BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780721|ref|YP_003065134.1| pilus component protein
[Candidatus Liberibacter asiaticus str. psy62]
(329 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040398|gb|ACT57194.1| pilus component protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 329
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI
Sbjct: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR
Sbjct: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK
Sbjct: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE
Sbjct: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV
Sbjct: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
PMIIFFLPVLILVIIGPAILSIIDTMKDH
Sbjct: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
>gi|13474665|ref|NP_106234.1| hypothetical protein mlr5604 [Mesorhizobium loti MAFF303099]
gi|14025420|dbj|BAB52020.1| mlr5604 [Mesorhizobium loti MAFF303099]
Length = 339
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 148/324 (45%), Positives = 219/324 (67%), Gaps = 3/324 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M L +A+ A+++F+ ++ + +P+ G +L+ RMKSVA+ER+ LR +Q
Sbjct: 1 MTEQVIKSLTDPSLLIALLVAIAVFATVFTL-LPAFGGNQLKARMKSVALERDELRAKQR 59
Query: 61 TSLQ--KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L D LR + S +RN V +L+L+ L DE+ + KL+ AGFR + L L
Sbjct: 60 ARLASEADRRRKGLREQQSVGMRNIVDRLDLRRALADESTLQKLKVAGFRGQNPLTRFLF 119
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV+P + LG+++IF L + P +R+ IL+ Y GF AP V+++N KR+ S
Sbjct: 120 FRLVLPFVGFALGLVYIFVLGGLPDKPLVIRLFVCILVAYGGFYAPVVYVNNRATKRKQS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ AWPDALDL+LICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+L R+ A
Sbjct: 180 IQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLQERKQA 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+EN NRT ++ V++ +QAL+Q++RYGT + +LRVL +E+R +R+ AEKKAA+L PKL
Sbjct: 240 YENLANRTGLESVKSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAAEKKAAALPPKL 299
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
TVPMI+FFLPVL +I+GPA + +
Sbjct: 300 TVPMILFFLPVLFAIILGPAGIQV 323
>gi|239833232|ref|ZP_04681561.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825499|gb|EEQ97067.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 333
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 155/323 (47%), Positives = 213/323 (65%), Gaps = 1/323 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + V++F+ + +++P L L+ RMKSVA ERE +R ++
Sbjct: 1 MFSLLTQKLSDPQFLIGALIMVAVFATVVTILLPVLSGSALKSRMKSVATEREAIRSRER 60
Query: 61 TSLQKDS-ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
L +S LR + +R FV+KL+LK L DE V LR AGFR + LNI L +
Sbjct: 61 ARLAAESDRRGSLRHQQKPGIREFVEKLDLKRALADEKTVASLRQAGFRGQNPLNIFLFL 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R V+P + + I+IF L + F +R+ I GY GF AP++++SN KR+ SI
Sbjct: 121 RFVLPFGAMAIAAIYIFVLGVLADQTFFVRLLVCIFAGYAGFYAPNLYVSNRATKRKQSI 180
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+RAWPDALDL+LICVESG+S + A RRVA++IG QSV L+EE++LT AELSFLP R+ A+
Sbjct: 181 RRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNAELSFLPERRQAY 240
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN NRT ++ V++ TQALIQ++RYGT + +LR L E+R RL+EAEKKAA+L PKLT
Sbjct: 241 ENLANRTGLEPVKSVTQALIQAERYGTPVAQALRTLSQESRDLRLLEAEKKAAALPPKLT 300
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
VPMI+FFLPVL +VI+GPA + I
Sbjct: 301 VPMIVFFLPVLFIVILGPAFIQI 323
>gi|153008064|ref|YP_001369279.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559952|gb|ABS13450.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 333
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 153/323 (47%), Positives = 216/323 (66%), Gaps = 1/323 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + V++F+ + +++P L L+ RMKSVA ERE +R ++
Sbjct: 1 MFSLLTQKLTDPQFLIGALITVAVFATVVTILMPVLSGSALKSRMKSVATEREAIRSRER 60
Query: 61 TSLQKDS-ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
L +S + LR + + +R FV++L+LK L DE + LR AGFR + LNI L +
Sbjct: 61 ARLAAESDRRNSLRHQQKQGIREFVERLDLKRALADEKTIASLRQAGFRGQNPLNIFLFL 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R V+P +++ I+IF L + F +R+ I GY GF AP++++SN KR+ SI
Sbjct: 121 RFVLPFGAMLIAAIYIFMLGVLADQTFFVRLLVCIFAGYAGFYAPNLYVSNRATKRKQSI 180
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+RAWPDALDL+LICVESG+S + A RRVA++IG QSV L+EE++LT AELSFLP R+ A+
Sbjct: 181 RRAWPDALDLMLICVESGMSTEAAFRRVADEIGIQSVELAEELMLTNAELSFLPERRQAY 240
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
EN NRT +D V++ TQALIQ++RYGT + +LR L E+R RL++AEKKAA+L PKLT
Sbjct: 241 ENLANRTGLDPVKSVTQALIQAERYGTPVSQALRTLSQESRDLRLLDAEKKAAALPPKLT 300
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
VPMI+FFLPVL +VI+GPA + I
Sbjct: 301 VPMIVFFLPVLFIVILGPAFIQI 323
>gi|209551764|ref|YP_002283681.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537520|gb|ACI57455.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 328
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 175/328 (53%), Positives = 237/328 (72%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALLVAIAVFATFYTIAVPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ ++ + + LR+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTETGAGKASLRSQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLPERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVSDKF 328
>gi|328545274|ref|YP_004305383.1| hypothetical protein SL003B_3658 [polymorphum gilvum SL003B-26A1]
gi|326415016|gb|ADZ72079.1| Hypothetical transmembrane protein [Polymorphum gilvum SL003B-26A1]
Length = 325
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 153/324 (47%), Positives = 220/324 (67%), Gaps = 3/324 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
F +++ +A+ T V++ ++ +V+P L+ RMK+VA+ERE +R ++ L
Sbjct: 3 FSDLANSQMVIAVLTMVAVAGTVFTLVMPVFERDGLKSRMKTVALEREKIRARERARLAT 62
Query: 66 DSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ +R LR + K ++N V KLNL+ L DEN +KLR AG+R L L R+V+
Sbjct: 63 EKGDTRVSLRNQPKKQVKNLVDKLNLRTALADENTQDKLRMAGYRGTGPLYTFLFARIVM 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+I ++ + ++F + P +V A + +G +G AP+V+I N + KRQ SI+RAW
Sbjct: 123 PLILFVIALFYVFAFLPAT-LPSFTKVCAALFVGGIGVFAPNVYIQNRITKRQQSIRRAW 181
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+LICVESG+SI+ A R+VA++IG QS+PL+EE+ LT AELSFL R+ A+ NF
Sbjct: 182 PDALDLMLICVESGMSIEAAFRKVADEIGIQSIPLAEELTLTNAELSFLQERRQAYLNFA 241
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +D V+N T ALIQ++RYGT IG +LRV+ + R +R+ EAEKKAASL PKLTVPMI
Sbjct: 242 KRTGVDGVKNVTMALIQAERYGTPIGHALRVMADDNREQRMQEAEKKAASLPPKLTVPMI 301
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+FFLPVL VI+GPA++ II T +
Sbjct: 302 VFFLPVLFFVIMGPAVMQIIATFR 325
>gi|15887568|ref|NP_353249.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155105|gb|AAK86034.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 328
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 167/328 (50%), Positives = 232/328 (70%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F + +AI +++F+ +Y +++P L +L KRMK+V+ ERE++R ++
Sbjct: 1 MTGDLFSRLTDPQTIIAILVTLAVFATLYTLIMPFLERKDLAKRMKAVSSERELIRSRER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L + R LR ++KS R V+K NL+ L D+N +NKLRAAGFRS+ +LN L
Sbjct: 61 ERLATVTRDGRTSLRGNNNKSARRIVEKFNLREALADQNTMNKLRAAGFRSQNALNTFLA 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R V+P IFL + W+F L + F +R+ AV++ GY+GF AP++++SN + KRQ+S
Sbjct: 121 ARFVLPFIFLAVAFTWVFVLGNLADKAFVVRLMAVLVFGYIGFYAPNIYVSNRMTKRQAS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LIC+ESG+S++ A+RRVAE++G QS L+EEM+LT AELSFL +R+ A
Sbjct: 181 IKRAWPDALDLMLICIESGVSMESAMRRVAEEMGEQSPELAEEMILTTAELSFLQDRRTA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
ENF RTQ+D V++ QALIQ++RYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMIIFFLPVLI VI+GPA + + DT
Sbjct: 301 TVPMIIFFLPVLIAVILGPAGIRVADTF 328
>gi|222084474|ref|YP_002543003.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721922|gb|ACM25078.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 325
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 160/318 (50%), Positives = 229/318 (72%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ +A+ A+++F+ Y + +P L G+L KRMK+V+ ERE +R ++ L D +
Sbjct: 8 LTDPGMILAVFVAIAVFATFYTIAVPFLERGDLNKRMKAVSTEREQIRARERARLNTDGS 67
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ LR++++K++R V++ NL+ LVD N VN+LRAAG RSE +LN+ LV R ++P +FL
Sbjct: 68 KASLRSQNNKNVRQIVERFNLRNALVDTNTVNRLRAAGLRSENALNMFLVARFLLPFLFL 127
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + +FG PF R+ VI Y+GF +P+++ISN V KRQ SIKRAWPDALD
Sbjct: 128 AVAVFLVFGLGYFAAKPFAFRLLGVIGTAYLGFYSPNIYISNRVTKRQKSIKRAWPDALD 187
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+LICVESGISI+ +RRV+E++ QS L+EEM+LT AELSFL +R+ AF+N RTQ+
Sbjct: 188 LMLICVESGISIEAGMRRVSEEMAEQSPALAEEMVLTTAELSFLQDRRTAFDNLAARTQI 247
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V++ TQALIQ++RYGT + +LRV+ E R ER+ EAEKKAA+L PKLTVPMI+FFLP
Sbjct: 248 EIVKSVTQALIQAERYGTPVSQALRVMAQEGRDERMNEAEKKAAALPPKLTVPMIVFFLP 307
Query: 309 VLILVIIGPAILSIIDTM 326
VL+ VI+GPAI+ ++D
Sbjct: 308 VLMAVILGPAIIQVMDKF 325
>gi|260461944|ref|ZP_05810189.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032191|gb|EEW33457.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 339
Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats.
Identities = 147/324 (45%), Positives = 217/324 (66%), Gaps = 3/324 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M L +A+ A+++F+ ++ + +P+ +L+ RMKSVA+ER+ LR +Q
Sbjct: 1 MTDQVIKSLTDPSLLIALLVAIAVFATVFTL-LPAFSGNQLKSRMKSVALERDELRAKQR 59
Query: 61 TSLQ--KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L D LR S +RN V +L+L+ L DE+ + KL+ AGFR + L L
Sbjct: 60 ARLATEADRRRKGLREEQSVGMRNIVDRLDLRRALADESTLQKLKVAGFRGQNPLTRFLF 119
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV+P + L L +++IF L + P +R+ IL+ Y GF AP V+++N KR+ S
Sbjct: 120 FRLVLPFVGLALALVYIFVLGGLPDKPLVIRLFVCILVAYAGFYAPVVYVNNRATKRKQS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ AWPDALDL+LICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+L R+ A
Sbjct: 180 IQMAWPDALDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLQERKQA 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+EN +RT ++ VR+ +QAL+Q++RYGT + +LRVL +E+R +R+ AEKKAA+L PKL
Sbjct: 240 YENLASRTGLESVRSVSQALVQAERYGTPVAHALRVLAAESRDQRMNAAEKKAAALPPKL 299
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
TVPMI+FFLPVL +I+GPA + +
Sbjct: 300 TVPMILFFLPVLFAIILGPAGIQV 323
>gi|241207162|ref|YP_002978258.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861052|gb|ACS58719.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 328
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 172/328 (52%), Positives = 235/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALFVAIAVFATFYTIAIPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ ++ + + LR ++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTETGAGKASLRNQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L +W+FG L E +R+ AVI +GY+GF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLTLAAVWVFGLGNLAEKGTPIRLFAVIGVGYLGFYAPNIFISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS L+EEM+LT AELSFLP+R+ A
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTAELSFLPDRRAA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|116249986|ref|YP_765824.1| component of pilus protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115254634|emb|CAK05708.1| putative component of pilus protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 328
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 171/328 (52%), Positives = 236/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALLVAIAVFATFYTIAVPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ ++ + + LR+++++S+R V++ NL+ LVDEN +NKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTETGAGKASLRSQNNRSVRQIVERFNLRKALVDENTINKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI +GY+GF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLAEKGTPIRLFAVIGVGYLGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS L+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|319785603|ref|YP_004145079.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171491|gb|ADV15029.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 340
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 147/324 (45%), Positives = 213/324 (65%), Gaps = 3/324 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M +A+ A+++F+ ++ + +P+ G +L+ RMKSVA+ER+ LR QQ
Sbjct: 1 MTEQVIKTLTDPSFLIAMLVAIAVFATVFTL-LPAFGGNQLKSRMKSVALERDELRAQQR 59
Query: 61 TSLQ--KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L D LR S +RN V +L+L+ L DE + KL+ AGFR + L L
Sbjct: 60 ARLAVEADRRRKGLREEQSIGMRNIVDRLDLRRALADEGTLQKLKVAGFRGQNPLTRFLF 119
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
RLV+P + L I+IF L + P +R+ IL+ Y GF AP ++++N KR+ S
Sbjct: 120 FRLVLPFVGFALAAIYIFVLGGLPDKPLVIRLFVCILVAYGGFYAPVIYVNNRATKRKQS 179
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ AWPD LDL+LICVESG+S++ ALR+VA++IG QSV L+EE +LT AELS+LP R+ A
Sbjct: 180 IQMAWPDGLDLMLICVESGMSVEAALRKVADEIGAQSVALAEEFILTNAELSYLPERKQA 239
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+EN +RT +D V++ +QAL+Q++RYGT + +LRVL +E+R R+ AEKKAA+L PKL
Sbjct: 240 YENLASRTGLDSVKSVSQALVQAERYGTPVAHALRVLAAESRDMRMNAAEKKAAALPPKL 299
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
TVPMI+FFLPVL +I+GPA + +
Sbjct: 300 TVPMILFFLPVLFAIILGPAGIQV 323
>gi|325291654|ref|YP_004277518.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059507|gb|ADY63198.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 328
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 162/328 (49%), Positives = 231/328 (70%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F + +AI +++F+ +Y +++P + KRMK+V+ ER+++R ++
Sbjct: 1 MTGSLFSSLTDPQTIIAILVTLAVFATLYTLIMPLFERKDFAKRMKAVSSERDLIRSRER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
L + + LR ++KS R V+K NL+ L D+N +NKLRAAGFRS+ +LN L
Sbjct: 61 ERLAAATRDGKASLRGNNNKSARRIVEKFNLQEALADKNTMNKLRAAGFRSQNALNTFLA 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R V+P +FL L W+F L + F +R+ AV++ GY+GF AP++++SN + KRQ+S
Sbjct: 121 ARFVLPFVFLALAFTWVFVLGNLADKAFVVRLMAVLIFGYLGFYAPNIYVSNAMNKRQAS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+RAWPDALDL+LIC+ESG+S++ A+RRVAE++G QS L+EEM+LT AELSFL +R++A
Sbjct: 181 IRRAWPDALDLMLICIESGVSMEAAMRRVAEEMGEQSPELAEEMMLTTAELSFLQDRRIA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
ENF RTQ+D V++ QALIQ++RYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENFGMRTQLDGVKSVVQALIQAERYGTPLAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMIIFFLPVLI VI+GPA + + DT
Sbjct: 301 TVPMIIFFLPVLIAVILGPAGIRVADTF 328
>gi|150398546|ref|YP_001329013.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030061|gb|ABR62178.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 327
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 159/323 (49%), Positives = 227/323 (70%), Gaps = 2/323 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + VA+ ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L
Sbjct: 5 IETLTDPNIIVAVLVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNT 64
Query: 66 DSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ + R LRT+ + S+R V++LNL+ LVD+N VN+L+ AGFRS+ +LN L R +
Sbjct: 65 EAPTGRASLRTQHNSSVREVVERLNLRKALVDDNTVNRLKTAGFRSQNALNTFLFARFCL 124
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P +FL + +++IF + P +RV I YVGF AP+++I+N + KRQ SI+RAW
Sbjct: 125 PFLFLTVSVLYIFVLGNFADKPVMVRVSFAIGFAYVGFYAPNIFIANAISKRQHSIRRAW 184
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLLLICVESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R+VA EN
Sbjct: 185 PDALDLLLICVESGVSMELAMRRVADEIAVQSQPLAEELVLTTAELSFLPERRVALENLG 244
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT ++ V++ QALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPMI
Sbjct: 245 RRTGLEEVKSVMQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMI 304
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+FFLPVL+ VI+GPA + + D
Sbjct: 305 LFFLPVLVAVILGPAGIQVADKF 327
>gi|190889886|ref|YP_001976428.1| pilus component protein [Rhizobium etli CIAT 652]
gi|190695165|gb|ACE89250.1| pilus component protein [Rhizobium etli CIAT 652]
Length = 328
Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats.
Identities = 176/328 (53%), Positives = 236/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPGMLIAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNANPGAGKASLRSQNNRSVRQIVERFNLRQALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLAERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|222147177|ref|YP_002548134.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734167|gb|ACM35130.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 326
Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 154/326 (47%), Positives = 223/326 (68%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M L +A+ A+++F+ +Y ++ P L +L KRMK+V+ ERE++R ++
Sbjct: 1 MSADLAATLTNPTLLIAVLVAIAVFATLYTLISPLLERSDLNKRMKAVSSERELIRARER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ + LR D+ S R V++ NL+ LVD+ +++L+ AG RS+ +LN+ L R
Sbjct: 61 ARMNSEGGRGSLRNTDNSSARKIVERFNLRKALVDDKTMDRLKTAGLRSQNALNMFLTAR 120
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++P +FL L WIF + PF +R A ++ GYVGF P+++ISN + KRQ SI+
Sbjct: 121 FLLPFLFLALATTWIFALHNMQSRPFAVRFLAAVVAGYVGFYLPNIYISNRITKRQHSIR 180
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDL+LICVESG+S++ A+RRVA+++ QS L+EEM+LT AELSFL +R+ A+E
Sbjct: 181 RAWPDALDLMLICVESGMSMEAAMRRVADEMASQSPALAEEMVLTTAELSFLQDRRTAYE 240
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N NRTQ++ V++ QALIQ++RYGT IG +LRVL E R ER+ AEKKAA+L PKLTV
Sbjct: 241 NLGNRTQLEIVKSVCQALIQAERYGTPIGQALRVLAQEGRDERMNAAEKKAAALPPKLTV 300
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
PMI+FFLPVL+ VI+GPA + + D
Sbjct: 301 PMILFFLPVLVAVILGPAGIRVSDRF 326
>gi|327194689|gb|EGE61535.1| pilus component protein [Rhizobium etli CNPAF512]
Length = 328
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 177/328 (53%), Positives = 236/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPGMLIAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ D + + LR+++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNADPGAGKASLRSQNNRSVRQIVERFNLRQALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L E +R+ AVI IGYVGF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGNLAERGMPIRLFAVIGIGYVGFYAPNIYISNRMGKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LENLAMRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADKF 328
>gi|15963899|ref|NP_384252.1| hypothetical protein SMc02822 [Sinorhizobium meliloti 1021]
gi|307320431|ref|ZP_07599848.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|15073074|emb|CAC41533.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306893997|gb|EFN24766.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 327
Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 157/323 (48%), Positives = 225/323 (69%), Gaps = 2/323 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + VA ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L
Sbjct: 5 IETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNA 64
Query: 66 DS--ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ + LR + + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R +
Sbjct: 65 EATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCL 124
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P +FL + +++IF + P +RV I YVGF AP+++I+N + KRQ SI+RAW
Sbjct: 125 PFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPNIFIANAISKRQQSIRRAW 184
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLLLICVESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R++A EN
Sbjct: 185 PDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLG 244
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +D V++ TQALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPMI
Sbjct: 245 LRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMI 304
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+FFLPVL+ VI+GPA + + D
Sbjct: 305 LFFLPVLVAVILGPAGIQVADKF 327
>gi|220923700|ref|YP_002499002.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948307|gb|ACL58699.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 321
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 140/312 (44%), Positives = 201/312 (64%), Gaps = 2/312 (0%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L VA A+S F V P L L R++ VA E E +R ++ LQ S LR
Sbjct: 11 LLVAGIAAISAFCACMVVSWPYLVRDPLASRLRQVADETEAIRIRERAKLQAGHGPS-LR 69
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T K ++ +LNL D +V +LR AG+R + + L VRL++P + + +
Sbjct: 70 TEPKKLFKDIFDRLNLARQAEDGAVVQRLRMAGYRGQGPVVTFLAVRLIMPFVMFAVAMF 129
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++F +L PF L++G + + Y+G+ AP++++ N + KRQ++I+RAWPDALDLLLIC
Sbjct: 130 YVFVVLRLDG-PFVLKLGIALAVAYLGYYAPAIFVKNRISKRQTAIRRAWPDALDLLLIC 188
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+ ++ A R+VA++IG QS L+EE+ LT AELS+LP+R+ A+EN RT +D V+
Sbjct: 189 VESGMGVESAFRKVADEIGPQSPELAEELSLTTAELSYLPDRRKAYENLAERTGLDGVKG 248
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+LIQ+++YGT +G +LRVL E R R+ EAEKKAA+L PKLTVPMI+FFLPVL V
Sbjct: 249 VVTSLIQAEKYGTPVGQTLRVLAQENRDMRMTEAEKKAAALPPKLTVPMILFFLPVLFAV 308
Query: 314 IIGPAILSIIDT 325
II PA + I +T
Sbjct: 309 IITPAAIQIANT 320
>gi|307315796|ref|ZP_07595310.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|306898564|gb|EFN29237.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 327
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 157/323 (48%), Positives = 224/323 (69%), Gaps = 2/323 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + VA ++++ + Y++V P L G+L KRMKSVA ERE +R ++ L
Sbjct: 5 IETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNA 64
Query: 66 DS--ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ + LR + + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R +
Sbjct: 65 EATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCL 124
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P +FL + +++IF + P +RV I YVGF AP ++I+N + KRQ SI+RAW
Sbjct: 125 PFLFLTVAVLYIFVLGNFADKPIMVRVSFAIGFAYVGFYAPKIFIANAISKRQQSIRRAW 184
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLLLICVESG+S++ A+RRVA++I QS PL+EE++LT AELSFLP R++A EN
Sbjct: 185 PDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLG 244
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +D V++ TQALIQ+DRYGT + +LRVL E+R +R+ AEKKAA+L PKLTVPMI
Sbjct: 245 LRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMI 304
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+FFLPVL+ VI+GPA + + D
Sbjct: 305 LFFLPVLVAVILGPAGIQVADKF 327
>gi|254419878|ref|ZP_05033602.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186055|gb|EDX81031.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 121/326 (37%), Positives = 201/326 (61%), Gaps = 2/326 (0%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F + +++ V +F+ + ++ G +L++RMK+V+ R+ L+++ +
Sbjct: 2 DAFIRFITDPQNLLSLGVGVLVFATVLTLLSSMTGGVKLDQRMKAVSERRDELKRRSRAA 61
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ T D + V +LNL +L D + +++ AG+R L R
