Query         gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 164
No_of_seqs    118 out of 1088
Neff          7.7 
Searched_HMMs 39220
Date          Sun May 29 20:28:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780720.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10304 ferritin; Provisional 100.0       0       0  336.2  22.5  164    1-164     2-165 (165)
  2 cd01055 Nonheme_Ferritin nonhe 100.0       0       0  317.6  19.1  156    2-157     1-156 (156)
  3 COG1528 Ftn Ferritin-like prot 100.0       0       0  313.6  21.7  163    1-163     2-164 (167)
  4 cd00904 Ferritin Ferritin iron 100.0       0       0  303.2  18.3  154    2-155     1-160 (160)
  5 cd01056 Euk_Ferritin eukaryoti 100.0 5.2E-44       0  287.2  19.5  155    2-156     1-161 (161)
  6 cd00907 Bacterioferritin Bacte 100.0 5.7E-31 1.5E-35  207.9  20.0  143    2-145     3-145 (153)
  7 KOG2332 consensus              100.0 9.3E-32 2.4E-36  212.7  13.0  158    2-159    14-177 (178)
  8 PRK10635 bacterioferritin, iro 100.0 9.4E-28 2.4E-32  188.4  19.3  147    2-152     4-150 (158)
  9 pfam00210 Ferritin Ferritin-li 100.0 3.1E-26 7.8E-31  179.2  19.3  138    6-143     1-142 (142)
 10 COG2193 Bfr Bacterioferritin (  99.9 5.2E-24 1.3E-28  165.6  17.5  147    2-152     4-150 (157)
 11 cd01052 DPSL DPS-like protein,  99.9 4.9E-23 1.3E-27  159.7  18.6  134    3-137     5-148 (148)
 12 PRK13456 DNA protection protei  99.8 2.9E-18 7.3E-23  130.7  17.6  135    3-138    17-161 (184)
 13 TIGR00754 bfr bacterioferritin  99.6 5.9E-14 1.5E-18  104.5  13.8  147    2-152     4-150 (157)
 14 cd00657 Ferritin_like Ferritin  99.5 4.8E-12 1.2E-16   92.9  15.6  124    7-136     1-129 (130)
 15 cd07908 Mn_catalase_like Manga  99.4   6E-11 1.5E-15   86.3  16.4  131    2-136    11-153 (154)
 16 COG2406 Protein distantly rela  99.3   1E-09 2.6E-14   78.8  16.8  135    3-138    16-160 (172)
 17 cd01041 Rubrerythrin Rubreryth  99.2 3.9E-09 9.9E-14   75.2  16.8  129    7-140     4-133 (134)
 18 PRK09448 DNA starvation/statio  98.9 2.5E-07 6.5E-12   64.2  16.5  122    3-125    20-150 (164)
 19 cd01046 Rubrerythrin_like rubr  98.9 4.6E-07 1.2E-11   62.6  16.9  122    4-140     1-122 (123)
 20 pfam02915 Rubrerythrin Rubrery  98.9 4.8E-07 1.2E-11   62.5  16.3  126    8-137     2-137 (137)
 21 cd01043 DPS DPS protein, ferri  98.8 7.2E-07 1.8E-11   61.5  16.3  118    8-125     2-127 (139)
 22 COG0783 Dps DNA-binding ferrit  98.8 1.8E-06 4.7E-11   59.0  16.9  123    3-126    14-144 (156)
 23 COG1633 Uncharacterized conser  98.7 4.1E-06   1E-10   56.9  17.6  133    3-141    23-170 (176)
 24 cd01045 Ferritin_like_AB Uncha  98.6 4.8E-06 1.2E-10   56.4  15.7  124    7-136     1-138 (139)
 25 cd01051 Mn_catalase Manganese   98.6 7.9E-06   2E-10   55.1  16.0  134    2-140    18-155 (156)
 26 COG1592 Rubrerythrin [Energy p  98.4 4.2E-05 1.1E-09   50.7  15.4  127    3-141     3-130 (166)
 27 pfam05067 Mn_catalase Manganes  97.7  0.0036 9.3E-08   38.9  14.6  134    2-141    18-190 (272)
 28 cd01042 DMQH Demethoxyubiquino  97.4  0.0097 2.5E-07   36.4  12.6  117   14-136    10-137 (165)
 29 COG3546 Mn-containing catalase  97.3  0.0076 1.9E-07   37.0  11.1  138    2-145    18-194 (277)
 30 pfam09537 DUF2383 Domain of un  97.1   0.019 4.9E-07   34.5  11.7   98    5-105     2-110 (111)
 31 cd01044 Ferritin_CCC1_N Ferrit  96.6   0.056 1.4E-06   31.7  13.3  115    9-138     3-124 (125)
 32 pfam03232 COQ7 Ubiquinone bios  96.2   0.094 2.4E-06   30.4  13.5  117   14-135    12-141 (171)
 33 COG1633 Uncharacterized conser  95.6    0.12 3.1E-06   29.7   8.4   66   76-144    19-84  (176)
 34 cd07910 MiaE MiaE tRNA-modifyi  95.3    0.23 5.7E-06   28.1  18.3  134    3-146    17-161 (180)
 35 pfam04305 DUF455 Protein of un  95.3    0.23 5.8E-06   28.0  14.0  131    5-138    65-207 (250)
 36 pfam05974 DUF892 Domain of unk  94.7    0.33 8.5E-06   27.0  17.0  132    4-138     5-151 (159)
 37 cd01050 Acyl_ACP_Desat Acyl AC  93.7    0.54 1.4E-05   25.7   8.2  108   34-144    91-209 (297)
 38 PRK13654 magnesium-protoporphy  92.3    0.88 2.3E-05   24.5   9.6  121    4-125    81-202 (351)
 39 pfam03405 FA_desaturase_2 Fatt  91.4     1.1 2.8E-05   23.9   8.4  105   36-141    98-212 (330)
 40 cd07909 YciF YciF bacterial st  91.3     1.1 2.8E-05   23.8  16.9  120    6-128     5-138 (147)
 41 cd01047 ACSF Aerobic Cyclase S  90.9     1.2 3.1E-05   23.6   9.1  121    4-125    63-184 (323)
 42 CHL00185 ycf59 magnesium-proto  90.5     1.3 3.4E-05   23.3  10.3  120    5-125    78-198 (349)
 43 pfam06175 MiaE tRNA-(MS[2]IO[6  90.4     1.4 3.5E-05   23.3  17.8  133    4-146    27-170 (199)
 44 PRK09101 nrdB ribonucleotide-d  80.6     4.4 0.00011   20.2   6.9   81   18-100   205-291 (376)
 45 COG2833 Uncharacterized protei  80.1     4.5 0.00012   20.1  10.7  121    5-131    76-207 (268)
 46 COG3685 Uncharacterized protei  79.1     4.9 0.00013   19.9  15.7  129    5-136    10-152 (167)
 47 PRK13965 ribonucleotide-diphos  78.3     5.2 0.00013   19.8   5.2   82   17-103   175-261 (337)
 48 TIGR02284 TIGR02284 conserved   77.9     5.3 0.00014   19.7   8.5  129    6-140     2-141 (142)
 49 COG2941 CAT5 Ubiquinone biosyn  76.4     5.9 0.00015   19.5  12.6  113   14-133    51-174 (204)
 50 pfam08066 PMC2NT PMC2NT (NUC01  74.9     4.6 0.00012   20.1   3.9   58   34-91     21-79  (91)
 51 PRK09614 nrdF ribonucleotide-d  74.0     6.8 0.00017   19.1   7.8   79   20-102   168-250 (325)
 52 PRK13966 nrdF2 ribonucleotide-  67.5     9.5 0.00024   18.2   5.6   83   19-104   164-249 (324)
 53 TIGR02630 xylose_isom_A xylose  60.1     9.9 0.00025   18.1   3.1   42   34-75    188-233 (437)
 54 COG2996 Predicted RNA-bindinin  54.0      14 0.00037   17.1   3.1   50   43-92    216-269 (287)
 55 PRK07209 ribonucleotide-diphos  53.0      17 0.00044   16.6   6.6   41  100-140   244-284 (391)
 56 pfam10152 DUF2360 Predicted co  39.4      28 0.00071   15.3   4.1   43  114-162     7-49  (147)
 57 cd07911 RNRR2_Rv0233_like Ribo  38.4      29 0.00074   15.2   7.8   38   31-68     73-110 (280)
 58 pfam04518 DUF582 Protein of un  36.7      31 0.00078   15.1   4.0   56    5-60    158-220 (380)
 59 pfam10666 Phage_Gp14 Phage pro  34.5      33 0.00085   14.9   2.6   92   10-107     4-99  (140)
 60 cd01058 AAMH_B Aromatic and Al  33.8      34 0.00088   14.8  16.3  108   35-145   128-256 (304)
 61 pfam04332 DUF475 Protein of un  33.0      35  0.0009   14.7   3.4   65   79-145    48-113 (294)
 62 pfam03202 Lipoprotein_10 Putat  32.8      13 0.00034   17.3   0.2   17  110-126    16-32  (134)
 63 TIGR02858 spore_III_AA stage I  29.0      34 0.00088   14.8   1.7   47   35-81     91-137 (282)
 64 cd01048 Ferritin_like_AB2 Unch  28.6      42  0.0011   14.3  14.9   96    6-108     2-109 (135)
 65 TIGR02146 LysS_fung_arch homoc  28.2      43  0.0011   14.2   2.7   80   13-92     68-157 (355)
 66 pfam02332 Phenol_Hydrox Methan  26.8      45  0.0012   14.1  14.6  105   35-143   102-227 (233)
 67 TIGR02110 PQQ_syn_pqqF coenzym  26.7      36 0.00092   14.7   1.5   54   33-86     43-100 (737)
 68 PTZ00211 ribonucleotide reduct  25.9      47  0.0012   14.0   7.6   60   29-98    186-246 (330)
 69 TIGR01582 FDH-beta formate deh  25.9      47  0.0012   14.0   2.3   21   46-66    191-212 (293)
 70 cd01049 RNRR2 Ribonucleotide R  25.8      47  0.0012   14.0   9.9   63   35-101   176-239 (288)
 71 pfam00268 Ribonuc_red_sm Ribon  23.3      53  0.0013   13.7  10.7   20   35-54    180-199 (281)
 72 COG4445 MiaE Hydroxylase for s  23.3      53  0.0013   13.7  13.7  126    8-144    32-168 (203)
 73 TIGR02024 FtcD glutamate formi  22.2      55  0.0014   13.5   3.3   59   40-98     56-117 (331)
 74 TIGR01924 rsbW_low_gc anti-sig  21.7      35  0.0009   14.7   0.7   17  139-155   108-124 (161)
 75 cd07648 F-BAR_FCHO The F-BAR (  21.7      57  0.0014   13.5  10.3   35   35-69     21-55  (261)
 76 cd00886 MogA_MoaB MogA_MoaB fa  20.6      25 0.00063   15.7  -0.3   39   32-70     88-126 (152)
 77 cd07647 F-BAR_PSTPIP The F-BAR  20.2      61  0.0016   13.3  10.4   91   35-140    21-111 (239)

No 1  
>PRK10304 ferritin; Provisional
Probab=100.00  E-value=0  Score=336.18  Aligned_cols=164  Identities=34%  Similarity=0.628  Sum_probs=161.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCC
Q ss_conf             99899999999999999999999999999815994789999999999999999999999995399714378225720488
Q gi|254780720|r    1 MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAN   80 (164)
Q Consensus         1 ~s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~   80 (164)
                      ||++|.++||+|||.|+.||++|++||+||+..|+||||+||+.+|.||++||++|++||++|||.|.+++|++|+.+|.
T Consensus         2 l~~~l~~~LN~Qin~E~~as~~Ylama~w~~~~~l~G~a~~f~~qa~EE~~Ha~k~~~yl~~rg~~v~l~~I~~P~~~~~   81 (165)
T PRK10304          2 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYS   81 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf             88899999999999999999999999999877799249999999999999999999999996799844499899733407


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             98999999999999999999999999997099889999999999999999999999999995288751699999999965
Q gi|254780720|r   81 DVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKI  160 (164)
Q Consensus        81 ~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~~~glyl~D~~l~~~  160 (164)
                      ++.++|+.+|+||+.||.+|++|+++|.+++|++|.+||+|||+||++||+.+++++++++++|++|.|+|++|++|+++
T Consensus        82 s~~~vf~~al~hE~~VT~~I~~L~~~A~~~~D~~t~~FL~wFv~EQvEEE~~~~~il~~l~~~g~~~~~l~~lD~eL~~~  161 (165)
T PRK10304         82 SLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELSTL  161 (165)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             89999999999999999999999999988488838999999999999999999999999998179974596896888640


Q ss_pred             HCCC
Q ss_conf             3189
Q gi|254780720|r  161 ANKS  164 (164)
Q Consensus       161 ~~~~  164 (164)
                      ..++
T Consensus       162 ~~q~  165 (165)
T PRK10304        162 DTQN  165 (165)
T ss_pred             CCCC
T ss_conf             0479


No 2  
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00  E-value=0  Score=317.57  Aligned_cols=156  Identities=42%  Similarity=0.664  Sum_probs=154.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf             98999999999999999999999999998159947899999999999999999999999953997143782257204889
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAND   81 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~   81 (164)
                      |++|+++||+|||.|++||++|++||+||++.|+||||+||+.+|.|||+||++|++|+++|||+|.+++|++|+.+|.+
T Consensus         1 s~~~~~~LN~qin~El~as~~Yl~ma~~~~~~~l~g~a~ff~~~a~EEr~HA~kl~~yl~~rgg~~~l~~I~~p~~~~~~   80 (156)
T cd01055           1 SEKLEKALNEQINLELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFES   80 (156)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
T ss_conf             97999999999999999999999999997266876899999999999999999999999976997230896898767599


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             8999999999999999999999999997099889999999999999999999999999995288751699999999
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEI  157 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~~~glyl~D~~l  157 (164)
                      +.++|+.+|++|+.||+++++++++|++++|++|.+||+|||+||+++++++++++++++++|++|.|+|+||++|
T Consensus        81 ~~~~~~~al~~E~~vt~~i~~l~~~A~~~~D~~t~~FL~~fl~EQveee~~~~~~l~~l~~~g~~~~gl~~~D~~l  156 (156)
T cd01055          81 LLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLKLAGDDGGGLYMLDKEL  156 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCCC
T ss_conf             9999999999999999999999999988588718999999999999999999999999997179977100106759


No 3  
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=313.58  Aligned_cols=163  Identities=39%  Similarity=0.633  Sum_probs=159.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCC
Q ss_conf             99899999999999999999999999999815994789999999999999999999999995399714378225720488
Q gi|254780720|r    1 MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAN   80 (164)
Q Consensus         1 ~s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~   80 (164)
                      +|.+|.++||+|||.||.||++|++||+||+..|+||+|+||+.||+||+.||++|++|++.||++|.++.|.+|+.+|.
T Consensus         2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~~~   81 (167)
T COG1528           2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCSSESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNKFS   81 (167)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCC
T ss_conf             21899999999999999999999999999866499049999999978999999999999985699862167679866647


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             98999999999999999999999999997099889999999999999999999999999995288751699999999965
Q gi|254780720|r   81 DVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKI  160 (164)
Q Consensus        81 ~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~~~glyl~D~~l~~~  160 (164)
                      ++.++|+.+|+||+.||++|++|+++|.+++|+.|.+||+|||+||++|++.+++|+++++++|++|.|+|++|++|+++
T Consensus        82 s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~~~~~I~d~~~~ag~~~~~l~~~D~~L~~~  161 (167)
T COG1528          82 SLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEKLFKTILDKLELAGNDGEGLYLIDKELKNR  161 (167)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             89999999999999999999999999988164779999999999888899889999999998277755202467889864


