HHsearch alignment of GI: 254780721 and MMDB domain: 3c1q_A_
>3c1q_A (A:) General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=99.26 E-value=1.2e-10 Score=88.04 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999999974996899999999840778778999999999999659998999999998639958999999999
Q gi|254780721|r 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259 (329)
Q Consensus 180 ~~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~~~Al~~~a~r~~~~~~~~~~~~l~ 259 (329)
..++|++++.++.++++|+|+.+|+..++++ ..++++++++..+.++++.|.++.+||.+++.+++ .++..++
T Consensus 11 ~~~~~~f~~~l~~ll~~G~~l~~al~~~~~~--~~~~~l~~~~~~i~~~l~~G~~~~~Al~~~~~~~~-----~~~~~~i 83 (123)
T 3c1q_A 11 TPDLALITRQLATLVQSGXPLEECLRAVAEQ--SEKPRIRTXLVAVRAKVTEGYTLSDSLGDYPHVFD-----ELFRSXV 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHTTCCHHHHHTTCTTTSC-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-----HHHHHHH
T ss_conf 9999999999999998699899999999714--41289999999999999845539999987545586-----9999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99971995899999999999999999999999843
Q gi|254780721|r 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294 (329)
Q Consensus 260 ~~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~~ 294 (329)
.+.+.||+++++|+..++.++++...+.+.+....
T Consensus 84 ~~ge~~G~L~~~l~~~a~~~~~~~~~~~~~~~~l~ 118 (123)
T 3c1q_A 84 AAGEKSGHLDSVLERLADYAENRQKXRSKLQQASE 118 (123)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987477999999999999999999999999999