Sbjct: 62 IHTGPG-GLRHTDDEGFKKRVVDRLNLTKLLEDPKVADQMAQAGYRGPRPLTTFYFFRFA 120
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
P IFL++ ++F K++++P ++ A + GF AP+++++N + KR++SI +A
Sbjct: 121 SPFIFLMVVAFYMFVI-KVVDWPTMQKITACVAAAVAGFYAPNLFLTNRITKRRTSIMQA 179
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALDLLLICVE+G+SI+ A+ +V+++IG S+ L+EE+ L AELS+LP+R++A+EN
Sbjct: 180 FPDALDLLLICVEAGMSIEAAIAKVSQEIGTSSIELAEELSLLSAELSYLPDRRMAYENL 239
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT V++ A+ Q++ YGT + +LRV+ E R RL AEKKAA+L +LTVPM
Sbjct: 240 GKRTNHPGVKSVAVAMTQAETYGTPLSSALRVMAKENRDLRLSAAEKKAAALPAQLTVPM 299
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
I+FFLPVL +VI+GPAIL+I+DTM
Sbjct: 300 ILFFLPVLFIVILGPAILNIMDTMAK 325
>gi|307943150|ref|ZP_07658495.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773946|gb|EFO33162.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 326
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 132/325 (40%), Positives = 207/325 (63%), Gaps = 6/325 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ- 64
F D T++ AI + + +Y +++P L+ RMKSVA+ER+ +R ++ L
Sbjct: 3 FAGMDFTQVITAIMAMICVSGTLYVLIMPLFERDGLKSRMKSVALERDEIRMRERARLNN 62
Query: 65 --KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
KD S ++ ++ +++ ++ NL+++L D+ + +L AGFR + + R+
Sbjct: 63 AGKDGRGSLRGSQPTQRMKDLTERFNLQSVLTDKEVKMRLAQAGFRGPGPIYKYALGRVF 122
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
P + ++ + + + Y F + +G+ P++++ N ++KRQ +I RA
Sbjct: 123 APPVLFVVSLFYATAV---MGYGFLTGLLVGAAFAGLGYFVPNIYLQNTIEKRQKAIGRA 179
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
WPDALDL+LICVESG+SI+ A+++VA++IG QS L+EE+ LT AELS+L +R++AFEN
Sbjct: 180 WPDALDLMLICVESGMSIEVAMQKVADEIGVQSADLAEELTLTTAELSYLQDRRIAFENL 239
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
NRT MD ++N ALIQ++RYGT + +LR + +TR +R+ EAEKKAASL PKLTVPM
Sbjct: 240 GNRTGMDNIKNVVMALIQAERYGTPVAKALRAMSDDTRDQRMQEAEKKAASLPPKLTVPM 299
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
I+FFLPVL VI+ PAIL I+D M
Sbjct: 300 IVFFLPVLFAVIMTPAILQIMDVMG 324
>gi|295690793|ref|YP_003594486.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432696|gb|ADG11868.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 327
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 132/326 (40%), Positives = 196/326 (60%), Gaps = 2/326 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ + AV +F+ I + P + LE R+KSVA RE LR++ +L
Sbjct: 3 LVETLTDPSNLLTAFIAVVVFATIITLASPLMRDNGLEGRLKSVANRREELRRRSREALA 62
Query: 65 KD-SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ A LR +D + V++L L +L D +V+KL AGFR + R V
Sbjct: 63 QRHGAPGTLRHQDEGLYKKVVERLQLSRLLEDPKVVDKLAQAGFRGPRPVTTFYFFRFVA 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P +F + +++G + P Q ++ A + G+ AP+V+I+N+ QKR+ SI A+
Sbjct: 123 PFVFAAVVAAYLYGVNDFGLLPIQ-KLCACVAALAFGYYAPNVYITNIAQKRRESIVAAF 181
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD+LDLLLICVESG+S++ A+++V+ +IG QS+ L+EE+ L AELS+LP R+ A+EN
Sbjct: 182 PDSLDLLLICVESGMSVEAAIQKVSSEIGAQSMELAEELSLLTAELSYLPERRQAYENLA 241
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT V++ A+IQ++RYGT +G +LRV+ E R RL AEKKA +L KLTVPMI
Sbjct: 242 RRTNHPGVKSVATAMIQAERYGTPLGAALRVMAKENRELRLSSAEKKATALPAKLTVPMI 301
Query: 304 IFFLPVLILVIIGPAILSIIDTMKDH 329
+FFLPVL +VI+GPAI+ + D H
Sbjct: 302 LFFLPVLFIVILGPAIIKVQDVFAKH 327
>gi|86355869|ref|YP_467761.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279971|gb|ABC89034.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 328
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 170/328 (51%), Positives = 234/328 (71%), Gaps = 2/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIAVFVAIAVFATFYTIAIPFFERGDLNKRMKAVSTEREQIRARER 60
Query: 61 TSLQKDSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + LR ++++S+R V++ NL+ LVDEN VNKLRAAGFRSE +LN LV
Sbjct: 61 ARMNTEPGAGKTSLRNQNNRSVRQIVERFNLRKALVDENTVNKLRAAGFRSENALNTFLV 120
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
R ++P +FL L W+FG L + +R+ AVI I Y+GF AP+++ISN + KRQ S
Sbjct: 121 ARFLLPFLFLALAAFWVFGLGGLADRGMPMRMLAVIGIAYLGFYAPNIYISNRMSKRQHS 180
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IKRAWPDALDL+LICVESG+S++ A+RRV+E++G QS PL+EEM+LT AELSFLP+R+VA
Sbjct: 181 IKRAWPDALDLMLICVESGVSMEAAMRRVSEELGEQSPPLAEEMVLTTAELSFLPDRRVA 240
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+N RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R ER+ EAEKKAA+L PKL
Sbjct: 241 LDNLAARTQLELVRSVTQALIQADRYGTPVAQALRVLAQEGRDERMNEAEKKAAALPPKL 300
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
TVPMI+FFLPVLI VI+GPA + + D
Sbjct: 301 TVPMILFFLPVLIAVILGPAGIQVADRF 328
>gi|114568975|ref|YP_755655.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339437|gb|ABI64717.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 331
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 130/322 (40%), Positives = 191/322 (59%), Gaps = 4/322 (1%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
D +A+ A+ +F+ + + P+LGS +L+KR+KSV RE LR++ ++
Sbjct: 11 DFLTDPGSLIAMVAAILVFATVVTLTSPALGSDKLDKRIKSVNNRREELRRKNRAAIDAA 70
Query: 67 SASSR---LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ + + +R V+ L+L+ D + KL AG R + RL+
Sbjct: 71 AMAGKGTIRGAEAKGLVRKVVEALDLQKAFEDPALHEKLAQAGMRGQRPAMTFYFFRLLS 130
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P I + + ++F + P RV +G +G+ AP++++SNL KRQ SI A+
Sbjct: 131 PFILFGVALFYVFMIND-FGLPQITRVCFSFGLGLLGYYAPNLYLSNLAAKRQQSIMGAF 189
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD LDLLLICVESG+SI+ A +V+ ++G QS+ L+EE+ LT AELS+L +R+VA+EN
Sbjct: 190 PDGLDLLLICVESGMSIEAAFHKVSSEVGSQSIELAEELSLTTAELSYLQDRRVAYENLA 249
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT V+ +LIQ++RYGT +G +LRV+ E R RL AEKKAASL KLTVPMI
Sbjct: 250 KRTNHPGVKAVCTSLIQAERYGTPLGQALRVMAKENRDMRLAAAEKKAASLPAKLTVPMI 309
Query: 304 IFFLPVLILVIIGPAILSIIDT 325
IFFLPVL +VI+GPAI+
Sbjct: 310 IFFLPVLFVVILGPAIIRFQSM 331
>gi|227823976|ref|YP_002827949.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
gi|227342978|gb|ACP27196.1| components of type IV pilus TadC [Sinorhizobium fredii NGR234]
Length = 327
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 150/323 (46%), Positives = 225/323 (69%), Gaps = 2/323 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ +A+ ++++ + Y++ +P G+L KRMKSVA ERE +R ++ L
Sbjct: 5 IRTLTDPNIIIAVLVSMAVLATFYSLAVPFFERGDLTKRMKSVATEREQIRARERARLNA 64
Query: 66 DSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++++ + LR + + S+R V++LNL+ LVD+N VN+L+ AG+RS+ +LN L R +
Sbjct: 65 EASAGKASLRAQHNTSVRQIVERLNLRQALVDDNTVNRLKTAGYRSQNALNTFLFARFCL 124
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P +FL + +++IF + PF LR+ + Y+GF AP+++I+N + KRQ SI+RAW
Sbjct: 125 PFLFLTVAVVYIFVLGNFADKPFMLRICFALGFAYLGFYAPNIFIANAISKRQHSIRRAW 184
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLLLICVESG+S++ A+RRVA++I QS L+EE++LT AELSFLP+R++A EN
Sbjct: 185 PDALDLLLICVESGVSMELAMRRVADEIAAQSSALAEELVLTTAELSFLPDRRIALENLG 244
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R+ ++ V+ QALIQ+DRYGT I +LRVL E+R +R+ AEKKAA+L PKLTVPMI
Sbjct: 245 LRSGLEEVKAVMQALIQADRYGTPIAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMI 304
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+FFLPVL+ VI+GPA + + D
Sbjct: 305 LFFLPVLVAVILGPAGIQVADKF 327
>gi|329847258|ref|ZP_08262286.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842321|gb|EGF91890.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 343
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 131/320 (40%), Positives = 194/320 (60%), Gaps = 2/320 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F +AI AV +F + + +L+KR+K+VA RE LR+Q +
Sbjct: 4 FASTIMNPSNLIAIAVAVLVFFTVITLGKSMTSGEQLDKRLKAVAQRREELRRQSRQQIV 63
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
K+ + LR +D R FV K NL+ +L D + L AGFR ++ R ++P
Sbjct: 64 KEQS-GGLRHKDDGMARGFVDKFNLRKLLEDPKVAENLAMAGFRGPKPISTFYFFRFLMP 122
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L +IF + +++ + + G+ AP+++ISN KR+ SI A+P
Sbjct: 123 FVLGALATFYIFVVND-FGQKMNMKILICVAMFVAGYYAPNIYISNTASKRRQSIVAAFP 181
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLLLICVE+G+SI+ AL +V+++IGG S+PL+EEM L +AELS+LP R+ A+E F
Sbjct: 182 DALDLLLICVEAGMSIETALHKVSQEIGGTSIPLAEEMSLLVAELSYLPERRQAYEGFSK 241
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +++ A+IQ+++YGT +G +LRV+ E R RL AEKKAA+L +LTVPMI+
Sbjct: 242 RTSHPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTVPMIV 301
Query: 305 FFLPVLILVIIGPAILSIID 324
FFLPVL +VI+GPA L +ID
Sbjct: 302 FFLPVLFVVILGPAALKVID 321
>gi|300021859|ref|YP_003754470.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523680|gb|ADJ22149.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 326
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 128/322 (39%), Positives = 197/322 (61%), Gaps = 2/322 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILR-KQQITSL 63
F + + AV +F+ + ++ +P L ++ +RMK +AVER +R +
Sbjct: 4 FIETMMNPHFVATMLAAVCVFATVLSIALPMLQRDQMNRRMKEMAVERGKMRSARLAEMS 63
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
KD S++LR ++ V +L L+ ++ I L+ AG R + ++ L R+
Sbjct: 64 SKDRPSNKLRPTAKGFMQRIVDELKLRERFDNDEIRENLKRAGLRGQANIVTFLFFRVAA 123
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
PII L + ++F P + VG + G++GF P+V+ISN VQKRQ+SIK+A+
Sbjct: 124 PIIIFFLALFYVFVLYDTGHAPI-VNVGIALGAGFLGFYLPNVFISNRVQKRQTSIKQAF 182
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALD+LLICV+SG+S++ A +V ++I QS+ L+EEM LT AELS+L +R+ A+EN
Sbjct: 183 PDALDMLLICVQSGMSVEAAFAKVGKEIANQSIELAEEMALTTAELSYLQDRRQAYENLA 242
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + V+ AL+Q++RYGT +G +LR + E R R EAE+KA++L PKLTVPMI
Sbjct: 243 KRTGLPGVKGVATALVQAERYGTPVGQALRTMAKENREIRQSEAERKASALPPKLTVPMI 302
Query: 304 IFFLPVLILVIIGPAILSIIDT 325
+FFLPVL +VI+GPA + +
Sbjct: 303 VFFLPVLFIVILGPAGIGYMQM 324
>gi|148258240|ref|YP_001242825.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410413|gb|ABQ38919.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 132/325 (40%), Positives = 195/325 (60%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + A++ + +Y +++P L KRMK+VA ERE +++++
Sbjct: 1 MVDFLVTKLHDPHFMTMLFAAIAASATVYTLIMPLFAGENLNKRMKAVASERERIKQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ S LR + + V NL L E KL AG+R + L R
Sbjct: 61 ERMNAGEKVS-LRQTPKQLVAKVVDDFNLTKWLAQEAAREKLIMAGYRGQAPYITFLFAR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV P++ + ++++F L + +++G I + Y+G AP +++SN + KRQ SIK
Sbjct: 120 LVTPVVLFVGSVLYVFVIANL-QKSLPIKIGICIGMAYLGLQAPMLFLSNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +I QS+ LSEE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRKVSMEIASQSIALSEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKVAAM 323
>gi|146338118|ref|YP_001203166.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190924|emb|CAL74929.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 134/325 (41%), Positives = 194/325 (59%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + A++ + +Y +++P L KRMK+VA ERE +++++
Sbjct: 1 MVDFLVTKLHDPHFMTMFFAAIAASATVYTLIMPLFAGENLNKRMKAVASERERIKQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L S LR + + V NL L E +KL AG+R + L R
Sbjct: 61 ERLNAGEKVS-LRQTPKQLVAKVVDDFNLTKWLAQEAARDKLIMAGYRGQAPYITFLFGR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV P++ ++++F L E +++G + + Y+G AP +++SN + KRQ SI+
Sbjct: 120 LVTPVVLFAGSVLYVFVIAHL-EKSMPVKIGICVGMAYLGLQAPMLFLSNAISKRQLSIR 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A RRVA +I QS+ LSEE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRRVAIEISSQSIALSEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLARRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKVAAM 323
>gi|254473723|ref|ZP_05087118.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957109|gb|EEA92314.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 324
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 129/320 (40%), Positives = 205/320 (64%), Gaps = 3/320 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + T +++ ++A++ P +L+ RMKSVA+ER+ +R ++ L ++
Sbjct: 6 LGGNNIFMVVLTLIAVSGTVFALLSPLFERDDLKSRMKSVALERDKIRSRERNRLAQEKE 65
Query: 69 SSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ R LR+ +R FV K +LK +L +N+ KL+ AG+R L L +++++P+
Sbjct: 66 NQRVSLRSNPKDGVREFVDKYDLKKLLSSDNVAKKLKMAGYRGVSPLYTYLFLQIILPVA 125
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F ++ +L + PF V + + +GF PS+ + N V KRQ SI+ AWPDA
Sbjct: 126 FFAASFFYLVVILQL-DIPFAGVVACSLGVAAIGFYGPSIIVQNKVMKRQESIRLAWPDA 184
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DL+LICVESG+SI+ A ++VAE++G QS L+EE++L AELS+L R+ A++N RT
Sbjct: 185 MDLMLICVESGMSIEAAFKKVAEEVGPQSTALAEELILANAELSYLDERRKAYQNLAERT 244
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D V+N AL Q+++YGT IG +LRVL E+R ER+ EAE+KAA+L PKLTVPM++FF
Sbjct: 245 GLDGVKNVVVALSQAEKYGTPIGYALRVLSEESRQERMQEAERKAAALPPKLTVPMMLFF 304
Query: 307 LPVLILVIIGPAILSIIDTM 326
LPVL +V+I PA++ +
Sbjct: 305 LPVLFIVLIAPAVIKVSAHF 324
>gi|118589708|ref|ZP_01547113.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
gi|118437794|gb|EAV44430.1| hypothetical protein SIAM614_04690 [Stappia aggregata IAM 12614]
Length = 325
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 135/324 (41%), Positives = 212/324 (65%), Gaps = 3/324 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
D +++ A+ +++ ++++V+P L L+ RMKSVA+ER+ LR ++ LQ
Sbjct: 3 IDTLASSQFLAAVLAMIAVTGTVFSLVMPLLSRDTLKSRMKSVAIERDKLRAKERARLQA 62
Query: 66 DSASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
A ++ LR + +++ V +LNLK L D+ V+ LR AG+R L LV R+V+
Sbjct: 63 THADAKASLRNQPKAQMKSLVDRLNLKEALSDQTTVDNLRMAGYRGAAPLYYFLVARIVI 122
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P + + F + P ++ + + +G P++++ N + KR+ +I+RAW
Sbjct: 123 PAGIFTFSVAYAFLVLP-DDLPALSKICFCLGLAGLGAFMPNLYLKNKIDKRKLTIQRAW 181
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+LICVESG+SI++ RRVAE++G QSV L+EE+ LT AELS+L +R++A+EN
Sbjct: 182 PDALDLMLICVESGMSIEEGFRRVAEEVGVQSVELAEELSLTTAELSYLSDRRIAYENLA 241
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +D V+N ALIQ++RYGT +G +LR + +TR +R+ AE+KAASL PKLTVPMI
Sbjct: 242 KRTGVDGVKNVMMALIQAERYGTPVGTALRTMADDTREQRMQMAEQKAASLPPKLTVPMI 301
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+FFLPVL +I+GPA++ ++DT +
Sbjct: 302 MFFLPVLFFIIMGPAVIQVMDTFR 325
>gi|83859362|ref|ZP_00952883.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
HTCC2633]
gi|83852809|gb|EAP90662.1| hypothetical protein OA2633_13195 [Oceanicaulis alexandrii
HTCC2633]
Length = 326
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 129/324 (39%), Positives = 196/324 (60%), Gaps = 4/324 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F A+ A +F+ ++ + P++G L KRMK+VA RE LR++ L+
Sbjct: 4 FIRWIVTPANLFAVIAAGLVFATVWTLSAPAMGGDNLNKRMKAVANRREELRRKAREELE 63
Query: 65 KDSASSR---LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
K + + R V+KLNL +L D N+ KL AG+R + + R
Sbjct: 64 KSANEKKGGLRGKDTRSLYRKVVEKLNLATLLEDANLKTKLIQAGYRGQGPVYAFYFARF 123
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+P + +LG ++++ + P R+ V+++ +G+ AP +++SN KR+ SI +
Sbjct: 124 AIPPVMGLLGFVYLWVVND-FGLPVMQRLTIVMVLAVLGYYAPGIYLSNQAAKRRDSIMQ 182
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PD+LDL+LICVE+G+SI+ AL +VA +IG S+ L+EE+ LT AEL++L +R+ AFEN
Sbjct: 183 AFPDSLDLMLICVEAGMSIEAALHKVAAEIGTNSMELAEELSLTNAELAYLQDRRAAFEN 242
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT + V+ ALIQ++RYGT +G +LRV+ E R R+ AEKKAA+L KLTVP
Sbjct: 243 LGMRTNLPGVKAVATALIQAERYGTPLGQALRVMAKENRDMRMSNAEKKAAALPAKLTVP 302
Query: 302 MIIFFLPVLILVIIGPAILSIIDT 325
MI+FFLPVL +VIIGPA +S +
Sbjct: 303 MILFFLPVLFVVIIGPAAISFQNM 326
>gi|87199097|ref|YP_496354.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134778|gb|ABD25520.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 335
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 108/318 (33%), Positives = 175/318 (55%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+I A++ F+++ A+ + KR+K++ RE L+ +T+ + S
Sbjct: 14 DVYFVGSILVAIAAFAVMLAIYAAVTVRDPMAKRVKALNERREQLKSGIVTANARKRTSI 73
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R + + +R F++ L + I KL AG R + +++ RLV PI +
Sbjct: 74 VRRNQTTDQIRGFLESLKVLQDSQLAVIQQKLAQAGIRKKEWAVAVILGRLVGPIALGLF 133
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G + + ++ R + G+ P ++I NLV KR ++++ PDALDLL
Sbjct: 134 GAAVFYWSNTFPDWSPFKRFLGFAVCLIAGYKGPDLFIQNLVSKRTVAVRKGLPDALDLL 193
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+IC E+G+++D A RVA ++G L +E LT ELSFL R+ AFEN R +D
Sbjct: 194 VICAEAGLTVDAAFSRVARELGRAYPELGDEFALTAIELSFLTERRHAFENLAYRVDLDS 253
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+ +IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +T+P+I+F LPVL
Sbjct: 254 VKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTIPLILFILPVL 313
Query: 311 ILVIIGPAILSIIDTMKD 328
+VI+GPA SI D++ +
Sbjct: 314 FIVILGPAACSISDSLVN 331
>gi|85713510|ref|ZP_01044500.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699414|gb|EAQ37281.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 325
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 139/326 (42%), Positives = 199/326 (61%), Gaps = 2/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + + A++ + +Y ++ P + L KRMK+VA ERE +R+++
Sbjct: 1 MLDILIEKFHDPQFMTMVLAAIAASATVYTLITPFFAADGLTKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ LNL + E KL AG+R + L R
Sbjct: 61 ERLSKSEKVS-LRQAPKQFVSKIVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ LI I ++F + P +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVMLIGAIAYVFLLS-HTQQPTHVKIGICIGATFFGLQAPMLFLKNAITKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R++A+E
Sbjct: 179 RAFPDALDLLLICLESGMSIEVAFRKVSTEIGNQSVALAEEFTLTTAELSYLQDRKIAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N NRT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
PMI+FFLPVL +VI+GP + I M
Sbjct: 299 PMIVFFLPVLFVVILGPTGIKIAAQM 324
>gi|85707698|ref|ZP_01038764.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
gi|85689232|gb|EAQ29235.1| hypothetical protein NAP1_00645 [Erythrobacter sp. NAP1]
Length = 333
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 107/316 (33%), Positives = 183/316 (57%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L + ++ F++I A+ + KR+KS+ R+ L+ +TS K AS
Sbjct: 14 DVVLVGTLLAGLAAFAVIMAIYAAITIKDPMAKRVKSLNERRDELKAGIVTSGTKKRASL 73
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
++ + +++ + K+N+ + + KL AG+R++ I++ +R V+P++F I+
Sbjct: 74 VRKSDTTDKVKDSLGKMNVLEQSQLQAVQQKLAHAGYRNKELAVIVIGLRAVLPVVFGIV 133
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G I+ ++ + A+ ++G+ P +++ N KR I++ PDALDLL
Sbjct: 134 GFFAIYYFNVFDIKSDFYKFLAMAGCLFLGYKGPELFLKNKADKRTKEIQKGLPDALDLL 193
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+IC E+G+++D A RVA+++G L +E LT ELSFL R++AF N R ++
Sbjct: 194 VICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLNERKMAFNNLAYRVDLEA 253
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+ +IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL
Sbjct: 254 VKGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVL 313
Query: 311 ILVIIGPAILSIIDTM 326
+VI+GPA +I DT+
Sbjct: 314 FIVILGPAACAITDTL 329
>gi|304392379|ref|ZP_07374320.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295483|gb|EFL89842.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 328
Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 134/327 (40%), Positives = 198/327 (60%), Gaps = 5/327 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
FD+ + +A+T ++ F+ ++ +P L LE RMKSVA+ER+ LR ++ +Q
Sbjct: 1 MFDIITQPQNLIAMTVTLACFATALSIAMPLLAKDPLEGRMKSVALERDKLRARERAKIQ 60
Query: 65 KDSASSRLR-----TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
D + R + ++ V+KLNL+ L DEN L AG+R L I L +
Sbjct: 61 ADKQKAGQRVGAKKAEANSAITGLVEKLNLRTALADENTEAMLVHAGYRGSKPLFIFLAL 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R +P++FL L I++ + E ++ G +GF P + + ++ RQ SI
Sbjct: 121 RFALPLVFLALTAIYLLFLSERTEGDTMTIGIKCLVAGAIGFYLPILVVKQKMKARQLSI 180
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
++WPDALDL LICVESG+SI+ A R+VA +IG QS PL+EE+++T AELSFL R+ A+
Sbjct: 181 SQSWPDALDLSLICVESGMSIEVAFRKVASEIGAQSPPLAEELMITTAELSFLQERKHAY 240
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+N RT ++ V+N +L+QS++YGT + +LRVL E R R+ AEKKAA LGPKLT
Sbjct: 241 DNLVYRTGLESVKNVVLSLVQSEKYGTPLSVALRVLSQENRDTRMAMAEKKAAGLGPKLT 300
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
VPM+I FLPVL VI+GPA++ +
Sbjct: 301 VPMMICFLPVLFCVILGPAVIRTMAEF 327
>gi|167648147|ref|YP_001685810.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350577|gb|ABZ73312.1| type II secretion system protein [Caulobacter sp. K31]
Length = 328
Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 131/323 (40%), Positives = 196/323 (60%), Gaps = 1/323 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
++ A+ +F+ I + P L S LE R+KSVA RE LR++ ++
Sbjct: 1 MIKELTDPTNLLSAFIAIVVFATIVTLAAPMLSSNGLEGRLKSVANRREELRRRSREAMS 60
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ LR D +N V +L L +L D +V+KL AGFR ++ R V+P
Sbjct: 61 QKGGGGTLRHADEGMYKNVVDRLQLSRLLEDPKVVDKLAQAGFRGPKPVSTFYFFRFVMP 120
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
F ++ +++ + P Q ++ A VG+ AP+++ISN+ QKR+ SI A+P
Sbjct: 121 FAFALVAAFYLYVINGFGLLPVQ-KIAACFFALTVGYYAPNIYISNIAQKRRESIVAAFP 179
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDL+LICVESG+SI+ A+ +V ++GG S+ L+EE+ L AELS+LP R++A+E
Sbjct: 180 DALDLMLICVESGMSIEAAIAKVGAEVGGASIELAEELSLLTAELSYLPERRLAYEGLAR 239
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +R+ A+IQ++RYGT +G +LRV+ E R RL AEKKAA+L KLTVPMI+
Sbjct: 240 RTNHPGIRSVVTAMIQAERYGTPLGAALRVMAKENRDLRLSAAEKKAAALPAKLTVPMIL 299
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
FFLPVL +VI+GPA ++I+D +
Sbjct: 300 FFLPVLFIVIMGPAAINIMDAIA 322
>gi|315497460|ref|YP_004086264.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415472|gb|ADU12113.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 135/328 (41%), Positives = 204/328 (62%), Gaps = 3/328 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F L +A+ A+ F + ++ SL +L+KRMK+VA RE LR+Q
Sbjct: 1 MKELAFTLM-QPANLIALVVAILAFLAVLTLLRSSLSGEQLDKRMKAVAQRREELRRQSR 59
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
S+ + S S LR D + V +LNLK +L D +V+KL AGFR + R
Sbjct: 60 QSMVQASNSG-LRQTDESLYKRIVDRLNLKTLLEDPKVVDKLAMAGFRGPKPITTFYFFR 118
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++P + L +I+ + P +++ + + G+ AP+++ISN KR++SI
Sbjct: 119 FLMPFVMGALSTFYIYVVND-FGQPPNIKILICVAMFVAGYYAPNIYISNAASKRRASIV 177
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A+PDALDLLLICVE+G+SI+ AL++V+++IG S+ L+EE+ L +AELS+LP R++A+E
Sbjct: 178 TAFPDALDLLLICVEAGMSIEAALQKVSQEIGSASIELAEELSLLVAELSYLPERRMAYE 237
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
RT +++ A+IQ+++YGT +G +LRV+ E R RL AEKKAA+L +LTV
Sbjct: 238 GLARRTNYPGIKSVCTAMIQAEKYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTV 297
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKD 328
PMI+FFLPVL +VI+GPAIL+I+D M
Sbjct: 298 PMIVFFLPVLFVVILGPAILNIMDMMGK 325
>gi|315121886|ref|YP_004062375.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495288|gb|ADR51887.1| pilus component protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 319