Q ss_pred             HCC
Q ss_conf             318
Q gi|254780720|r  161 ANK  163 (164)
Q Consensus       161 ~~~  163 (164)
                      +..
T Consensus       162 ~~~  164 (167)
T COG1528         162 ASS  164 (167)
T ss_pred             CCC
T ss_conf             036


No 4  
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00  E-value=0  Score=303.24  Aligned_cols=154  Identities=25%  Similarity=0.369  Sum_probs=148.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC-C
Q ss_conf             989999999999999999999999999981--5994789999999999999999999999995399714378225720-4
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAA--SHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVI-S   78 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~--~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~-~   78 (164)
                      |++|+++||+|||.|+.|||+|++||+||+  +.++|||++||+.+|.|||+||++|++|+++|||+|++++|++|+. .
T Consensus         1 S~~~~~alN~qIn~El~as~~Yl~ma~~f~~~~~~l~Gfa~ff~~~a~EE~~Ha~~l~~Yl~~RGg~v~~~~i~~p~~~~   80 (160)
T cd00904           1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE   80 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
T ss_conf             97999999999999999999999999996514567476999999999999999999999999779923348867888877


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHH
Q ss_conf             8898999999999999999999999999997099889999999-99999999999999999999528--87516999999
Q gi|254780720|r   79 ANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVKEQHEEMALFRRILDKIRLIG--SGPHSRYMFDL  155 (164)
Q Consensus        79 ~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~-fl~EQ~eee~~~~~ll~~l~~~g--~~~~glyl~D~  155 (164)
                      |.++.++|+.+|++|+.||+++++|+++|.+++|+.|.+||+| ||+||+++++++++++++++++|  +.|+|+|+|||
T Consensus        81 ~~s~~~~~~~al~~Ek~vt~~i~~L~~~A~~~~D~~~~~fLe~~Fv~eQ~ee~~~~~~~l~~l~~~g~~~~glg~ylfDk  160 (160)
T cd00904          81 WGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLESHFLDEQVKEIKQVGDILTNLERLNGQQAGSGEYLFDR  160 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf             79889999999999999999999999999886997599887165379999999999999999998089998703410086


No 5  
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00  E-value=5.2e-44  Score=287.18  Aligned_cols=155  Identities=23%  Similarity=0.306  Sum_probs=148.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CC
Q ss_conf             989999999999999999999999999981--599478999999999999999999999999539971437822572-04
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAA--SHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPV-IS   78 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~--~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~-~~   78 (164)
                      +++|+++||+||+.|+.|||.|++||+||+  ++++|||++||+.+|+|||+||.+|++|+++|||+|.+++|++|+ ..
T Consensus         1 ~~~~e~aln~qi~~El~asy~Yl~ma~~f~~~~~~l~Gfa~~f~~~s~Ee~~ha~kl~~Yl~~RG~~v~~~~i~~p~~~~   80 (161)
T cd01056           1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE   80 (161)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
T ss_conf             96899999999999999999999999986713578576999999999999999999999999869920258868887777


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHH
Q ss_conf             8898999999999999999999999999997099889999999-9999999999999999999952887--516999999
Q gi|254780720|r   79 ANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVKEQHEEMALFRRILDKIRLIGSG--PHSRYMFDL  155 (164)
Q Consensus        79 ~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~-fl~EQ~eee~~~~~ll~~l~~~g~~--~~glyl~D~  155 (164)
                      |.++.++|+.||++|+.||+++++|+++|.+++|++|.+||+| ||.||+++++++++++++++++|++  |+|+|+||+
T Consensus        81 ~~s~l~~~~~al~~Ek~vt~~i~~L~~~A~~~~D~~~~~fLe~~fi~eQ~e~~~~~~~~l~~l~~~~~~~~glg~ylfDk  160 (161)
T cd01056          81 WGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRVGKPQSGLGEYLFDK  160 (161)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             79999999999999999999999999999876996699999888789999999999999999998479986500003488


Q ss_pred             H
Q ss_conf             9
Q gi|254780720|r  156 E  156 (164)
Q Consensus       156 ~  156 (164)
                      .
T Consensus       161 ~  161 (161)
T cd01056         161 Y  161 (161)
T ss_pred             C
T ss_conf             9


No 6  
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=100.00  E-value=5.7e-31  Score=207.91  Aligned_cols=143  Identities=17%  Similarity=0.181  Sum_probs=135.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf             98999999999999999999999999998159947899999999999999999999999953997143782257204889
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAND   81 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~   81 (164)
                      +++|.++||++++.|++|+++|+.+|.+|+++|++++|++|+.+|.|||+||.++++||+++||.|++++.+.|. .++|
T Consensus         3 ~~kvi~~LN~~L~~El~A~~qY~~~a~~~~~~g~~~la~~~~~~a~eE~~HA~~l~~rIl~LgG~P~~~~~~~~~-~~~~   81 (153)
T cd00907           3 DPKVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLR-IGED   81 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC
T ss_conf             689999999999999999999999999998849798999999998999999999999999839998766667785-7877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             8999999999999999999999999997099889999999999999999999999999995288
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGS  145 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~  145 (164)
                      +.++|+.+++.|..++..|++++..|.+.+|++|+.+++||+.++.++..++.+.++.++++|.
T Consensus        82 v~e~L~~dl~~E~~ai~~y~e~i~~a~~~~D~~t~~ll~~il~dEeeH~~~le~~L~li~~~G~  145 (153)
T cd00907          82 VPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLIDKMGL  145 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999877898989999999999999999999999999999778


No 7  
>KOG2332 consensus
Probab=99.98  E-value=9.3e-32  Score=212.70  Aligned_cols=158  Identities=22%  Similarity=0.335  Sum_probs=149.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CC
Q ss_conf             989999999999999999999999999981--599478999999999999999999999999539971437822572-04
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAA--SHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPV-IS   78 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~--~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~-~~   78 (164)
                      ++..+.++|.|||.|+++||.|++||+||+  ++.++||++||..+|.|||+||.+++.|+++|||.+++++|.+|. .+
T Consensus        14 ~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~l~~i~~P~~~e   93 (178)
T KOG2332          14 HDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIELQDIKKPELDE   93 (178)
T ss_pred             HHHCCCHHHHHCCCHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf             00020012011040220014554135326811023020666624430202225999999998717853135444554203


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHH
Q ss_conf             8898999999999999999999999999997099889999999-999999999999999999995288--7516999999
Q gi|254780720|r   79 ANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQW-FVKEQHEEMALFRRILDKIRLIGS--GPHSRYMFDL  155 (164)
Q Consensus        79 ~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~-fl~EQ~eee~~~~~ll~~l~~~g~--~~~glyl~D~  155 (164)
                      |.+-..+++.|+.+|+.|+.++.+|+.+|.+.+|++..+|++. |+.||++..+++++.+++++++|.  .|+|.|+||+
T Consensus        94 w~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQVksIkeL~~~~~~l~k~~~~~~g~~~~lfd~  173 (178)
T KOG2332          94 WGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQVKSIKELSDYLANLKKMGAPDGGLGEYLFDK  173 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             77689998889999999879999999999864980788999984009999999999998876675057888702431466


Q ss_pred             HHHH
Q ss_conf             9996
Q gi|254780720|r  156 EIEK  159 (164)
Q Consensus       156 ~l~~  159 (164)
                      .+..
T Consensus       174 ~~~~  177 (178)
T KOG2332         174 YLLS  177 (178)
T ss_pred             HHHC
T ss_conf             5405


No 8  
>PRK10635 bacterioferritin, iron storage and detoxification protein; Provisional
Probab=99.96  E-value=9.4e-28  Score=188.36  Aligned_cols=147  Identities=16%  Similarity=0.130  Sum_probs=132.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf             98999999999999999999999999998159947899999999999999999999999953997143782257204889
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAND   81 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~   81 (164)
                      +++|...||+.+..|++|++||+.+|..|++||++.+++.|+++|.|||.||.++++||+++||.|++++.+++. ...+
T Consensus         4 ~~~vi~~LN~~L~~ELtAinQYf~harm~~~wG~~~La~~~~~esieEm~HAd~LieRILfLeG~Pn~~~l~~~~-ig~~   82 (158)
T PRK10635          4 DVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLG-IGED   82 (158)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCC
T ss_conf             789999999999999999999999999987389499999999998999999999999999828996601077677-6868


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             89999999999999999999999999970998899999999999999999999999999952887516999
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSGPHSRYM  152 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~~~glyl  152 (164)
                      +.++|+.+++.|..++..|++.+..|++.+|++|++++..++.+   |+.++.|+-+++.+++.-|...|+
T Consensus        83 v~Eml~~Dl~~E~~ai~~y~~ai~~ce~~~D~~sr~ll~~iL~d---EEeH~dwlEtQl~lI~~~G~~nYl  150 (158)
T PRK10635         83 VEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILAD---EEGHIDWLETELDLIGKLGLQNYL  150 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999978999999999999999999885889789999999997---888999999999999997689999


No 9  
>pfam00210 Ferritin Ferritin-like domain. This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.
Probab=99.95  E-value=3.1e-26  Score=179.17  Aligned_cols=138  Identities=30%  Similarity=0.436  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC----CCCCCCC
Q ss_conf             999999999999999999999999815994789999999999999999999999995399714378225----7204889
Q gi|254780720|r    6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEA----PVISAND   81 (164)
Q Consensus         6 ~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~----p~~~~~~   81 (164)
                      .++||++|+.|+.++++|++++.+|.+.+++|++++|+.++.++++||+++++||+.|||.|..+.++.    |+..+.+
T Consensus         1 ~~~Ln~~l~~e~~a~~~y~~~~~~~~g~~f~~l~~~f~~~~~ee~~had~laeri~~lgg~p~~~~~~~~~~~~~~~~~~   80 (142)
T pfam00210         1 IEALNEQLADELTASYQYLQMAWYFDGPGLPGLAEFFDEQAEEEREHADKLAERILALGGKPVLTPVELLKIEPPDEFGS   80 (142)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             96989999999999999999999874998189999899999999999999999999859988876112223678777899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             89999999999999999999999999970998899999999999999999999999999952
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLI  143 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~  143 (164)
                      +.++++.+++.|+.++..|+++++.|.+.+|+.|.+|++||+.+|.+++..++.++++++++
T Consensus        81 ~~~~l~~~l~~e~~~~~~~~~~~~~a~~~~D~~t~~ll~~~l~e~~~~~~~l~~~L~~~~~~  142 (142)
T pfam00210        81 VLEALEAALEHEKEVTESLRELIELAEEEGDYATADFLEWFLEEQEEHEWMLEALLEKLKRI  142 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999999999823758899999999999999999999999986639


No 10 
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.93  E-value=5.2e-24  Score=165.60  Aligned_cols=147  Identities=16%  Similarity=0.198  Sum_probs=129.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf             98999999999999999999999999998159947899999999999999999999999953997143782257204889
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAND   81 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~   81 (164)
                      .++|...||+++..|+.|.++|+.+|.++.+||+..++++++++|.+||.||++++++|++++|.|++++.++ -....+
T Consensus         4 ~~~Vi~~LN~~L~~EL~ainQYflHsrM~~~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~-l~iG~t   82 (157)
T COG2193           4 DPKVIRLLNEALGLELAAINQYFLHSRMYKNWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGK-LRIGET   82 (157)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCC
T ss_conf             1899999999999899999999999999816474789999999879999989999999994168987230333-225887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             89999999999999999999999999970998899999999999999999999999999952887516999
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSGPHSRYM  152 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~~~glyl  152 (164)
                      +.++++.+|.+|..+...+.+.+..|.+.+||+|++.+..++..+-++.+++.   +++.+++.-|...|+
T Consensus        83 v~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~iL~deEEHid~Le---tqL~li~~~G~~nY~  150 (157)
T COG2193          83 VKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLEEILADEEEHIDWLE---TQLDLIAKIGEENYL  150 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf             79999978898899999999999999860563389999999816077799999---999999997677799


No 11 
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like).  DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA.  This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers,  each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.92  E-value=4.9e-23  Score=159.70  Aligned_cols=134  Identities=19%  Similarity=0.218  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC---------
Q ss_conf             89999999999999999999999999981599478999999999999999999999999539971437822---------
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIE---------   73 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~---------   73 (164)
                      +++.+.||+.+..|++|+++|+.+|.+|.++++++++++|+.+|.|||.||.+++++|+++||.|.+++-.         
T Consensus         5 ~~vIe~LN~aL~~El~ai~qY~~~a~~~~g~~~~~l~~~~~e~a~eE~~HA~~laeRI~~LgG~P~~~~~~~~~~~~~~~   84 (148)
T cd01052           5 DELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKC   84 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
T ss_conf             99999999999999999999999999982888068999999998999999999999999859958988889999803656


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -5720488989999999999999999999999999970998899999999999999999999999
Q gi|254780720|r   74 -APVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRIL  137 (164)
Q Consensus        74 -~p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll  137 (164)
                       .++.+..++.++++.+++.|+.++..|+++++.|.. +|++|++++..++.+..++..++.+++
T Consensus        85 ~~~~~~~~dv~emL~~~l~~E~~AI~~Y~e~i~~~~~-~D~~t~~l~~~IL~dEeeH~~~le~lL  148 (148)
T cd01052          85 GYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLALAILNEEIEHEEDLEELL  148 (148)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6788887779999999999999999999999999878-998999999999999998999999769


No 12 
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.82  E-value=2.9e-18  Score=130.74  Aligned_cols=135  Identities=17%  Similarity=0.239  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC-------C-
Q ss_conf             89999999999999999999999999981599478999999999999999999999999539971437822-------5-
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIE-------A-   74 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~-------~-   74 (164)
                      +++.++||+.+..|+.|.|+|..++..+.+..-++++..|...+.||+.||+++.++|.++||.|...+-.       . 
T Consensus        17 d~lI~lLn~A~A~E~~ayy~Y~~~~~~~~G~~~e~iae~~e~aa~Ee~~HAd~la~RI~QLGG~pp~dp~~~~~~s~c~~   96 (184)
T PRK13456         17 DKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGSLPRDMKEFHDISACPP   96 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
T ss_conf             99999999999999999999999999973635088999999999999999999999999809989999799998826985


Q ss_pred             --CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --7204889899999999999999999999999999709988999999999999999999999999
Q gi|254780720|r   75 --PVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILD  138 (164)
Q Consensus        75 --p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~  138 (164)
                        .+.+++++.++++.++..|+.++..|+++++... .+|++|++++..+|.+.++++++|.+++.
T Consensus        97 ~y~P~~~tDl~~ml~~nl~AErcAI~~Y~eii~~t~-gKDP~T~~la~~IL~dE~EHe~~f~ell~  161 (184)
T PRK13456         97 AYLPENPTDIKEILKVLLEAEQCAVRQYTEICNMTA-GKDHRTYDLALAILNEEIEHESWFSEFLG  161 (184)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             468999632999999999999999999999999975-89941999999999999998999999975


