HHsearch alignment for GI: 254780721 and conserved domain: COG1459
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=98.85 E-value=1.1e-05 Score=55.73 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999999996599989999999986399589999999999997199589999999
Q gi|254780721|r 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275 (329)
Q Consensus 218 l~~e~~~~~~~~~~G~~~~~Al~~~a~r~~~~~~~~~~~~l~~~~~~G~~l~~~L~~~ 275 (329)
T Consensus 266 f~rtl~~L---l~sGvpl~~aL~i~~~~~~~~~~~~~~~~~~~~v~~G~sl~~al~~~ 320 (397)
T COG1459 266 FARTLGTL---LSSGVPLLEALDIAAETVSNAFLRQALEEIIQEVREGGSLSQALEKT 320 (397)
T ss_pred HHHHHHHH---HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 99999999---97898399999998762374999999999999998575699998736