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 242/320 (75%), Positives = 284/320 (88%), Gaps = 2/320 (0%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+FD+ +AV + T++S+FSLIYAV+IPSLGS ELEKR+KSV++ERE LRKQQ+ L K
Sbjct: 1 MFDSVTIAVVVATSISVFSLIYAVIIPSLGSDELEKRIKSVSIEREELRKQQLARLGK-- 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
SS LRT D+ SLR FV+K NLKAILVD+ +V+KLRAAGFRSEY+LNILL++RLV+PII
Sbjct: 59 PSSGLRTHDNMSLRKFVEKFNLKAILVDKPMVDKLRAAGFRSEYALNILLIIRLVLPIIT 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L++GIIWIFG+DKL +Y F R+ VILIGY GF APS++ISNLV KRQ SI+RAWPDAL
Sbjct: 119 LVIGIIWIFGFDKLEQYSFFNRLFVVILIGYAGFYAPSMFISNLVTKRQDSIRRAWPDAL 178
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLLLIC+ESGI++DQALRRVAE++GGQSV LSEE+LLT AELSFL NRQVAFENFYNRTQ
Sbjct: 179 DLLLICIESGIAVDQALRRVAEEVGGQSVALSEELLLTTAELSFLLNRQVAFENFYNRTQ 238
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
MDC+RN QA IQSDRYGTSIGDSLRVLV+ETRSERLMEAEKKAA+L PKLTVPMI+FFL
Sbjct: 239 MDCIRNVMQAFIQSDRYGTSIGDSLRVLVAETRSERLMEAEKKAAALSPKLTVPMILFFL 298
Query: 308 PVLILVIIGPAILSIIDTMK 327
PVL+LVIIGPAIL+I+DTMK
Sbjct: 299 PVLMLVIIGPAILNIMDTMK 318
>gi|92116008|ref|YP_575737.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798902|gb|ABE61277.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 325
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 137/326 (42%), Positives = 199/326 (61%), Gaps = 2/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + + + A++ + +Y ++ P + L KRMK+VA ERE +R+++
Sbjct: 1 MLDFLIEKLHDPQFMTMVLAAIAASATVYTLITPFFAAEGLTKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ LNL + E KL AG+R + L R
Sbjct: 61 ERLAKSEKVS-LRQAPKQFVSKVVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ LI I+++F ++ +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVMLIGAIVYVFLLS-HMQQSTPIKIGICIGAAFFGLQAPMLFLKNAITKRQISIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEVAFRKVSTEIGSQSVALAEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
PMI+FFLPVL +VI+GP + I M
Sbjct: 299 PMIVFFLPVLFVVILGPTGIKIAAQM 324
>gi|163757632|ref|ZP_02164721.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
gi|162285134|gb|EDQ35416.1| putative component of pilus protein [Hoeflea phototrophica DFL-43]
Length = 331
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 157/331 (47%), Positives = 227/331 (68%), Gaps = 5/331 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M V I +V++F+ ++ ++ P G+L+KRMKS A+ER+ +R ++
Sbjct: 1 MLSDIASSLTDPAYLVPILVSVAVFATLFTIMAPYFERGDLDKRMKSAALERDEIRARER 60
Query: 61 TSLQKDSAS-----SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
L + + + LR ++ S+R V++LNL+ L D+ V KLRAAG+R++ +LN+
Sbjct: 61 ARLHAEQSRGGSKSAGLRAHNNASVRGIVEQLNLRKALADDATVAKLRAAGYRTQNALNM 120
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L+ R V+P F + ++++F + + + P +R+ A I+ Y GF AP+++ISN +KR
Sbjct: 121 FLLARFVLPFFFFVAAVVYVFVLENMTDKPTTVRLLACIVAAYAGFYAPNIFISNQSKKR 180
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q SIK AWPDALDLLLICVESG+SI+ A++RVAE+I QS L+EE LLT AELS+L +R
Sbjct: 181 QQSIKMAWPDALDLLLICVESGVSIEAAMKRVAEEIAIQSTALAEEFLLTTAELSYLQDR 240
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+VAFEN NRT ++ V++ TQALIQS+RYGT I +LRVL E+R R+ EAEKKAA+L
Sbjct: 241 RVAFENLGNRTGLEAVKSVTQALIQSERYGTPIAQALRVLAQESRDARMTEAEKKAAALP 300
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
PKLTVPMI+FFLPVLI VI+GPA + ++D
Sbjct: 301 PKLTVPMILFFLPVLIGVILGPAAIQVMDRF 331
>gi|254293219|ref|YP_003059242.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041750|gb|ACT58545.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 333
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 124/318 (38%), Positives = 197/318 (61%), Gaps = 5/318 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ F A+ ++ F+ I + P+L +LE R+KSV+ RE LR++ L+
Sbjct: 1 MIESFTDPGFLAALLAGLASFATILTIAAPALKGNKLETRLKSVSNRREELRRKSREQLK 60
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
S LR +D +RN V KL+L+++L D+N+ L AG R ++ R +P
Sbjct: 61 DKS----LRRKDEGMMRNVVDKLDLQSLLRDDNLEKALVQAGLRGPRPVSAFYFARFALP 116
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +L +++ + + FQL++ AV+ GF AP+++++N KR++SI +A+P
Sbjct: 117 FLLGLLTFLYLHFVND-FDLNFQLQMCAVMFGAAAGFYAPNMYLTNRADKRKASIMKAFP 175
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D+LD++LICVESG+SI+ A +V E++G SV L+EE+ LT AELS+L R+ A+ N +
Sbjct: 176 DSLDMMLICVESGMSIESAFAKVGEEVGTASVELAEELGLTTAELSYLQERRQAYVNLAD 235
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +++ AL+Q+++YGT +G +LR + E R R++EAEKKAA+L KLTVPMI+
Sbjct: 236 RTNHPGIKSVATALVQAEKYGTPMGTALRTMAKENREIRVLEAEKKAAALPAKLTVPMIV 295
Query: 305 FFLPVLILVIIGPAILSI 322
FFLPVL +VI PA + I
Sbjct: 296 FFLPVLFIVIGTPAYIQI 313
>gi|75674494|ref|YP_316915.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419364|gb|ABA03563.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 325
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 137/326 (42%), Positives = 197/326 (60%), Gaps = 2/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + + A++ + +Y ++ P + L KRMK+VA ERE +R ++
Sbjct: 1 MLDILIEKFHNPQFMTMVLAAIAASATVYTLITPFFAADGLTKRMKAVASERERIRLRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L + S LR + + V+ LNL + E KL AG+R + L R
Sbjct: 61 ERLARTEKVS-LRQAPKQFISKIVEDLNLGKWVAQEAAREKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ LI I ++F + +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVMLIGAIAYVFLLS-HTQQSTTVKLGICIGATFFGMQAPMLFLHNAITKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ + G QSV L+EE+ LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICLESGMSIEVAFRKVSTETGNQSVALAEELTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N NRT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLANRTGVEGVKSVCLALQQSERYGTPLAQSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
PMI+FFLPVL +VI+GP + I M
Sbjct: 299 PMIVFFLPVLFVVILGPTGIKIAAQM 324
>gi|304320652|ref|YP_003854295.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
HTCC2503]
gi|303299554|gb|ADM09153.1| hypothetical protein PB2503_05397 [Parvularcula bermudensis
HTCC2503]
Length = 338
Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 125/324 (38%), Positives = 194/324 (59%), Gaps = 2/324 (0%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F + + +A+ AV +F I +V+P L+KR+K VA +E LR+Q
Sbjct: 2 QEFIEAAVDRQNQIAMLAAVGVFLTIVTLVMPLFADNGLDKRVKKVADYKERLRQQSRAE 61
Query: 63 LQKDSASSRLRTRDSKSL-RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
L LR + + + V++L L I +L AG R E + ++ R+
Sbjct: 62 LAGSRKPGSLRNATAGGMGKRLVEQLKLFEIFDAAAARKQLMMAGLRGERPVFTYMLARV 121
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ P+ L++ I +++ + + F +R+ I +G+ P++++ NLV KR+ I+
Sbjct: 122 ITPVAALLVAIFYLYVLEVVEVASF-MRLILCIGALALGYYLPNIYVHNLVTKRKQKIQL 180
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
++PD+LDLLLICVESG+SI+ AL++V E++ L+EE LT AELS+L +R+VA+ N
Sbjct: 181 SFPDSLDLLLICVESGMSIEAALQKVTEEVAASCPELAEEYGLTTAELSYLQDRKVAYHN 240
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT ++ V++ T ALIQS+ YGT++G SLRV+ +E R R+ AEKKAA+L PKLTVP
Sbjct: 241 LGERTGLEGVKSVTTALIQSEVYGTALGASLRVMAAENREIRMQNAEKKAAALPPKLTVP 300
Query: 302 MIIFFLPVLILVIIGPAILSIIDT 325
MI+FFLPVL +VI+GP +L T
Sbjct: 301 MILFFLPVLFVVILGPGVLKATST 324
>gi|39936745|ref|NP_949021.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|192292571|ref|YP_001993176.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|39650601|emb|CAE29124.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
gi|192286320|gb|ACF02701.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 141/325 (43%), Positives = 198/325 (60%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + F + A++ + +Y +VIP L KRMK+V ERE LR+++
Sbjct: 1 MLDFLIEKFHDARFMATLLAAIAASATVYTLVIPFFVGETLAKRMKAVGSERERLRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR K + V+ NL L E+ +KL AG+R + L R
Sbjct: 61 DRLAKAEKVS-LRQAPKKFVARVVEDFNLAKWLAQESARDKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F +++F + P +++G + + G AP +++ N +QKRQ SIK
Sbjct: 120 MVMPIAFGAASALYVFVIAN-FDQPLTIKIGMCVAAIFFGMQAPMLFLKNAIQKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A RRV+ +IG QS+PL+EE LT AELS+L +R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIETAFRRVSIEIGSQSIPLAEEFTLTTAELSYLQDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLALRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + I
Sbjct: 299 PMIVFFLPVLFVVILGPTGIRIAAM 323
>gi|115525754|ref|YP_782665.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519701|gb|ABJ07685.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 141/325 (43%), Positives = 203/325 (62%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + D F + + A++ + +Y ++ P + L KRMK+VA ERE +R+++
Sbjct: 1 MFNLLIDKFHDPRFMMMLFAAIAASATVYTLITPLFANEGLNKRMKTVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ NL + EN KL AG+R + L R
Sbjct: 61 DRLAKTERVS-LRQSPKRLVAKVVEDFNLGKWVAQENARQKLLMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V P+IFL+ +++F K+ P L++ I ++G AP ++++N + KRQ SIK
Sbjct: 120 MVTPLIFLVATALYVFLVAKM-NQPTALKIAICIAATFLGMQAPMLFLTNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+V+ +IG QS+PL+EE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICVESGMSIEVAFRKVSVEIGTQSIPLAEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + I
Sbjct: 299 PMILFFLPVLFVVILGPTGIRIAAM 323
>gi|110636326|ref|YP_676534.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287310|gb|ABG65369.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 329
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 151/321 (47%), Positives = 208/321 (64%), Gaps = 4/321 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+A+ ++++F+ I+ VV P G L+ RMK+VA+ERE LR +Q L
Sbjct: 4 VVTTLTDPSFLLALLVSIAVFATIFTVV-PVGGGDPLKARMKTVALEREELRAKQRARLA 62
Query: 65 KDSASSR---LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
++ R LR D S+R V +L+L+ L DE+ V LR AG+R + L L RL
Sbjct: 63 AEAERRRAGGLRREDRSSMRAIVDQLDLRRALADESTVAMLRTAGYRGQSPLTRFLFFRL 122
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V+P L+L + +IF L +R+ IL Y GF P ++ISN KR+ SI+
Sbjct: 123 VLPPAGLMLALFYIFVMGGLAAQSLPIRIFVCILAAYGGFYLPVLYISNQASKRKKSIQL 182
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
AWPDALDLLLICVESG+S++QA RRVA++IG QSV L+EE++LT AELSFL R+ A+EN
Sbjct: 183 AWPDALDLLLICVESGVSVEQAFRRVADEIGTQSVALAEELVLTTAELSFLQERRQAYEN 242
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT ++ V++ +QALIQ++RYGT I +LRVL E+R R+ AEKKAA+L PKLTVP
Sbjct: 243 LAARTGLESVKSVSQALIQAERYGTPISQALRVLADESREARMNAAEKKAAALPPKLTVP 302
Query: 302 MIIFFLPVLILVIIGPAILSI 322
MI+FFLPVL +I+GPA + +
Sbjct: 303 MILFFLPVLFAIILGPAAIQL 323
>gi|86748902|ref|YP_485398.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571930|gb|ABD06487.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats.
Identities = 136/325 (41%), Positives = 199/325 (61%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + A+++ + +Y +V+P L L KRMK+V ERE LR+++
Sbjct: 1 MIDLLIEKFHDARFMTMLLAAIAVSATVYTLVMPLLVGETLAKRMKAVGSERERLRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V LNL + E+ +KL AG+R + L R
Sbjct: 61 DRLAKAERVS-LRQAPKQFVAKIVDDLNLGKWVAQESARDKLVMAGYRGQAPYITFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F + +++F + + ++V I ++G AP +++ N + KRQ SI+
Sbjct: 120 MVMPIAFGLAAALYVFVLSNM-DQSTPIKVAICIGCVFLGMQAPMLFLKNAITKRQLSIR 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+VA +IG QS+PL+EE LT AELS+LP+R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRKVAVEIGTQSIPLAEEFTLTTAELSYLPDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL QS+RYGT + S+RV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGLDGVKSVCLALQQSERYGTPLSQSIRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIRVAAM 323
>gi|326388860|ref|ZP_08210442.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206460|gb|EGD57295.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 339
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 103/316 (32%), Positives = 174/316 (55%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ ++ +++ A+ + KR+KS+ RE L+ + + K S
Sbjct: 19 DVVFVGTVLAGLAAVAVVLAIYAAVTVRDPMAKRVKSLNERREELKAGIVVAASKKRTSI 78
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R + +R+ +++L + KL AG R + ++ R++ P++ L
Sbjct: 79 VRRNETTDRIRSILERLRVLQDSQLATAQQKLAQAGIRKKEWGVAVIFGRMIGPMVLGGL 138
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++I+G + +P + GA ++ G+ P V+++NL+ KR ++I++ PDALDLL
Sbjct: 139 AALFIYGLNYFPTWPDYKKFGAFAVMVLAGYKGPDVFVANLIGKRTNAIRKGLPDALDLL 198
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+IC E+G++ID A RVA ++G L +E LT ELSFL R+ AFEN R ++
Sbjct: 199 VICAEAGLTIDAAFSRVARELGRAYPELGDEFSLTAIELSFLTERRSAFENLAYRVNLES 258
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R +IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +T+P+I+F LP L
Sbjct: 259 MRGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTIPLILFILPTL 318
Query: 311 ILVIIGPAILSIIDTM 326
+VI+GPA S+ D
Sbjct: 319 FVVILGPAACSLSDNF 334
>gi|254504440|ref|ZP_05116591.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222440511|gb|EEE47190.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 324
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 132/322 (40%), Positives = 204/322 (63%), Gaps = 3/322 (0%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+ + + A +++ I+++V+P L L+ RMK+VA+ER+ LR ++ LQ
Sbjct: 4 ETIASAQFLAAFLAMIAVTGTIFSLVMPLLSRDTLKSRMKNVALERDKLRAKERARLQTS 63
Query: 67 SASSR--LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+R LR + ++NFV +LNLK +L D++ ++LR AG+R + L R+ +P
Sbjct: 64 QGDARMSLRNQPKAKMKNFVDRLNLKEMLADDSTQDRLRMAGYRGSAPIYYFLTARIAIP 123
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + F P +V I+ +G P++++ N + KR+ I+RAWP
Sbjct: 124 GGLFVFALAYAFLLAP-NTIPAFSKVLFCIVFSGLGAFFPNIYLKNQIDKRKLGIQRAWP 182
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDL+LICVESG+SI+ A ++VAE+IG QSV L+EE+ LT AELS+L R++A+EN
Sbjct: 183 DALDLMLICVESGMSIEAAFQKVAEEIGAQSVELAEELSLTTAELSYLSERRMAYENLAK 242
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +D V+N ALIQ++RYGT +G ++R + +TR+ER+ AE+KAASL PKLTVPMI+
Sbjct: 243 RTGVDGVKNVMMALIQAERYGTPVGTAIRNMADDTRAERMQFAEQKAASLPPKLTVPMIM 302
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
FFLPVL VI+ PA++ +
Sbjct: 303 FFLPVLFFVILTPAVIQAMGAF 324
>gi|103486613|ref|YP_616174.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976690|gb|ABF52841.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 347
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 109/310 (35%), Positives = 177/310 (57%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ A+ +F+++ A+ + KR+K++ RE L+ S K A + + +
Sbjct: 31 LLAAIGVFAVLVAIYNALTVRNPMTKRVKALNERREQLKAGITASTAKRRARLVRKNQTA 90
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+RNF+ +L + + + KL AG RS+ ++ R+V+PI+F L + I+
Sbjct: 91 DRMRNFLGRLQVLQEGQIKEVQQKLAQAGIRSKDLAVAVIFGRMVLPILFGGLALFLIYI 150
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
D R G + +G+ AP +++ N+ QKR +I++ PDALDLL+IC E+G
Sbjct: 151 VDMWPTLTPFKRSGFTMAALILGYKAPDLFVDNMRQKRTDAIRKGLPDALDLLVICAEAG 210
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+++D A RV++++G L EE LT EL FL R+ AFEN R ++ V+
Sbjct: 211 LTVDSAFSRVSKELGRAYPELGEEFALTSIELGFLTERRQAFENLAYRVNLESVKGVVTT 270
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+++YGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL +VI+GP
Sbjct: 271 MIQTEKYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVLFIVILGP 330
Query: 318 AILSIIDTMK 327
A S+ D M
Sbjct: 331 AACSLSDAMA 340
>gi|85373127|ref|YP_457189.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
gi|84786210|gb|ABC62392.1| hypothetical protein ELI_01500 [Erythrobacter litoralis HTCC2594]
Length = 331
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 104/317 (32%), Positives = 179/317 (56%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L +I ++ +++ A+ + KR+K++ R+ L+ + S K S
Sbjct: 14 DVILVGSILAGLAALAVMMAIYAAVTIKDPMAKRVKALNERRDELKAGIVKSSGKKRQSL 73
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+T ++ +++ ++ + + E I KL AG R++ +++ RLV+PI+ +
Sbjct: 74 VRKTDQTEKVKDTLQNMKVLQQSQIEVIQQKLAHAGIRNKELAVVVIGARLVLPIVLGGI 133
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ ++G D E+ R A+++ +G+ P + + N KR +I++ PDALDLL
Sbjct: 134 VALVVYGLDFFPEWGAMKRYAALVVAMGLGYKGPEMLLKNKAAKRTDAIRKGLPDALDLL 193
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+IC E+G+++D A RVA+++G L +E LT ELSFL R+ AF+N R ++
Sbjct: 194 VICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLTERKQAFDNLAYRVDLEA 253
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+ ++Q++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL
Sbjct: 254 VKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPVL 313
Query: 311 ILVIIGPAILSIIDTMK 327
+VI+GPA SI D
Sbjct: 314 FIVILGPAACSISDAFS 330
>gi|110632959|ref|YP_673167.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283943|gb|ABG62002.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 323
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 135/312 (43%), Positives = 190/312 (60%), Gaps = 1/312 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
A+ AV+ FS + V P L L +RM V ERE+LRKQ+ L
Sbjct: 9 EPGQLSALMAAVAAFSSVIVVSWPYLFRDNLARRMAKVENERELLRKQERARLAMQKRLP 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR+ K + V + L + +V++LR AG+R + L VRL+ PI +
Sbjct: 69 SLRSEPRKLFKQIVDRFKLAKQGDNGQLVDRLRRAGYRGNAPVITFLAVRLIAPIAIFAV 128
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ ++ K + P +G +G G+ P+++I N + KRQ +I+RAWP+ALDLL
Sbjct: 129 SLTYVLLILK-PDLPLFAILGIAAALGGFGYFVPALYIRNKITKRQKAIQRAWPEALDLL 187
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LICVESG+SI+ A R+VAE+IG QS ++EE+ LT AELSFL +R+ A+EN RT ++
Sbjct: 188 LICVESGMSIESAFRKVAEEIGTQSAEIAEEIALTTAELSFLQDRRQAYENLGRRTGVEG 247
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR A +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPVL
Sbjct: 248 VRAAVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMIVFFLPVL 307
Query: 311 ILVIIGPAILSI 322
VII PA + I
Sbjct: 308 FAVIITPAAIQI 319
>gi|114798130|ref|YP_761686.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738304|gb|ABI76429.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 135/329 (41%), Positives = 197/329 (59%), Gaps = 6/329 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + A A ++F + +P L +LE R+K+VA +RE LRKQ
Sbjct: 1 MYDFLVS-FTKPQTLAAYLVAAAVFGTFMTIFLPYLQGNKLETRLKAVASQREKLRKQSR 59
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+L+K LR +D + + KLNL L D N+V + AG R ++ R
Sbjct: 60 AALEKKG----LRRKDDSVVGSISSKLNLAQALEDPNVVKLMNQAGLRGPGPISAFYFAR 115
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ +P L +IF + ++ G+VI GF AP+++ISNL QKRQ S+
Sbjct: 116 MAMPFAGAGLMFFYIFFVNDH-GLSQFMKYGSVIFGAAAGFYAPNLYISNLAQKRQKSLM 174
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALD+LLICVE+G+SI+ +V+++IG S L+EE +T+AELS+LP+R++A+E
Sbjct: 175 RAFPDALDMLLICVEAGMSIEMGFNKVSQEIGSASPELAEEFGITVAELSYLPDRRLAYE 234
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT + V+ AL Q++RYGT +GD+LR++ E R R+ EAEKKAASL KLTV
Sbjct: 235 NLALRTGHEGVKAVCMALGQAERYGTPLGDALRMMAKENREMRMSEAEKKAASLPAKLTV 294
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMKDH 329
PMI+FFLPVL LV++GPA + K++
Sbjct: 295 PMILFFLPVLFLVVLGPAYIQYQAMQKEN 323
>gi|27376545|ref|NP_768074.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
gi|27349686|dbj|BAC46699.1| pilus assemble protein [Bradyrhizobium japonicum USDA 110]
Length = 324
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 137/325 (42%), Positives = 198/325 (60%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + A++ + +Y +V+P L KRMK+VA ERE +R+++
Sbjct: 1 MVEFLVSKLHDVRFMTMLLAAIAASATVYTLVMPLFAGEGLSKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ NL L E +KL AG+R + L R
Sbjct: 61 ERLNKSEKVS-LRQTPKQLVSKVVEDFNLTKWLAQEAARDKLIMAGYRGQAPYITFLFAR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI + ++++F +E P +++G I Y+G AP +++ N + KRQ SIK
Sbjct: 120 MVAPITLFVGSVLYVFLIA-HMEKPVPVKIGICIGAAYLGLQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+S++ A R+VA +I GQS+ LSEE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICIESGMSVEMAFRKVATEIVGQSIALSEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL Q++RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLARRTGLEGVKSVCLALQQAERYGTPLGHSLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + I +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKISEM 323
>gi|159043673|ref|YP_001532467.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
gi|157911433|gb|ABV92866.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
Length = 331
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 3/318 (0%)
Query: 14 LAVAITTAVS--IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L VA + + + ++ L L ++ K ++ + R +D +
Sbjct: 10 LLVAYLGPLGPVLAAGFLGAMLILLTLPFLLRKEKDPLLKIKQERLGTAKRAAEDGKGKQ 69
Query: 72 LRTRDS-KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR D K L F + L + I KL AG+R + S+ I +L + + FL +
Sbjct: 70 LRQDDPGKKLERFSQYLEPQDNEELSAIRLKLIQAGYRQKSSVQIFHFAQLALGLGFLSI 129
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+I+ F + + ++ G+ G+ P W+ + KRQ I +PD+LDL+
Sbjct: 130 GVIYTFFFGGGEDPDVTKATLTTLVPGFCGYYLPKYWVDKRIDKRQEEITNGFPDSLDLM 189
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
L+CVE+G +DQA+ RVA +I L++E + E+ ++ ++ R +
Sbjct: 190 LVCVEAGQGLDQAIIRVAHEIRAGYPDLADEFEMVAFEIKAGKDKITVLKDMAERCGVGD 249
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + LIQS +GTSI D+LRV E R +R+M AE+KA L KLT+ ++F +P L
Sbjct: 250 VTSFVTVLIQSQSFGTSIADALRVYAGEMRDKRVMRAEEKANVLPTKLTLGTMMFTVPPL 309
Query: 311 ILVIIGPAILSIIDTMKD 328
++++IGP++ SI +++
Sbjct: 310 LIILIGPSMWSIYESLSQ 327
>gi|255264846|ref|ZP_05344188.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255107181|gb|EET49855.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 323
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 81/302 (26%), Positives = 153/302 (50%), Gaps = 3/302 (0%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
L+ V+ L L +K + L++ +T Q+D S + + L +
Sbjct: 21 LLVVGVLGMFLILLTLPVLLKKQEDPLDKLKRNNVTPGQRD---SLRFNQGTDKLDKYAD 77
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
L + I KL AG+R + ++ + + I L+ G+ + E
Sbjct: 78 FLEPQDEEEYSAIRLKLLQAGYRGKSAVRTFHFAQFALGIALLLAGVAYAIYNSTAGEPS 137
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
Q + ++++ G VG+ AP W++ Q RQ +I +PD+LD++L+CVE+G S+DQ++
Sbjct: 138 TQSTIMSILIPGCVGYMAPKYWVTKRQQTRQEAITNGFPDSLDMMLVCVEAGQSLDQSIL 197
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RV++++ L+ E + E+ ++ + R + + + LIQS +G
Sbjct: 198 RVSQELKSGFPDLASEYEIVSHEMKAGKDKTSVLRDMSERCGVPDIASFVTVLIQSQSFG 257
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
TSI ++LRV E R +R+M AE+KA +L K+T+ ++ +P L++++IGP++ I +T
Sbjct: 258 TSIAEALRVYAGEMRDKRVMRAEEKANTLPTKMTLATMMLTVPPLLIILIGPSVYGIAET 317
Query: 326 MK 327
+K
Sbjct: 318 LK 319
>gi|296284556|ref|ZP_06862554.1| hypothetical protein CbatJ_13056 [Citromicrobium bathyomarinum
JL354]
Length = 342
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 106/322 (32%), Positives = 182/322 (56%), Gaps = 1/322 (0%)
Query: 7 DLFDATELAVA-ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
L +AVA + ++ +++ A+ + KR+K++ R+ L+ + +
Sbjct: 20 TLMGVDVIAVATVLAGIAAMAVMLAIYAAVTVRDPMAKRIKALNERRDELKAGIVRETAR 79