No 13 
>TIGR00754 bfr bacterioferritin; InterPro: IPR002024 Bacterioferritin (BFR; also known as cytochrome b1 or cytochrome b557) ,  of Escherichia coli is an iron-storage protein consisting of 24 identical subunits that pack together to form a highly symmetrical, nearly spherical shell surrounding a central cavity of about 8 nm diameter , . X-ray crystallographic studies have revealed a close structural similarity between BFR and the ferritins, a family of iron-storage proteins found in both eukaryotes and bacteria . Common to both ferritins and BFRs is a capacity to store large quantities of iron within their hollow interior, in the form of a hydrated ferric oxide mineral containing variable amounts of phosphate anion. However, a major difference between them is that BFR contains up 12 b-type haem groups, while ferritins, as isolated, do not contain haem. The building block for the BFR shell is a protein dimer (subunits A and B) binding the single haem group. Each subunit consists of four nearly parallel alpha-helices. The haem is bound symmetrically to subunits A and B by Met(A)-52 and Met(B)-52 residues . Each subunit includes a binuclear metal-binding site linking together the four major helices of the subunit, which has been identified as the ferroxidase centre of BFR . BFR mutants with Met-52 replaced are haem-free, but appear to be correctly assembled and are capable of accumulating iron .; GO: 0008199 ferric iron binding, 0006826 iron ion transport, 0006879 cellular iron ion homeostasis.
Probab=99.59  E-value=5.9e-14  Score=104.53  Aligned_cols=147  Identities=16%  Similarity=0.164  Sum_probs=131.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf             98999999999999999999999999998159947899999999999999999999999953997143782257204889
Q gi|254780720|r    2 TNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAND   81 (164)
Q Consensus         2 s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~   81 (164)
                      +..+...||+++..|+.|.++|+.++..|++||+..++.+-++.+.+++.||..++++++.+.|.|.++.+.+... ..+
T Consensus         4 ~~~~~~~ln~~l~~~l~~~n~yflh~~~~~~Wg~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~g~pn~~~~g~l~~-g~~   82 (157)
T TIGR00754         4 DPDVLQHLNKLLGNELTAINQYFLHARMCKNWGLKELADHEYHESIDEMKHADELIERILFLEGLPNLQDLGKLLI-GET   82 (157)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCH
T ss_conf             3789999999887677788788887665410251456666777668887667889988987615754344545430-311


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             89999999999999999999999999970998899999999999999999999999999952887516999
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSGPHSRYM  152 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~~~glyl  152 (164)
                      +.+++...+..+..+...+...+..|++..|+.+++.+..++.+   ++.+++++-+++.++...|...|+
T Consensus        83 ~~e~~~~dl~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~---~e~~~dwle~~~~l~~~~g~~~y~  150 (157)
T TIGR00754        83 VPELLEADLALELDVLDGLKEGIAYAEEVRDYVSRDLLEEILED---EEEHIDWLETQLWLIDKLGLENYL  150 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             58875212344343210245667765444456779999999732---223456778889998752167788


No 14 
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.48  E-value=4.8e-12  Score=92.92  Aligned_cols=124  Identities=27%  Similarity=0.322  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC-----CCCCCCCCCC
Q ss_conf             99999999999999999999999815994789999999999999999999999995399714378-----2257204889
Q gi|254780720|r    7 RVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSS-----IEAPVISAND   81 (164)
Q Consensus         7 ~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~-----i~~p~~~~~~   81 (164)
                      +.||..++.|+.|+..|..++..+.   .|.+.+.|+..+.+|+.|+..+.+++..+||.|..+.     ...+.....+
T Consensus         1 ~~L~~~l~~E~~a~~~Y~~~a~~~~---~~~~~~~~~~~a~eE~~H~~~l~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~   77 (130)
T cd00657           1 RLLNDALAGEYAAIIAYGQLAARAP---DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSDD   77 (130)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf             9888999999999999999998889---9779999999999999999999999998089888875033330001458999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999999999999999997099889999999999999999999999
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRI  136 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~l  136 (164)
                      +.+++..++..|..+...|.+++..+   .|+.+..++..++.+...+...+..+
T Consensus        78 ~~~~l~~~~~~E~~a~~~y~~~~~~~---~d~~~~~~~~~i~~dE~~H~~~~~~~  129 (130)
T cd00657          78 PAEALRAALEVEARAIAAYRELIEQA---DDPELRRLLERILADEQRHAAWFRKL  129 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999872---88999999999999999999999966


No 15 
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum.  Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.39  E-value=6e-11  Score=86.26  Aligned_cols=131  Identities=16%  Similarity=0.203  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCC---
Q ss_conf             9899999999999---9999999999999998159947899999999999999999999999953997143782257---
Q gi|254780720|r    2 TNTRDRVLNELMN---MEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAP---   75 (164)
Q Consensus         2 s~~~~~~Ln~qi~---~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p---   75 (164)
                      +..+.+.|-+|+.   .|++|+.+|+..+..+++ +++.+++.|.+-|.|||.|.+.+...|..+||.|........   
T Consensus        11 np~~A~~l~~~~gG~~gElsA~~qYl~q~~~~~~-~~~~i~~ll~dIa~eEm~HlE~i~~~I~~Lgg~p~~~~~~~~~~~   89 (154)
T cd07908          11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISEE-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFT   89 (154)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf             9899999999848961689999999998970789-847999999999999999999999999991899841303688777


Q ss_pred             ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------2048898999999999999999999999999997099889999999999999999999999
Q gi|254780720|r   76 ------VISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRI  136 (164)
Q Consensus        76 ------~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~l  136 (164)
                            .....++.+.+..+++.|+.....|.+++..+   +|+.+.+.|+.++.....|...|+..
T Consensus        90 ~wt~~yv~~~~~~~~~L~~diaaE~~A~~~Y~~~~~~i---~D~~vk~~L~~ii~dE~~H~~~F~e~  153 (154)
T cd07908          90 YWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI---KDPYIRALLNRIILDEKLHIKILEEL  153 (154)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             48875558899999999999999999999999999976---88879999999999999999999975


No 16 
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=99.27  E-value=1e-09  Score=78.80  Aligned_cols=135  Identities=16%  Similarity=0.218  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE--------ECCCCC
Q ss_conf             899999999999999999999999999815994789999999999999999999999995399714--------378225
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK--------FSSIEA   74 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~--------~~~i~~   74 (164)
                      +++.++|-..-..|+++.|.|+..+....+..-.|...+...--.|-+.|+..+..+|.+.||.|.        ++.-+.
T Consensus        16 ~kli~~Llka~AaE~tt~YYYtilr~~l~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC~~   95 (172)
T COG2406          16 DKLIELLLKAAAAEWTTYYYYTILRYALKGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGCKP   95 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
T ss_conf             99999999999999999999999999980321578999999999999989999999999828998266999876417998


Q ss_pred             --CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --7204889899999999999999999999999999709988999999999999999999999999
Q gi|254780720|r   75 --PVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILD  138 (164)
Q Consensus        75 --p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~  138 (164)
                        .|.++.++.+++..+++.|+.+++.|.++++.... +|+.|.++-+.+++|.++++.++..++.
T Consensus        96 a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~G-kDprTyeLa~~IL~eEi~hr~~~~~ll~  160 (172)
T COG2406          96 AYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTAG-KDPRTYELAEAILREEIEHRTWFLELLG  160 (172)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8999996578999999999999999999999731048-9943599999999999999999999813


No 17 
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.20  E-value=3.9e-09  Score=75.24  Aligned_cols=129  Identities=18%  Similarity=0.178  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHH
Q ss_conf             99999999999999999999999815994789999999999999999999999995399714378225720488989999
Q gi|254780720|r    7 RVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLF   86 (164)
Q Consensus         7 ~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~   86 (164)
                      +-|-.....|-.|...|+.+|..++..|++.++..|+.-|..|..||..+++.+...++.+.     .|+....+..+.|
T Consensus         4 ~NL~~AfaGEs~A~~rY~~fA~~A~~eG~~~iA~lF~~tA~~E~~HA~~~~~~l~~~~~~~~-----~~~~~~~~t~~NL   78 (134)
T cd01041           4 KNLLAAFAGESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIGIGDTLENL   78 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCCCCCCCHHHHH
T ss_conf             89999984789999999999999988677999999999999999999999999734576655-----5555646599999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999-9999999999999970998899999999999999999999999999
Q gi|254780720|r   87 SLMYEHEN-KVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKI  140 (164)
Q Consensus        87 ~~al~~E~-~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l  140 (164)
                      +.+.+.|. +.+..|-...+.|+++++......+.+..+-...+.+.+..+++.+
T Consensus        79 ~~Ai~GE~~E~~~mYP~fa~~A~~EG~~~aA~~F~~i~~~E~~H~~~y~~~l~~l  133 (134)
T cd01041          79 KAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALENL  133 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9998513778999719999999886749999999999999999999999998745


No 18 
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.92  E-value=2.5e-07  Score=64.21  Aligned_cols=122  Identities=13%  Similarity=0.115  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE--------CCCC
Q ss_conf             899999999999999999999999999-8159947899999999999999999999999953997143--------7822
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAW-AASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKF--------SSIE   73 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~-~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~--------~~i~   73 (164)
                      +++.+.||..+..-..-...+ ..+.| ..+.+|-.+-.+|..+..+=.++++.+.+||..+||.|.-        +.++
T Consensus        20 ~~~v~~Ln~~LAd~~~L~~k~-~~~HWnV~G~~F~~lH~~fee~y~e~~~~iD~iAERi~~LG~~p~~s~~~~~~~s~i~   98 (164)
T PRK09448         20 KATIELLNQQLAQFIDLSLIT-KQAHWNMKGANFIAVHEMLDGFRTALEDHLDTVAERAVQLGGTALGTTQVVASKTPLK   98 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
T ss_conf             999999999999999999998-6377162484699999979999999999889999999986999998999999778798


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             5720488989999999999999999999999999970998899999999999
Q gi|254780720|r   74 APVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKE  125 (164)
Q Consensus        74 ~p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~E  125 (164)
                      ..+....+..++++..++.-..+...+++.++.|.+.+|++|.+++..++..
T Consensus        99 e~~~~~~~~~~~l~~l~~~~~~~~~~~r~~i~~a~e~~D~~T~dll~~~~~~  150 (164)
T PRK09448         99 SYPLDIHNVQDHLKALADRYAIVANDVRKAIDEADEAGDADTADIFTAASRD  150 (164)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             7789999999999999999999999999999998877898899999999999


No 19 
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=98.89  E-value=4.6e-07  Score=62.63  Aligned_cols=122  Identities=20%  Similarity=0.220  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHH
Q ss_conf             99999999999999999999999999815994789999999999999999999999995399714378225720488989
Q gi|254780720|r    4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVE   83 (164)
Q Consensus         4 ~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~   83 (164)
                      ++++-|.....-|-++...|+.+|...+..|||.+|..|+.-|..|..||..+.+.   .|+.+            .|..
T Consensus         1 ~~E~nL~~aFaGESqA~~kY~~~A~~A~keGy~~IA~~F~~tA~~E~~HA~~~~~~---~g~~~------------~~t~   65 (123)
T cd01046           1 DLEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAEL---LGKVS------------EDTK   65 (123)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCC------------CCHH
T ss_conf             98879999983679999999999999988584999999999999899999999987---39998------------6699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999970998899999999999999999999999999
Q gi|254780720|r   84 GLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKI  140 (164)
Q Consensus        84 e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l  140 (164)
                      +-++.+.+-|...+..+....+.|++++.....+++....+-.-.+.+.+..+|++.
T Consensus        66 eNL~~a~~GE~~e~~~~~~~a~~A~eEGf~eia~~f~~~a~~E~~H~~r~~~lLery  122 (123)
T cd01046          66 ENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERY  122 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999975167886059999999887879999999999999999999999998764


No 20 
>pfam02915 Rubrerythrin Rubrerythrin. This domain has a ferritin-like fold.
Probab=98.87  E-value=4.8e-07  Score=62.52  Aligned_cols=126  Identities=18%  Similarity=0.175  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC-------CCC---
Q ss_conf             9999999999999999999999815994789999999999999999999999995399714378225-------720---
Q gi|254780720|r    8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEA-------PVI---   77 (164)
Q Consensus         8 ~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~-------p~~---   77 (164)
                      .|...|..|..|...|..+|....+.| |.+++.|+.-|.+|..|+..+.+.+..+++....+....       |..   
T Consensus         2 ~L~~Ai~~E~~a~~~Y~~~A~~a~~~g-~~i~~~F~~lA~~E~~Ha~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T pfam02915         2 ILEYAIAGESSARRRYKELAEKAKGEG-PQIAELFEEMAEEERRHAGFLNKLLKDLFPGLEPVILKEHVEYTFFPVADEL   80 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf             699999709999999999999997848-8999999999999999999999998763466563022443111113556363


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             488989999999999999999999999999970998899999999999999999999999
Q gi|254780720|r   78 SANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRIL  137 (164)
Q Consensus        78 ~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll  137 (164)
                      .-.++.++++.++..|+.....|.   .+|...+|..+..++.++......|.+.+..++
T Consensus        81 ~~~nl~~a~~~a~~~e~~~y~~y~---~~A~~~~~~~~~~~f~~la~~E~~H~~~f~~ll  137 (137)
T pfam02915        81 TRENLKEAIEGAMLEEKEAYPFYI---EIAEKEGEEEARRLFEDLAEAEKRHEERFRKLL  137 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             663399999999999999999999---999887788999999999999999999999769


No 21 
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=98.83  E-value=7.2e-07  Score=61.47  Aligned_cols=118  Identities=17%  Similarity=0.139  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE--------ECCCCCCCCCC
Q ss_conf             9999999999999999999999815994789999999999999999999999995399714--------37822572048
Q gi|254780720|r    8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK--------FSSIEAPVISA   79 (164)
Q Consensus         8 ~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~--------~~~i~~p~~~~   79 (164)
                      .||..+..-+.-...+-.+.=...+.++..+-.+|..+..+-.++.+.+.++|..+||.|.        .+.++.++...
T Consensus         2 ~Ln~~lA~~~~l~~k~~~~HWnv~G~~F~~lH~~~ee~y~~~~~~~D~iAERi~~lG~~p~~~~~~~~~~s~i~e~~~~~   81 (139)
T cd01043           2 ALNQLLADLYVLYLKLKNYHWNVKGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPAGV   81 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf             58899988999999984010001787789999999999999999999999999986999997799999768898778999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             8989999999999999999999999999970998899999999999
Q gi|254780720|r   80 NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKE  125 (164)
Q Consensus        80 ~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~E  125 (164)
                      .+..++++..++.-..+...++++++.|.+.+|++|.+++..++.+
T Consensus        82 ~~~~~m~~~l~~~~~~~~~~~r~~~~~a~~~~D~~t~dll~~~~~~  127 (139)
T cd01043          82 LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLTEIIRE  127 (139)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999998777889899999999999


No 22 
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=98.78  E-value=1.8e-06  Score=58.97  Aligned_cols=123  Identities=19%  Similarity=0.096  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE--------ECCCCC
Q ss_conf             899999999999999999999999999815994789999999999999999999999995399714--------378225
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK--------FSSIEA   74 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~--------~~~i~~   74 (164)
                      .++.+.||.++..=.......-.+.=...+-++--+-.+|..+..+-..|.+.+.+|+..+||.|.        .+.++.
T Consensus        14 ~~~~~~Ln~~lAd~~~Ly~k~~~~HWnV~G~~F~~lHe~~ee~y~~l~~~~DeiAERi~~LGg~p~~t~~~~~~~s~ike   93 (156)
T COG0783          14 KKIAEALNQLLADLYVLYLKTHNYHWNVKGPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSIKE   93 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
T ss_conf             99999999999999999999752341301865999999999999999999899999999859999523999998687754


