HHsearch alignment for GI: 254780721 and conserved domain: TIGR02833

>TIGR02833 spore_III_AB stage III sporulation protein AB; InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species..
Probab=93.83  E-value=0.45  Score=25.24  Aligned_cols=147  Identities=22%  Similarity=0.256  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999999999999999999999999997499-689999999984077877899999999999
Q gi|254780721|r  150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI-SIDQALRRVAEDIGGQSVPLSEEMLLTIAE  228 (329)
Q Consensus       150 ~~~~~~~~~~g~~~P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~~aG~-~l~~Al~~va~e~~~~~~~l~~e~~~~~~~  228 (329)
T Consensus         6 ~Liv~~~T~iGF~~-----a~r~~~R~~~L-r~l~~AL~~L~~EI~Y~~TPL~ea~~~iA~~~---~~pv~~lF~~~s~~   76 (170)
T TIGR02833         6 ILIVLSSTWIGFEY-----ANRFKERPRQL-RQLKNALQSLEAEIVYGHTPLPEAFKKIAKKS---PKPVNKLFESASER   76 (170)
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC---CCHHHHHHHHHHHH
T ss_conf             99999767999999-----98898879999-99999999999730178764689999999741---52489999999987


Q ss_pred             HHCC--CCHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9659--9989999999986---------399589999999999997199--58999999999999999999999998433
Q gi|254780721|r  229 LSFL--PNRQVAFENFYNR---------TQMDCVRNATQALIQSDRYGT--SIGDSLRVLVSETRSERLMEAEKKAASLG  295 (329)
Q Consensus       229 ~~~G--~~~~~Al~~~a~r---------~~~~~~~~~~~~l~~~~~~G~--~l~~~L~~~a~~~r~~~~~~~e~~a~~~~  295 (329)
T Consensus        77 L~~~~~~~v~~Aw~~~l~e~~~~~~L~~~e~EILl~fg~~LG~~D~~~Q~K~~~Lt~~~L-----~~~l~eA~~~-~~kn  150 (170)
T TIGR02833        77 LKEGEGETVYEAWKKALNEVWKQTALKKSEKEILLQFGKTLGESDREGQQKHINLTLEHL-----ERQLAEAEDE-QKKN  150 (170)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHC
T ss_conf             226899998889999998768852337236899999878725225788999999999999-----9989999999-9855


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             369999999999999999
Q gi|254780721|r  296 PKLTVPMIIFFLPVLILV  313 (329)
Q Consensus       296 ~k~~~~~il~~~p~~~~~  313 (329)
T Consensus       151 ~Km~~~--LGvl~Gl~iv  166 (170)
T TIGR02833       151 EKMYRY--LGVLVGLLIV  166 (170)
T ss_pred             HHHHHH--HHHHHHHHHH
T ss_conf             468887--9999999999