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
S RT+ + +++ + + E + KL AG R++ ++ R V+PI
Sbjct: 80 KRKSLVRRTQKTDKVKDTLANFKVLQQSQLEVVQQKLAHAGIRNKEYAVYVIGARAVLPI 139
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ ++ + D ++ R+GA+ + ++G+ P ++I+N +KR +I++ PD
Sbjct: 140 VLGLIAFYLFYVSDMFADWGSFKRLGALSIAVFIGYKGPELYIANKAKKRTDAIRKGLPD 199
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC E+G++ID A RVA+++G L +E LLT ELSFL NR++AF+N R
Sbjct: 200 ALDLLVICAEAGLTIDSAFTRVAKELGRAYPELGDEFLLTSIELSFLNNRKMAFDNLAYR 259
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ V+ +IQ++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F
Sbjct: 260 VDLEAVQGVVTTMIQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLILF 319
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
LP L +VI+GPA SI D
Sbjct: 320 ILPTLFIVILGPAGCSIADAFS 341
>gi|302381751|ref|YP_003817574.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192379|gb|ADK99950.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 333
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 123/317 (38%), Positives = 194/317 (61%), Gaps = 3/317 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
++I + +F+ + ++ G L+KRM++V+V R+ L+++ ++ +
Sbjct: 6 EPRTLISIVVGLLVFATMLTLLSSMGGGVSLDKRMQAVSVRRDELKRRSRQAIA--NGQG 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR D + V +LNL +L D + ++ AG R L R P IF+
Sbjct: 64 GLRHTDDGFKKRVVDRLNLVKLLEDPKVAEQMIQAGLRGPRPLTTFYFFRFATPFIFMFA 123
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++++F + +R+G V+ GF P++++ N + KRQ SI +A+PDALDLL
Sbjct: 124 AVLYVFVMND-FGLSVTVRLGIVMFATVAGFYGPNIFLKNRIAKRQLSIMQAFPDALDLL 182
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LICVE+G+SI+ A+ +V+++IG SV L+EE+ L AELS+LP R++A+E RT
Sbjct: 183 LICVEAGMSIEAAIVKVSQEIGTTSVELAEELALLSAELSYLPERRMAYEGLAKRTNHPG 242
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR+ + A+IQ+++YGT +G +LR + E R RL AEKKAA+L +LTVPMIIFFLPVL
Sbjct: 243 VRSVSTAMIQAEQYGTPLGSALRTMAKENRDLRLSAAEKKAAALPAQLTVPMIIFFLPVL 302
Query: 311 ILVIIGPAILSIIDTMK 327
+VI+GPAI++I DT+K
Sbjct: 303 FVVILGPAIINIQDTLK 319
>gi|209886535|ref|YP_002290392.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874731|gb|ACI94527.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 142/327 (43%), Positives = 204/327 (62%), Gaps = 2/327 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M D T+ A++ + YA++ P L +RMK+VA ERE +R+++
Sbjct: 1 MLDLLIDKLHDTQFLTMTFAAIAASATAYALISPMFAGDGLARRMKAVASERERMRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ ++ LR + ++ V++ NL L E KL AG+R L R
Sbjct: 61 ERMNRNEKV-TLRQSPKQVVQRVVERFNLGKWLAQEEAKEKLIMAGYRGHAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV P++FLI ++IF L E +++G IL ++G AP +++ N + KRQ SIK
Sbjct: 120 LVAPVVFLIATALYIFVILNL-EQTMTIKIGICILAAWLGMQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+V+ +IG QSVPL+EE+ LT AELS+L +R++A+E
Sbjct: 179 RAFPDALDLLLICVESGMSIEAAFRKVSVEIGSQSVPLAEELTLTTAELSYLQDRKMAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL+QS+RYGT +G +LRV+ E R R+ EAEKKAASL PKLTV
Sbjct: 239 NLQKRTGLEGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMNEAEKKAASLPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +VI+GP + + MK
Sbjct: 299 PMIVFFLPVLFVVILGPTWIKVAAYMK 325
>gi|154250694|ref|YP_001411518.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154644|gb|ABS61861.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 322
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 129/313 (41%), Positives = 195/313 (62%), Gaps = 3/313 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E V + TAV+ F+ I+ + P L + +L RMK V+ ERE +R + +L ++
Sbjct: 8 MFSIENVVTLLTAVAAFATIFTLTAPLLNTDKLSTRMKYVSTEREAMRARAREALAQEKT 67
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
RLR ++ V+K +L + + KLR AGFR + + R V+P +
Sbjct: 68 --RLRHTPKGFIKQVVEKFASGNMLENAAVKEKLRQAGFRGPGPMYTFVFFRFVMPPVLF 125
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ ++++ + P R+ +VGF P++++ N++ +RQ SI++A+PDALD
Sbjct: 126 VVTLLYMVFVNDFGLQP-MARLAVSCAAAFVGFYLPNLFVENVISRRQDSIRKAFPDALD 184
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+LICVESG+SI+ A ++VA +IG QSV L+EE+ LT AELS+L R++A+EN RT +
Sbjct: 185 LMLICVESGMSIEAAFQKVAAEIGAQSVELAEELGLTTAELSYLQERRMAYENLARRTGL 244
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V+ LIQ++RYGT +G +LRV+ E R R+ EAEKKAA L PKLTVPMI+FFLP
Sbjct: 245 PGVKAVATTLIQAERYGTPLGQALRVMAQENRDMRMAEAEKKAAGLPPKLTVPMILFFLP 304
Query: 309 VLILVIIGPAILS 321
VL VI+GPAI+
Sbjct: 305 VLFGVILGPAIIK 317
>gi|149186259|ref|ZP_01864573.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
gi|148830290|gb|EDL48727.1| hypothetical protein ED21_31019 [Erythrobacter sp. SD-21]
Length = 329
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 111/318 (34%), Positives = 185/318 (58%), Gaps = 1/318 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L +I ++ F++I+A+ + KR+K++ RE L+ +T+ K S
Sbjct: 13 DVILVGSILAGIAAFAVIFAIYTAVTIKDPMAKRVKALEGRREELKLGLVTAGAKKRQSL 72
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+T + +R + + + + + KL AGFR++ IL+ +R+V+PI+F +
Sbjct: 73 VRKTNTTDKVRETLGNMKVLQDSQVQMMQQKLAWAGFRNKEVAVILIGLRMVLPIVFGSI 132
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
I ++G + ++ F RV A+ + G+ P +++SN+ KR +I++ PDALDLL
Sbjct: 133 AAILLYGIEIYPDWQF-KRVAALAFAVFAGYKGPEIYLSNIASKRTDAIRKGLPDALDLL 191
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+IC E+G+++D A RVA+++G L +E LT ELSFL R+ AF+N R ++
Sbjct: 192 VICAEAGLTVDAAFNRVAKELGRAYPELGDEFALTAIELSFLNERKKAFDNLAYRVNLEA 251
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+ ++Q++RYGT + +LRVL +E R+ER+M AE+KAA L +TVP+I+F LPVL
Sbjct: 252 VKGVVTTMVQTERYGTPLASALRVLSAEFRNERMMRAEEKAARLPAIMTVPLIMFILPVL 311
Query: 311 ILVIIGPAILSIIDTMKD 328
+VI+GPA SI D
Sbjct: 312 FIVILGPAACSIADAFSK 329
>gi|16127170|ref|NP_421734.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
gi|221235971|ref|YP_002518408.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
gi|13424566|gb|AAK24902.1| hypothetical protein CC_2940 [Caulobacter crescentus CB15]
gi|220965144|gb|ACL96500.1| tyrosine phenol-lyase [Caulobacter crescentus NA1000]
Length = 362
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 130/326 (39%), Positives = 197/326 (60%), Gaps = 4/326 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK---QQIT 61
+ + + AV +F+ I + P + LE R+KSVA RE LR+ Q I+
Sbjct: 38 LVETLTSPSNVLTAFIAVVVFATIITLASPVMRDNNLEGRLKSVANRREELRRRSRQSIS 97
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ +A LR +D +N V++L L +L D +V KL AGFR ++ R
Sbjct: 98 TRAPGTAGGTLRHQDEGLYKNVVERLQLSRLLEDPKVVEKLAQAGFRGPKPVSTFYFFRF 157
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+P F +++ + P ++ A + +G+ AP+V+ISN+ QKR+ SI
Sbjct: 158 AMPFAFAAGAAFYLYVVNDFGLLP-MQKLCACVAFLALGYYAPNVYISNVAQKRRESIVA 216
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PDALDLLLICVESG+SI+ A+++V ++G S+ L+EE+ L AELS+LP+R++A+EN
Sbjct: 217 AFPDALDLLLICVESGMSIEAAIQKVGAEVGSSSMELAEELSLLTAELSYLPDRRLAYEN 276
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RT +++ A+IQ++RYGT +G +LRV+ E R RL AEKKAA+L +LTVP
Sbjct: 277 LARRTNHPGIKSVATAMIQAERYGTPLGTALRVMAKENRELRLSAAEKKAAALPAQLTVP 336
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
MI+FFLPVL ++I+GPAI+ + D K
Sbjct: 337 MILFFLPVLFIMILGPAIMKVQDAFK 362
>gi|84501671|ref|ZP_00999843.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390292|gb|EAQ02851.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 330
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 151/325 (46%), Gaps = 12/325 (3%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
+ + D+ + + L+ +P + E++ KQ
Sbjct: 4 LTNILTDMMGP---LGPLIVVGGLGVLMIVGALPFMLKKEVD---------PLEKLKQNG 51
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
T D+ + ++ L + L + + KL AG+RS+ S+ +
Sbjct: 52 TPATADNKDKLRNNKRNQRLERYSSFLEPQNEKEYSAMRIKLLQAGYRSKDSVRYFHFAQ 111
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ I L+ G+I+ + Q V ++ G VG+ P WI+ +RQ I
Sbjct: 112 FALGIFGLLGGVIYFIAVKAADQPDTQTTVMYILGPGGVGYLIPKYWINKRQAQRQEEIT 171
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+PDALD+LL+CVE+G S+DQA+ RVA++I L++E L E+ ++
Sbjct: 172 NGFPDALDMLLVCVEAGQSMDQAILRVAKEIRVSYPSLADEFELVSHEIKAGKDKASVLG 231
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ R + + + LIQS +GTS+ D+LRV SE R +R+M AE+KA L K+T+
Sbjct: 232 DMAERCGVPDIASFVTVLIQSASFGTSVADALRVYASEMRDKRVMRAEEKANKLPTKMTL 291
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
++ +P L++++IGP++L I
Sbjct: 292 ATMMLTVPPLLIILIGPSVLGITKM 316
>gi|91977990|ref|YP_570649.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684446|gb|ABE40748.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 134/325 (41%), Positives = 197/325 (60%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + A++ + +Y +VIP L KRMK+V ERE +R+++
Sbjct: 1 MIDFLVAKLHDARFMTMFLAAIAASATVYTLVIPLFVGETLAKRMKAVGSERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ K S LR + + V+ LNL + E +KL AG+R + L R
Sbjct: 61 DRIAKAERVS-LRQAPKQFVAKVVEDLNLGKWVAQETARDKLVMAGYRGQAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F I +++F + + +++G I ++G AP +++ N + KRQ SIK
Sbjct: 120 MVMPIAFGIASALYVFLLSNM-QQSTSIKIGMCIAGVFLGMQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A R+V+ +IG QS+PL+EE+ LT AELS+LP+R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRKVSIEIGTQSIPLAEELTLTTAELSYLPDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT + SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAIRTGLEGVKSVCLALQQSERYGTPLSQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMIVFFLPVLFVVILGPTGIRVSAM 323
>gi|254441173|ref|ZP_05054666.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
gi|198251251|gb|EDY75566.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
Length = 326
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 71/283 (25%), Positives = 143/283 (50%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
++ A + L+ ++ + L + L + I KL
Sbjct: 40 LQKKADPLDKLKASNYARDLSSRPEKLRASQGTDKLDKYSSFLEPQDEEEYSAIQLKLIQ 99
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+R++ ++ + ++ I+ L+ GI + + + +++ G G+ P
Sbjct: 100 AGYRTKSAVKTYHFTQFMLGIVLLVGGITYAIYNSATGDPTTNATIMSILGPGMAGYYLP 159
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ +RQ + +PD+LD++L+CVE+G S+DQ++ RVA ++ L+EE +
Sbjct: 160 KWWVGKRQAERQLEMINGFPDSLDMMLVCVEAGQSLDQSIIRVAHELKSGFPALAEEYQM 219
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
E+ ++ + RT + + + LIQS ++GTSI ++LRV +E R +R+
Sbjct: 220 VSHEMKAGKDKTQVLRDMAERTGVADISSFVTVLIQSQQFGTSIAEALRVFSAEMRDKRV 279
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
M AE+KA +L K+T+ ++ +P L++++IGP+I +I +T++
Sbjct: 280 MRAEEKANTLPTKMTLATMLLTVPPLLIILIGPSIYNIYETLQ 322
>gi|296444390|ref|ZP_06886355.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258037|gb|EFH05099.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 329
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 131/327 (40%), Positives = 201/327 (61%), Gaps = 4/327 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F L ++ AV++ + + ++ + G L KRMKSVA ERE +R ++
Sbjct: 1 MFDTFVQYASNGRLMFSLMIAVAVVATVISIGLTFSGGDRLAKRMKSVASERERIRARER 60
Query: 61 TSLQKD---SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ S LR + ++N V + +L L + +L +AG+R + L
Sbjct: 61 AAANAKAKESGPKGLRQQPKVYMKNIVDRFSLDTWLNTGDAKMRLASAGYRGPQAEIAFL 120
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
RLV PI F +L I+ F ++ +++G VI YVG +P ++++N + KRQ
Sbjct: 121 FFRLVTPIAF-VLFGIFYFTVVDDSDWSLLVKIGVVIFAAYVGVKSPELFLTNAITKRQQ 179
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S++ A+PDALDL+LICVESG+SI+ A R+V ++IG +SVPL+EE L AELS+LP+R+
Sbjct: 180 SMRIAFPDALDLMLICVESGLSIEHAFRKVGKEIGVRSVPLAEEFALATAELSYLPDRRQ 239
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
AF N RT +DCV+ LIQ+++YGT +G +LRV E+R R+ EAE++AA+L PK
Sbjct: 240 AFHNLAARTGLDCVKQICTVLIQAEKYGTPLGRALRVTAQESRDMRMAEAERQAAALPPK 299
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
LTVPMI+FFLPVL++V++ PAI+ ++
Sbjct: 300 LTVPMIVFFLPVLMVVVMAPAIIQVMS 326
>gi|316933034|ref|YP_004108016.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600748|gb|ADU43283.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 142/325 (43%), Positives = 201/325 (61%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + F T + A++ + Y +V P + L KRMK+V ERE +R+++
Sbjct: 1 MVDFLIEKFHDTRFMATLLAAIAAAATAYTLVTPFIVGDTLAKRMKAVGSERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR K + V+ NL L E+ +KL AG+R + L R
Sbjct: 61 DRLAKAEKVS-LRQAPKKFVARVVEDFNLAKWLAQESARDKLVMAGYRGQAPYITFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+P++F + ++IF L + P +++G I + G AP +++ N +QKRQ SIK
Sbjct: 120 LVMPVVFGLASALYIFVITDL-QQPLTVKIGICIAAIFFGMQAPMLFLKNAIQKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLIC+ESG+SI+ A RRV+ +IG QS+PL+EE LT AELS+L +R+ A+E
Sbjct: 179 RAFPDALDLLLICIESGMSIEAAFRRVSIEIGSQSIPLAEEFTLTTAELSYLQDRKQAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAQRTGLDGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMIVFFLPVLFVVILGPTGIRLAAM 323
>gi|90425202|ref|YP_533572.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107216|gb|ABD89253.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 137/325 (42%), Positives = 198/325 (60%), Gaps = 2/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + F + A++ + Y ++ P L KRMK+VA ERE +R+++
Sbjct: 1 MFEFIIAKFHDVRFMTMLLAAIAASATAYTLITPLFAGESLSKRMKAVASERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L K S LR + + V+ NL + E +KL AG+R L R
Sbjct: 61 DRLSKTERVS-LRQAPKQFVSKVVEDFNLGKWVAQEAARDKLVMAGYRGHAPYVTFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V+PI F++ ++IF ++ P +++ I ++G AP ++++N + KRQ SIK
Sbjct: 120 MVMPIAFMLATALYIFVIS-HMQQPLGIKIAICIAACFLGMQAPMLFLTNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+VA +IG QS+PL+EE LT AELS+L +R+VA+E
Sbjct: 179 RAFPDALDLLLICVESGMSIETAFRKVAIEIGSQSIPLAEEFTLTTAELSYLQDRKVAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ AL QS+RYGT +G SLRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLAKRTGLEGVKSVCLALQQSERYGTPLGQSLRVMAQENRDMRMNEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VI+GP + +
Sbjct: 299 PMILFFLPVLFVVILGPTGIKVATM 323
>gi|110679391|ref|YP_682398.1| TadC family type II/IV secretion system protein [Roseobacter
denitrificans OCh 114]
gi|109455507|gb|ABG31712.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter denitrificans OCh 114]
Length = 355
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/318 (22%), Positives = 145/318 (45%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
D F + ++ + + + + E L++Q T
Sbjct: 28 MMDFFHNINALIIEYLGPLGPVILLGTLGLIMIGVTVALMLAQPEDPIEKLKRQIQTPET 87
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ ++ L+ F L + + LR AG++S+ ++ + +
Sbjct: 88 NAPEQRLRQGERNEQLQRFASFLEPQDVAELSARQLMLRQAGYQSQDAVRFFHFAQFALG 147
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I L+L +++ + Q + I+ G VG+ P W+ V R+ I R +P
Sbjct: 148 IAGLVLAFVYLNLLGHGEGFTTQKMMIYTIIPGAVGYYLPVYWVRRRVDARKDEITRGFP 207
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D+LD++L+CVE+G S+DQ + RV++++ L++E + E+ ++ +F
Sbjct: 208 DSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKAGKDKTTVLNDFGE 267
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + V + L QS ++GTSI ++LRV E R +R+M AE+ A L K+T+ ++
Sbjct: 268 RCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAEEMRDKRVMRAEEAANKLPTKMTLATMM 327
Query: 305 FFLPVLILVIIGPAILSI 322
+P L+++++GP++ I
Sbjct: 328 LTVPPLLIILVGPSVHGI 345
>gi|260431089|ref|ZP_05785060.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414917|gb|EEX08176.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 327
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 77/306 (25%), Positives = 151/306 (49%), Gaps = 5/306 (1%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
V + + +V + + E +K + +K+ + ++
Sbjct: 21 LIVVGVLGMFMILVTIPILLNQPEDPLKKL-----QRANSSQKRDRKNKKEQLRQASRNE 75
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F L K + KLR AG+ S+ ++ + + II +++G++ + +
Sbjct: 76 QLEKFASFLEPKDEQEYSAMQLKLRQAGYVSKDAVRFFHFAQFSLGIIGIVIGVLLVTVF 135
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
E+ Q + V++ G +G+ P WI+ V++R+ +I +PD LDL+L+CVE+G
Sbjct: 136 SNGQEFSGQQVLIRVLVPGAIGYYLPKYWITRRVEERKEAITAGFPDTLDLMLVCVEAGQ 195
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQA+ RVA ++ +++E + E+ ++ +F R + V + +
Sbjct: 196 SLDQAIVRVASEMKSSYPDIAQEFEIVAYEMKAGKDKNQVLRDFGTRCGVQDVSSFVTVM 255
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L+++++GP+
Sbjct: 256 IQSATFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVGPS 315
Query: 319 ILSIID 324
I++
Sbjct: 316 AKGIME 321
>gi|149915637|ref|ZP_01904163.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
gi|149810529|gb|EDM70372.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. AzwK-3b]
Length = 328
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/328 (22%), Positives = 153/328 (46%), Gaps = 11/328 (3%)
Query: 4 YFFDLFDATELAVA-----ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ 58
FF + + ++ ++ +VIP L + +E+ ++
Sbjct: 2 QFFTQIQDMLIGALGPFGPVIAVGTLGIVLVLLVIPILIKDSKD------PLEKLKRDQR 55
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + R ++ L + L + + L AG+R+ ++
Sbjct: 56 ERAGAPGLDTTRLRTNRKNEKLDKYASFLEPQDAKALSQVRLTLLQAGYRTRDAVRYYHF 115
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+L + + FL LG+++ + E Q + ++ G +G+ P W++ Q+RQ
Sbjct: 116 AQLTLALGFLTLGVLYFLIFKSGGETSAQQTILYILGPGAIGYMLPKYWVTKRQQQRQED 175
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I +PD+LD++L CVE+G S+DQ++ RV+ +I L+EE + ++ ++
Sbjct: 176 ITNGFPDSLDMMLTCVEAGQSLDQSIVRVSNEIAASYPALAEEYQIVANQIKAGRDKPSV 235
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
R + + + L+QS +GTSI D+LRV E R +R+M AE+KA L K+
Sbjct: 236 LNEMAERCGVQDISSFVTVLVQSQTFGTSIADALRVYAGEMRDKRVMRAEEKANKLPTKM 295
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
T+ ++ +P L+++++GP+++ I++
Sbjct: 296 TLATMMLTVPPLLIILVGPSVIGILELF 323
>gi|307318085|ref|ZP_07597521.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896126|gb|EFN26876.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 321
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 131/315 (41%), Positives = 189/315 (60%), Gaps = 2/315 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E AI S FS + V P + L RM+ V ERE +R+++ L++ S S
Sbjct: 9 DPEQLAAIMAGFSAFSAVVVVSWPYVFRDTLSDRMRRVEGERERIRQRERARLEEKSRVS 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + L D IV KL AG+R ++ L RL+ P+
Sbjct: 69 -LRVEPKRLFQAIVDRFRLAKQAEDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVAIFAA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I E P L V +G +G+ +P++++ N + KRQ SI+R+WP+ALDLL
Sbjct: 128 CLLYILLVV-RPEAPLLLVVAMAGAMGALGYFSPAIFVRNRITKRQQSIRRSWPEALDLL 186
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VE+G+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 187 LITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 246
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPVL
Sbjct: 247 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMILFFLPVL 306
Query: 311 ILVIIGPAILSIIDT 325
VII PA++ I+ T
Sbjct: 307 FAVIITPAVIQIMST 321
>gi|227818621|ref|YP_002822592.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
gi|36958877|gb|AAQ87302.1| Tyrosine phenol-lyase [Sinorhizobium fredii NGR234]
gi|227337620|gb|ACP21839.1| TadC, component of type IV pilus [Sinorhizobium fredii NGR234]
Length = 323
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 127/312 (40%), Positives = 191/312 (61%), Gaps = 1/312 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ A+ T ++ FS + AV P + L +RM+ V ERE +R+++ T L + +
Sbjct: 9 DPDQLSAMLTGIAAFSAVVAVSWPYVFRNTLAERMRKVESERERIRQRERTRLNAEKSKV 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + NL + +I+ +L AG+R + L RL+ PI+
Sbjct: 69 ALRAEPRRFFQAIVDRFNLAKQAENSDILRQLSMAGYRGYAPVTTFLAFRLIAPIVLFAA 128
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I + P + +G +G+ AP+++I N + KRQ +I+RAWP+ALDLL
Sbjct: 129 CLLYILLVL-RPQAPLLAVIAMAGAMGSLGYFAPAIFIRNRITKRQQAIRRAWPEALDLL 187
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VESG+ I+ A R+V E+IG QS ++EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 188 LITVESGMGIESAFRKVGEEIGAQSPEVAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 247
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 248 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKKAAALPPKLTVPMIVFFLPVL 307
Query: 311 ILVIIGPAILSI 322
VI+ PA + I
Sbjct: 308 FAVIVTPAAIQI 319
>gi|150377235|ref|YP_001313830.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031782|gb|ABR63897.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 321
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 134/315 (42%), Positives = 194/315 (61%), Gaps = 2/315 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E AI S FS + + P + L +RM+ V ERE +R+++ L++ S +S
Sbjct: 9 DAEQLAAIMAGFSAFSAVVVISWPYVFRDTLSERMRKVEGERERIRRRERARLEQKSKTS 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + L D IV KL AG+R ++ L RL+ P++ +
Sbjct: 69 -LRVEPKRLFQAIVDRFRLAKQADDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVVIFMA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I E P L V I G +G+ AP++++SN + KRQ SI+R+WP+ALDLL
Sbjct: 128 CLLYIL-LAVRPEAPLLLVVAMAIATGALGYFAPAIFVSNRITKRQQSIRRSWPEALDLL 186
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VESG+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 187 LITVESGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 246
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEKKAA+L PKLTVPMI+FFLPVL
Sbjct: 247 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKKAAALPPKLTVPMILFFLPVL 306
Query: 311 ILVIIGPAILSIIDT 325
VII PA++ I++
Sbjct: 307 FAVIITPAVIQIMNM 321
>gi|90419769|ref|ZP_01227678.1| putative Flp pilus assembly protein TadC, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335810|gb|EAS49558.1| putative Flp pilus assembly protein TadC, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 332
Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats.
Identities = 142/325 (43%), Positives = 209/325 (64%), Gaps = 4/325 (1%)
Query: 5 FFDLFD-ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREI---LRKQQI 60
F L + +A ++ A+++F+ A+ +P L +L+ RMK+VA+ER+ + ++
Sbjct: 7 MFALLGVSPAVAASLVMAIAVFTTFVAIAMPMLAGNQLKSRMKAVALERDEVRARERARM 66
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ + S + V++LNL+ L D+ V+ LR AG+R + L + L R
Sbjct: 67 AAENERGRSGLRQQDSKGVASLVVERLNLRTALADDKTVSSLRNAGYRGQRPLTLFLFAR 126
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
V+P++ L + ++FG L +P +R+ + + YVGF AP ++ N KR+ SI
Sbjct: 127 AVLPLLMFALALFYVFGLGLLDTHPTMMRIAICLGVAYVGFVAPIFFVKNRATKRRLSIS 186
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDLLLICVESG SI+ A RRVAE+IG QS+PL+EE++L AELS+LP+R+VA++
Sbjct: 187 RAWPDALDLLLICVESGNSIEAAFRRVAEEIGIQSIPLAEELVLVCAELSYLPDRKVAYD 246
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D VR AL+Q++RYGT +G +LR L E R +R+ AEKKAA+L PKLTV
Sbjct: 247 NLATRTGLDGVRTVCTALVQAERYGTPLGTALRTLSQENRDQRMNLAEKKAAALPPKLTV 306
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL VIIGPAI+ ++
Sbjct: 307 PMIVFFLPVLFAVIIGPAIIKVMAV 331
>gi|329890992|ref|ZP_08269335.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846293|gb|EGF95857.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 330
Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats.