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             7204889899999999999999999999999999709988999999999999
Q gi|254780720|r   75 PVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQ  126 (164)
Q Consensus        75 p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ  126 (164)
                      .+.+ .++.++++...+--..+++.+++.+++|.+.+|..|.+++..++.+.
T Consensus        94 ~~~~-~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~~~~~~~  144 (156)
T COG0783          94 EPGD-YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLTDIIREL  144 (156)
T ss_pred             CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             6899-99999999999999999999999987630048863799999999999


No 23 
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.74  E-value=4.1e-06  Score=56.87  Aligned_cols=133  Identities=11%  Similarity=0.138  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-------------E
Q ss_conf             899999999999999999999999999815994789999999999999999999999995399714-------------3
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK-------------F   69 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~-------------~   69 (164)
                      ..+.++|+..|..|..|..+|..+|....+-   -+.+.|..-|.+|++|...|-+.+..+++.+.             +
T Consensus        23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~---~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~   99 (176)
T COG1633          23 LSIEELLAIAIRGELEAIKFYEELAERIEDE---EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEIL   99 (176)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHC
T ss_conf             1199999999997999999999999765877---6999999999999999999999999866775430221010122322


Q ss_pred             CCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78225--7204889899999999999999999999999999709988999999999999999999999999999
Q gi|254780720|r   70 SSIEA--PVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIR  141 (164)
Q Consensus        70 ~~i~~--p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~  141 (164)
                      +....  +.....++.+.+..+...|+.....|..+....   .|.....++.++++..-.+...+...++.+-
T Consensus       100 ~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~---~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~  170 (176)
T COG1633         100 EYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDEL---VNEEAKKLFKTIADDEKGHASGLLSLYNRLT  170 (176)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4467662134642288999999999998999999999973---6788999999999999889999999999774


No 24 
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB).  This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown.  This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium.  Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.64  E-value=4.8e-06  Score=56.44  Aligned_cols=124  Identities=20%  Similarity=0.221  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE--ECCCC-------CC--
Q ss_conf             99999999999999999999999815994789999999999999999999999995399714--37822-------57--
Q gi|254780720|r    7 RVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK--FSSIE-------AP--   75 (164)
Q Consensus         7 ~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~--~~~i~-------~p--   75 (164)
                      ++|.-.|..|-.+.-+|..+|..+.+   |+..+.|..-|.+|..|...|.+......+.+.  .+...       .|  
T Consensus         1 eil~~Ai~~E~~~~~fY~~~a~~~~~---~~~k~~f~~LA~eE~~H~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (139)
T cd01045           1 EILALAIKMEEEAAEFYLELAEKAKD---PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEF   77 (139)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHH
T ss_conf             99999999899999999999987798---899999999999999999999999865137777731034431000000668


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---2048898999999999999999999999999997099889999999999999999999999
Q gi|254780720|r   76 ---VISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRI  136 (164)
Q Consensus        76 ---~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~l  136 (164)
                         .....++.++++.|+..|+.....|..+...+   .|..+..++.++..+...|...+..+
T Consensus        78 ~~~~~~~~~~~~~l~~Ai~~E~~a~~fY~~la~~~---~d~~~r~l~~~La~eE~~H~~~L~~~  138 (139)
T cd01045          78 KKALESLMDPLEALRLAIEIEKDAIEFYEELAEKA---EDPEVKKLFEELAEEERGHLRLLEEL  138 (139)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88630359999999999999999999999998768---99999999999999999999999976


No 25 
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.61  E-value=7.9e-06  Score=55.13  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=104.8

Q ss_pred             CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC-CCCC
Q ss_conf             9899999999999---99999999999999981599478999999999999999999999999539971437822-5720
Q gi|254780720|r    2 TNTRDRVLNELMN---MEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIE-APVI   77 (164)
Q Consensus         2 s~~~~~~Ln~qi~---~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~-~p~~   77 (164)
                      +....++|.+|+.   .|++|+.+|+..+.-+.  ..+.+...+.+-+.||+.|.+.+..-|..++..+.-.+=. .-..
T Consensus        18 np~~A~~l~e~~GG~~GElsa~~qYl~Q~~~~~--~~~~~~dll~dI~teEl~HlEml~t~I~~L~~ds~G~pWt~~yv~   95 (156)
T cd01051          18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR--EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYIQ   95 (156)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             989999999986897248999999999886046--777799999999999999999999999997168899989736870


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             488989999999999999999999999999970998899999999999999999999999999
Q gi|254780720|r   78 SANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKI  140 (164)
Q Consensus        78 ~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l  140 (164)
                      ...++...+...++.|......|.+++...   +|+...+.|...+...+-+..-+...+..+
T Consensus        96 ~~gdl~~dL~~niaaE~~Ar~~y~rl~~~~---dDp~v~~~L~fL~~rE~~H~~~f~~ale~l  155 (156)
T cd01051          96 SSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLSFLLVREIVHQNAFGKALESL  155 (156)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             689799999989999999999999999854---981099999999998899999999999972


No 26 
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=98.41  E-value=4.2e-05  Score=50.71  Aligned_cols=127  Identities=18%  Similarity=0.145  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCH
Q ss_conf             89999999999999999999999999981599478999999999999999999999999539971437822572048898
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDV   82 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~   82 (164)
                      ...++-|-+...-|-.|...|+.||...+..|+|.+|+.|+..|.+|..||..+.+-+...+            ....+.
T Consensus         3 ~~t~~~L~~aF~GEs~a~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~------------~~~~~~   70 (166)
T COG1592           3 METEENLRKAFAGESMAVMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL------------LVLGDT   70 (166)
T ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------CCCCCH
T ss_conf             13899999996310999999999999999877889999999999999999999999963000------------122638


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999-999999999999709988999999999999999999999999999
Q gi|254780720|r   83 EGLFSLMYEHENKV-TIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIR  141 (164)
Q Consensus        83 ~e~~~~al~~E~~v-t~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~  141 (164)
                      .+-++.+.+-|..- +..+......|...++-.....+.+...-.-.+...+..+++.++
T Consensus        71 ~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~  130 (166)
T COG1592          71 RENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFRAAAKAEKRHAEMFRGLLERLE  130 (166)
T ss_pred             HHHHHHHHCCCHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999986610778886768999999858089999999999899998999999998660


No 27 
>pfam05067 Mn_catalase Manganese containing catalase. Catalases are important antioxidant metalloenzymes that catalyse disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.
Probab=97.74  E-value=0.0036  Score=38.94  Aligned_cols=134  Identities=16%  Similarity=0.206  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC--------
Q ss_conf             98999999999999---9999999999999981599478999999999999999999999999539971437--------
Q gi|254780720|r    2 TNTRDRVLNELMNM---EYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFS--------   70 (164)
Q Consensus         2 s~~~~~~Ln~qi~~---El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~--------   70 (164)
                      +....++|.+|+.-   |+.++.+|+..+.-|.+.+.   ...+...+.||+.|.+.+..-|..+-......        
T Consensus        18 DP~~A~~lqeq~GG~~GElsaamqYl~Q~~~~r~~~~---kdLL~dI~tEEl~HvEmvat~I~~Ll~ga~~~~~~~a~~~   94 (272)
T pfam05067        18 DPVLAKKLQEQLGGQFGELSAAMRYLFQGFNTRDKGK---KDLLMDIGTEELGHVEMIATMIARLLKGATPDQQEDAAEI   94 (272)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             9899999999957972499999999998727898058---7899887789988999999999998169983101455566


Q ss_pred             ---------------C--------CCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             ---------------8--------2257-----20488989999999999999999999999999970998899999999
Q gi|254780720|r   71 ---------------S--------IEAP-----VISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWF  122 (164)
Q Consensus        71 ---------------~--------i~~p-----~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~f  122 (164)
                                     .        ...|     .....++..=|...+..|......+.+|++.+   .|+...+.|...
T Consensus        95 ~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~Yi~~sGnl~aDL~~N~aaE~~aR~~y~rL~~mT---dDp~vkd~L~FL  171 (272)
T pfam05067        95 GSVLGGMNPQHAIVSGLGAMPHDSAGVPWTADYIVASGNLIADLRANLAAESQARLQYTRLYEMT---DDPGVRDMLSFL  171 (272)
T ss_pred             HHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHH
T ss_conf             76543788400230388777467899956600023148778889998999975499999999810---882399999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999
Q gi|254780720|r  123 VKEQHEEMALFRRILDKIR  141 (164)
Q Consensus       123 l~EQ~eee~~~~~ll~~l~  141 (164)
                      +.-.+-+..-+...|..|.
T Consensus       172 ~~Re~~Hq~~f~~ALe~l~  190 (272)
T pfam05067       172 IVRDTVHQNAFAKALEILE  190 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9998999999999999830


No 28 
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=97.38  E-value=0.0097  Score=36.36  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC-----------CCH
Q ss_conf             999999999999999981599478999999999999999999999999539971437822572048-----------898
Q gi|254780720|r   14 NMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISA-----------NDV   82 (164)
Q Consensus        14 ~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~-----------~~~   82 (164)
                      .-|..|...|.....++.+   |.+..++.....+|..|-..|-+.|..++++|..-   .|....           -..
T Consensus        10 AGE~gAv~IY~Gql~~~~~---~~~~~~~~~~~~~E~~HL~~f~~~l~~~~~r~s~l---~PlW~~~gf~lG~~~al~G~   83 (165)
T cd01042          10 AGEVGAVRIYRGQLAVARD---PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLL---LPLWYVAGFALGALTALLGK   83 (165)
T ss_pred             CHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHCC
T ss_conf             4189999999999988499---88999999999999999999999888659998607---88899968899999998276


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999997099889999999999999999999999
Q gi|254780720|r   83 EGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRI  136 (164)
Q Consensus        83 ~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~l  136 (164)
                      .-++-..-+.|..|-..|.+-++.-...+|..+...++.|-.|.+++.+.+...
T Consensus        84 ~~~~~~~~aVE~~V~~Hy~~Qi~~L~~~~d~~l~~~l~~~r~DE~eH~~~A~~~  137 (165)
T cd01042          84 KAAMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEEL  137 (165)
T ss_pred             CEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             600200799999999999999998650778889999999997599999999887


No 29 
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=97.28  E-value=0.0076  Score=37.02  Aligned_cols=138  Identities=15%  Similarity=0.148  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC--------
Q ss_conf             9899999999999---99999999999999981599478999999999999999999999999539971437--------
Q gi|254780720|r    2 TNTRDRVLNELMN---MEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFS--------   70 (164)
Q Consensus         2 s~~~~~~Ln~qi~---~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~--------   70 (164)
                      +....++|.+|+.   -|+.++.+|+..+.-|.+   +++-..+.+.+.||+.|.+.+..-|..+-.....+        
T Consensus        18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r~---~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~l~   94 (277)
T COG3546          18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVRD---AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAELY   94 (277)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             9699999999967962479999999875346675---3799999986478888999999999999569998887402557


Q ss_pred             ---------------CCCCCCCC-----C--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             ---------------82257204-----8--------8989999999999999999999999999970998899999999
Q gi|254780720|r   71 ---------------SIEAPVIS-----A--------NDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWF  122 (164)
Q Consensus        71 ---------------~i~~p~~~-----~--------~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~f  122 (164)
                                     -...++.+     |        .++..=|...+..|......+..+++++   .|+...+.|...
T Consensus        95 ~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mt---dDpgvrd~L~fL  171 (277)
T COG3546          95 GSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMT---DDPGVRDTLSFL  171 (277)
T ss_pred             HHHCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEECC---CCCCHHHHHHHH
T ss_conf             75325787202665304778765689965023443368508999998888741500000201047---880289999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999995288
Q gi|254780720|r  123 VKEQHEEMALFRRILDKIRLIGS  145 (164)
Q Consensus       123 l~EQ~eee~~~~~ll~~l~~~g~  145 (164)
                      +.-.+-+...+...|..++-.+.
T Consensus       172 l~Re~~H~~~f~kAL~~l~~~~~  194 (277)
T COG3546         172 LTREIAHQNAFRKALESLENEED  194 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99878999999999999872256


No 30 
>pfam09537 DUF2383 Domain of unknown function (DUF2383). Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=97.10  E-value=0.019  Score=34.53  Aligned_cols=98  Identities=20%  Similarity=0.194  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC--CCCCC---
Q ss_conf             9999999999999999999999999815994789999999999999999999999995399714378225--72048---
Q gi|254780720|r    5 RDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEA--PVISA---   79 (164)
Q Consensus         5 ~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~--p~~~~---   79 (164)
                      +.+.||+.|..-..+..-|..++.-+++   |.+..+|...+.+...|+..|-.+|...||.|.....-.  .-.-|   
T Consensus         2 ~i~~Ln~Li~~~~D~~~gy~~aae~~~~---~~lk~~f~~~~~~r~~~~~eL~~~i~~~Gg~p~~~gs~~g~lhr~w~~l   78 (111)
T pfam09537         2 TINALNDLIETLYDGEEGYEKAAEKVKD---PQLKALFQRRAAERRQAAAELQAEIRALGGEPEDGGSFAGTLHRAWMDL   78 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             7889999999937799999999987678---7899999999999999999999999996899888985677999999999


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------89899999999999999999999999
Q gi|254780720|r   80 ------NDVEGLFSLMYEHENKVTIAYDDAIE  105 (164)
Q Consensus        80 ------~~~~e~~~~al~~E~~vt~~~~~l~~  105 (164)
                            .+-..+++.+..-|..+...|.+..+
T Consensus        79 ks~~~~~d~~~il~~~e~gE~~~~~~y~~aL~  110 (111)
T pfam09537        79 KSALTGDDDEAVLEECERGEDAALEEYDEALE  110 (111)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99982897899999999889999999999971


No 31 
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea.  These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport.  This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.62  E-value=0.056  Score=31.74  Aligned_cols=115  Identities=21%  Similarity=0.158  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC-------CC
Q ss_conf             99999999999999999999981599478999999999999999999999999539971437822572048-------89
Q gi|254780720|r    9 LNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISA-------ND   81 (164)
Q Consensus         9 Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~-------~~   81 (164)
                      +.+....|++.+.+|..+|..-.+   |...+-|..-|..|..||..+-+++..+|..|..   +..+.-+       -.
T Consensus         3 ~~~~~~~E~~~~~~Y~~LA~~ekd---~~~reil~~lA~~E~~Ha~~W~~~l~~~~~~~~~---~~~k~~~~~~L~r~fG   76 (125)
T cd01044           3 LRKFQKDEITEAAIYRKLAKREKD---PENREILLKLAEDERRHAEFWKKFLGKRGVPPPR---PKLKIFFYKLLARIFG   76 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHH
T ss_conf             889999899899999999976479---8999999999999999999999998865788888---6399999999999967


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999999999999709988999999999999999999999999
Q gi|254780720|r   82 VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILD  138 (164)
Q Consensus        82 ~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~  138 (164)
                      +.=+++..-..|......|....+.         ..-+..++.+..+++..+..+++
T Consensus        77 ~~fvl~llE~~E~~a~~~Y~~~~~~---------~~~~~~I~~DE~~HE~~l~~l~~  124 (125)
T cd01044          77 PTFVLKLLERGEERAIEKYDRLLEE---------RPELKEIIADELEHEEVLIALLD  124 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999998876148889866876---------78899999999999999997745


