HHsearch alignment for GI: 254780720 and conserved domain: cd01041
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.20 E-value=3.9e-09 Score=75.24 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHH
Q ss_conf 99999999999999999999999815994789999999999999999999999995399714378225720488989999
Q gi|254780720|r 7 RVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLF 86 (164)
Q Consensus 7 ~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~ 86 (164)
T Consensus 4 ~NL~~AfaGEs~A~~rY~~fA~~A~~eG~~~iA~lF~~tA~~E~~HA~~~~~~l~~~~~~~~-----~~~~~~~~t~~NL 78 (134)
T cd01041 4 KNLLAAFAGESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIGIGDTLENL 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCCHHHHH
T ss_conf 89999984789999999999999988677999999999999999999999999734576655-----5555646599999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-9999999999999970998899999999999999999999999999
Q gi|254780720|r 87 SLMYEHEN-KVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKI 140 (164)
Q Consensus 87 ~~al~~E~-~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l 140 (164)
T Consensus 79 ~~Ai~GE~~E~~~mYP~fa~~A~~EG~~~aA~~F~~i~~~E~~H~~~y~~~l~~l 133 (134)
T cd01041 79 KAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALENL 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9998513778999719999999886749999999999999999999999998745