Identities = 132/326 (40%), Positives = 200/326 (61%), Gaps = 4/326 (1%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVA--VEREILRKQQIT 61
F + ++I V++F+ + ++ +G G L+KRMK+VA E R +Q
Sbjct: 4 FMRFITDPQNLLSIGVGVAVFASVLTLLSSFVGGGARLDKRMKAVAERREELRRRSRQAM 63
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ +S LR D V +LNL +L D + + + AGFR LN R
Sbjct: 64 RGGAGNEASSLRRTDDSFRSRVVARLNLMKLLEDPKVADNMIQAGFRGPGPLNTFYFFRF 123
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
P I + L ++F K + P +V V++ VGF AP++++ N++ KR++SI
Sbjct: 124 ATPFILMALTAFYLFVVVK-PDLPMMTQVAMVVMAAGVGFYAPNIYLKNMIDKRRASIMA 182
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PD+LDLLLICVESG+SI+ A+++V++++GGQS+ L+EE+ L AELS+LP+R++A+E
Sbjct: 183 AFPDSLDLLLICVESGMSIEAAIQKVSQEVGGQSIELAEELSLLSAELSYLPDRRMAYEG 242
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
RTQ ++ A+ Q++ YGT +G +LRV+ E R RL AEKKAA+L KLTVP
Sbjct: 243 MAKRTQHPGIKAVATAMTQAETYGTPLGSALRVMAKENRELRLSAAEKKAAALPAKLTVP 302
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
MI+FFLPVL +VI+GPAI++I D MK
Sbjct: 303 MILFFLPVLFVVILGPAIINIQDMMK 328
>gi|170740616|ref|YP_001769271.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194890|gb|ACA16837.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 321
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 130/292 (44%), Positives = 189/292 (64%), Gaps = 4/292 (1%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P L L +RMKSV ER+ +R ++ L + LR + ++ V++ L L
Sbjct: 33 PFLEPNRLAQRMKSVGEERDRIRLRERDRLNQRGN---LRQQPKAYMKRVVERFKLDNWL 89
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E+ N+L AG+R + L RLV+P+ FL+L + ++F ++L PF +R+ V
Sbjct: 90 ATEDAKNRLMMAGYRGPQAETAFLFFRLVMPLGFLVLAVFYLFVL-QVLNQPFSIRLLIV 148
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I Y G AP +++ N KRQ+ I++ WPDALDLLLICVESG++I+ A RRV ++
Sbjct: 149 IAATYGGVKAPEIFLKNQTDKRQAQIRKNWPDALDLLLICVESGMAIELAFRRVGVEMAN 208
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
QS+ L+EE+ LT AELS+L +R+VA++N RT +D V+ ALIQ++RYGT IG +LR
Sbjct: 209 QSIVLAEELALTTAELSYLTDRRVAYDNLAIRTGLDSVKAVCTALIQAERYGTPIGQALR 268
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
VL E+R +R+ EAEKKAA+L PKLTVPMI+FFLPVL +VI+ PA++ +
Sbjct: 269 VLAQESRDQRMNEAEKKAAALPPKLTVPMILFFLPVLFVVILTPAMVQVFAA 320
>gi|126725975|ref|ZP_01741817.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2150]
gi|126705179|gb|EBA04270.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2150]
Length = 318
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 84/325 (25%), Positives = 154/325 (47%), Gaps = 13/325 (4%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
+ +A+ + F + + + K L+ +
Sbjct: 6 DFLIAQLGELGPLIAVGSLGLGFMAVAGFMYMQGMNDPFNK-----------LKATDEKA 54
Query: 63 LQKDSASSRLRTRDS-KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
K+S +S + R+ L + + L K + KL AG+ S+ ++ ++
Sbjct: 55 KAKESRTSLRQKRNKADQLDKYSEFLQPKDEGQLSEMRLKLLQAGYSSKSAVQTFHFLQF 114
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ II LI G I+ F Q+ + G G+ P W++ RQ +I +
Sbjct: 115 ALGIIGLIFGCIYAFTMLPDETTSKQMLMYIG-GPGGAGYMLPKYWVTRRRGTRQKNIIQ 173
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
A+PD+LDL+LICVESG S+DQA+ +V+++I L++E L E+ +++ ++
Sbjct: 174 AFPDSLDLMLICVESGQSLDQAIIKVSKEIRAGYPDLADEFELVAYEIKAGKDKKRVLKD 233
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F R + + + LIQ+ YGT I ++LR +E R +R+M AE+KA +L K+T+
Sbjct: 234 FSERCGVPDISSFVSVLIQAATYGTPIAEALRAYSAEMRDKRVMRAEEKANTLPVKMTLG 293
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
++F LP L+++++GPA+ I +
Sbjct: 294 TMVFCLPSLLIILVGPAVYKISQVL 318
>gi|299132291|ref|ZP_07025486.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592428|gb|EFI52628.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 325
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 137/326 (42%), Positives = 194/326 (59%), Gaps = 2/326 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M D + A++ + YA++ P S L +RMK+VA ERE +R+++
Sbjct: 1 MLDMLIDKVQDVRFLTMVFAAIAASATAYALISPLFASDGLTRRMKAVANERERIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ +S LR + + V NL L E KL AG+R L R
Sbjct: 61 ERMN-NSERVTLRQSPKQFIGKIVHDFNLGKWLAQEEAKEKLVMAGYRGHAPYITFLFFR 119
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V PI+ L + ++IF KL +++G I + G AP +++ N + KRQ SIK
Sbjct: 120 MVTPIVLLAVTALYIFVILKL-NQTTLVKIGICIGAAWFGMQAPMLFLKNAISKRQLSIK 178
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALDLLLICVESG+SI+ A R+V+ +IG QSV L+EE LT AELS+L +R+ A+E
Sbjct: 179 RAFPDALDLLLICVESGMSIEAAFRKVSFEIGSQSVALAEEFTLTTAELSYLQDRKTAYE 238
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT +D V++ AL+QS+RYGT +G +LRV+ E R R+ EAEKKAA+L PKLTV
Sbjct: 239 NLQKRTGIDGVKSVCMALMQSERYGTPLGQTLRVMAQENRDMRMTEAEKKAAALPPKLTV 298
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
PMI+FFLP+L +VI+GP + + M
Sbjct: 299 PMIVFFLPILFVVILGPTGIKVAAYM 324
>gi|323137430|ref|ZP_08072508.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397417|gb|EFX99940.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 323
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 130/321 (40%), Positives = 202/321 (62%), Gaps = 3/321 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ V+I TA+++ + I + +P L + L +RMKSV+ ERE +R+++ +
Sbjct: 4 IIEKLADGRFIVSILTAIAVIATILTIAMPLLNTDTLSRRMKSVSSERERIRQRERALAK 63
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ LR ++N V + +L L ++ KL +AGFR + L RLV P
Sbjct: 64 TQGKA--LRQEPKFYMKNVVDRFSLSKWLNTDDAKLKLASAGFRGPQAEVAFLFFRLVTP 121
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I FL + +++ D + L+ VI Y+G AP ++ISN + RQ+S++RA+P
Sbjct: 122 IAFLFFALFYLYFLDD-SDMSSLLKTMIVIGATYLGVKAPELFISNTITNRQTSMRRAFP 180
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDL+LICVESG+SI+ A R+V +IG QS+PL+EE L AELS+LP+R+ A+ N
Sbjct: 181 DALDLMLICVESGMSIEHAFRKVGSEIGVQSIPLAEEFALATAELSYLPDRRTAYLNLAA 240
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT ++ V+ + LIQ+++YGT +G +LR+ E+R R+MEAEKKAA+L PKLTVPMI+
Sbjct: 241 RTGLESVKQISTVLIQAEKYGTPLGQALRITAQESRDMRMMEAEKKAAALPPKLTVPMIV 300
Query: 305 FFLPVLILVIIGPAILSIIDT 325
FFLPVL++V++ PA + ++ +
Sbjct: 301 FFLPVLMVVVLSPAAIQVMQS 321
>gi|126729093|ref|ZP_01744907.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710083|gb|EBA09135.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 324
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 156/324 (48%), Gaps = 2/324 (0%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ D A+ + ++ A + L + + + + L++ + +
Sbjct: 1 MLDQLNTAITDLLGPAGPLILVAGLAILLILATIPIMLNTKPDPLDKLKETSQKKMDAQA 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ R ++ L + + L + I KL AG+R++ ++ + ++ + +
Sbjct: 61 RAVLRDKRRNEKLNKYAQFLEPQDAKELSEIKLKLLQAGYRTKDAVQVYYFMQFALGLGM 120
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L G + + E ++ ++ G VG+ AP WI+ ++KR+ I++ +PDAL
Sbjct: 121 LAAGTGYYLFFVNPEEADMTTKLMYILGPGCVGYLAPKYWITKRMEKRKEEIQQGFPDAL 180
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L+CVE+G S++Q++ RVA+++ L++E + E+ +R + R
Sbjct: 181 DMMLVCVEAGQSMEQSIIRVAKELRASYPALADEFEIISHEMKAGKDRSQVLNDMSERCG 240
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
V + L Q+ +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +
Sbjct: 241 SQDVSSFVTVLNQAQTFGTSISDALRVYAGEMRDKRVMRAEEAANKLPTKMTLTTMMLTV 300
Query: 308 PVLILVIIGPAILSI--IDTMKDH 329
P L+++++GP+ + I + M +
Sbjct: 301 PPLLIILVGPSAVGITQMGAMAGN 324
>gi|84687272|ref|ZP_01015152.1| type II/IV secretion system protein, TadC subfamily protein
[Maritimibacter alkaliphilus HTCC2654]
gi|84664705|gb|EAQ11189.1| type II/IV secretion system protein, TadC subfamily protein
[Rhodobacterales bacterium HTCC2654]
Length = 324
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 85/332 (25%), Positives = 158/332 (47%), Gaps = 19/332 (5%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGS----GELEKRMKSVAVEREILR 56
+ D F +A + + ++ A+ + +L+K K + E LR
Sbjct: 5 LTAILTDKFGPFGPLMA-LGGLGVLLIVGALPLLFKREEDPLNKLKKSQKELEEEHMALR 63
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ + + L + L + I +L AG+ + ++
Sbjct: 64 RTESGGMG-------------DKLEKYKSFLEPEDSEEYSAIQLRLLQAGYPGKNAVRTY 110
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + + L G+I+ F + E Q + V++ G VG+ AP W++ V R+
Sbjct: 111 HFAQFALGLGLLFAGLIYSFITND-GETSTQKMIMTVLIPGAVGYVAPKYWVTRRVDSRK 169
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I +PDALD++L+CVE+G S+DQA+ RVA++I L++E + E+ +R
Sbjct: 170 EEITNGFPDALDMMLVCVEAGQSLDQAIIRVAKEIRAGYPALADEFEIVSWEIKAGKDRI 229
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ R + V++ LIQS +GTSI ++LRV E R +R+M AE+KA +L
Sbjct: 230 QVLRDMGERCGVADVQSFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKANTLPT 289
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+T+ ++ +P L++++IGP++ + T+K+
Sbjct: 290 KMTLATMMLTVPPLLIILIGPSVYEVYKTLKN 321
>gi|188581665|ref|YP_001925110.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345163|gb|ACB80575.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 139/327 (42%), Positives = 204/327 (62%), Gaps = 4/327 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F + A A+ T ++ + ++ +V P L +L KRMK V+ ERE +R+++
Sbjct: 1 MLDEFVAIALAPRTVAAVLTGIAAAATVFTLVQPLLEGDQLAKRMKLVSDEREQIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L + + LR ++ V++ NL L E KL AG+R + L R
Sbjct: 61 ERLN---SRASLRVEPKAYMKRVVEQFNLSRWLGTETAKAKLVRAGYRGGGAETAFLFFR 117
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+PI + + ++F ++L+ P +R G V+ G+ GF P V++SN+ KRQ+ I+
Sbjct: 118 LVMPIAVTAVALFYLFLL-EVLDQPLMVRAGLVLAAGFFGFKLPEVYLSNMTTKRQAEIR 176
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDL LICVESG+S++ A RRV+ +I QS L+EE+ L AELSFLP R+VA+E
Sbjct: 177 RAWPDALDLCLICVESGMSVENAFRRVSLEIASQSTVLAEELALLTAELSFLPERRVAYE 236
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ T AL+Q++RYGT +G +LRVL E+R R+ EAEKKAA+L PKLTV
Sbjct: 237 NLALRTGLESVKSLTTALMQAERYGTPVGQALRVLAQESRDFRMTEAEKKAAALPPKLTV 296
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +V++ PA + M+
Sbjct: 297 PMILFFLPVLFVVLLTPAGIQAYALMQ 323
>gi|193782687|ref|NP_436096.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304378|ref|ZP_07584129.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|193073143|gb|AAK65508.2| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902580|gb|EFN33174.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 321
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 131/315 (41%), Positives = 189/315 (60%), Gaps = 2/315 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E AI S FS + V P + L RM+ V ERE +R+++ L++ S S
Sbjct: 9 DPEQLAAIMAGFSAFSAVVVVSWPYVFRDTLSDRMRRVEGERERIRQRERARLEEKSRVS 68
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
LR + + V + L D IV KL AG+R ++ L RL+ P+
Sbjct: 69 -LRVEPKRLFQAIVDRFRLAKQAEDGEIVRKLSMAGYRGHAAVTAFLAFRLIAPVAIFAA 127
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++I E P L V +G +G+ +P++++ N + KRQ SI+R+WP+ALDLL
Sbjct: 128 CLLYILLVV-RPEAPLLLVVAMAAAMGALGYFSPAIFVRNRITKRQQSIRRSWPEALDLL 186
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
LI VE+G+ I+ A R+V E+IG QS +EE+LLT AELS+L +R+ AFEN RT ++
Sbjct: 187 LITVEAGMGIESAFRKVGEEIGTQSPETAEEILLTTAELSYLQDRRQAFENLGQRTGVEG 246
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR +LIQ+++YGT +G +LRV+ E R R+ EAEK+AA+L PKLTVPMI+FFLPVL
Sbjct: 247 VRAVVTSLIQAEKYGTPLGQALRVMAQENRDMRMSEAEKRAAALPPKLTVPMILFFLPVL 306
Query: 311 ILVIIGPAILSIIDT 325
VII PA++ I+ T
Sbjct: 307 FAVIITPAVIQIMST 321
>gi|149200852|ref|ZP_01877827.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
gi|149145185|gb|EDM33211.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. TM1035]
Length = 326
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 80/311 (25%), Positives = 154/311 (49%), Gaps = 1/311 (0%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ + ++ V+ L + L R K +E+ + Q +S + +S
Sbjct: 14 ALGPFGPLIAVGGLGVMLILLTIPLMLRQKQDPLEKLKQ-ENQRSSTSVGTKTSLRAGVQ 72
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+K L + L + I KL AG+R ++ + + + LILG+I+
Sbjct: 73 NKKLDRYATFLEPQDAKQLSQIRLKLMQAGYRHRDAVRYFHFAQFALGVGLLILGVIYYV 132
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
E Q + ++ +G+ P W++ QKRQ I+ +PD+LD++L+C+E+
Sbjct: 133 LVKSGTETSTQETLMYILGPAGIGYMMPKYWVTKRQQKRQEEIQDGFPDSLDMMLVCIEA 192
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+DQ++ RVA ++ L++E + ++ ++ R + + +
Sbjct: 193 GQSMDQSIIRVASEMRASYPALADEFEIVALQIKAGRDKPSVLGEMAERCGVQDISSFVT 252
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L+QS +GTSIG++LRV E R +R+M AE+KA L K+T+ ++ +P L+++++G
Sbjct: 253 VLVQSQTFGTSIGEALRVYAGEMRDKRVMRAEEKANKLPTKMTLATMMLTVPPLLIILVG 312
Query: 317 PAILSIIDTMK 327
P++L I+D +
Sbjct: 313 PSVLGIMDLLA 323
>gi|163851908|ref|YP_001639951.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|218530659|ref|YP_002421475.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|240139031|ref|YP_002963506.1| hypothetical protein MexAM1_META1p2450 [Methylobacterium extorquens
AM1]
gi|254561626|ref|YP_003068721.1| hypothetical protein METDI3213 [Methylobacterium extorquens DM4]
gi|163663513|gb|ABY30880.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|218522962|gb|ACK83547.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|240009003|gb|ACS40229.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens AM1]
gi|254268904|emb|CAX24865.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens DM4]
Length = 323
Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats.
Identities = 139/327 (42%), Positives = 202/327 (61%), Gaps = 4/327 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M F + A A+ V+ + + +V P + L KRMK V+ ERE +R+++
Sbjct: 1 MLDDFVNTAFAPRTIAAVLAGVAAAATAFTLVQPLIEGDPLAKRMKLVSDEREQIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L + LR ++ V++ NL L E KL AG+R + L R
Sbjct: 61 ERLNSRT---TLRAEPKAYMKRVVEQFNLGRWLGTETAKAKLIRAGYRGAGAETAFLFFR 117
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+PI + + ++F ++L+ PF +R+G V G+ G P V++SN+ KRQ+ I+
Sbjct: 118 LVMPITLTAVALFYLFVL-EVLDQPFVIRLGLVFAAGFFGLKLPEVYLSNITSKRQAEIR 176
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RAWPDALDL LICVESG+S++ A RRV+ ++ QS L+EE+ L AELSFLP R+VA+E
Sbjct: 177 RAWPDALDLCLICVESGMSVENAFRRVSLEVASQSAVLAEELALLTAELSFLPERRVAYE 236
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ T AL+Q++RYGT +G +LRVL E+R R+ EAEKKAASL PKLTV
Sbjct: 237 NLALRTGLEIVKSLTTALMQAERYGTPVGQALRVLAQESRDYRMTEAEKKAASLPPKLTV 296
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
PMI+FFLPVL +V++ PA + + + MK
Sbjct: 297 PMILFFLPVLFVVLLTPAGIQVYEAMK 323
>gi|126733578|ref|ZP_01749325.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
gi|126716444|gb|EBA13308.1| Putative Flp pilus assembly protein TadC [Roseobacter sp. CCS2]
Length = 321
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 80/321 (24%), Positives = 154/321 (47%), Gaps = 2/321 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + +I ++ L L +K + ++ + S
Sbjct: 1 MENIQTMITDVLGPFGPLMIVGLLGVFLILITLPVLLKKEVDPLDKIKAANSGTKGDKSK 60
Query: 69 SSRLR-TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+LR L + L + + KL AG+RS ++ I ++ + I
Sbjct: 61 DKKLRSAAGKDKLEKYSNFLEPQNAEEYSAVKLKLLQAGYRSTNAVRIYNFMQFALGIFG 120
Query: 128 LILGIIWIFG-YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L+ G + +E Q V +++ G G+ P W++ Q RQ +I+ A+PD+
Sbjct: 121 LLCGGAYSLIQMSGTVEVTTQQLVMWIMIPGGAGYLLPKYWVTRRQQMRQEAIENAFPDS 180
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD++L+CVE+G S+DQ++ RVA ++ L+EE + E ++ ++ +R
Sbjct: 181 LDMMLVCVEAGQSLDQSIIRVARELKSGFPELAEEFEIVSQEAKAGKDKNTVLKDMSDRC 240
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + L+QS ++GTSI D+LRV +E R +R+M AE+KA L K+T+ ++
Sbjct: 241 GVPDIASFVTVLVQSSQFGTSIADALRVYSAEMRDKRVMRAEEKANKLPTKMTLATMMLT 300
Query: 307 LPVLILVIIGPAILSIIDTMK 327
+P L+ ++IGP+I +I+ ++
Sbjct: 301 VPPLMAMLIGPSIYAIVTSLG 321
>gi|254463054|ref|ZP_05076470.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium HTCC2083]
gi|206679643|gb|EDZ44130.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium HTCC2083]
Length = 323
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 81/320 (25%), Positives = 155/320 (48%), Gaps = 11/320 (3%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F F V + + +L+ I S L+K L++Q
Sbjct: 9 DMMFATFGPNAQLVLLVVLGGMLALLAVPFIMSKEVDPLDK-----------LKEQMQGK 57
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ + +K L + K L K I KL AG+R + ++ + +++++
Sbjct: 58 AAGEDRQRLRAAKGNKQLGKYAKLLEPKDEAEYSAIRLKLIQAGYRDKDAVRLFHLMQMI 117
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +IFL++G+++ Q + V+ G G+ P WI+ + R+ I+
Sbjct: 118 LGVIFLVIGLLYYTFVISGENATTQQMLMYVLGPGGAGYFLPKYWITRRIDTRKEQIESG 177
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PD+LD++L+CVE+G S+DQ++ RVA ++ L++E + E+ ++ +
Sbjct: 178 FPDSLDMMLVCVEAGQSLDQSIVRVAAELHHSYPFLADEYEIVAQEMKAGKDKIAVLNDM 237
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + V + LIQS +GTSI ++LRV E R +R+M AE+KA L K+T+
Sbjct: 238 SERCGVQDVASFVTVLIQSTSFGTSIAEALRVYAGEMRDKRVMRAEEKANKLPTKMTLAT 297
Query: 303 IIFFLPVLILVIIGPAILSI 322
++ +P L+++++GP+++ I
Sbjct: 298 MMLTVPPLLIILVGPSVVGI 317
>gi|260427288|ref|ZP_05781267.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
gi|260421780|gb|EEX15031.1| type II/IV secretion system protein, TadC subfamily [Citreicella
sp. SE45]
Length = 324
Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 78/317 (24%), Positives = 161/317 (50%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+FD + + ++ A + L + ++ + L K + ++
Sbjct: 1 MFDNLTAMITERLGPAGPLMVVAGLALLLILSTVPLLLRQKPDPMDKLAKSGRARIDAET 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ TR + L + + L K+ + KL AG+R+ S+ + + ++V+ +
Sbjct: 61 KAILRDTRRNAKLNKYAQYLEPKSAEELGQMRLKLLQAGYRTPDSVRLYYLAQMVLGLGL 120
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L G + + + Q ++ ++ G VG+ AP WI+ V++R+ I+ +PDAL
Sbjct: 121 LAAGTAYYVMFKDGPDATMQTKLMYIVGPGAVGYLAPKYWITKRVEERKKQIEEGFPDAL 180
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++L+CVE+G S+DQ++ RV++++ L++E + E+ ++ + R
Sbjct: 181 DMMLVCVEAGQSLDQSIVRVSKELRASYPALADEFEIISHEMRAGKDKSNVLNDMGERCG 240
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + L Q+ +GTSI D+LR+ SE R +R+M AE+KA L K+T+ ++ +
Sbjct: 241 VQDVSSFVTVLNQAANFGTSIADALRIYASEMRDKRVMRAEEKANKLPTKMTLTTMMLTV 300
Query: 308 PVLILVIIGPAILSIID 324
P L+++++GP+++SI +
Sbjct: 301 PPLLIILVGPSVVSISE 317
>gi|89068023|ref|ZP_01155440.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
gi|89046262|gb|EAR52319.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
Length = 987
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 73/271 (26%), Positives = 146/271 (53%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
R++ + + + + L + L + I KL AG+R++ ++ +
Sbjct: 712 RRESDETKNLMKGEKLRQKKGTDKLDKYSNFLEPQDKAEYSAIQLKLLQAGYRTKNAVRL 771
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ + I+ L+LG+ + ++ + Q + ++++ G G+ P W++ Q+R
Sbjct: 772 YHFAQFALGIVMLLLGVAYAIWKNQTGDPTTQSTILSILIPGSAGYMLPKYWVNKRQQER 831
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
Q I+ +PD+LD++L+CVE+G S+DQ++ RVA ++ L+ E L E+ ++
Sbjct: 832 QQEIENGFPDSLDMMLVCVEAGQSLDQSIIRVARELKTGFPALAWEYELVAYEMKAGKDK 891
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
++ R ++ V + LIQS ++GTSI ++LRV E R +R+M AE+KA +L
Sbjct: 892 ISVLKDMSERCGVNDVASFVTVLIQSQQFGTSIAEALRVYAGEMRDKRVMRAEEKANTLP 951
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
K+T+ ++ +P L++++IGP++ I DT+
Sbjct: 952 TKMTLATMMLTVPPLLIILIGPSVFDIYDTL 982
>gi|126737249|ref|ZP_01752984.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
gi|126721834|gb|EBA18537.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
Length = 322
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 72/311 (23%), Positives = 152/311 (48%), Gaps = 10/311 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + A+ + L+K +++A E ++ +
Sbjct: 17 LLVLGFFGFALIAFAAIYLIRQPEDPLKKLQRNIAPETRKSASKERLRQNDRNEQ----- 71
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L+ F L + + KLR AG+ S+ ++ +L + +I L G+ +
Sbjct: 72 -----LQKFATFLEPQDAEELSAMELKLRQAGYLSKDAVRFFFFAQLALALIGLAGGMFY 126
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
++ + + + Q + ++ G VG+ P W++ V++R+ I++ +PD+LD++L+CV
Sbjct: 127 VYVLNADMTFDTQQLLIRIVGPGAVGYMLPKYWVTRRVEERRQKIEQGFPDSLDMMLVCV 186
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G S+DQ++ RVA ++ L+ E + E+ +++ + R + + +
Sbjct: 187 EAGQSLDQSIVRVATELRASFPDLAYEFEIVAQEMKAGKDKEKVLRDMGTRCGVQDISSF 246
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L++++
Sbjct: 247 VTVMIQSQSFGTSIADALRVYAGEMRDKRVMRAEEAANKLPVKMTLATMMLTVPPLLIIL 306
Query: 315 IGPAILSIIDT 325
+GP++ I++
Sbjct: 307 VGPSVQGILNM 317
>gi|332188365|ref|ZP_08390090.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
gi|332011594|gb|EGI53674.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
Length = 332
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 102/310 (32%), Positives = 170/310 (54%), Gaps = 1/310 (0%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ V +F L+ A + +++R++++ RE L+ S ++ + RT
Sbjct: 17 AMLWGVCVFCLLVAGYMLIGTRDPMKRRVQALNERREQLKAGIDPSPKRRAQF-IERTDL 75
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ +R + L + + + KL AG RS+ ++ RL +PI +W++
Sbjct: 76 LERMRRVLSALKMLQEDQVKAVQLKLLQAGIRSKEMAVAVIFGRLALPIALGGGMALWVY 135
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G + ++ R V + + + AP + + N + KR +I++ PDALDL++IC E+
Sbjct: 136 GTEDFAQWSGFSRYMMVAGMLVLSYKAPDLALKNQIDKRTHAIRKGLPDALDLMVICAEA 195
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+++D A RVA ++ L +E LT EL FL +R+ A EN R +D +R
Sbjct: 196 GLTVDAAFARVARELRRAYPELGDEFQLTSVELGFLTDRRQALENLSMRVNLDALRGVVT 255
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+IQ+++YGT + SLRVL +E R+ER+M AE+KAA L +TVP+I+F LP L +VI+G
Sbjct: 256 TMIQTEKYGTPLASSLRVLSAEFRNERMMRAEEKAARLPAIMTVPLILFILPTLFIVILG 315
Query: 317 PAILSIIDTM 326
PA SI DT+
Sbjct: 316 PAGCSINDTL 325
>gi|94497258|ref|ZP_01303830.1| type II secretion system protein [Sphingomonas sp. SKA58]
gi|94423363|gb|EAT08392.1| type II secretion system protein [Sphingomonas sp. SKA58]
Length = 329
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 105/309 (33%), Positives = 175/309 (56%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ ++ ++++A+ + KR+K++ RE L+ S K A + +
Sbjct: 21 LLAGLATLAVLFALYAVMTVRDPMAKRVKALNERREQLKAGITASTAKRRAKLVKSNQTT 80
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+R+F+ L + +++ +L AG RS+ ++ R+++PI + I ++G
Sbjct: 81 DQMRSFLSSLKVLQDDQLKDVQVRLAQAGIRSKDLAVAVIFGRMILPIAIGGMAAILLYG 140
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L E+ R A + + + AP ++I N VQKR ++I++ PDALDLL+IC E+G
Sbjct: 141 VGILPEWGPMKRFFAFAVALLLSYKAPDLFIDNKVQKRSAAIRKGLPDALDLLVICAEAG 200
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+++D A RVA ++G L +E LT ELSFL R++AFEN +R ++D V+
Sbjct: 201 LTVDAAFARVARELGKAYPELGDEFHLTAIELSFLTERRMAFENLASRVKLDAVKGVVTT 260
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+++YGT + +LRVL +E R ER+M AE+KAA L +TVP+I+F LP L +VI+GP
Sbjct: 261 MIQTEKYGTPLASALRVLSAEFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGP 320
Query: 318 AILSIIDTM 326
A SI
Sbjct: 321 AACSISAAF 329
>gi|254475205|ref|ZP_05088591.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
gi|214029448|gb|EEB70283.1| type II/IV secretion system protein, TadC subfamily [Ruegeria sp.
