%) Query: 185 IKFIGITLITSLLILPTVTARRFSTSPENMAILATIIGILGIIIG 229 ++ +G+ +T L + V +++P N+A +AT ++ +G Sbjct: 429 VEELGLRQVTDLSAIEKVVDEVINSNPNNVARIATKPNLVSWFVG 473 >gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 628 Score = 22.3 bits (46), Expect = 9.5, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 135 GFLNIMILFKIWKPLLATTVNYELAKAEGMQPEKIKLIFIMITSLMISVSIKFI 188 G + +L+ + L TT+N+ L + E I L+ +MI L I V+IK+I Sbjct: 28 GDIGTSVLYAFKEALKTTTMNHTLLVE---RTEVIGLVSLMIWVLTIVVTIKYI 78 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.331 0.145 0.424 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 155,221 Number of Sequences: 1233 Number of extensions: 5868 Number of successful extensions: 33 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 12 length of query: 260 length of database: 328,796 effective HSP length: 72 effective length of query: 188 effective length of database: 240,020 effective search space: 45123760 effective search space used: 45123760 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 37 (18.9 bits)