HHsearch alignment for GI: 254780720 and conserved domain: cd01047
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=90.90 E-value=1.2 Score=23.58 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CCCCCH
Q ss_conf 9999999999999999999999999981599478999999999999999999999999539971437822572-048898
Q gi|254780720|r 4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPV-ISANDV 82 (164)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~-~~~~~~ 82 (164)
T Consensus 63 ~f~dfL~~SctsEFSG~lLykEl~rr~k~~-nP~l~e~f~~MaRDEaRHAGFlN~al~d~~~~lDLgfLtk~k~YT~F~p 141 (323)
T cd01047 63 IFLEFLERSCTSEFSGFLLYKELGRRLKNT-NPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRKYTFFKP 141 (323)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEECC
T ss_conf 999999987677601236899999874237-9079999999865477777678899998495202476516673266576
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999970998899999999999
Q gi|254780720|r 83 EGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKE 125 (164)
Q Consensus 83 ~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~E 125 (164)
T Consensus 142 kfI~YatYLSEKIGY~RYItIyRhLe~~Pe~rf~PiF~~Fe~W 184 (323)
T cd01047 142 KFIFYATYLSEKIGYWRYITIYRHLERNPENQFHPIFKYFENW 184 (323)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 0454034666543167887999999869110236079989988