R11]
Length = 327
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 80/322 (24%), Positives = 160/322 (49%), Gaps = 9/322 (2%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
+ F +A+ + +F ++ A+ + + K+++ E +K Q
Sbjct: 9 DLLINQFGPFGPLLAVGL-LGLFMILLAIPLLLNQPEDPMKKLQRSMSESTRDKKPQKER 67
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
L++ + +L + F L + + KLR AG++S+ S+ + +
Sbjct: 68 LRQADRNEQL--------QKFASFLEPQNADELSAMELKLRQAGYQSKDSVRLFHFAQFA 119
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ L+ G+++++ + +EY Q + +I G + P WI+ +++R+ I
Sbjct: 120 LGLVGLVAGLVYVYVLNADMEYDSQQMIIRIIGPGAAAYMLPKYWITRRIEERKQEITSG 179
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALD++L+CVE+G S+DQA+ RVA+++ L+EE + E+ + +
Sbjct: 180 FPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPALAEEFEVVAYEMKAGKEKDKVLRDM 239
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + V + +IQS +GTSI D+LRV E R +R+M AE+ A L K+T+
Sbjct: 240 GTRCGVQDVSSFVTVMIQSATFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTLAT 299
Query: 303 IIFFLPVLILVIIGPAILSIID 324
+ +P L+++++GP+ I +
Sbjct: 300 MTLTVPPLLIILVGPSAQGIAN 321
>gi|85705157|ref|ZP_01036257.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670479|gb|EAQ25340.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 325
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/311 (25%), Positives = 151/311 (48%), Gaps = 3/311 (0%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ + ++ V+ L + + R K + KQ T ++ +
Sbjct: 14 ALGPFGPLIAVGGLGVMLVLVTIPMMLRQKQ---DPLDKLKQARTQEALGVKTNLRAGKQ 70
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+K L + L + + KL AG+R ++ + + I LILG+I+
Sbjct: 71 NKKLDRYATFLEPQNEKQLSEMRLKLMQAGYRHRDAVRYFHFAQFALGIGLLILGVIYYV 130
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ E Q + ++ +G+ P WI+ QKRQ I+ +PD+LD++L+C+E+
Sbjct: 131 LFKSGTETSTQETLMYILGPAGIGYMMPKYWITKRQQKRQEEIQDGFPDSLDMMLVCIEA 190
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+DQ++ RVA ++ L+EE + ++ ++ R + + +
Sbjct: 191 GQSMDQSIIRVASEMRASYPALAEEFEIVSLQIKAGRDKPSVLNEMAERCGVQDITSFVT 250
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++QS +GTSIG++LRV +E R +R+M AE+KA L K+T+ ++ +P L+++++G
Sbjct: 251 VMVQSQTFGTSIGEALRVYAAEMRDKRVMRAEEKANKLPTKMTLATMMLTVPPLLIILVG 310
Query: 317 PAILSIIDTMK 327
P++L I+
Sbjct: 311 PSVLGIMKLFA 321
>gi|21673275|ref|NP_661340.1| TadC protein [Chlorobium tepidum TLS]
gi|21646364|gb|AAM71682.1| TadC protein [Chlorobium tepidum TLS]
Length = 312
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 77/321 (23%), Positives = 161/321 (50%), Gaps = 12/321 (3%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ DA + + + ++ S+++A+ L ++KR+ + +R
Sbjct: 1 MLDALQFLTIVLSGAAVASVVFALYNWWLS-NTVKKRLSQIVRQRWAPADVASPRKPTP- 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ ++ N + KL+L + + AG R++ + V+ + ++
Sbjct: 59 -------QKIDTVINILSKLSLPEEGWQSSTVRTRFLQAGIRNKNAPQYYYAVKTL--LV 109
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F + ++++F + P L + ++L G+ P + + + +KR ++ + PD
Sbjct: 110 FGLPVMLFLFLRFAQPKLPVILFLIFMLLSAAAGYYLPEIVMDFITKKRVERMRNSLPDM 169
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L+++C ESG+SID A+ R+++++ L++E L E+ R + N RT
Sbjct: 170 IELMVVCTESGMSIDAAIARISQEMARTHPDLAQEFYLAGLEMRAGATRIDSLRNMALRT 229
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D + + LIQ++++GTS+ +SLRV R++R AE+ AA + KL +P+ +F
Sbjct: 230 SLDELHDLVSMLIQAEKFGTSMAESLRVQSEVMRTKRTQRAEELAAKIPVKLVLPLGLFI 289
Query: 307 LPVLILVIIGPAILSIIDTMK 327
P L++V++GPAIL +ID +K
Sbjct: 290 FPTLLIVMLGPAILQLIDVLK 310
>gi|254486075|ref|ZP_05099280.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214042944|gb|EEB83582.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 308
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/308 (24%), Positives = 151/308 (49%), Gaps = 10/308 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + + + V++ M+ L++ Q ++ S ++
Sbjct: 6 WIVLLGVLGVMMIGMTVIML----------MRQPQDPMAKLKRSQTEPSERPSQQRLRQS 55
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ L+ F K L + + LR AG+ S ++ ++ + I L+ GI++
Sbjct: 56 DRNEQLQKFAKFLEPENLDELTAKQLMLRQAGYSSRDAVRFFHFAQMALGIGGLVFGIVY 115
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ Q + + G +G+ P W++ V+KR+ I R +PDALD++L+CV
Sbjct: 116 VNFLGGGEGLTTQKMMMYTVGPGGIGYYLPKYWVTKRVEKRKEEITRGFPDALDMMLVCV 175
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G S+DQ++ RVA+++ L+EE + E+ ++ + +R + V +
Sbjct: 176 EAGQSLDQSIVRVAKELHASYPALAEEFEVVAYEMKAGKDKVGVLTDMGDRCGVQDVSSF 235
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L QS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L++++
Sbjct: 236 VTVLCQSAAFGTSISDALRVYAEEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIIL 295
Query: 315 IGPAILSI 322
+ P++++I
Sbjct: 296 VAPSVMNI 303
>gi|170750194|ref|YP_001756454.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656716|gb|ACB25771.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 136/325 (41%), Positives = 205/325 (63%), Gaps = 1/325 (0%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + + AV+ + YAV P L + L KRMK V+ ERE +R+++
Sbjct: 1 MIDAIAEKLFDPRFMGTVLAAVAAAATAYAVAQPFLETDRLGKRMKLVSDEREQIRRRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
S ++ + LRT +++ V++ L+ L + KL AG+R + + L R
Sbjct: 61 LSAERTGNRATLRTEPKAYMKSIVERYQLRRWLGTDTAKRKLMQAGYRGQGAETAFLFFR 120
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LVVP++ +I + ++F ++L+ + +R G VI Y+G AP +++ N +KRQ+ I+
Sbjct: 121 LVVPVVAVIAALFYLFVL-EVLDASYLMRFGLVIGAAYMGIKAPELFLVNTAKKRQTEIR 179
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+AWPDALDL LICVESG++I+ A R+V+ +I SV L+EE+ L AE+SFLP+R+ A+E
Sbjct: 180 KAWPDALDLTLICVESGMAIENAFRKVSTEIATSSVVLAEELALMTAEMSFLPDRRQAYE 239
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V++ ALIQ++RYGT +G +LRVL E+R R+ EAEKKAA L PKLTV
Sbjct: 240 NLVMRTGLEPVKSVATALIQAERYGTPVGQALRVLSQESRDMRMNEAEKKAAGLPPKLTV 299
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
PMI+FFLPVL +VII PA++ I+ T
Sbjct: 300 PMILFFLPVLFVVIITPAVIQIMRT 324
>gi|89053483|ref|YP_508934.1| type II secretion system protein [Jannaschia sp. CCS1]
gi|88863032|gb|ABD53909.1| type II secretion system protein [Jannaschia sp. CCS1]
Length = 326
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 87/330 (26%), Positives = 160/330 (48%), Gaps = 11/330 (3%)
Query: 3 HYFFDLFDATELAVA-----ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK 57
+ DLFD+ + + +++ L + + +L ++K+ R+
Sbjct: 2 EFLTDLFDSANAFLIDQLGELGPLIAVGGLGVLLCLVAL-PTLMKKQKDPYKKLRDE--- 57
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ T K + ++ L F + L + ++ AG+R++ S+ +
Sbjct: 58 RGGTGKAKGKKDGLRLSSKNEKLERFAQYLEPQDEQELSATQLQMIRAGYRAKSSIQMFN 117
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+L + + L+LG +++ Q + VI+ G VG+ AP WI+ Q R+
Sbjct: 118 FAKLALALGGLLLGTLYVLITG--GGGSAQNSILFVIVPGVVGYYAPKYWITKRAQTRED 175
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I +PDALDL+L+CVE+G S+DQA+ +VA +I PL+EE + E+ ++
Sbjct: 176 QINSGFPDALDLMLVCVEAGQSLDQAIIKVANEIKTSYPPLAEEFEIVSYEMKAGKDKTK 235
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ R + V + LIQS +GTS+ ++L+V E R +R+ AE+KA L K
Sbjct: 236 VLRDMGERVGIQDVNSFITTLIQSSTFGTSVAEALKVYSDEMRDKRISRAEEKANKLPTK 295
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LT+ ++F +P L++++IGP+I I +
Sbjct: 296 LTLFTMLFCVPPLLVILIGPSIYGIATDLA 325
>gi|294012437|ref|YP_003545897.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292675767|dbj|BAI97285.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 330
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 100/295 (33%), Positives = 162/295 (54%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ KR+K++ RE L+ S + A + + + +R+F+ L +
Sbjct: 36 YAVMTVRDPMAKRVKALNERREQLKAGITASTARRRAKLVKKNQATDQMRSFLSNLKVLQ 95
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ KL AG RS+ ++ RL++PI+ + + ++ E+ R
Sbjct: 96 DDQLKEAQIKLAQAGIRSKDWAVAVIFGRLILPIVIGGMAALLLYAVGIYPEWGGAKRFM 155
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A + + AP ++I N +QKR ++I++ PDALDLL+IC E+G+++D A RVA ++
Sbjct: 156 AFAGALLLSYKAPDIFIDNKIQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVAREL 215
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L +E LT ELSFL R++AFEN R ++D ++ +IQ+++YGT + +
Sbjct: 216 GKAYPELGDEFHLTAIELSFLTERRMAFENLATRVKLDAIKGVVTTMIQTEKYGTPLASA 275
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
LRVL +E R ER+M AE+KAA L +TVP+I+F LP L +VI+GPA SI
Sbjct: 276 LRVLSAEFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGPAACSISQAF 330
>gi|114705450|ref|ZP_01438358.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540235|gb|EAU43355.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 328
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 141/318 (44%), Positives = 208/318 (65%), Gaps = 2/318 (0%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD--SA 68
E+ ++ ++++F+ + AVV+P L L+ RMKSVA+ER+ +R ++ L +D
Sbjct: 11 EPEVFFSVVLSLAVFASVLAVVLPQLERNRLQSRMKSVAIERDEMRARERARLGRDKGGK 70
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + + + V LNL+ LVD+ + KLR AGFRS+ L + L +R+ + +
Sbjct: 71 PSLRQVEERGFVSRVVTSLNLRKALVDDATIAKLRVAGFRSQRHLTLFLFLRIALALALF 130
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+++ G L E P +R+ A + Y+GF P +++ N KRQ+SI+RAWPDALD
Sbjct: 131 AFAALYVLGLGLLAEQPLMMRIVACVGAAYIGFVLPVMYLRNAATKRQASIQRAWPDALD 190
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LLLICVESG SI+ + R+VAE+IG QS+ L+EE++LT AELS+LP R+ A++N RT +
Sbjct: 191 LLLICVESGKSIEASFRKVAEEIGIQSIALAEELMLTCAELSYLPERRTAYDNLILRTDL 250
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ VR AL Q++RYGT IG +LR + E R R+ AEKKAA+L PKLTVPMI+FFLP
Sbjct: 251 EGVRATMTALTQAERYGTPIGSALRTMAQENRDLRMNAAEKKAAALPPKLTVPMIVFFLP 310
Query: 309 VLILVIIGPAILSIIDTM 326
VL+ +I+ PA +S+ID M
Sbjct: 311 VLMAIILAPAAISMIDAM 328
>gi|292491527|ref|YP_003526966.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580122|gb|ADE14579.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 320
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 81/300 (27%), Positives = 146/300 (48%), Gaps = 2/300 (0%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
+AV++ + + + VA + +R++ + + ++++ +
Sbjct: 21 FFAVIMGVATTLFVLALLLLVAGLSDPVRRRLRSIANSGHHDRKTTDAVAEAIAPLSPYI 80
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ KL AG+RS +L + ++L+ II + I + ++
Sbjct: 81 LPRQEWERSKTTTKLVHAGYRSGNALTLFYAIKLLSGIILPAIAIFLTTIF--YPKFTTF 138
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V + + ++G P++ + L++KRQ I +PD LDLL+ C E+G+ ++ AL+RV
Sbjct: 139 QIVFLGLFLSFIGLLFPNIVLERLIKKRQRQIYNGFPDVLDLLITCTEAGLGLNAALKRV 198
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
AE+ LS E+ L E+ NR A +NF R ++ + + L QS R+GTS
Sbjct: 199 AEECAVSHPVLSGELTLVNMEIRAGVNRVEALKNFSARAGIEEIHSFVAFLSQSLRFGTS 258
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
I D+LR+ E R +R+ AE+ AA +G K+ P+I LP LV IGPA+L ++ +
Sbjct: 259 IADTLRIYSDEFRDKRMQRAEEMAAKMGTKMIFPLIFCILPSFFLVAIGPAVLGVLKALG 318
>gi|258405283|ref|YP_003198025.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797510|gb|ACV68447.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 320
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 83/318 (26%), Positives = 157/318 (49%), Gaps = 1/318 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
A L + + A+ + + + + L +KR ++ + + DS+
Sbjct: 1 MPADYLPLIMAGAIFVSLFLLMIGVMQLVRSNSKKRAILEKIQTSNQQSAFGDPQRLDSS 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + + +K+ + + + AG RS + + +++++P+
Sbjct: 61 RSGFFGKIFGFVGLVGQKVAKDRVSDHTVLRPRFLKAGIRSPLAPAVFWGLKVIMPLALP 120
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++ + L P + +L GF P +W++N QKR+ +I + +PDALD
Sbjct: 121 LCFGLFYYLIPDLTLSPTNTLLIITVL-AVAGFYVPDLWLTNKRQKRRQTILKGFPDALD 179
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A+ RVA++ + LSEE+ E R+ A +N RT +
Sbjct: 180 LMVVCVEAGMGLDAAISRVAKESKSNNATLSEELHFFTLETRAGMPRKDALKNLAMRTDL 239
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++N T LIQ++++GTS+ +L+V R+ER AE+KAA + KL P+I+F P
Sbjct: 240 QQMQNLTTLLIQTEKFGTSVSQALKVFSESMRTERFQRAEEKAAKIPVKLLFPLIMFIFP 299
Query: 309 VLILVIIGPAILSIIDTM 326
L + I+GPA++ I T+
Sbjct: 300 SLFVAILGPAVIRISQTL 317
>gi|224824220|ref|ZP_03697328.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224603639|gb|EEG09814.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 314
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 79/318 (24%), Positives = 151/318 (47%), Gaps = 12/318 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ V++F + + + ++ R+ ++ + + +
Sbjct: 1 MNTSQWIYLGIIFVAVFGVALTISMQI-APNRVKARLDKIS---------ETETPIDSDS 50
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S + K K I + AG+R + ++ + + + ++F
Sbjct: 51 ASAWVAKAVKIATPLAKLSVPAEGWETSPIRIRFMNAGYRGQSAVPLFFGAKTFLALLFP 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +++ + + ++L +G+ P++ +S V+ RQ I +PDA+D
Sbjct: 111 TILFLYLGLTGGHKDGTNF--LLFMLLAAGIGYYLPNILLSRRVENRQREIFNNFPDAID 168
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LLL+CVE+G+ +D AL +V E++ +S L++E+ L EL ++ A N RT +
Sbjct: 169 LLLVCVEAGLGLDAALLKVGEEMRIKSPILADELHLVNLELRAGSTKERALRNLAIRTGV 228
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V LIQSDR+GTSIG+SLRV + R++R + AE+ AA + KL P+I P
Sbjct: 229 QEVDTLVAMLIQSDRFGTSIGESLRVHADDLRTKRRLRAEEAAAKIPLKLLFPLIFCIFP 288
Query: 309 VLILVIIGPAILSIIDTM 326
L+LV++GPA + I +
Sbjct: 289 ALLLVLLGPAFIQIYRVL 306
>gi|193213109|ref|YP_001999062.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
gi|193086586|gb|ACF11862.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
Length = 313
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/321 (22%), Positives = 151/321 (47%), Gaps = 11/321 (3%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
++ + + ++ S+++A +KR+ + +S
Sbjct: 3 TTLQILTIVLSGAAVASVVFAFYS-LGVDNAFKKRLTQI-------FSGSGAPPADKPSS 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++++ ++ N + KL+L + K AG R++ + ++ ++ ++F
Sbjct: 55 KPVKSQRVATVVNILSKLSLPDEGWQSSAVRVKFLQAGIRNQNAPQYYFAIKTLLTLVFP 114
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + +F + + +L G+ P + + + Q+R ++ PD ++
Sbjct: 115 VL--LALFLVLNQPKLQLIHIILFALLTAAAGYYLPELLLRFITQRRIERMRNGLPDMIE 172
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++IC E+G+SID A R++ ++ LS+E L+ E+ R A N R +
Sbjct: 173 LMVICTEAGMSIDAASTRISREMARSYPDLSQEFYLSSLEMRAGATRLDALRNMALRVGL 232
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + LIQ+D++GTS+ DSLRV R+ R AE+ A + K+ +P+I+F P
Sbjct: 233 EELEDLVSVLIQADKFGTSLADSLRVHSDVMRTRRSQRAEELANKVPVKMLLPLILFIFP 292
Query: 309 VLILVIIGPAILSIIDTMKDH 329
L++V++GPAI+ ++D +
Sbjct: 293 TLLMVLLGPAIIQLLDVLSKQ 313
>gi|294676064|ref|YP_003576679.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474884|gb|ADE84272.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 337
Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 155/329 (47%), Gaps = 5/329 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
+ +A+ ++ L + S L+K KS+A + Q
Sbjct: 6 ITDMLTAWLGPMGPVIALAALGAVLVLAALPALVSRREDPLDKLRKSLAPGSGTVGAAQA 65
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
TS A T L+ F L ++ L AG+R + + V+
Sbjct: 66 TS---KKAQKLRNTAGPDKLQKFAGFLEPQSKEEMSESRKWLHKAGYRGPHVVRHFHAVQ 122
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPF--QLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ I L LG++++ Y+ E P + A++ G G+ AP W++ V R
Sbjct: 123 FALAISLLGLGVLYVLFYNAGHEVPLESTNAIAAILGPGIGGYYAPRRWVNQRVAARTQE 182
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ +PDALD+LL+CVE+G S+DQ + RV++++ L+EE E+ ++
Sbjct: 183 IQDGFPDALDMLLVCVEAGQSLDQGIIRVSKELSSSYPALAEEFATVAHEIKAGLDKPTV 242
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F R+ + V + +IQS ++GTSI ++LR+ ++ R +R+M AE+ A + K+
Sbjct: 243 LRAFAERSGVSDVASFVTVMIQSQQFGTSIAEALRLYAADMRDKRIMRAEEAANKIPTKM 302
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
T+ ++F +P L+++++GP++ +++
Sbjct: 303 TLGTMMFTVPPLLIILVGPSVHDMMENFA 331
>gi|83950071|ref|ZP_00958804.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837970|gb|EAP77266.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 323
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 76/324 (23%), Positives = 160/324 (49%), Gaps = 12/324 (3%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
+ +A+ T + +I V++ + L+K KS + + + +
Sbjct: 6 DFLTANLGEFGPLIAVGTLGLLLIMITVVLMINQPEDPLDKLKKSQKQQGLETKAKLRSG 65
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ + L + L + + KL AG+R+ ++ +
Sbjct: 66 SRNE------------KLDKYANFLEPQDEKQMSEMRKKLLQAGYRNRDAVRYYHFAQFA 113
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L++G+I+ + + + + +++ G +G+ AP W++ Q+RQ I+
Sbjct: 114 LGLGLLVVGVIYFLLFVQGPDTTTTQTILYILVPGAIGYLAPKYWVTKRQQQRQEEIQDG 173
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PD+LD++L+CVE+G S+DQ++ RV+E+I L++E L ++ ++
Sbjct: 174 FPDSLDMMLVCVEAGQSMDQSIVRVSEEIRASYPALADEYQLVAQQIKAGRDKASVLNEM 233
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+R + + + L+QS +GTS+GD+LRV +E R +R+M AE+KA + K+T+
Sbjct: 234 GDRCGVQDISSFVTVLVQSQTFGTSVGDALRVYAAEMRDKRVMRAEEKANKIPTKMTLCT 293
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ +P L+++++GP++L I+D M
Sbjct: 294 MGLTVPPLLIILVGPSVLGIMDLM 317
>gi|307293454|ref|ZP_07573300.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881520|gb|EFN12736.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 330
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 100/295 (33%), Positives = 160/295 (54%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ KR+K++ RE L+ S + A + + + +R+ + L +
Sbjct: 36 YAVMTVRDPMAKRVKALNERREQLKAGITASTARRRAKLVKKNQATDQMRSLLSSLKVLQ 95
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ KL AG RS+ ++ R+++PI + + ++ E+ R
Sbjct: 96 DDQLKEAQIKLAQAGIRSKDWAVAVIFGRMILPIAIGGMAALLLYAVGIFPEWGGAKRFM 155
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A + + AP ++I N VQKR ++I++ PDALDLL+IC E+G+++D A RVA ++
Sbjct: 156 AFAAALLLSYKAPDLFIDNKVQKRSAAIRKGLPDALDLLVICAEAGLTVDAAFSRVAREL 215
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L +E LT ELSFL R++AFEN R ++D V+ +IQ+++YGT + +
Sbjct: 216 GKAYPELGDEFHLTAIELSFLTERRMAFENLATRVKLDAVKGVVTTMIQTEKYGTPLASA 275
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
LRVL +E R ER+M AE+KAA L +TVP+I+F LP L +VI+GPA SI
Sbjct: 276 LRVLSAEFRHERMMRAEEKAARLPAIMTVPLILFILPTLFVVILGPAACSISKAF 330
>gi|254466278|ref|ZP_05079689.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
gi|206687186|gb|EDZ47668.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacterales bacterium Y4I]
Length = 326
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 80/323 (24%), Positives = 155/323 (47%), Gaps = 10/323 (3%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
Y F +A+ A L+ ++ + L+K K++ E + K++
Sbjct: 9 DYLTSHFGEFGPLLALGIAGLFMILLAVPLLLNQPEDPLKKLQKNIKPETRNVPKKERLR 68
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ L+ F L + + KLR AG+ S+ S+ + +
Sbjct: 69 QANRNEQ----------LQKFAGFLEPQNADELSAMELKLRQAGYHSKDSVRLFHFAQFA 118
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ L+ G+ +++ ++Y Q ++ G G+ P WI+ +++R+ I
Sbjct: 119 LGLLGLMGGLFFVYVLKADIDYDSQQMAIRIVGPGAAGYLLPKYWITRRIEERKQKITEG 178
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALD++L+CVE+G S+DQA+ RVA+++ L+EE + E+ + +
Sbjct: 179 FPDALDMMLVCVEAGQSLDQAIVRVAKELHASYPDLAEEFEVVAYEMKAGKEKDRVLRDM 238
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + + + +IQS +GTSI D+LRV E R +R+M AE+ A L K+T+
Sbjct: 239 GTRCGVQDISSFVTVMIQSASFGTSIADALRVYAGEMRDKRVMRAEEAANKLPVKMTLAT 298
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
+ +P L+++++GP+I I++
Sbjct: 299 MGLTVPPLLIILVGPSIQGIMNM 321
>gi|78357408|ref|YP_388857.1| hypothetical protein Dde_2365 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219813|gb|ABB39162.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 324
Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats.