No 32 
>pfam03232 COQ7 Ubiquinone biosynthesis protein COQ7. Members of this family contain two repeats of about 90 amino acids, that contains two conserved motifs. One of these DXEXXH may be part of an enzyme active site.
Probab=96.24  E-value=0.094  Score=30.36  Aligned_cols=117  Identities=14%  Similarity=0.088  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC-----------CCH
Q ss_conf             999999999999999981599478999999999999999999999999539971437822572048-----------898
Q gi|254780720|r   14 NMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISA-----------NDV   82 (164)
Q Consensus        14 ~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~-----------~~~   82 (164)
                      .-|+.|...|.....++.+  -|....+++....+|..|-..|-+.+..++++|.+-   .|-...           -..
T Consensus        12 AGE~gAv~IY~GQ~a~~~~--~~~~~~~~~~~~~~E~~HL~~f~~~l~e~~~Rps~l---~PlW~~~gf~lG~~~al~G~   86 (171)
T pfam03232        12 AGELGAVRIYAGQLAVLGP--RPSLGPLIKEMWDQEKVHLATFNELIAERRVRPTLL---LPLWHVAGFALGAGTALLGK   86 (171)
T ss_pred             CHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHHHHHHCCC
T ss_conf             3389999999999999789--978999999999999999999998889829998406---77799989999999873377


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999--709988999999999999999999999
Q gi|254780720|r   83 EGLFSLMYEHENKVTIAYDDAIETIL--AEKDHQTFQFLQWFVKEQHEEMALFRR  135 (164)
Q Consensus        83 ~e~~~~al~~E~~vt~~~~~l~~~A~--~~~D~~t~~fl~~fl~EQ~eee~~~~~  135 (164)
                      ..++...-+.|..|-+.|.+-++.-.  ...|..+...+..|-.|.+++-+.+.+
T Consensus        87 ~~~~a~t~aVE~~V~~Hy~~Qi~~L~~~~~~d~~l~~~l~~~~~dE~~H~~~A~~  141 (171)
T pfam03232        87 KAAMACTAAVETVIGEHYNDQLRELEELEEDDKELKETIAKFRDEELEHRDTAIE  141 (171)
T ss_pred             CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6124005999999999999999998617833299999999999889999999998


No 33 
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.60  E-value=0.12  Score=29.70  Aligned_cols=66  Identities=17%  Similarity=0.331  Sum_probs=56.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             204889899999999999999999999999999709988999999999999999999999999999528
Q gi|254780720|r   76 VISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIG  144 (164)
Q Consensus        76 ~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g  144 (164)
                      +....++.+++..|...|...++-|..+++.+   .|..+..++.++..+...|.+.|..++.++..-+
T Consensus        19 ~~~~~~~~e~L~~Ai~~E~eA~~fY~~lae~~---~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~   84 (176)
T COG1633          19 LVKELSIEELLAIAIRGELEAIKFYEELAERI---EDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE   84 (176)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             75031199999999997999999999999765---8776999999999999999999999999866775


No 34 
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A).  ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=95.32  E-value=0.23  Score=28.07  Aligned_cols=134  Identities=14%  Similarity=0.049  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC----
Q ss_conf             8999999999999999999999999998159947899999999999999999999999953997143782257204----
Q gi|254780720|r    3 NTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVIS----   78 (164)
Q Consensus         3 ~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~----   78 (164)
                      .++...|.+|-+-|-.|+..=+++-..+  -+.+.+..-+-.-|.||+.|..++.+-|..||....  ++.+.+.-    
T Consensus        17 ~~~~~~L~DHA~cEkKAAs~Amsli~ry--p~~~~Lv~~m~~lA~EEL~HF~qV~~lm~~Rgi~l~--~~~~~~Y~~~L~   92 (180)
T cd07910          17 ANLDEILIDHAHCEKKAASSAMSLIFRY--PEKPELVEAMSDLAREELQHFEQVLKIMKKRGIPLG--PDSKDPYASGLR   92 (180)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHH
T ss_conf             8889999999999999999999999988--993899999999999999999999999998499789--999788999999


Q ss_pred             ----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             ----889---89999999999999999999999999970998899999999999999999999999999952887
Q gi|254780720|r   79 ----AND---VEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSG  146 (164)
Q Consensus        79 ----~~~---~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~  146 (164)
                          ...   ..+.+-.+-=.|-   ++-.+..-+|....|.....|-..++.   .|.+++.+-++..+.+++.
T Consensus        93 ~~~r~~~~~~llD~Llv~a~IEA---RscERF~lLa~~l~D~eL~~FY~~L~~---SEarH~~~yl~LA~~~~~~  161 (180)
T cd07910          93 KLVRKGEPERLLDRLLVAALIEA---RSCERFALLAPALPDPELKKFYRGLLE---SEARHYELFLDLARKYFDE  161 (180)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCH
T ss_conf             87357971889999999999985---567689999855886899999999999---9988999999999988786


No 35 
>pfam04305 DUF455 Protein of unknown function (DUF455).
Probab=95.30  E-value=0.23  Score=28.02  Aligned_cols=131  Identities=19%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCC----
Q ss_conf             9999999999999999999999999815994789999999999999999999999995399714378225720488----
Q gi|254780720|r    5 RDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAN----   80 (164)
Q Consensus         5 ~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~----   80 (164)
                      -..+|-..-+.||.|+.+.+-+..-|.+.-..-+..| -.-|.||-.|...+.+++..+|..  .++.++=..-|.    
T Consensus        65 r~~llHa~AHIE~nAIdLa~Da~~RF~~lP~~Fy~Dw-~~VA~dEa~Hf~ll~~rL~~lG~~--YGd~PaH~gLW~~a~~  141 (250)
T pfam04305        65 RAALLHALAHIELNAIDLALDAVARFRGLPREFYDDW-LKVADDEAKHFRLLRERLEELGSE--YGDLPAHDGLWEAAEK  141 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHH
T ss_conf             9999999999999999999999987236778999999-999999999999999999982987--5797100499999998


Q ss_pred             ---CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q ss_conf             ---989999-99999999999999999999997099889999999999999999----99999999
Q gi|254780720|r   81 ---DVEGLF-SLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEM----ALFRRILD  138 (164)
Q Consensus        81 ---~~~e~~-~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee----~~~~~ll~  138 (164)
                         |+..=+ -.-+-+|..-.+.--.+++.-...+|..+...|+-++.|++.++    +++..+..
T Consensus       142 T~~dllaRmAivp~vlEArGLD~tp~~~~kl~~~gD~~sa~iL~~I~~dEI~HVa~G~rWF~~~c~  207 (250)
T pfam04305       142 TADDLLARLALVPRVLEARGLDATPGIIAKLEGAGDNESAAILEVILRDEIGHVAIGNRWFRFLCE  207 (250)
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             533899999886888886067667899999997798678999999999988899987999999998


No 36 
>pfam05974 DUF892 Domain of unknown function (DUF892). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=94.72  E-value=0.33  Score=27.04  Aligned_cols=132  Identities=14%  Similarity=0.047  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC----------
Q ss_conf             9999999999999999999999999981599478999999999999999999999999539971437822----------
Q gi|254780720|r    4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIE----------   73 (164)
Q Consensus         4 ~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~----------   73 (164)
                      -....|.+....|-++.-.--.|+.-+.+   |.+..-|..+..|-++|..++-+-+..+|..|.-..-+          
T Consensus         5 lf~~~L~d~y~aE~q~~~al~~~~~~a~~---peLk~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~~m~gli~e~~   81 (159)
T pfam05974         5 LFIDELRDIYAAEKQALKALPKMAKAAED---PELKAALEQHLEETEGQIERLEQIFERLGESPSGKKCDAMEGLVAEGQ   81 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999999999999999999988589---999999999999999999999999998299955573489999999999


Q ss_pred             CC-CCCC--CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57-2048--898999--99999999999999999999999709988999999999999999999999999
Q gi|254780720|r   74 AP-VISA--NDVEGL--FSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILD  138 (164)
Q Consensus        74 ~p-~~~~--~~~~e~--~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~  138 (164)
                      .. ....  ..++++  +-.+...|.+-+.+|..++..|..-++......|+..+.|...--+++..+..
T Consensus        82 ~~~~~~~~d~~vkda~li~aaq~~EhyEIA~YgtL~~~A~~lG~~~~a~lL~~~L~EE~~~d~~L~~~a~  151 (159)
T pfam05974        82 ELLEEDAGDEVVKDAALIAAAQAVEHYEIAAYGTLIAAAEQLGLKDAAALLEQTLDEEKATDEKLTQLAE  151 (159)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9871456736887389999999999999999999999998869888999999999999999999999999


No 37 
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs.  Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid.  Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=93.70  E-value=0.54  Score=25.74  Aligned_cols=108  Identities=16%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC-----------CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9478999999999999999999999999539971437822-----------57204889899999999999999999999
Q gi|254780720|r   34 NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIE-----------APVISANDVEGLFSLMYEHENKVTIAYDD  102 (164)
Q Consensus        34 ~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~-----------~p~~~~~~~~e~~~~al~~E~~vt~~~~~  102 (164)
                      +-.+-+.|.+....||-.|+.-+-+|+.-.|.. ....++           .|+. ..++...|-..-=+|+....+..+
T Consensus        91 ~~~~W~~Wv~~WTAEEnRHg~~Lr~YL~~tr~V-Dp~~lE~~r~~~i~~G~~~~~-~~~p~~~~~YtsfQElAT~IsH~N  168 (297)
T cd01050          91 SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRV-DPRALERTRQYLIGSGFDPGT-DNSPYRGFVYTSFQELATRISHRN  168 (297)
T ss_pred             CCCCHHHHCCCCCCCCCHHHHHHHHHEEECCCC-CHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf             898256520652644240378886310005677-829999999999837889999-877899999999987501333623


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999709988999999999999999999999999999528
Q gi|254780720|r  103 AIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIG  144 (164)
Q Consensus       103 l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g  144 (164)
                      ..++|. .+|+....++..+-.+.--++.-.+++++.+=-+.
T Consensus       169 t~rla~-~gDp~l~~i~~rIA~DE~rH~~fYr~iv~~~le~d  209 (297)
T cd01050         169 TARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELD  209 (297)
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             888750-59979999998875168899999999999998339


No 38 
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=92.26  E-value=0.88  Score=24.46  Aligned_cols=121  Identities=12%  Similarity=0.094  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CCCCCH
Q ss_conf             9999999999999999999999999981599478999999999999999999999999539971437822572-048898
Q gi|254780720|r    4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPV-ISANDV   82 (164)
Q Consensus         4 ~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~-~~~~~~   82 (164)
                      ...+-|..-+..||....+|--++.-..+ .-|-+++.|.-.|.+|-.||--+-+-+.+-|..++++-..+.+ ..+--|
T Consensus        81 ~f~dfL~~SctsEFSG~lLykEl~rr~k~-~np~l~e~F~~MaRDEaRHAGFlN~am~df~i~lDLgfLtk~k~YTfF~P  159 (351)
T PRK13654         81 EFIDFLERSCTAEFSGFLLYKELSRRLKD-RNPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKKYTFFPP  159 (351)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECC
T ss_conf             99999998767660123699999987033-78189999999864377777789999998195302576635662266466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999970998899999999999
Q gi|254780720|r   83 EGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKE  125 (164)
Q Consensus        83 ~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~E  125 (164)
                      +=+|=..+=-||-=.-.|-.++..-+++-+..-...++||=.=
T Consensus       160 kfI~YatYLSEKIGY~RYItIyRHLe~hPe~r~~PiF~~Fe~W  202 (351)
T PRK13654        160 KFIFYATYLSEKIGYWRYITIYRHLEKHPEHRIHPIFKFFENW  202 (351)
T ss_pred             CEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             4243144877654067877999998869210335389999998


No 39 
>pfam03405 FA_desaturase_2 Fatty acid desaturase.
Probab=91.43  E-value=1.1  Score=23.90  Aligned_cols=105  Identities=15%  Similarity=0.049  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE----------ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             789999999999999999999999995399714----------3782257204889899999999999999999999999
Q gi|254780720|r   36 DGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK----------FSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIE  105 (164)
Q Consensus        36 ~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~----------~~~i~~p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~  105 (164)
                      .+-+.|.+....||-.|..-+-+|+.-.|..=.          ++..-.|.. ..++...|-..-=+|.....+-.+..+
T Consensus        98 ~~W~~Wv~~WTAEEnRHg~~Lr~YL~ltr~VD~~~lE~~~~~~i~~G~~p~~-~~~py~~~vYtSFQElAT~ISH~NTgr  176 (330)
T pfam03405        98 TPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPGT-ENNPYLGFIYTSFQERATFISHGNTAR  176 (330)
T ss_pred             CCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             5065321752644341478997655522467859999999999827889987-668104330455788876511411999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999709988999999999999999999999999999
Q gi|254780720|r  106 TILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIR  141 (164)
Q Consensus       106 ~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~  141 (164)
                      +|.+.+|+....++..+-.+.--++.--+++++.+=
T Consensus       177 la~~~GDp~la~i~~rIAaDE~rH~~fYr~iv~~~~  212 (330)
T pfam03405       177 LAKEHGDTKLAQICGTIASDEKRHETAYTKIVEKLF  212 (330)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             988729989999998874337789999999999998


No 40 
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species.  YciF has a ferritin-like domain.  Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=91.34  E-value=1.1  Score=23.84  Aligned_cols=120  Identities=16%  Similarity=0.061  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC----------C
Q ss_conf             999999999999999999999999815994789999999999999999999999995399714378225----------7
Q gi|254780720|r    6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEA----------P   75 (164)
Q Consensus         6 ~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~----------p   75 (164)
                      ...|.+....|-++.-.--.|+.-.   .-|-+..-|..+..|-.+|..++-+=+..+|+.|.-..-+.          .
T Consensus         5 ~~~L~d~y~aE~Q~~~~l~~m~~~a---~~peLk~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~am~gli~e~~~~   81 (147)
T cd07909           5 VHELRDLYSAEKQLVKALPKMAKAA---TSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEEL   81 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999999999999999999883---8999999999999999999999999999819996667408999999999999


Q ss_pred             CCCC--CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             2048--89899--99999999999999999999999970998899999999999999
Q gi|254780720|r   76 VISA--NDVEG--LFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHE  128 (164)
Q Consensus        76 ~~~~--~~~~e--~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~e  128 (164)
                      -..+  ..+.+  ++-.+...|.+-+.+|..++..|...++......|+..+.|..+
T Consensus        82 ~~~~~~~~v~Da~li~aaq~~EHyEIA~YgtL~~~A~~lG~~e~a~lL~~~L~EE~~  138 (147)
T cd07909          82 IEETGDSAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQETLDEEKA  138 (147)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             864488889999999999999999999999999999885987899999999999999


No 41 
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=90.90  E-value=1.2  Score=23.58  Aligned_cols=121  Identities=12%  Similarity=0.077  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CCCCCH
Q ss_conf             9999999999999999999999999981599478999999999999999999999999539971437822572-048898
Q gi|254780720|r    4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPV-ISANDV   82 (164)
Q Consensus         4 ~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~-~~~~~~   82 (164)
                      ...+-|..-+..||..-.+|--++.-..+. -|-+++.|.-.|.+|-.||--+=+-+.+-|..++++-..+.+ ..+-.|
T Consensus        63 ~f~dfL~~SctsEFSG~lLykEl~rr~k~~-nP~l~e~f~~MaRDEaRHAGFlN~al~d~~~~lDLgfLtk~k~YT~F~p  141 (323)
T cd01047          63 IFLEFLERSCTSEFSGFLLYKELGRRLKNT-NPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRKYTFFKP  141 (323)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEECC
T ss_conf             999999987677601236899999874237-9079999999865477777678899998495202476516673266576


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999970998899999999999
Q gi|254780720|r   83 EGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKE  125 (164)
Q Consensus        83 ~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~E  125 (164)
                      +=+|=..+=-||-=.-.|-.++..-+++-+..-...+.||=.=
T Consensus       142 kfI~YatYLSEKIGY~RYItIyRhLe~~Pe~rf~PiF~~Fe~W  184 (323)
T cd01047         142 KFIFYATYLSEKIGYWRYITIYRHLERNPENQFHPIFKYFENW  184 (323)
T ss_pred             CEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             0454034666543167887999999869110236079989988


