HHsearch alignment for GI: 254780721 and conserved domain: TIGR02120
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850 This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=98.47 E-value=0.00014 Score=48.45 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999999999999999974996899999999840778778999999999999659998999999998639958999
Q gi|254780721|r 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253 (329)
Q Consensus 174 ~r~~~i~~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~~~Al~~~a~r~~~~~~~~ 253 (329)
T Consensus 69 ~~~~ls~~~la~~TRQLATLl~AglPLeeaL~~l~~Q~--e~~~~~~~l~~iR~~v~eG~~La~AL~~~P~~F~-----~ 141 (414)
T TIGR02120 69 LRRRLSRAELALFTRQLATLLGAGLPLEEALAALLEQA--EKPRLKSVLAAIRSRVLEGKSLADALAQEPRLFP-----P 141 (414)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC-----H
T ss_conf 16898999999999999999985340999999999625--9578999999999998618116899850889988-----7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999997199589999999999999999999999984333699999999999999999977999999997349
Q gi|254780721|r 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329 (329)
Q Consensus 254 ~~~~l~~~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~~~~k~~~~~il~~~p~~~~~~~~P~~~~~~~~~~~~ 329 (329)
T Consensus 142 lYralV~AGE~SG~L~~VL~RLADylE~rq~lr~Ki~~AliYPa~l~-vVa~~vv~~Ll~~VVPkvV~~F~~~~q~ 216 (414)
T TIGR02120 142 LYRALVAAGEASGALDAVLERLADYLEERQALRSKITTALIYPAVLT-VVAIGVVIFLLAYVVPKVVEQFAHMKQT 216 (414)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCEECHHHCCCCC
T ss_conf 88999996124788246899998899999999999999876589999-9999999999942044403102319978