Identities = 79/316 (25%), Positives = 144/316 (45%), Gaps = 3/316 (0%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILR-KQQITSLQKDSASSRL 72
L VA + S+ + + G ++ + V R ++ +L
Sbjct: 9 LLVAALASASVMLAFFGLRGLLNGRQRAKQLQRRVRHHISPTRISGMQSAADTQQGRQQL 68
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + + ++L + L AG+RS + IL + ++ L G+
Sbjct: 69 TAKLNDLMSTIGERLAPRNEEQMGQTNLALVRAGYRSRKAPLILWGAKAGCMLLGLTCGL 128
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + P + I +G P W+S+ V+ R+ ++ + PDALDLL++
Sbjct: 129 LIRLAAGE--TIPAGMLALLFICPAVLGLYLPDAWVSSKVRTRRRLMEDSLPDALDLLVV 186
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ +DQA+ RVA ++ S L EE+ + ++EL R + +N +R ++ V
Sbjct: 187 CVEAGMGLDQAIGRVARELSLSSPVLGEELSMLVSELRAGKTRSESLKNLAHRVGLEDVN 246
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ +IQ+D +GTSI +LRV R+ R AE+ AA + KL P++ LP L +
Sbjct: 247 SLVTLIIQADAFGTSIAHTLRVYSDTMRTTRFQRAEEIAAKMPVKLLFPLVFCILPALFV 306
Query: 313 VIIGPAILSIIDTMKD 328
I+GPA + ++
Sbjct: 307 AIMGPAGIRLMQVFSQ 322
>gi|84516638|ref|ZP_01003997.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
gi|84509674|gb|EAQ06132.1| type II/IV secretion system protein, TadC subfamily [Loktanella
vestfoldensis SKA53]
Length = 316
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/319 (23%), Positives = 149/319 (46%), Gaps = 3/319 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
A + + ++ +V + L + + L+ + + +
Sbjct: 1 MQAIQTLIIDILGPFGPLMVIGLVGFFMILLTLPVVFRRKQDPLDRLKAANRPTNKTER- 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+L + L + + KL +G+RS+ ++ I V+ + I L
Sbjct: 60 --LRAASSKDTLEKYSNFLEPQNAAEYSAVKLKLLQSGYRSKNAVRIYHFVQFALGITGL 117
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G I+ Q + +++ G +G+ P W++ V+ R+ +I A+PD+LD
Sbjct: 118 FGGGIYSLIEMAQRTVNTQELIMMILVPGGIGYMFPKYWVTRRVEVRKEAIINAFPDSLD 177
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+L+CVE+G S+DQ++ RV+ ++ L+EE + E ++ ++ R +
Sbjct: 178 LMLVCVEAGQSLDQSILRVSNELRTGFPELAEEFEIVSQEAKAGKDKTTVLKDMAERCGV 237
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + ++QS ++GTSI D+LRV SE R +R+M AE+ A L K+T+ ++ +P
Sbjct: 238 PDISSFVTVMVQSAQFGTSISDALRVYASEMRDKRVMRAEEAANKLPTKMTLATMMLTVP 297
Query: 309 VLILVIIGPAILSIIDTMK 327
L+ ++IGP+I +I ++
Sbjct: 298 PLMAILIGPSIYAITTSLG 316
>gi|163733537|ref|ZP_02140980.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
gi|161393325|gb|EDQ17651.1| type II/IV secretion system protein, TadC subfamily, putative
[Roseobacter litoralis Och 149]
Length = 327
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/319 (23%), Positives = 147/319 (46%), Gaps = 11/319 (3%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
+ + + T I + ++ + +EK L+KQ T
Sbjct: 10 LIVEFLGPLGPIILLGTLGLIMIGVTVALMLAQPEDPMEK-----------LKKQIQTPG 58
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ ++ L+ F L + + LR AG++S+ ++ + +
Sbjct: 59 SSAPEQRLRQGERNEQLQKFASFLEPQDVAELSARQLMLRQAGYQSQDAVRFFHFAQFAL 118
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L+L +++ + Q + I+ G VG+ P W+ V R+ I R +
Sbjct: 119 GLAGLLLAFVYLNLLGHGEGFTTQKMMIYTIIPGAVGYYLPVYWVRRRVDTRKDEITRGF 178
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD+LD++L+CVE+G S+DQ + RV++++ L++E + E+ ++ +F
Sbjct: 179 PDSLDMMLVCVEAGQSLDQCIVRVSKELHASYPALAQEFDVVAYEMKAGKDKTTVLNDFG 238
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V + L QS ++GTSI ++LRV E R +R+M AE+ A L K+T+ +
Sbjct: 239 ERCGVQDVSSFVTVLNQSQQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLATM 298
Query: 304 IFFLPVLILVIIGPAILSI 322
+ +P L+++++GP++ I
Sbjct: 299 MLTVPPLLIILVGPSVHGI 317
>gi|86137998|ref|ZP_01056574.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
gi|85825590|gb|EAQ45789.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
Length = 326
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 69/271 (25%), Positives = 142/271 (52%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
R Q + K + ++ L+ F L + + KLR AG+ S+ ++
Sbjct: 51 QRAQAPETRGKPQKERLRQNNRNEQLQKFASFLEPQNAEELSAMELKLRQAGYHSKDAVR 110
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ ++ + + L LG+ +++ + E+ Q + +I G G+ P W++ + +
Sbjct: 111 LFHFAQMSLGLAGLALGLFYVYVMNAGFEFDTQALMIRIIGPGGAGYMLPKYWVTRRIAE 170
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ I+ +PD+LD++L+CVE+G S+DQ++ RVA ++ L E + E+ +
Sbjct: 171 RKEEIEAGFPDSLDMMLVCVEAGQSLDQSIVRVASELKASYPQLDYEFDIVAHEMKAGKD 230
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
++ + R + + + +IQS +GTSI ++LRV SE R +R+M AE+ A L
Sbjct: 231 KEKVLRDMGTRCGVQDISSFVTVMIQSAAFGTSIAEALRVYASEMRDKRVMRAEEAANKL 290
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
K+T+ ++ +P L+++++GP++ +I++
Sbjct: 291 PVKMTLATMMLTVPPLLIILVGPSVKNIMNM 321
>gi|260574611|ref|ZP_05842614.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023028|gb|EEW26321.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 326
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 85/275 (30%), Positives = 146/275 (53%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E L+ Q+ T ++ + L+ F L + K+ AG+R++ S
Sbjct: 48 EKLKAQRTTGTAATPGAALRLGDKADKLQKFANFLEPQDEAELSASRLKMLRAGYRAKNS 107
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + +LV+ I L+LG+I+ Q + + I G VG+ P W+++ V
Sbjct: 108 VRMFHFAQLVLGIGLLVLGVIYTLFMSAQGTVSTQTMILSTIGPGAVGYYLPQYWVNSRV 167
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+KRQ+ I +PDALD++L+CVE+G S+DQ++ RVA + L++E + E+
Sbjct: 168 KKRQAEIVSGFPDALDMMLVCVEAGQSMDQSIIRVARESRAGYPALADEFDMVAQEIKAG 227
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R + R + V + L+QS +GTSI ++LRV +E R +R+M AE+KA
Sbjct: 228 KERTTVMRDMSERVGIADVASFVTTLVQSATFGTSIAEALRVYSAEMRDKRVMRAEEKAN 287
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+L KLT+ ++F LP L++++IGP+I +I T+
Sbjct: 288 TLPTKLTLGTMLFTLPPLLIILIGPSIHNIAVTLS 322
>gi|254511547|ref|ZP_05123614.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221535258|gb|EEE38246.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 325
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 79/305 (25%), Positives = 146/305 (47%), Gaps = 5/305 (1%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
V I L +V L + E +K + + +K+ ++
Sbjct: 21 LIVVGILGLFMILVTIPLMLNQPEDPLKKL-----QKSNSAPKNNKKEKKERLRTASRNE 75
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F L K + KLR AG++S+ ++ + + I+ +++G+ + +
Sbjct: 76 QLEKFANFLEPKDQEEYSAVQLKLRQAGYQSKDAVRFYHFAQFALGIVGILIGVSLVTVF 135
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
E+ + V++ G VG+ P WI+ V++R+ +I +PD LDL+L+CVE+G
Sbjct: 136 AGDQEFDSTQLLIRVLVPGVVGYFVPKYWITRRVEERKEAIVNGFPDTLDLMLVCVEAGQ 195
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQA+ RVA ++ ++ E + E+ + +F R + V +
Sbjct: 196 SLDQAIVRVAAEMKASYPDIALEFEVVAYEMKAGKEKDTVLRDFATRCGVQDVSAFVTVM 255
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS +GTSI D+LRV E R +R+M AE+ A L K+T+ ++ +P L+++++GP+
Sbjct: 256 IQSAAFGTSIADALRVYSDEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLVILVGPS 315
Query: 319 ILSII 323
I+
Sbjct: 316 AKGIM 320
>gi|194335919|ref|YP_002017713.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308396|gb|ACF43096.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 316
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 77/318 (24%), Positives = 156/318 (49%), Gaps = 9/318 (2%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
++ + + ++ SL++A++ + + L+KR+ + + ++ +
Sbjct: 4 TLQILTIVLSGAAVASLVFALLNWLVDNNALKKRLTKIIRQSRAPAATSLSKTANTGKVA 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ SK + + K AG R++ + V+ + ++ ++
Sbjct: 64 TVINILSKLS-------LPEEGWQSSGVQIKFLQAGIRNKNAPQNFFAVKTLFTLVLPVV 116
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+++ L+ P + V+ G+ P + + + Q R ++ + PD LDL+
Sbjct: 117 LALFLHFTQPLM--PLARVMILVLFTAAAGYYLPEMLLRFITQNRIERMRNSLPDMLDLM 174
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++C ESG+ ID A+ R++ ++ + L+EE L+ E+ NR A N R+++D
Sbjct: 175 VVCTESGMGIDAAIARISREMVRTNPDLAEEFYLSTLEMRAGANRIDALRNLALRSRLDD 234
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++N L+Q+DR+GTS+ DSLRV R+ R AE+ AA + K+T+P+++F PVL
Sbjct: 235 LQNLVSVLVQADRFGTSLVDSLRVHSDMMRTCRTQRAEELAAKIPVKMTLPLVLFIFPVL 294
Query: 311 ILVIIGPAILSIIDTMKD 328
+LV++GPAI+ +I
Sbjct: 295 MLVLLGPAIIQVIQIFSQ 312
>gi|83943934|ref|ZP_00956391.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954507|ref|ZP_00963218.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840791|gb|EAP79962.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845181|gb|EAP83061.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 305
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 72/296 (24%), Positives = 142/296 (47%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
I + ++ L ++ L++ Q + ++ ++ L+ F K
Sbjct: 5 AILGALGLTMVGATLVMILRQPEDPLAKLKRSQTEAADAGKQQRLRQSDRNEKLQKFAKF 64
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L + + LR AG+ S ++ ++ + I L++G ++I
Sbjct: 65 LEPEDVEELSAKALLLRQAGYSSRDAVRFFHFAQMALGIAGLVIGTVYINFLGGGEGMTT 124
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ + G +G+ P W++ V +R+ I R +PDALD++L+CVE+G S+DQ + R
Sbjct: 125 NKMMLYTVGPGGIGYFLPRYWVTRRVAERKEEITRGFPDALDMMLVCVEAGQSLDQCIVR 184
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA ++ L+EE + E+ ++ R + V + L+QS +GT
Sbjct: 185 VARELRASYPALAEEFEIVAYEMKAGKDKVSVLNAMGERCGVQDVSSFVTVLVQSAAFGT 244
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
SI D+LRV +E R +R+M AE+ A L K+T+ ++ +P L+++++ P++++I
Sbjct: 245 SIADALRVYAAEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVAPSVMNI 300
>gi|163738365|ref|ZP_02145780.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742218|ref|ZP_02149606.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384548|gb|EDQ08929.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388286|gb|EDQ12640.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 326
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/309 (24%), Positives = 154/309 (49%), Gaps = 9/309 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + +F ++ A+ + + K+++ + ++ K +
Sbjct: 21 LLVVGLIGLFMILLAIPLLLNQPEDPLKKLQ---------KSMSASTQTKPKKERLRQAD 71
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ L+ F L + + KLR AG++S+ S+ + + +I L LG+ ++
Sbjct: 72 RNEQLQKFASFLEPQDAAELSKMELKLRQAGYQSKDSVRFFHFAQFALGLIGLALGLFYV 131
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + +EY Q V +I G + P WI+ +++R+ I +PDALD++L+CVE
Sbjct: 132 YVLNADMEYDSQQMVIRIIGPGAAAYMLPKYWITRRIEERKQEITSGFPDALDMMLVCVE 191
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S+DQA+ RVA+++ L++E + E+ ++ + R + V +
Sbjct: 192 AGQSLDQAIVRVAKELHASYPALADEFDIVAQEMKAGKDKDKVMRDMGTRCGVQDVSSFV 251
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+IQS +GTSI ++LRV E R +R+M AE+ A L K+T+ + +P L+++++
Sbjct: 252 TVMIQSATFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMTLTVPPLLIILV 311
Query: 316 GPAILSIID 324
GP+ I +
Sbjct: 312 GPSAQGIAN 320
>gi|77919352|ref|YP_357167.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
gi|77545435|gb|ABA88997.1| Flp pilus assembly protein TadC [Pelobacter carbinolicus DSM 2380]
Length = 326
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 90/312 (28%), Positives = 162/312 (51%), Gaps = 10/312 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AV I T +++ ++ + + L E+R++ + +I K++ L+ +
Sbjct: 19 AVLILTFLTVALIVMGIYLLFLRKSREEERLEKLLPSSKIPFKKKPKLLEGEGN-----G 73
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ + + + K + ++I +L AG+RS + + ++++ +IF + +I
Sbjct: 74 FVTRFAKPIDEIVANKPGALHKSIRLRLIQAGWRSNAAYYNFITTKVLLGLIFPLSYLIS 133
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F + L++ V +L+ +GF P + +V+ RQ+ I RA PDALDL+++CV
Sbjct: 134 RFFFTFSLQF-----VLLCLLLAIIGFGLPDSILGFVVRSRQNRIMRALPDALDLMVVCV 188
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D RRV E+I S LS+E LT E+ R F+N RT + V N
Sbjct: 189 EAGLGLDMTFRRVGEEIRPLSHDLSDEFHLTNLEIRAGKPRNECFKNMSLRTGVPEVSNL 248
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
LIQ+ R+GTS+ +LRV R +R AE+KAA KL P++ F P + +V+
Sbjct: 249 MTILIQTSRFGTSLAKALRVHSDAMRIKRRQIAEEKAAKSTVKLIFPLVFFIFPAIFVVL 308
Query: 315 IGPAILSIIDTM 326
+GP ++ II+ +
Sbjct: 309 VGPGVIRIINVL 320
>gi|149911401|ref|ZP_01900019.1| hypothetical putative tight adherence TadC-related
transmembraneprotein [Moritella sp. PE36]
gi|149805509|gb|EDM65514.1| hypothetical putative tight adherence TadC-related
transmembraneprotein [Moritella sp. PE36]
Length = 325
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 10/327 (3%)
Query: 3 HYFFDLFDATELA-VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
F F E+ AI I + AV + SL SG K + +
Sbjct: 6 QLFETTFADPEMMKWAIYLIAGIAGITLAVALSSLASGLYSPVKKQLNKLSKESTSHDDL 65
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + +S+ + + K D + L AGF S+ +L I ++L
Sbjct: 66 AKEYESSLEHTIDKLNHV------PFINKRYQGDSSTKKLLIHAGFHSQDALKIFNSIKL 119
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ LI G + +++ Y V ++ + + P + + + ++R + +KR
Sbjct: 120 LLL---LISGALVTLLINQISSYSTTKTVYIILFVLGAAYLLPGIILKKIAKRRMADLKR 176
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDALDLL++C ESG+ + ++ +RVA+++ LS E+ L +++ + Q A +
Sbjct: 177 YFPDALDLLIVCCESGLGLLESFQRVAKELQLAHPYLSYELNLVCSKVRYGLTLQQALKE 236
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F +RT ++ +R ++QS R GT + ++R+ E R +RL AE+ AA LG K+ P
Sbjct: 237 FSDRTGLEDIRGLNSVIVQSLRLGTGVAATIRIYSDEYREKRLQAAEENAAKLGVKMIFP 296
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
M+ P +V IGPA+L ++ D
Sbjct: 297 MMCCIWPSFFIVAIGPAVLKVMSVWGD 323
>gi|145219378|ref|YP_001130087.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
265]
gi|145205542|gb|ABP36585.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
265]
Length = 313
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 73/316 (23%), Positives = 153/316 (48%), Gaps = 8/316 (2%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
EL + + ++ S+++ + +L L+KR+ +A + T + + +
Sbjct: 6 ELLAIVLSGATVASIVFVLYNWALAH-TLQKRLTGIAG-----KNPDPTQNEPSGSEAFK 59
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + + K + + K AG RS+ + V+ ++ ++ ++
Sbjct: 60 SAKVTSVINTLSKLSLPEEGWQSSAVQLKFLQAGIRSKNAPRYYFAVKTLLTVVLPVVLG 119
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++++ PF + V+ G+ P + + + QKR ++ + PD +DL++I
Sbjct: 120 LFLYFL--RPGVPFTQSMMLVLSTAAAGYYLPELALRFITQKRHERMRDSLPDMIDLMVI 177
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ ID A+ R++ ++ + L++E L++ E+ R A N RT++ +
Sbjct: 178 CTESGMGIDSAIARISREMARGNPDLAQEFYLSVLEIRAGATRIEALRNLALRTRLKDMD 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ +Q+ ++GT I +LRV RS R AE+ AA + K+TVP+++F P L++
Sbjct: 238 DLVTMFVQAHKFGTGIAQALRVQSDMLRSRRTQRAEEMAAKIPVKMTVPLVLFIFPTLLM 297
Query: 313 VIIGPAILSIIDTMKD 328
V++GPAI+ I++
Sbjct: 298 VLLGPAIIQIMEIFSK 313
>gi|27365114|ref|NP_760642.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|320155497|ref|YP_004187876.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
gi|27361260|gb|AAO10169.1| Flp pilus assembly protein TadC [Vibrio vulnificus CMCP6]
gi|319930809|gb|ADV85673.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
Length = 314
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 142/320 (44%), Gaps = 17/320 (5%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
F+ + +A+ + ++ V+ S ++K+++ + E
Sbjct: 12 QFNEQWVLLALILISTSLLVVTVAVVFSGNRAPVKKKLEQIHKEVS------------GK 59
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A + + +L + + K E+I ++L AGF + +L + +++ ++
Sbjct: 60 ALKKKSRKVENTLESLAPIVVGKDSKEKESIRSQLMHAGFHNRDALTVFYAIKIFFAVLG 119
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
F + + ++ G P++ +++ V+KRQ I+ PDAL
Sbjct: 120 FGGAAAVFFLLPDMDNSTLVM-----VVAVAGGLYIPNIGLNHFVKKRQRMIRAGVPDAL 174
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL++C ESG+ + ALR+VA+++ ++E+ A++ AFE RT
Sbjct: 175 DLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCAKIKAGVEMSTAFEELVTRTG 234
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + L + + G S+ +LR + R +R E E+ AA + K+ P+++F
Sbjct: 235 LSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIFPLLLFIW 294
Query: 308 PVLILVIIGPAILSIIDTMK 327
P +V +GPA+LS+ D +
Sbjct: 295 PCFFIVAVGPALLSLSDALG 314
>gi|37680835|ref|NP_935444.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37199584|dbj|BAC95415.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 329
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 142/320 (44%), Gaps = 17/320 (5%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
F+ + +A+ + ++ V+ S ++K+++ + E
Sbjct: 27 QFNEQWVLLALILISTSLLVVTVAVVFSGNRAPVKKKLEQIHKEVS------------GK 74
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A + + +L + + K E+I ++L AGF + +L + +++ ++
Sbjct: 75 ALKKKSRKVENTLESLAPIVVGKDSKEKESIRSQLMHAGFHNRDALTVFYAIKIFFAVLG 134
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
F + + ++ G P++ +++ V+KRQ I+ PDAL
Sbjct: 135 FGGAAAVFFLLPDMDNSTLVM-----VVAVAGGLYIPNIGLNHFVKKRQRMIRAGVPDAL 189
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL++C ESG+ + ALR+VA+++ ++E+ A++ AFE RT
Sbjct: 190 DLLVVCTESGLGFNAALRKVADELAISHPEFADELDTVCAKIKAGVEMSTAFEELVTRTG 249
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + L + + G S+ +LR + R +R E E+ AA + K+ P+++F
Sbjct: 250 LSEINGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIFPLLLFIW 309
Query: 308 PVLILVIIGPAILSIIDTMK 327
P +V +GPA+LS+ D +
Sbjct: 310 PCFFIVAVGPALLSLSDALG 329
>gi|56697924|ref|YP_168295.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679661|gb|AAV96327.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 326
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 80/306 (26%), Positives = 157/306 (51%), Gaps = 6/306 (1%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV + L ++ L + E +K + R+ +L K ++ ++
Sbjct: 21 LIAVGVLGLFMVLLAVPLLMSQPEDPLKKL------KREMNPNTLAKPKKEQLRQSGRNE 74
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L+ F L + + KLR AG++S+ ++ ++ + ++ L+LG++++F
Sbjct: 75 QLQRFANFLEPQDADELSAMQLKLRQAGYQSKDAVRFFHFAQMALGLVGLVLGVLYVFVI 134
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + Q + V+ G + P WI+ V R+ +I RA+PDALD+LL+CVE+G
Sbjct: 135 EADKDLDGQAMLIRVLGPGGAAYFLPRYWITRRVDTRKENITRAFPDALDMLLVCVEAGQ 194
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ++ RV++++ L++E + E+ + + R + V + +
Sbjct: 195 SLDQSIVRVSKELRASYPDLADEFEMVAYEMKAGKEKDKVLRDMGTRCGVVDVSSFVTVM 254
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS ++GTSI ++LRV E R +R+M AE+ A L K+T+ ++ +P L+++++GP+
Sbjct: 255 IQSSQFGTSIAEALRVYAGEMRDKRVMRAEEAANKLPTKMTLATMMLTVPPLLIILVGPS 314
Query: 319 ILSIID 324
I+D
Sbjct: 315 AKGIMD 320
>gi|114764951|ref|ZP_01444124.1| Putative Flp pilus assembly protein TadC [Pelagibaca bermudensis
HTCC2601]
gi|114542663|gb|EAU45687.1| Putative Flp pilus assembly protein TadC [Roseovarius sp. HTCC2601]
Length = 323
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 76/321 (23%), Positives = 160/321 (49%), Gaps = 10/321 (3%)
Query: 2 PHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
+ + + ++ ++ A+ + G + L K
Sbjct: 5 LNTMITDMLGPAGPLMVVAGLAFLLIVAAIPLMLAGKP----------DPMDKLAKSGRD 54
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ ++ + R + L + + L K+ + KL AG+R+ ++ + + ++
Sbjct: 55 RVDAETKAILRDKRKNAKLNKYAQYLEPKSAEELGEVRMKLLQAGYRTRDAVRLYYLAQM 114
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V+ + L+ G+ + + E Q ++ +IL G +G+ AP WI+ V++R+ I+
Sbjct: 115 VLGLGLLVAGLTYYLMFIDGPESTMQQKLMYIILPGALGYLAPKYWITKRVEERKKQIEE 174
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDALD++L+CVE+G S+DQ++ RV+++I L++E + E+ ++ +
Sbjct: 175 GFPDALDMMLVCVEAGQSLDQSIVRVSKEIRASYAALADEFEIISHEMKAGKDKASVLND 234
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + V + L Q+ +GTSI D+LR+ SE R +R+M AE+KA L K+T+
Sbjct: 235 MGERCGVADVSSFVTVLNQASTFGTSIADALRIYASEMRDKRVMRAEEKANKLPTKMTLT 294
Query: 302 MIIFFLPVLILVIIGPAILSI 322
++ +P L+++++GP++++I
Sbjct: 295 TMMLTVPPLLIILVGPSVVNI 315
>gi|87312288|ref|ZP_01094386.1| probable secretion system protein TadC [Blastopirellula marina DSM
3645]
gi|87284992|gb|EAQ76928.1| probable secretion system protein TadC [Blastopirellula marina DSM
3645]
Length = 309
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 87/306 (28%), Positives = 149/306 (48%), Gaps = 8/306 (2%)
Query: 22 VSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+++F LI A V + R + + ++ ++D + + + K+
Sbjct: 3 LAVFGLITAGVWWLIDSWSPSATRAE---DRLDDIKDPIGKKNREDRSGNAVSKVLEKAT 59
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
F L K + +L AGFRSE + NI L ++ +I LI+G +
Sbjct: 60 PAFAAPLQPKNAKDANALKERLTHAGFRSEAAPNIFLGLKFASLLIGLIVGGGLVVLLGN 119
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + + F PS+ + L +KR+ I R PDALDL+++CVE+G+ +
Sbjct: 120 YNQSDLFKGIAI----AGISFYIPSIGLWYLGKKRKEQIFRGLPDALDLMVVCVEAGLGL 175
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
DQA+RRV+E++ ++EE L +L R NRT +D +R+ LIQ
Sbjct: 176 DQAMRRVSEEMKKTYRVIAEEFGLCNFQLQVGRQRSDVLHELGNRTGVDDLRSLAAILIQ 235
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+D++G+SI +LRV R+ R AE+KAA K+ P++ F P + +V++GPA +
Sbjct: 236 ADKFGSSISQALRVQSDSMRTRRRQIAEEKAAKTAVKMIFPLVFFIFPGIFVVLVGPAAI 295
Query: 321 SIIDTM 326
++I M
Sbjct: 296 TVIREM 301
>gi|283779212|ref|YP_003369967.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437665|gb|ADB16107.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 329
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 90/325 (27%), Positives = 159/325 (48%), Gaps = 6/325 (1%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPS--LGSGELEKRMKSVAVEREILRKQQIT 61
F F A+ I +++F LI A+V + S + + + ++ + +++