No 42 
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=90.48  E-value=1.3  Score=23.35  Aligned_cols=120  Identities=12%  Similarity=0.099  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CCCCCHH
Q ss_conf             999999999999999999999999981599478999999999999999999999999539971437822572-0488989
Q gi|254780720|r    5 RDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPV-ISANDVE   83 (164)
Q Consensus         5 ~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~-~~~~~~~   83 (164)
                      ..+-|..-+..||..-.+|--++.-..+. -|-+++.|.-.|.+|-.||-.+-+-+.+-|..++++-..+.+ ..+-.|+
T Consensus        78 FidfL~~SctsEFSG~lLykEl~rr~k~~-nP~l~e~f~~MaRDEaRHAGFlNkam~df~~~lDLgfLtk~k~YTfF~Pk  156 (349)
T CHL00185         78 FIEFLERSCTAEFSGFLLYKELSRKLKDR-NPLLAECFLLMSRDEARHAGFLNKAMADFNLSLDLGFLTKSRKYTFFAPK  156 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEECCC
T ss_conf             99999987677601236999999871337-90799999998765777878899999984952024765056612654644


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999970998899999999999
Q gi|254780720|r   84 GLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKE  125 (164)
Q Consensus        84 e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~E  125 (164)
                      =+|=..+=-||--.-.|-.++..-+++-+..-...+.||-.=
T Consensus       157 fI~YatYLSEKIGY~RYItIyRhLe~~Pe~r~~PiF~~Fe~W  198 (349)
T CHL00185        157 FIFYATYLSEKIGYWRYITIYRHLEKHPEHRIYPIFKFFENW  198 (349)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             011355877654267887999998869100226389999998


No 43 
>pfam06175 MiaE tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE). This family consists of several bacterial tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=90.37  E-value=1.4  Score=23.29  Aligned_cols=133  Identities=16%  Similarity=0.059  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC------
Q ss_conf             99999999999999999999999999815994789999999999999999999999995399714378225720------
Q gi|254780720|r    4 TRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVI------   77 (164)
Q Consensus         4 ~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~------   77 (164)
                      ++...|.+|-+-|-.|+..-+++-..+. -..+.+..-+-.-|.||+.|..++.+-|..||....  .+.+.+.      
T Consensus        27 ~~~~lL~DHA~CEkKAAstAmsli~rY~-p~~~~Lv~~ms~LArEEL~HF~qV~~im~~Rgi~l~--~~~~~~Ya~~L~~  103 (199)
T pfam06175        27 NLDVLLLDHSHCELKAAQTAMNLMRRYA-PSNQDLVNKLTRLAKEELHHFEQVLEILEARNIPYA--PISASRYAKGLLA  103 (199)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHH
T ss_conf             7889999989899999999999999839-982789999999999999999999999998599688--9997889999998


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             -----488989999999999999999999999999970998899999999999999999999999999952887
Q gi|254780720|r   78 -----SANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGSG  146 (164)
Q Consensus        78 -----~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~  146 (164)
                           ...-+.+.+-.+-=.|-.--..+   .-+|... |.....|-..+++   .|.+++.+-++..+.+++.
T Consensus       104 ~vr~~~~~rllD~Llv~AlIEARScERF---~lLa~~l-d~eL~~FY~~L~~---SEarH~~~yl~LA~~~~~~  170 (199)
T pfam06175       104 AVRTHEPQRLLDKLIVGAYIEARSCERF---ALLAPHL-DAELAKFYVSLLR---SEARHFQDYLKLAYQYFDE  170 (199)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHC-CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCH
T ss_conf             7447874889999999999976567799---9999866-6999999999999---9988999999999988687


No 44 
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=80.60  E-value=4.4  Score=20.23  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHH--HCCC-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999999999998--1599-478999999999999999999---999999539971437822572048898999999999
Q gi|254780720|r   18 VAQYHYMQAAAWA--ASHN-LDGCCNFLLKHAMEEHSHVIR---IFKHLTDLGVEAKFSSIEAPVISANDVEGLFSLMYE   91 (164)
Q Consensus        18 ~as~~Yl~~a~~~--~~~~-~~g~a~~f~~~a~EE~~HA~~---l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~~~al~   91 (164)
                      ...++|-+.+..+  .+.| ++|.+.-.+--+.+|.-|...   +++.+..-.-.|.+..+.  +..-..+.++|..|.+
T Consensus       205 Egi~F~~~F~~~~~~~~~~~m~g~~~~~~~i~rDE~~Hl~~~~~ii~~l~~~~e~pe~~~~~--~e~~~~v~~m~~~ave  282 (376)
T PRK09101        205 EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPEMAEIA--EECKQECYDLFVQAAE  282 (376)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf             68998999999999986488845799999999719989999999999998538982788999--9999999999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780720|r   92 HENKVTIAY  100 (164)
Q Consensus        92 ~E~~vt~~~  100 (164)
                      +|++-...+
T Consensus       283 ~E~~wa~yl  291 (376)
T PRK09101        283 QEKEWADYL  291 (376)
T ss_pred             HHHHHHHHH
T ss_conf             999999996


No 45 
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.13  E-value=4.5  Score=20.13  Aligned_cols=121  Identities=18%  Similarity=0.155  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC-----
Q ss_conf             999999999999999999999999981599478999999999999999999999999539971437822572048-----
Q gi|254780720|r    5 RDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISA-----   79 (164)
Q Consensus         5 ~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~-----   79 (164)
                      ...+|...-..||.|+++-+--+.-|....+.-+-.|++ -|.||-.|...+-+++..+|...-  ..++-..-|     
T Consensus        76 ~aallHAiAHIEfNAInLaLDa~~RF~~~p~~F~~dWm~-VA~EE~~HF~Ll~~~L~~LG~~YG--DfpaHdgLw~~a~~  152 (268)
T COG2833          76 RAALLHAIAHIEFNAINLALDAVYRFAPLPLQFYDDWMR-VADEEAKHFRLLRERLKSLGYDYG--DFPAHDGLWQMAEA  152 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHH
T ss_conf             999999998976425778889999846886789999999-999998999999999998188757--88130518999987


Q ss_pred             --CCHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             --89899999-99999999---999999999999970998899999999999999999
Q gi|254780720|r   80 --NDVEGLFS-LMYEHENK---VTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMA  131 (164)
Q Consensus        80 --~~~~e~~~-~al~~E~~---vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~  131 (164)
                        .++..-+. .-+-.|..   +|-.+.  .++ .+.+|..+...|+=++++.+.++.
T Consensus       153 T~~dl~~RmalVprvLEARGLDatP~l~--aK~-~~~gD~~~~~iLdIIlrDEigHVa  207 (268)
T COG2833         153 TANDLLARMALVPRVLEARGLDATPSLR--AKL-AETGDSEAAAILDIILRDEIGHVA  207 (268)
T ss_pred             HHCCHHHHHHHHHHHHHHCCCCCCHHHH--HHH-HHCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             6408898865446677642677887899--999-873864888899999731234222


No 46 
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.06  E-value=4.9  Score=19.92  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC---CCCCCCCCCC-
Q ss_conf             999999999999999999999999981599478999999999999999999999999539971437---8225720488-
Q gi|254780720|r    5 RDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFS---SIEAPVISAN-   80 (164)
Q Consensus         5 ~~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~---~i~~p~~~~~-   80 (164)
                      ....|.+....|-+..-.--.||.-+.   +|-+..-|..+-.|.-.|..++-+-....|..+.-.   .+........ 
T Consensus        10 f~~~LrD~y~aEkq~~kaL~kma~~~~---~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~~~~~~~cda~~giiaegq~   86 (167)
T COG3685          10 FIDTLRDIYAAEKQILKALPKMARRAQ---YPELKAAIEKHLEETKGQIERLEQVFERLGKKARRVTCDAMEGLIAEGQE   86 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999999999999999999899998714---79999999999998888999999999984865322328889979998899


Q ss_pred             --------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --------98--999999999999999999999999997099889999999999999999999999
Q gi|254780720|r   81 --------DV--EGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRI  136 (164)
Q Consensus        81 --------~~--~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~l  136 (164)
                              .+  ..+.-.+...|..-+.+|.-|+..|.+.+|-.+...|...|+|...--.++.++
T Consensus        87 i~~~~~~~evlda~L~~aaq~vEhyEIA~YgtL~a~A~qlG~~~a~~ll~~~L~eEkatd~~Lt~~  152 (167)
T COG3685          87 IMEEFKSNEVLDAGLIGAAQKVEHYEIACYGTLIAAAEQLGDDEAVKLLEAILEEEKATDEKLTQL  152 (167)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987656408888998999999999999999999999998283889999999988899899999997


No 47 
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=78.26  E-value=5.2  Score=19.78  Aligned_cols=82  Identities=9%  Similarity=-0.038  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHH--HHHCCC-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHCC-CCCEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             999999999999--981599-47899999999999999999999-9999539-971437822572048898999999999
Q gi|254780720|r   17 YVAQYHYMQAAA--WAASHN-LDGCCNFLLKHAMEEHSHVIRIF-KHLTDLG-VEAKFSSIEAPVISANDVEGLFSLMYE   91 (164)
Q Consensus        17 l~as~~Yl~~a~--~~~~~~-~~g~a~~f~~~a~EE~~HA~~l~-~yi~~rg-g~~~~~~i~~p~~~~~~~~e~~~~al~   91 (164)
                      +.+.++|-..+.  ++.+.| ++|.+.-++-.+.+|--|..... .+..... -.|.    ..+ ..-..+.++++.+++
T Consensus       175 lEGi~FysgFa~~l~l~~~gkM~g~~~ii~~I~RDEslH~~~~~~~~~~~~~~~~~e----~~~-e~~~~v~~~~~~aVe  249 (337)
T PRK13965        175 MPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPE----KQA-EMKAFVFDLLYELID  249 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHH-HHHHHHHHHHHHHHH
T ss_conf             999999999999999886698723798878998704888889999999998742987----789-999999999999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780720|r   92 HENKVTIAYDDA  103 (164)
Q Consensus        92 ~E~~vt~~~~~l  103 (164)
                      +|+.-+..+-..
T Consensus       250 lE~~~~~~~~~~  261 (337)
T PRK13965        250 LEKAYLRELYAG  261 (337)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999836


No 48 
>TIGR02284 TIGR02284 conserved hypothetical protein; InterPro: IPR011971    Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown..
Probab=77.93  E-value=5.3  Score=19.72  Aligned_cols=129  Identities=16%  Similarity=0.085  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC---------C-
Q ss_conf             999999999999999999999999815994789999999999999999999999995399714378225---------7-
Q gi|254780720|r    6 DRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEA---------P-   75 (164)
Q Consensus         6 ~~~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~---------p-   75 (164)
                      ...||+.|..-...-.   .+..-....+=|.++.+|+..|.+...-+.-|-+|+..+||.|....--.         . 
T Consensus         2 ~~~Ln~LI~~~~d~~~---~f~~sA~~~~d~~l~tlf~~~a~~~~a~v~eLqq~V~~~Gg~ped~Gs~~g~lh~~w~~ir   78 (142)
T TIGR02284         2 IESLNDLIEVSIDGKD---GFEESAEEVKDPELATLFRRIADEKSAIVSELQQLVESLGGKPEDSGSVAGKLHRIWVKIR   78 (142)
T ss_pred             HHHHHHHHHHCCCCCH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             1556778860799702---4788786328767999998742455689998899999717954656510155657655552


Q ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -20488989999999999999999999999999970998899999999999999999999999999
Q gi|254780720|r   76 -VISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKI  140 (164)
Q Consensus        76 -~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l  140 (164)
                       ....++-..++..+=.-|-.+...|.+..+...+.   .+..-+..-+.-|.++++.-.+-+..+
T Consensus        79 ~~l~~~d~~~~l~e~Er~ED~~~~aY~~~L~~~~ek---G~~aa~~~v~~~qy~~v~~~hd~~~~~  141 (142)
T TIGR02284        79 AKLTSNDDLVVLEEAERGEDVAKKAYDETLKDQDEK---GVPAAVRDVVERQYEGVKANHDKIRAL  141 (142)
T ss_pred             HHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             102898403467543000018889999998630146---988889999999889888524765306


No 49 
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=76.39  E-value=5.9  Score=19.45  Aligned_cols=113  Identities=23%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC-----------CCH
Q ss_conf             999999999999999981599478999999999999999999999999539971437822572048-----------898
Q gi|254780720|r   14 NMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISA-----------NDV   82 (164)
Q Consensus        14 ~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~-----------~~~   82 (164)
                      .-|+.|-..|.-.+.+.... .+..  -++..+++|..|--.+-++++++|..|.+-   .|-...           -..
T Consensus        51 aGE~~A~~iY~GQ~~~~r~~-~~R~--~l~em~d~E~~HL~~f~~~l~e~~vRPsll---~P~W~~~~FalGA~a~Llgd  124 (204)
T COG2941          51 AGELGAQAIYQGQAAVARSP-EPRI--QLKEMADEEIDHLAWFEQRLLELGVRPSLL---NPLWYAAAFALGAGAGLLGD  124 (204)
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHCCC
T ss_conf             24788999984279998182-3689--999999878899999999999815782078---79999888998777763053


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999999997099889999999999999999999
Q gi|254780720|r   83 EGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMALF  133 (164)
Q Consensus        83 ~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~  133 (164)
                      +..+-..-+.|..+-+.|..-...- .+.|..+...+..|=.+.+++-+.+
T Consensus       125 k~am~~teavE~vIe~Hy~~ql~~L-~~~d~~lr~~l~qfR~DE~eH~d~A  174 (204)
T COG2941         125 KAAMGFTEAVETVIEKHYDGQLREL-PNLDAELRAILAQFRDDELEHLDNA  174 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8888878999999999999999987-4116999999999866999877789


No 50 
>pfam08066 PMC2NT PMC2NT (NUC016) domain. This domain is found at the N-terminus of 3'-5' exonucleases with HRDC domains, and also in putative exosome components.
Probab=74.91  E-value=4.6  Score=20.09  Aligned_cols=58  Identities=9%  Similarity=-0.059  Sum_probs=41.3

Q ss_pred             CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             94-78999999999999999999999999539971437822572048898999999999
Q gi|254780720|r   34 NL-DGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLFSLMYE   91 (164)
Q Consensus        34 ~~-~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~~~al~   91 (164)
                      .+ |+|++++..++..=+.-+..+++.+..++..+..+....+...|..+.++....++
T Consensus        21 S~dp~~~~~ld~~s~rLl~l~n~ll~~~~~~~~~~~~~~~~~~e~~w~~vvdv~D~llE   79 (91)
T pfam08066        21 SFDPEFSQSLDEQSQRLLSLINDLLQSAGSKSDIPDRSDEDDVEDQWEGVVDVNDSLLE   79 (91)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             50888999999999999999999998447667887875423188999999999999999


No 51 
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=74.01  E-value=6.8  Score=19.08  Aligned_cols=79  Identities=16%  Similarity=0.110  Sum_probs=50.2

