BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus
Liberibacter asiaticus str. psy62]
         (164 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 164

 Score =  343 bits (881), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL 60
           MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL
Sbjct: 1   MTNTRDRVLNELMNMEYVAQYHYMQAAAWAASHNLDGCCNFLLKHAMEEHSHVIRIFKHL 60

Query: 61  TDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ 120
           TDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ
Sbjct: 61  TDLGVEAKFSSIEAPVISANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQ 120

Query: 121 WFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164
           WFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS
Sbjct: 121 WFVKEQHEEMALFRRILDKIRLIGSGPHSRYMFDLEIEKIANKS 164


>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 463

 Score = 24.3 bits (51), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 131 ALFRRILDKIRLIGSGPHS 149
           ALF+ I + IR +GSGP S
Sbjct: 287 ALFK-IANDIRFLGSGPRS 304


>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 23.5 bits (49), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 38  CCNFLLKHAMEE--HSHVIRIFKHLTDLGV-EAKFSSI--EAPVISA 79
           C  +LL+ A EE  HSH  +    +T LG+ E +  ++  E P I+A
Sbjct: 113 CRQYLLRQAFEEAVHSHTFQYI--ITSLGLDEGELFNMYREVPSITA 157


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 23.5 bits (49), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 38  CCNFLLKHAMEE--HSHVIRIFKHLTDLGV-EAKFSSI--EAPVISA 79
           C  +LL+ A EE  HSH  +    +T LG+ E +  ++  E P I+A
Sbjct: 113 CRQYLLRQAFEEAVHSHTFQYI--ITSLGLDEGELFNMYREVPSITA 157


>537021.9.peg.74_1 
          Length = 196

 Score = 23.1 bits (48), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 38  CCNFLLKHAMEE--HSHVIRIFKHLTDLGV-EAKFSSI--EAPVISA 79
           C  +LL+ A EE  HSH  +    +T LG+ E +  ++  E P I+A
Sbjct: 113 CRQYLLRQAFEEAVHSHTFQYI--ITSLGLDEGELFNMYREVPSITA 157


>gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 351

 Score = 22.7 bits (47), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 79  ANDVEGLFSLMYEHENKVTIAYDDAIETILAEKDHQTFQFLQWFVKEQHEEMAL 132
           A DV G+         K+ +A DD +    AE D +   F     K   EE++L
Sbjct: 96  AGDVTGVA--------KLKLAVDDVLSMQFAESDVRALAFTVPSSKLSVEELSL 141


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,902
Number of Sequences: 1233
Number of extensions: 3757
Number of successful extensions: 11
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 328,796
effective HSP length: 68
effective length of query: 96
effective length of database: 244,952
effective search space: 23515392
effective search space used: 23515392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 35 (18.1 bits)