HHsearch alignment for GI: 254780721 and conserved domain: TIGR02833
>TIGR02833 spore_III_AB stage III sporulation protein AB; InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species..
Probab=93.83 E-value=0.45 Score=25.24 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999997499-689999999984077877899999999999
Q gi|254780721|r 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI-SIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228 (329)
Q Consensus 150 ~~~~~~~~~~g~~~P~~~l~~~~~~r~~~i~~~lP~~ld~l~~~~~aG~-~l~~Al~~va~e~~~~~~~l~~e~~~~~~~ 228 (329)
T Consensus 6 ~Liv~~~T~iGF~~-----a~r~~~R~~~L-r~l~~AL~~L~~EI~Y~~TPL~ea~~~iA~~~---~~pv~~lF~~~s~~ 76 (170)
T TIGR02833 6 ILIVLSSTWIGFEY-----ANRFKERPRQL-RQLKNALQSLEAEIVYGHTPLPEAFKKIAKKS---PKPVNKLFESASER 76 (170)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC---CCHHHHHHHHHHHH
T ss_conf 99999767999999-----98898879999-99999999999730178764689999999741---52489999999987
Q ss_pred HHCC--CCHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9659--9989999999986---------399589999999999997199--58999999999999999999999998433
Q gi|254780721|r 229 LSFL--PNRQVAFENFYNR---------TQMDCVRNATQALIQSDRYGT--SIGDSLRVLVSETRSERLMEAEKKAASLG 295 (329)
Q Consensus 229 ~~~G--~~~~~Al~~~a~r---------~~~~~~~~~~~~l~~~~~~G~--~l~~~L~~~a~~~r~~~~~~~e~~a~~~~ 295 (329)
T Consensus 77 L~~~~~~~v~~Aw~~~l~e~~~~~~L~~~e~EILl~fg~~LG~~D~~~Q~K~~~Lt~~~L-----~~~l~eA~~~-~~kn 150 (170)
T TIGR02833 77 LKEGEGETVYEAWKKALNEVWKQTALKKSEKEILLQFGKTLGESDREGQQKHINLTLEHL-----ERQLAEAEDE-QKKN 150 (170)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHC
T ss_conf 226899998889999998768852337236899999878725225788999999999999-----9989999999-9855
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 369999999999999999
Q gi|254780721|r 296 PKLTVPMIIFFLPVLILV 313 (329)
Q Consensus 296 ~k~~~~~il~~~p~~~~~ 313 (329)
T Consensus 151 ~Km~~~--LGvl~Gl~iv 166 (170)
T TIGR02833 151 EKMYRY--LGVLVGLLIV 166 (170)
T ss_pred HHHHHH--HHHHHHHHHH
T ss_conf 468887--9999999999