Q ss_pred             HHHHHHHHH--HHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999--981599-478999999999999999999999999539-9714378225720488989999999999999
Q gi|254780720|r   20 QYHYMQAAA--WAASHN-LDGCCNFLLKHAMEEHSHVIRIFKHLTDLG-VEAKFSSIEAPVISANDVEGLFSLMYEHENK   95 (164)
Q Consensus        20 s~~Yl~~a~--~~~~~~-~~g~a~~f~~~a~EE~~HA~~l~~yi~~rg-g~~~~~~i~~p~~~~~~~~e~~~~al~~E~~   95 (164)
                      .++|-+.+.  |+.+.| ++|++.-.+--+.+|--|..-...-++..- ..|.   ...+.. ...+.++++.+.++|+.
T Consensus       168 i~FyssFa~~~~f~~~g~m~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~---~~~~~~-~~~i~~~~~eave~E~~  243 (325)
T PRK09614        168 FLFYSGFYYPLYLARQGKMTGTGQIIRLIIRDESLHGYYIGYLFQAGLEELPE---LEQEEL-KDEIYDLLYELYENEEA  243 (325)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf             99998899999999859662589999999987888899999999999863988---557999-99999999999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780720|r   96 VTIAYDD  102 (164)
Q Consensus        96 vt~~~~~  102 (164)
                      -+..+-.
T Consensus       244 ~~~~~~~  250 (325)
T PRK09614        244 YTELLYD  250 (325)
T ss_pred             HHHHHHC
T ss_conf             9999855


No 52 
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=67.49  E-value=9.5  Score=18.20  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=43.6

Q ss_pred             HHHHHHHHHH--HHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999--98159-94789999999999999999999999995399714378225720488989999999999999
Q gi|254780720|r   19 AQYHYMQAAA--WAASH-NLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENK   95 (164)
Q Consensus        19 as~~Yl~~a~--~~~~~-~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~~~al~~E~~   95 (164)
                      +.++|-..+.  ++.+. -++|.+.-++-.+.+|.-|...+.. +..++ ....+.+..+.. -..+.+++..+.+.|+.
T Consensus       164 g~~FysgFa~~l~l~~~~kM~G~~~ii~~I~RDEs~H~~~~~~-l~~~~-~~~~~~~~~~e~-~~~i~~~~~~~v~~E~~  240 (324)
T PRK13966        164 SFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGY-KFQRG-LALVDDVTRAEL-KDYTYELLFELYDNEVE  240 (324)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHCCHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf             9999999999999985699867899999999837888879999-99998-885487768999-99999999999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780720|r   96 VTIAYDDAI  104 (164)
Q Consensus        96 vt~~~~~l~  104 (164)
                      -+..+-...
T Consensus       241 ~~~~l~~~~  249 (324)
T PRK13966        241 YTQDLYDEV  249 (324)
T ss_pred             HHHHHHCCC
T ss_conf             999875237


No 53 
>TIGR02630 xylose_isom_A xylose isomerase; InterPro: IPR013452    Xylose isomerase (5.3.1.5 from EC) is an enzyme which interconverts D-xylose and D-xylulose.; GO: 0009045 xylose isomerase activity.
Probab=60.14  E-value=9.9  Score=18.09  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCCEECCCCCC
Q ss_conf             947899999999999999999999----999953997143782257
Q gi|254780720|r   34 NLDGCCNFLLKHAMEEHSHVIRIF----KHLTDLGVEAKFSSIEAP   75 (164)
Q Consensus        34 ~~~g~a~~f~~~a~EE~~HA~~l~----~yi~~rgg~~~~~~i~~p   75 (164)
                      |+.|-...+.....-|++|.-+|+    +|-...|-.+.+=--|+|
T Consensus       188 GREGYetLLNTD~~~Eld~lArF~~mAvdYa~~IGF~G~fLIEPKP  233 (437)
T TIGR02630       188 GREGYETLLNTDMKLELDHLARFLQMAVDYAKKIGFKGQFLIEPKP  233 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             5303321445217789999988999999998846899844116763


No 54 
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=54.00  E-value=14  Score=17.08  Aligned_cols=50  Identities=18%  Similarity=0.097  Sum_probs=33.3

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHCCCCCEECCCCCCC---CCCCCHHHHHHHHHHH
Q ss_conf             999999999-9999999999539971437822572---0488989999999999
Q gi|254780720|r   43 LKHAMEEHS-HVIRIFKHLTDLGVEAKFSSIEAPV---ISANDVEGLFSLMYEH   92 (164)
Q Consensus        43 ~~~a~EE~~-HA~~l~~yi~~rgg~~~~~~i~~p~---~~~~~~~e~~~~al~~   92 (164)
                      +..+.|.+. .|+++..|+..+||...++.-..|.   ..|.--+..|+.|+.+
T Consensus       216 ~p~~~E~l~~daq~Il~yL~~~gG~mpf~DKSsPEdIk~~FgiSKg~FKrAiGg  269 (287)
T COG2996         216 RPRAHEMLDEDAQMILTYLESNGGFMPFNDKSSPEDIKATFGISKGQFKRAIGG  269 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             563177654148999999997499244678999899998868178899998888


No 55 
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=52.96  E-value=17  Score=16.64  Aligned_cols=41  Identities=7%  Similarity=0.181  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999970998899999999999999999999999999
Q gi|254780720|r  100 YDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKI  140 (164)
Q Consensus       100 ~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l  140 (164)
                      .--+..+.+..+=..+...++|++++..-|..-..+++..+
T Consensus       244 Fa~il~l~RrgkM~G~~~~~~~i~RDEslH~~f~~~li~~i  284 (391)
T PRK07209        244 FTQILSLGRQNKMTGAAEQYQYILRDESMHLNFGIDLINQI  284 (391)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999987514575758776463202788999999999998


No 56 
>pfam10152 DUF2360 Predicted coiled-coil domain-containing protein (DUF2360). This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown.
Probab=39.39  E-value=28  Score=15.34  Aligned_cols=43  Identities=14%  Similarity=0.224  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf             8999999999999999999999999999528875169999999996531
Q gi|254780720|r  114 QTFQFLQWFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKIAN  162 (164)
Q Consensus       114 ~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~~~~glyl~D~~l~~~~~  162 (164)
                      .|.+||+.|-..   =|.++.++-.+|.++.-   .+-+++.+|+.|++
T Consensus         7 ~Tv~FLNrFs~~---CE~KL~~~e~~LQ~lE~---~l~ILEaKL~SIpg   49 (147)
T pfam10152         7 STVQFLNRFSAV---CESKLVEAERSLQQLET---TLSLLEAKLASIPG   49 (147)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCC
T ss_conf             999999999999---99999999999999999---99999999746975


No 57 
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a  heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases.  RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=38.37  E-value=29  Score=15.25  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=26.5

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             15994789999999999999999999999995399714
Q gi|254780720|r   31 ASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAK   68 (164)
Q Consensus        31 ~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~   68 (164)
                      ...+.+....|+-.++-+|--|++.+.-.+-..|....
T Consensus        73 ~~~~~~e~~~~l~~q~~eEaiH~~sYs~~~~tl~~~~~  110 (280)
T cd07911          73 AAEGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDD  110 (280)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             20375899999999999999999999999998467565


No 58 
>pfam04518 DUF582 Protein of unknown function, DUF582. This family contains several uncharacterized chlamydial proteins.
Probab=36.74  E-value=31  Score=15.09  Aligned_cols=56  Identities=16%  Similarity=0.256  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999--99999999999999815--99---47899999999999999999999999
Q gi|254780720|r    5 RDRVLNELMNM--EYVAQYHYMQAAAWAAS--HN---LDGCCNFLLKHAMEEHSHVIRIFKHL   60 (164)
Q Consensus         5 ~~~~Ln~qi~~--El~as~~Yl~~a~~~~~--~~---~~g~a~~f~~~a~EE~~HA~~l~~yi   60 (164)
                      -.+++|..|..  +|..+-.|..+|+|...  .|   +||-..-....-.+|+.++.+-+++-
T Consensus       158 aa~~~N~ll~~i~~F~ta~vYynl~sYl~Q~~~g~~~F~g~~~~a~~~l~~Ek~~~~~di~~~  220 (380)
T pfam04518       158 AANYGNDLLDIISSFQTASVYYNLASYLGQGKMGTNAFPGSYDEALAKLEKEKEQIRRDIKRC  220 (380)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             788767999999855475224537888535302321156629999999999999999999999


No 59 
>pfam10666 Phage_Gp14 Phage protein Gp14. This phage protein family is of unknown function but is expressed from within a cluster of tail- and base plate-producing genes.
Probab=34.47  E-value=33  Score=14.87  Aligned_cols=92  Identities=15%  Similarity=0.115  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHH
Q ss_conf             99999999999999999999815994789999999999---9999-9999999999539971437822572048898999
Q gi|254780720|r   10 NELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAM---EEHS-HVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGL   85 (164)
Q Consensus        10 n~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~---EE~~-HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~   85 (164)
                      |..||..+.-||+=+.++.-.-++|+.   .-+|..-.   |... .-.++-+|-.+.-|...+.....   --.++.++
T Consensus         4 nnviniqleesyqef~lgtelfrv~l~---d~mrr~wieadekyk~kl~kl~kyn~d~~~ems~~~y~~---l~~~v~ea   77 (140)
T pfam10666         4 NNVINIQLEESYQEFQLGTELFRVGLG---DKMRRKWIEADEKYKKKLEKLNKYNIDNTDEMSSEEYFT---LEEDVKEA   77 (140)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH---HHHHHHHH
T ss_conf             653655338888998520678541024---899999997009999999886204865434230888999---99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999
Q gi|254780720|r   86 FSLMYEHENKVTIAYDDAIETI  107 (164)
Q Consensus        86 ~~~al~~E~~vt~~~~~l~~~A  107 (164)
                      +..|++.=..--..+...+..|
T Consensus        78 l~~a~~ill~d~~afdkcya~c   99 (140)
T pfam10666        78 LTEAYAILLDDEKAFDKCYAQC   99 (140)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9998898826513488999999


No 60 
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=33.76  E-value=34  Score=14.80  Aligned_cols=108  Identities=10%  Similarity=-0.044  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC------CCCCHHHHHHHHH--------------HHHH
Q ss_conf             4789999999999999999999999995399714378225720------4889899999999--------------9999
Q gi|254780720|r   35 LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVI------SANDVEGLFSLMY--------------EHEN   94 (164)
Q Consensus        35 ~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~------~~~~~~e~~~~al--------------~~E~   94 (164)
                      =..+..-+.-+|.+++.||+.+.-|.+.+++...-......+.      .|..+.+.++..+              -.|-
T Consensus       128 ~~~i~~a~~f~a~D~Lr~aQ~i~~~~~~L~~~~~~~~~~~~k~~W~~dp~WQ~~R~~vE~~l~~~Dw~E~~vA~nlv~d~  207 (304)
T cd01058         128 STTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQGLRELVEKLLVTYDWGEAFVAQNLVFDP  207 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             09999999999888867999999999984656898772689998830840131899999998613559999999887998


Q ss_pred             HHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999-9999999997099889999999999999999999999999995288
Q gi|254780720|r   95 KVTIA-YDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGS  145 (164)
Q Consensus        95 ~vt~~-~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~  145 (164)
                      -+... +..+...|...+|..|..+......   ...++.++....+|.+-.
T Consensus       208 ll~~L~~~~f~~~a~~~Gd~~t~~l~~~~~~---d~~r~~~w~~alvk~~~~  256 (304)
T cd01058         208 LVGELVRRELDRLAASNGDTLTPLLTEFMLD---DAQRHRRWTDALVKTAAE  256 (304)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf             8799999999999998699513999999999---999999999999999981


No 61 
>pfam04332 DUF475 Protein of unknown function (DUF475). Predicted to be an integral membrane protein with multiple membrane spans.
Probab=32.97  E-value=35  Score=14.72  Aligned_cols=65  Identities=17%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             88989999999999999999999999999-97099889999999999999999999999999995288
Q gi|254780720|r   79 ANDVEGLFSLMYEHENKVTIAYDDAIETI-LAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIGS  145 (164)
Q Consensus        79 ~~~~~e~~~~al~~E~~vt~~~~~l~~~A-~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g~  145 (164)
                      .-+|.++++.|+..-....+.+.+.+..- .=-+=+-..-||+||++|  ++++++.++...+.+.|.
T Consensus        48 ~lgp~ea~~lAl~~p~~Y~~~l~~ahp~IaaFGG~FLlmvfL~fffde--k~~~Wl~~iE~~l~k~g~  113 (294)
T pfam04332        48 GLDPIEAMKLALENPDRYEELLTAAHPSIAAFGGMFLLMVFLDFFFDD--RDIKWLKWIERPLARIGK  113 (294)
T ss_pred             CCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC--CCCCEEHHHHHHHHHCCC
T ss_conf             889899999983697889999984368899885999999999870206--636543698799987277


No 62 
>pfam03202 Lipoprotein_10 Putative mycoplasma lipoprotein, C-terminal region.
Probab=32.85  E-value=13  Score=17.28  Aligned_cols=17  Identities=24%  Similarity=0.819  Sum_probs=8.4

Q ss_pred             HCCHHHHHHHHHHHHHH
Q ss_conf             09988999999999999
Q gi|254780720|r  110 EKDHQTFQFLQWFVKEQ  126 (164)
Q Consensus       110 ~~D~~t~~fl~~fl~EQ  126 (164)
                      ..|-+|..|++|||..+
T Consensus        16 ked~aTk~FV~W~l~~~   32 (134)
T pfam03202        16 KENAETQKFVNWFLNTE   32 (134)
T ss_pred             CCCHHHHHHHHHHHCCC
T ss_conf             55689999999996374


No 63 
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217   Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=28.97  E-value=34  Score=14.79  Aligned_cols=47  Identities=15%  Similarity=0.114  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf             47899999999999999999999999953997143782257204889
Q gi|254780720|r   35 LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISAND   81 (164)
Q Consensus        35 ~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~   81 (164)
                      +...|.|=-.-|.|-.+=|++++.||.+++|.+...=|=.||...++
T Consensus        91 ik~v~S~NiRIaRE~~G~A~~~~~yL~d~~~~~~NTLiIsPPq~GKT  137 (282)
T TIGR02858        91 IKNVASLNIRIAREVLGAADKILPYLVDRNGRVLNTLIISPPQCGKT  137 (282)
T ss_pred             EECCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf             10546421330200057756668877305894467888868898851


No 64 
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2).  This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=28.61  E-value=42  Score=14.27  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC-C--------
Q ss_conf             99999999999999999999999981599-4789999999999999999999999995399714378225-7--------
Q gi|254780720|r    6 DRVLNELMNMEYVAQYHYMQAAAWAASHN-LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEA-P--------   75 (164)
Q Consensus         6 ~~~Ln~qi~~El~as~~Yl~~a~~~~~~~-~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~-p--------   75 (164)
                      .+.|...+..|.-|--+|+...   +.+| .+    -|...+.-|..|+..+..-+...|-.....+-+. .        
T Consensus         2 ~~~L~~~~eeEklArdvY~~l~---~~~G~~~----~F~nI~~SE~~H~~al~~Ll~~y~l~~P~~~~~~~~f~~~~y~~   74 (135)
T cd01048           2 IAALLYALEEEKLARDVYLALY---EKFGGLR----PFSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQ   74 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             5789999999999999999999---9878863----28999999999999999999985999999877667567611789


Q ss_pred             --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --204889899999999999999999999999999
Q gi|254780720|r   76 --VISANDVEGLFSLMYEHENKVTIAYDDAIETIL  108 (164)
Q Consensus        76 --~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~  108 (164)
                        .....|..++++.....|..-+..|.++...+.
T Consensus        75 l~~~g~~Sl~~Al~vGv~iE~~dI~dl~~~l~~t~  109 (135)
T cd01048          75 LVEQGPKSLQDALEVGVLIEELDIADYDRLLERTQ  109 (135)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99875323999999999999962999999987658


