HHsearch alignment for GI: 254780721 and conserved domain: pfam00482
>pfam00482 GSPII_F Bacterial type II secretion system protein F domain. The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae. This domain seems to show some similarity to pfam00664, but this may just be due to similarities in the TM helices (personal obs: C Yeats).
Probab=99.39 E-value=2.8e-11 Score=92.71 Aligned_cols=123 Identities=23% Similarity=0.266 Sum_probs=109.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999974996899999999840778778999999999999659998999999998639958999999999999719
Q gi|254780721|r 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265 (329)
Q Consensus 186 ~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~~~Al~~~a~r~~~~~~~~~~~~l~~~~~~G 265 (329)
T Consensus 1 fl~~l~~~~~sG~~l~~al~~~~~~~--~~~~l~~~~~~i~~~l~~G~~~~~al~----~~~~~~~~~~~~~~~~~~~~g 74 (125)
T pfam00482 1 FLRQLATLLRAGLPLLEALEILAEEA--ENGPLREELKRIRERLREGGSLSEALA----RTPLSEFPPLLVALIAAGESG 74 (125)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCHHHHHHH----HCCCCCCCHHHHHHHHHHHHC
T ss_conf 98989999986998999999998664--898999999999999980860999997----667112999999999999875
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9589999999999999999999999984333699999999999999999
Q gi|254780721|r 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314 (329)
Q Consensus 266 ~~l~~~L~~~a~~~r~~~~~~~e~~a~~~~~k~~~~~il~~~p~~~~~~ 314 (329)
T Consensus 75 g~l~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~ 123 (125)
T pfam00482 75 GNLAEVLERLADYLEERRELRRKILAALLYPLILLVVALLVLLILLAIL 123 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 8599999999999999999999999999989999999999999998300