HHsearch results for GI: 254780721 and protein with PDBid: 3c1q_A
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=98.65 E-value=7.2e-07 Score=62.12 Aligned_cols=106 Identities=14% Similarity=0.165 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999749968999999998407787789999999999996599989999999986399589999999999
Q gi|254780721|r 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260 (329)
Q Consensus 181 ~~lP~~ld~l~~~~~aG~~l~~Al~~va~e~~~~~~~l~~e~~~~~~~~~~G~~~~~Al~~~a~r~~~~~~~~~~~~l~~ 260 (329)
.++..|...++..+++|+|+.+|++.+++.. .++.+++.+..+..+++.|.++.+|+.......| .+...++.
T Consensus 12 ~~l~~f~~~La~Ll~sGv~l~~aL~~~~~~~--~~~~~~~~~~~i~~~l~~G~~ls~Al~~~~~~f~-----~~~i~mi~ 84 (123)
T 3c1q_A 12 PDLALITRQLATLVQSGMPLEECLRAVAEQS--EKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD-----ELFRSMVA 84 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHTTCCHHHHHTTCTTTSC-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-----HHHHHHHH
T ss_conf 9999999999999986998999999997144--1289999999999999845539999987545586-----99999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997199589999999999999999999999984
Q gi|254780721|r 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293 (329)
Q Consensus 261 ~~~~G~~l~~~L~~~a~~~r~~~~~~~e~~a~~ 293 (329)
+-+.+|++.++|+.+++..+++...+.+.+..+
T Consensus 85 ~GE~sG~L~~~l~~la~~~e~~~~~~~kik~A~ 117 (123)
T 3c1q_A 85 AGEKSGHLDSVLERLADYAENRQKMRSKLQQAS 117 (123)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998747799999999999999999999999999