No 65 
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872    This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=28.15  E-value=43  Score=14.22  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH--CCC-HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCC--CCCEECCCCCCCCCCCCH
Q ss_conf             9999999999999999981--599-47899999999-----9999999999999999539--971437822572048898
Q gi|254780720|r   13 MNMEYVAQYHYMQAAAWAA--SHN-LDGCCNFLLKH-----AMEEHSHVIRIFKHLTDLG--VEAKFSSIEAPVISANDV   82 (164)
Q Consensus        13 i~~El~as~~Yl~~a~~~~--~~~-~~g~a~~f~~~-----a~EE~~HA~~l~~yi~~rg--g~~~~~~i~~p~~~~~~~   82 (164)
                      |-.+..|...=.-.|.-.+  +++ +=|.|+++++.     -.+=++-+...|.|+..-|  -.+.+++-..-.++|.++
T Consensus        68 iv~Hsra~~~D~~~a~~~~Vd~i~~~~G~S~~~l~~~h~~~~~~al~~i~e~I~y~K~~Gphv~VRFtaED~~R~d~~~L  147 (355)
T TIGR02146        68 IVTHSRAVLDDIEVAVETEVDRIDVFFGVSKLLLKYKHRKDLEEALEIIAEVIEYAKSHGPHVKVRFTAEDTFRSDLDDL  147 (355)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf             56778999999877642278657874300588851025778899999999999999724882478864788851218999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780720|r   83 EGLFSLMYEH   92 (164)
Q Consensus        83 ~e~~~~al~~   92 (164)
                      ..+.+.+.+.
T Consensus       148 ~~v~k~a~~~  157 (355)
T TIGR02146       148 LKVYKTAKEA  157 (355)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999761


No 66 
>pfam02332 Phenol_Hydrox Methane/Phenol/Toluene Hydroxylase. Bacterial phenol hydroxylase is a multicomponent enzyme that catabolizes phenol and some of its methylated derivatives. This Pfam family contains both the P1 and P3 polypeptides of phenol hydroxylase and the alpha and beta chain of methane hydroxylase protein A.
Probab=26.83  E-value=45  Score=14.07  Aligned_cols=105  Identities=16%  Similarity=0.015  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCC-------------------CCH-HHHHHHHHHHHH
Q ss_conf             478999999999999999999999999539971437822572048-------------------898-999999999999
Q gi|254780720|r   35 LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISA-------------------NDV-EGLFSLMYEHEN   94 (164)
Q Consensus        35 ~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~-------------------~~~-~e~~~~al~~E~   94 (164)
                      =+++..-+--++.+|+.|++.++-++..+.+...-..- ..+..|                   .+. .-.+...+..|-
T Consensus       102 ~~~~~n~~~~~a~DelR~~Q~~~~~~~~l~~~~~~~~~-~~k~~w~~dp~wq~~R~~~E~~~~~~Dw~E~~va~nlv~e~  180 (233)
T pfam02332       102 APTIRNCATFQALDELRHLQRQAYFLHELAKADPDFDW-GQRAYWTNDPAWQGLRRLFEDILVTQDWVEAFIALNLVFEP  180 (233)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             89999999998879999999999999877522888684-89998861833789999999888607899999999888997


Q ss_pred             HHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999-99999999970998899999999999999999999999999952
Q gi|254780720|r   95 KVTIA-YDDAIETILAEKDHQTFQFLQWFVKEQHEEMALFRRILDKIRLI  143 (164)
Q Consensus        95 ~vt~~-~~~l~~~A~~~~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~  143 (164)
                      -++.. +..+...|...+|..|..++.....   ++.++.++....+|.+
T Consensus       181 ~~~~l~~~~~~~~A~~~GD~~~~~l~~s~q~---D~~Rh~~~~~alvk~~  227 (233)
T pfam02332       181 LFTNLVFVALAEDAAENGDTLTALLTSSIQT---DEARHARWGDALVKTA  227 (233)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_conf             5368999999999998699037999999998---9999999999999999


No 67 
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis protein PqqF; InterPro: IPR011844   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This family of metallopeptidases belong to MEROPS peptidase family M16, subfamily M16A (clan ME). In the subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (IPR011725 from INTERPRO), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases .; GO: 0008234 cysteine-type peptidase activity, 0008270 zinc ion binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=26.67  E-value=36  Score=14.67  Aligned_cols=54  Identities=15%  Similarity=0.094  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCEECCCCCCC-CCCCCHHHHH
Q ss_conf             99478999999999---999999999999999539971437822572-0488989999
Q gi|254780720|r   33 HNLDGCCNFLLKHA---MEEHSHVIRIFKHLTDLGVEAKFSSIEAPV-ISANDVEGLF   86 (164)
Q Consensus        33 ~~~~g~a~~f~~~a---~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~-~~~~~~~e~~   86 (164)
                      ..+||+|+|+.+-.   -|-..--+++|-|+..+||.|+=++..+-. .-|+=+-+.|
T Consensus        43 ~awPGLAHfLEHLlFlG~ErF~~d~rLM~wvQ~qGGQVNA~T~~r~t~fFFElpA~Al  100 (737)
T TIGR02110        43 SAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNASTLERTTDFFFELPAEAL  100 (737)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCHHHHHHHHHHH
T ss_conf             1466548899999730311145766620898623885100020134203455799999


No 68 
>PTZ00211 ribonucleotide reductase small subunit; Provisional
Probab=25.92  E-value=47  Score=13.97  Aligned_cols=60  Identities=15%  Similarity=0.092  Sum_probs=30.3

Q ss_pred             HHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             981599-4789999999999999999999999995399714378225720488989999999999999999
Q gi|254780720|r   29 WAASHN-LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTI   98 (164)
Q Consensus        29 ~~~~~~-~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~~~al~~E~~vt~   98 (164)
                      |+.+.| ++|++.-..--+.+|--|..-...-+...-..       .|+   ..+.++++.|.+.|+..+.
T Consensus       186 ~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e-------~~~---e~v~~~~~eAvelE~~f~~  246 (330)
T PTZ00211        186 WLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNK-------LPR---ERVQEIIKDAVEIEREFIC  246 (330)
T ss_pred             HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHHHHHHHHH
T ss_conf             999749741179988899820999999999999997562-------999---9999999999999999999


No 69 
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470   The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=25.89  E-value=47  Score=13.97  Aligned_cols=21  Identities=19%  Similarity=0.181  Sum_probs=17.4

Q ss_pred             HHHHHH-HHHHHHHHHHHCCCC
Q ss_conf             999999-999999999953997
Q gi|254780720|r   46 AMEEHS-HVIRIFKHLTDLGVE   66 (164)
Q Consensus        46 a~EE~~-HA~~l~~yi~~rgg~   66 (164)
                      +.|+|. ||++.++.|..||..
T Consensus       191 ~KEdM~~~a~~~vadLK~RGY~  212 (293)
T TIGR01582       191 FKEDMKERAEKRVADLKSRGYE  212 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7578999987888887634888


No 70 
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=25.76  E-value=47  Score=13.95  Aligned_cols=63  Identities=14%  Similarity=0.029  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             47899999999999999999999999953997-14378225720488989999999999999999999
Q gi|254780720|r   35 LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVE-AKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYD  101 (164)
Q Consensus        35 ~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~-~~~~~i~~p~~~~~~~~e~~~~al~~E~~vt~~~~  101 (164)
                      ++|++.-.+--+.+|.-|..-...-+..+-.. |.   +... .....+.++++.+.+.|+.-+..+.
T Consensus       176 m~g~~~~i~~I~rDE~lH~~f~~~l~~~l~~e~~~---~~~~-~~~~~i~~~~~eav~~E~~~~~~~~  239 (288)
T cd01049         176 MPGLAEIIELISRDESLHGDFACLLIRELLNENPE---LFTE-EFKEEVYELIKEAVELEKEFARDLL  239 (288)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             60099999999998999999999999998862988---5656-6799999999999999999999980


No 71 
>pfam00268 Ribonuc_red_sm Ribonucleotide reductase, small chain.
Probab=23.31  E-value=53  Score=13.67  Aligned_cols=20  Identities=20%  Similarity=0.210  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             47899999999999999999
Q gi|254780720|r   35 LDGCCNFLLKHAMEEHSHVI   54 (164)
Q Consensus        35 ~~g~a~~f~~~a~EE~~HA~   54 (164)
                      ++|++.-.+--+.+|--|..
T Consensus       180 m~g~~~~i~~I~RDE~lH~~  199 (281)
T pfam00268       180 MPGTCQSNELISRDEALHTD  199 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             34499999999998999999


No 72 
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=23.31  E-value=53  Score=13.67  Aligned_cols=126  Identities=16%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHH
Q ss_conf             99999999999999999999998159947899999999999999999999999953997143782257204889899999
Q gi|254780720|r    8 VLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLFS   87 (164)
Q Consensus         8 ~Ln~qi~~El~as~~Yl~~a~~~~~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~~   87 (164)
                      +|-++..-|+.|+..-+.+-.-+  .+-..+-..+-.-+.||+.|.....+.+..||....  ++++++.    ...+..
T Consensus        32 lLlDH~~CE~KAa~tAl~li~kY--~~~~~lv~km~~larEEL~HFeqV~eilq~RnI~~~--~i~asrY----a~~l~~  103 (203)
T COG4445          32 LLLDHLHCELKAAQTALNLIRKY--PSNTDLVDKMVLLAREELHHFEQVLEILQARNIPYV--PIPASRY----AKGLLA  103 (203)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHH----HHHHHH
T ss_conf             20356888888789999999983--426789999999999999999999999998399512--1795577----899999


Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999--999999999999970---------9988999999999999999999999999999528
Q gi|254780720|r   88 LMYEHENK--VTIAYDDAIETILAE---------KDHQTFQFLQWFVKEQHEEMALFRRILDKIRLIG  144 (164)
Q Consensus        88 ~al~~E~~--vt~~~~~l~~~A~~~---------~D~~t~~fl~~fl~EQ~eee~~~~~ll~~l~~~g  144 (164)
                      .+..+|-.  .-+.+-..+-.|++.         -|-....|....++   .|-+++++-+....-++
T Consensus       104 ~~rt~EPqrliD~Livga~IEARScERfa~LaphldeelakFY~gLl~---SEaRHfqdYl~LA~qy~  168 (203)
T COG4445         104 AVRTHEPQRLIDKLIVGAYIEARSCERFAALAPHLDEELAKFYKGLLR---SEARHFQDYLVLADQYF  168 (203)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf             987248199999999988876644888986423564999999999999---88899888999999980


No 73 
>TIGR02024 FtcD glutamate formiminotransferase; InterPro: IPR004227   This entry represents the formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD), which forms a homodimer, with each protomer being comprised of two subdomains. Tetrahydrofolate (THF)-dependent glutamate formiminotransferase is involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia; part of the process of regenerating THF. This model covers enzymes from metazoa as well as Gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype . The crystal structure of the enzyme has been studied in the context of the catalytic mechanism . ; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process.
Probab=22.24  E-value=55  Score=13.54  Aligned_cols=59  Identities=8%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC---CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999539971437822572---0488989999999999999999
Q gi|254780720|r   40 NFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPV---ISANDVEGLFSLMYEHENKVTI   98 (164)
Q Consensus        40 ~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~---~~~~~~~e~~~~al~~E~~vt~   98 (164)
                      +-.-+-+-.--.-|..|||--+.+|+||.+++..-.|   ..-.+..+|.+.|-+.=|.+-.
T Consensus        56 e~v~~A~~~~aK~A~eLIDm~~H~G~HPRMGA~DViPF~Pv~~~~~EECV~~A~~~Gkr~GE  117 (331)
T TIGR02024        56 EKVVNAALKLAKKAAELIDMRNHKGEHPRMGAVDVIPFIPVKDVTMEECVELAKELGKRLGE  117 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             89999999988786765300147877795244100053137898489999999986158566


No 74 
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193   This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=21.67  E-value=35  Score=14.72  Aligned_cols=17  Identities=12%  Similarity=0.319  Sum_probs=11.3

Q ss_pred             HHHHCCCCCHHHHHHHH
Q ss_conf             99952887516999999
Q gi|254780720|r  139 KIRLIGSGPHSRYMFDL  155 (164)
Q Consensus       139 ~l~~~g~~~~glyl~D~  155 (164)
                      .++.+...||||||+.-
T Consensus       108 ~i~~L~eGGLGLFLiet  124 (161)
T TIGR01924       108 DIDQLREGGLGLFLIET  124 (161)
T ss_pred             CHHHHHCCCCHHHHHHC
T ss_conf             75432017713664510


No 75 
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.67  E-value=57  Score=13.47  Aligned_cols=35  Identities=14%  Similarity=0.141  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             47899999999999999999999999953997143
Q gi|254780720|r   35 LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKF   69 (164)
Q Consensus        35 ~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~   69 (164)
                      ..-++.||+..|.=|-..|..|.+.....++....
T Consensus        21 ~~el~~f~kERa~IEe~YAK~L~kLakk~~~~~e~   55 (261)
T cd07648          21 VKELADFLRERATIEETYSKALNKLAKQASNSSQL   55 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999999999998410467775


No 76 
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT).  MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein.  The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.59  E-value=25  Score=15.68  Aligned_cols=39  Identities=15%  Similarity=0.076  Sum_probs=25.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf             599478999999999999999999999999539971437
Q gi|254780720|r   32 SHNLDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFS   70 (164)
Q Consensus        32 ~~~~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~   70 (164)
                      +..+|||+..|+..+.++-.+|..=..-.--+|+.+.++
T Consensus        88 ~k~~pG~~e~~r~~s~~~~~~a~lSR~~aGi~~~tlI~~  126 (152)
T cd00886          88 DKELPGFGEAFRALSLEETGTAMLSRAVAGIRGGTLIFN  126 (152)
T ss_pred             HHCCCCHHHHHHHHHHCCCCHHHEEHHHEEEECCEEEEE
T ss_conf             516965999999987553866312203138989999998


No 77 
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.20  E-value=61  Score=13.28  Aligned_cols=91  Identities=16%  Similarity=0.146  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             47899999999999999999999999953997143782257204889899999999999999999999999999709988
Q gi|254780720|r   35 LDGCCNFLLKHAMEEHSHVIRIFKHLTDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQ  114 (164)
Q Consensus        35 ~~g~a~~f~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~e~~~~al~~E~~vt~~~~~l~~~A~~~~D~~  114 (164)
                      ..-++.||+..|.=|...|..|.+.-...++.          ....++..++..... |.+....++.-....... +  
T Consensus        21 ckel~~f~kERa~IEe~YaK~L~kLsk~~~~~----------~e~Gtl~~sw~~~~~-e~e~~a~~H~~l~~~L~~-~--   86 (239)
T cd07647          21 CKELEDFLKQRAKAEEDYGKALLKLSKSAGPG----------DEIGTLKSSWDSLRK-ETENVANAHIQLAQSLRE-E--   86 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----------CCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-H--
T ss_conf             99999999998899999989999997144688----------888929999999999-999999999999999998-8--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999
Q gi|254780720|r  115 TFQFLQWFVKEQHEEMALFRRILDKI  140 (164)
Q Consensus       115 t~~fl~~fl~EQ~eee~~~~~ll~~l  140 (164)
                      ... +..|..+|.++-+.+.+...++
T Consensus        87 ~~~-~~~~~~~q~k~rK~~e~~~~K~  111 (239)
T cd07647          87 AEK-LEEFREKQKEERKKTEDIMKRS  111 (239)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899-9999999999999999899999


Done!