Sbjct: 1 MIFTTFFASLQLSPIMVQIAVFGLIAALVWVAVDFFSARNSRAEQRLEDYKDPIARKRRE 60
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
K S + + K L K N+ KL AGFR E + I L +
Sbjct: 61 EAAKKGGSDAMTRMLEAASPALAKPLQPKTAKEATNLKMKLSYAGFRGEGAPQIFLGAK- 119
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ LI+G+ G + Q + V+LI F P + L +KR+ SI
Sbjct: 120 ---FVCLIIGLFLGGGTTVAIMGLSQGALMRVVLIAGGMFYFPDGIVWWLGRKRKESIFL 176
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PDALDL+++CVE+G+ +DQA+R+V+E++ ++EE L +L R +
Sbjct: 177 GLPDALDLMVVCVEAGLGLDQAMRKVSEEMRKSYRVIAEEFSLCNLQLQMGRGRTQVLQE 236
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R+ +D +++ + LIQ+D++G+SI +LRV R+ R AE+KAA KL P
Sbjct: 237 LGSRSGVDDLKSLSSILIQADKFGSSIAQALRVQSDAMRTRRRQIAEEKAAKTAVKLIFP 296
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+++F P + +V++GPA ++++ M
Sbjct: 297 LVLFIFPGIFVVLVGPAAITMVREM 321
>gi|148557757|ref|YP_001265339.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502947|gb|ABQ71201.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 330
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 1/317 (0%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
FD + ++ ++ S+ + +R++++ RE L+ S +
Sbjct: 8 QFFDTLLSIGIALATAIVMLVVGHALVKSIARDPMARRVRALNDRREQLKAGVAASKTRR 67
Query: 67 SASSRLRTRD-SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ ++ + + + + L AG R++ + ++ RLV P+
Sbjct: 68 RQKMDKKASISVDRMKAILGSMKMLQDSQLKAASLSLTRAGIRTKDAAITVIFFRLVSPV 127
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ ++ ++ E + V + AP V++ NL+ KRQ +I++A PD
Sbjct: 128 LIGGTAVVGVYVLHWFPEASAFKQYMIVAGALIASYKAPDVYVKNLITKRQQAIRKALPD 187
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC E+G+S+D A RVA ++ L +E LT EL FL +R+ AFEN R
Sbjct: 188 ALDLLVICAEAGLSVDLAFNRVARELSKAYPELGDEFALTAIELGFLTDRRQAFENLAQR 247
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+D +R +IQ+++YGT + +LRVL +E R ER+M AE+KAA L +TVP+I+F
Sbjct: 248 VNLDSIRGVVTTMIQTEKYGTPLAAALRVLSAEFRHERMMRAEEKAARLPAIMTVPLIMF 307
Query: 306 FLPVLILVIIGPAILSI 322
LPVL +VI+GPA SI
Sbjct: 308 ILPVLFIVILGPAACSI 324
>gi|254506677|ref|ZP_05118817.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
gi|219550258|gb|EED27243.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus 16]
Length = 314
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/329 (20%), Positives = 139/329 (42%), Gaps = 19/329 (5%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQ 59
+ + + ++ +++ + + LG ++ R++ +
Sbjct: 4 LLQFLDSFQINEQTFFLSVILIATVLVMFTLFLVVLGTRAPMKVRLEEL----------- 52
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ R +L + L +++ +L AG+ +L + +
Sbjct: 53 --KKTAPGEKLKKGRRLGNTLDSIAPTLTPSNSKESQSLRQQLMHAGYHDANALTVFYAI 110
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + ++ + + + F + A++ VG P++ ++ V KRQS I
Sbjct: 111 KGMAILVGVGIAAMLYFFVPDMSNLK-----LAMVASVAVGLYTPNIGLNYFVNKRQSRI 165
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ PDALDLL++C ESG+ ALRRVA+++ ++E+ ++ AF
Sbjct: 166 RGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCVKIKAGVEMSDAF 225
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++ RT + + L + R G S+ +LR + R +R E E+ AA + K+
Sbjct: 226 DDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEIEEIAAKIPTKMI 285
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
P+++F P +V IGP++LSI T+ +
Sbjct: 286 FPLLLFIWPCFFIVAIGPSMLSITSTLGN 314
>gi|253996761|ref|YP_003048825.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983440|gb|ACT48298.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 312
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 81/318 (25%), Positives = 152/318 (47%), Gaps = 13/318 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ + +++F + ++ + L R+K + ++ ++
Sbjct: 1 MNTIQIIYLVLIFITVFVVAMVII-GQFSTSPLGARLKVLKDDKP----------DENDD 49
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+R K K K + + AG RS + + ++ +
Sbjct: 50 EPVWISRIVKLTGPIAKLSLPKEGWEHSQLRIRFMNAGLRSPSVPILFFAAKTILTLALP 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L +++ + + +IL+ +G+ P+ +S+ + R+ I ++PDALD
Sbjct: 110 SLFLLYTVISGSV--VKPNNLMMMLILLAAIGYFLPNAVLSHRIDSRKREIFESFPDALD 167
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVESG+ +D AL RV E++ +S L EE+ L EL +R+ A N RT +
Sbjct: 168 LIIVCVESGLGLDAALARVGEEMHVRSPTLGEELHLINLELRAGSSRERALRNLALRTGV 227
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V L+QSDR+GT+I DSLRV R++R + AE+ AA + KL P+I F P
Sbjct: 228 EEVDTLVAMLVQSDRFGTNISDSLRVHADSLRTKRRLLAEEAAAKIAVKLLFPLIFFIFP 287
Query: 309 VLILVIIGPAILSIIDTM 326
++LV++GPA ++I + +
Sbjct: 288 SMLLVLLGPAFINIHNIL 305
>gi|86147459|ref|ZP_01065771.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
gi|85834752|gb|EAQ52898.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
Length = 323
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/296 (21%), Positives = 125/296 (42%), Gaps = 19/296 (6%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ L+K++K ++ R SSR + +L + +
Sbjct: 41 FLFVGTRSPLDKKLKQISSGRHT--------------SSRKPYDFTNTLESLTPFIGRGN 86
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+E KL AG+ + +L++ +++ ++ + + + +
Sbjct: 87 KKDNETYSEKLMHAGYHEKSALSVFYAFKVLSALVGFVCAFMVFYLAIGGSYNNLLIVTC 146
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+VG P+ +S + + RQ IK PDALDLL++C ESG+ + AL RVA ++
Sbjct: 147 I-----FVGTFLPNFILSKMQKDRQRKIKNGVPDALDLLVVCTESGLGFNAALGRVANEL 201
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L++E+ A++ A RT + + L + R G S+ +
Sbjct: 202 YISQPELADELDTVFAKIQAGVTMPDALSQLVERTGLHELDGLVSLLSHASRMGGSLAQT 261
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LR + R +R AE+ AA + K+ PM++F P +V +GP ++ ++D +
Sbjct: 262 LRDYTEDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFIVALGPGMMIVMDALS 317
>gi|146276356|ref|YP_001166515.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554597|gb|ABP69210.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 323
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 88/326 (26%), Positives = 150/326 (46%), Gaps = 12/326 (3%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
Y D +A+ + I + + + E R+K+ Q T
Sbjct: 10 YLIDSLGPLGPLMAMG-MLGILLIALTLPVMLKKRDEPFDRIKA-----------QRTVG 57
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ + R+ ++ L F L K K+ AG+RS+ ++ + +
Sbjct: 58 AAPVSQALRRSSGTEKLDRFANLLEPKTAEELSASRLKMMRAGYRSKGAVRAFHAAQFAL 117
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ FL+LG+++ Q V +L G +G+ P WI Q+R I +
Sbjct: 118 GVGFLVLGVLYALLASATAPLTMQQMVIYTLLPGAIGYYLPVYWIKRRAQERHDQIVAGF 177
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALD++L+CVE+G S+DQ++ RVA + L+EE + E+ R ++
Sbjct: 178 PDALDMMLVCVEAGQSLDQSILRVARESASGYPALAEEFEMVAHEVKAGKERVAVLKDMA 237
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V + LIQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ +
Sbjct: 238 ERVGIPDVSSFVTTLIQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTM 297
Query: 304 IFFLPVLILVIIGPAILSIIDTMKDH 329
+ +P L+L++IGP++ I +
Sbjct: 298 LLTVPPLMLILIGPSVYGIATQLGGQ 323
>gi|148976656|ref|ZP_01813343.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
gi|145964007|gb|EDK29265.1| putative tight adherence TadC-related transmembrane protein
[Vibrionales bacterium SWAT-3]
Length = 323
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/296 (21%), Positives = 129/296 (43%), Gaps = 19/296 (6%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ L+K++K +A ++ASSR + +L + +
Sbjct: 41 FLFVGARSPLDKKLKQIAG--------------GNNASSRKPYDFANTLESLTPFIGRGN 86
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+E KL AG+ + +L++ ++++ +I + + + +
Sbjct: 87 QKDNETYSEKLMHAGYHEKSALSVFYALKILSMLIGFVCAFVVFYLSIGGSYNNLLIITC 146
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+VG P+ ++ + ++RQ I+ PDALDLL++C ESG+ + AL RVA ++
Sbjct: 147 I-----FVGTFLPNFLLNKMQKERQRKIRNGVPDALDLLVVCTESGLGFNAALGRVANEL 201
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L++E+ A++ A RT + + L + R G S+ +
Sbjct: 202 YISQPELADELDTVCAKIQAGVTMPDALTQLVERTGLHELEGLVSLLSHASRMGGSLAQT 261
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LR + R +R AE+ AA + K+ PM++F P +V +GP ++ ++D +
Sbjct: 262 LRDYTDDFRDKRQQAAEEIAAKIPTKMLFPMLLFIWPCFFIVALGPGMMIVMDALS 317
>gi|163745841|ref|ZP_02153200.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
gi|161380586|gb|EDQ04996.1| type II/IV secretion system protein, TadC subfamily, putative
[Oceanibulbus indolifex HEL-45]
Length = 326
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 76/308 (24%), Positives = 139/308 (45%), Gaps = 10/308 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I + + + +V+ ++ L++ + ++
Sbjct: 21 LIIIIGTLGVTLVALTLVMM----------LRQPEDPLSKLKRTSSAPAADGARQQLRQS 70
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L+ F K L + + LR AG+RS ++ + + + I+ L+ G+++
Sbjct: 71 DQNAQLQKFAKFLEPEDVAELSAKQLMLRQAGYRSRDAVRLYYFAQFALGILGLVGGLVY 130
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
Q + I G +G+ P W+ V R+ I R +PDALD++L+CV
Sbjct: 131 TKVLGGGEGMTTQQTMMWAIGPGAIGYYLPKYWVRRRVDSRKEEITRGFPDALDMMLVCV 190
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G S+DQ + RV ++ L+EE + E+ +R + R + V +
Sbjct: 191 EAGQSLDQCIVRVGRELRASYPALAEEFEMVAYEMKAGKDRITVLNDMSERCGVQDVSSF 250
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
LIQS +GTSI D+LRV E R +R+M AE+ A L K+T+ + +P L++++
Sbjct: 251 VTVLIQSAAFGTSIADALRVYAEEMRDKRVMRAEEAANKLPTKMTLATMGLTVPPLLIIL 310
Query: 315 IGPAILSI 322
IGP+ I
Sbjct: 311 IGPSAHGI 318
>gi|32473987|ref|NP_866981.1| secretion system protein TadC [Rhodopirellula baltica SH 1]
gi|32444524|emb|CAD74523.1| probable secretion system protein TadC [Rhodopirellula baltica SH
1]
Length = 328
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 12/314 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGS------GELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
T ++IF+ + + L E R++ + + +R I + +K +
Sbjct: 19 LTTIAIFASVTSFAWFVLSKVGGDDQAPAESRLERMKDAKRGIR--DIAADEKQRTKNEA 76
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
T + + + KL AGFR E + I +++LV + L+LG
Sbjct: 77 LTEALEKAATPIASSVSGNEEEMGKLREKLINAGFRRESAPVIFKLIQLVCTGVGLMLGG 136
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ D L + + ++L GF PS+ + + KR+ I PDALDL+++
Sbjct: 137 VTGAVLDGLTQG----MIIKLLLGMIGGFMIPSLILGFMASKRREKIFLGLPDALDLMVV 192
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ +DQALR+VAE++ + EE ++ +L R R+ +D ++
Sbjct: 193 CVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGSPRSEVLSGLGYRSGVDDLK 252
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+D++G+S+ +LRV R++R AE+KAA K+ P+++F P + +
Sbjct: 253 QLASILIQADKFGSSVAQALRVQSDSMRTKRRQIAEEKAAKTAVKMIFPLVLFIFPGIFV 312
Query: 313 VIIGPAILSIIDTM 326
V++GPA +++ M
Sbjct: 313 VLVGPAAINMYRQM 326
>gi|327543264|gb|EGF29697.1| flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
Length = 328
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 12/314 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGS------GELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
T ++IF+ + + L E R++ + + +R I + +K +
Sbjct: 19 LTTIAIFTSVTSFAWFVLSKVGGDDQAPAESRLERMKDAKRGIR--DIAADEKQRTKNEA 76
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
T + + + KL AGFR E + I +++LV + L+LG
Sbjct: 77 LTEALEKAATPIASSVSGNEEEMGKLREKLINAGFRRESAPVIFKLIQLVCTGVGLMLGG 136
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ D L + + ++L GF PS+ + + KR+ I PDALDL+++
Sbjct: 137 VTGAVLDGLTQG----MIIKLLLGMIGGFMIPSLILGFMASKRREKIFLGLPDALDLMVV 192
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ +DQALR+VAE++ + EE ++ +L R R+ +D ++
Sbjct: 193 CVEAGLGLDQALRKVAEEMQKSHKAIGEEFSISNHQLQLGSPRSEVLSGLGYRSGVDDLK 252
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+D++G+S+ +LRV R++R AE+KAA K+ P+++F P + +
Sbjct: 253 QLASILIQADKFGSSVAQALRVQSDSMRTKRRQIAEEKAAKTAVKMIFPLVLFIFPGIFV 312
Query: 313 VIIGPAILSIIDTM 326
V++GPA +++ M
Sbjct: 313 VLVGPAAINMYRQM 326
>gi|260776710|ref|ZP_05885605.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607933|gb|EEX34198.1| flp pilus assembly protein TadC [Vibrio coralliilyticus ATCC
BAA-450]
Length = 314
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 70/318 (22%), Positives = 137/318 (43%), Gaps = 17/318 (5%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ ++ +++ + + +G + ++ E LR+ + K S
Sbjct: 14 DEQTVFLSLILLATVLVVFTLSLLLVGPKS------PLKLKLEQLRQSTRSDKLKKSR-- 65
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R +L + + E+I KL AG+ +L + + + + L L
Sbjct: 66 ----RLDHTLESLAPVMKPSNSKESESIRQKLMHAGYHDANALTVFYAFKGMTVAVGLGL 121
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ F + + + G P++ + +LV+KRQS I+ PDALDL+
Sbjct: 122 AAGFYFLTPDMAMLNLVM-----VASVGGGLYVPNILLGHLVKKRQSRIRGGIPDALDLM 176
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++C ESG+ + ALRRVA+++ ++E+ +++ AF + RT +
Sbjct: 177 VVCTESGLGFNSALRRVADEVAISHPDFADELDTVCVKINAGVEMSDAFNDLIERTGLIE 236
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L + R G S+ +LR + R +R E E+ AA + K+ P+++F P
Sbjct: 237 IAGLVTMLAHASRIGGSLAQTLREYTDDYRDKRNQEVEEIAAKIPTKMIFPLLLFIWPCF 296
Query: 311 ILVIIGPAILSIIDTMKD 328
+V IGP++L T+ +
Sbjct: 297 FIVAIGPSMLLFTSTLGN 314
>gi|220922784|ref|YP_002498086.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947391|gb|ACL57783.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 319
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 129/322 (40%), Positives = 202/322 (62%), Gaps = 5/322 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M L D ++ AV+ + + ++ P L L +RMKSV ER+ +R ++
Sbjct: 1 MLDLLSSLID-PRFVGSMLAAVAAAATAFTLLQPFLEPDRLARRMKSVGEERDRIRLRER 59
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L + LR + ++ V++ L L ++ N+L AG+R + L R
Sbjct: 60 ERLNQRGN---LRQQPKAYMKRVVERFKLDNWLATDDAKNRLMMAGYRGPQAETAFLFFR 116
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LV+P++F ++ + ++F L + PF +R+ VI Y G AP +++ N KRQ+ IK
Sbjct: 117 LVMPVVFFVVSVFYLFVLHAL-DQPFSIRLMIVIAAVYAGIKAPEIFLKNQTTKRQAEIK 175
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ WPDALDL+LICVESG++I+ + RRV+ ++ QS+ L+EE+ LT AELS+L +R++A+E
Sbjct: 176 KHWPDALDLMLICVESGMAIEHSFRRVSAEMANQSIVLAEELALTTAELSYLTDRRIAYE 235
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N RT ++ V+ + AL+Q++RYGT +G +LRVL E+R +R+ EAEKKAA+L PKLTV
Sbjct: 236 NLAMRTGLESVKAVSTALVQAERYGTPVGQALRVLAQESRDQRMNEAEKKAAALPPKLTV 295
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
PMI+FFLPVL +VI+ PA++ I
Sbjct: 296 PMILFFLPVLFVVILTPAMVQI 317
>gi|94309584|ref|YP_582794.1| type II secretion system protein [Cupriavidus metallidurans CH34]
gi|93353436|gb|ABF07525.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Cupriavidus metallidurans CH34]
Length = 323
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 87/323 (26%), Positives = 156/323 (48%), Gaps = 12/323 (3%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F A +L V V+ F + V + + RM+ +A E ++
Sbjct: 4 IMQGFRADQLIVLALVFVAAFGTVLGV-LYVFSPDRMRGRMEQIASET--------GTVP 54
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ + V +L+L + + + AG+R + + + ++
Sbjct: 55 GNAGQQQAWVEKLVKWAQPVSRLSLPKEGWENSQLRVRFMNAGWRDASAAPLYFAAKTLL 114
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++G+I E V AV+ +G+ P++ +S V RQ ++ +
Sbjct: 115 AVALPMIGLIATSSVPAFQEQSTTFAVLAVL--AAIGYYIPNIVLSRKVTARQRTVFEEF 172
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PD +DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N
Sbjct: 173 PDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALSNLS 232
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT ++ V LIQ+DR+GTS+G+SLRVL R++R M AE++AA + KL P+I
Sbjct: 233 LRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLI 292
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 293 FTIFPTLLLVLLGPAFIQIYRVL 315
>gi|269966900|ref|ZP_06180973.1| putative tight adherence TadC-related transmembrane protein [Vibrio
alginolyticus 40B]
gi|269828567|gb|EEZ82828.1| putative tight adherence TadC-related transmembrane protein [Vibrio
alginolyticus 40B]
Length = 313
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 69/316 (21%), Positives = 133/316 (42%), Gaps = 18/316 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E + ++ ++ + +G KR + S
Sbjct: 16 ETLLMGLILITTVLVVMTLGSIIIGVNSPIKR-------------KLAELSGDKKEVSHH 62
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ S +L + + + + NKL AGF +L++ ++ V I+ +++
Sbjct: 63 NKKMSDTLESLAPLTSPTSEKERQTTRNKLMHAGFHESNALSMFYAIKSVTTILGVMVAA 122
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ F + + + ++G P + +V KRQ +I+ PD LDLL++
Sbjct: 123 LVYFSVPESKYLYTYMAL-----SVFIGLLFPDFILRRMVNKRQQAIRAGVPDMLDLLVV 177
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + ALRRVA+++ L++E+ ++ A RT ++ +
Sbjct: 178 CTESGLGFNAALRRVADELVISHPELADEIDTVCNKIKAGKPMPEALRELVLRTGLEELM 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G S+ +SLR + R +R AE+ AA + K+ PM++F P +
Sbjct: 238 GLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEIAAKIPVKMMFPMVLFIWPCFFI 297
Query: 313 VIIGPAILSIIDTMKD 328
V IGPA++S+ + +
Sbjct: 298 VAIGPALISLAEAFSN 313
>gi|168702877|ref|ZP_02735154.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
2246]
Length = 319
Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 86/313 (27%), Positives = 149/313 (47%), Gaps = 10/313 (3%)
Query: 17 AITTAVSIFS-LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
I V+I + + + + S + + E+R+ ER K + S
Sbjct: 14 PILVFVAIMAGTFWLLSLISSRNSQAEERL-----ERIGRPKSLVEIEMSQGESGNRFKG 68
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ N + + L +I +L AGFRSE + + +R ++ L++ ++
Sbjct: 69 IKDAFSNLGGVMEPRTELEKNSIRIQLANAGFRSENAAGVYQGIR----VVCLVVFLLPA 124
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ L + + + +G +GF P + + +L RQ I PDALDLL++CVE
Sbjct: 125 LFFFLLKDGFTLKSIEWTVALGGMGFYLPQMGLYHLRSTRQKEIFLTLPDALDLLVVCVE 184
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+ +D ALR+V +++ G + + EE L +L R+ + RT +D VR+
Sbjct: 185 SGLGLDAALRKVTDEMKGHAKTICEEFSLANLQLQMGRPRREVLHDLGVRTGVDDVRSLA 244
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQ+DR+G+SI +LRV R R AE+KAA +L P+++F P + +V++
Sbjct: 245 AILIQADRFGSSIAQALRVQSDSMRVRRRQIAEEKAAKTAVQLIFPLVLFIFPSIFVVLV 304
Query: 316 GPAILSIIDTMKD 328
GPA + I +
Sbjct: 305 GPAAIQIHKNLLK 317
>gi|254229337|ref|ZP_04922754.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262393424|ref|YP_003285278.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio sp. Ex25]
gi|151938145|gb|EDN56986.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262337018|gb|ACY50813.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio sp. Ex25]
Length = 313
Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 68/316 (21%), Positives = 133/316 (42%), Gaps = 18/316 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E + ++ ++ + +G KR + S
Sbjct: 16 ETLLMGLILITTVLVVMTLGSVIIGVNSPIKR-------------KLAELSGDKKEVSHH 62
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + +L + + + + NKL AGF +L++ ++ V I+ +++
Sbjct: 63 NKKMADTLESLAPLTSPTSEKERQTTRNKLMHAGFHESNALSMFYAIKSVTTILGVMVAA 122
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ F + + + ++G P + +V KRQ +I+ PD LDLL++
Sbjct: 123 LVYFSIPESKYLYTYMAL-----SVFIGLLIPDFILRRMVNKRQQAIRAGVPDMLDLLVV 177
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + ALRRVA+++ L++E+ ++ A RT ++ +
Sbjct: 178 CTESGLGFNAALRRVADELVISHPELADEIDTVCNKIKAGKPMPEALRELVLRTGLEELM 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G S+ +SLR + R +R AE+ AA + K+ PM++F P +
Sbjct: 238 GLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEIAAKIPVKMMFPMVLFIWPCFFI 297
Query: 313 VIIGPAILSIIDTMKD 328
V IGPA++S+ + +
Sbjct: 298 VAIGPALISLAEAFSN 313
>gi|78186531|ref|YP_374574.1| TadC protein [Chlorobium luteolum DSM 273]
gi|78166433|gb|ABB23531.1| TadC protein [Chlorobium luteolum DSM 273]
Length = 313
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/318 (22%), Positives = 151/318 (47%), Gaps = 10/318 (3%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
EL + + + +L+Y + + L KR+ +A + + ++
Sbjct: 5 LELLAIVLSGAAAVALVYVLYDWAAA-YALNKRISGIAGKDTARTPAVSAGTKAANS--- 60
Query: 72 LRTRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
++ N + +L+L + K AG RS+ + V+ ++ ++
Sbjct: 61 ---ATVGNVINILSRLSLPEEGWQSSAVQLKFLQAGIRSKNAPRYYFAVKTLLTVVLPAA 117
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++++ + P + V+ G+ P + + + Q+R ++ + PD +DL+
Sbjct: 118 LGLFLYFF--RPGVPLTQSLLLVLSTAAAGYYIPELALRFITQQRHERMRNSLPDMIDLM 175
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++C ESG+ ID A+ R++ ++ + L++E L++ E+ R A N RT +
Sbjct: 176 VVCTESGMGIDSAIARISREMARGNPDLAQEFYLSVLEIRAGATRIEALRNLALRTNLKD 235
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + +Q+D++GT + +SLRV RS R AE+ AA + K+T+P+++F P L
Sbjct: 236 MNDLVTMFVQADKFGTGMAESLRVQSDMLRSRRTQRAEEMAAKIPVKMTIPLVLFIFPTL 295
Query: 311 ILVIIGPAILSIIDTMKD 328
++V++GPAI+ I++
Sbjct: 296 LMVLLGPAIIQIMEVFSK 313
>gi|113866736|ref|YP_725225.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525512|emb|CAJ91857.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 324
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 157/322 (48%), Gaps = 10/322 (3%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F A + V V+ F ++ V + L R + +A + L
Sbjct: 4 IIQGFQADQFVVLALIFVAAFGTVFGV-LYVFSPNRLRGRAEQIAGQAGQLG-------A 55
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ L + + + + K + + AG+R+ + + + V+
Sbjct: 56 DPGKQNPLYEKLVQWAQPVSRLSLPKEGWESSQLRVRFMNAGWRNASAAPLYFAAKTVLA 115
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++G++ G L + + AV+ G +G+ P+V ++ V +RQ ++ +P
Sbjct: 116 IALPMIGLLAAAGQPGLQDRNIMFALLAVL--GAIGYYLPNVVLARKVAQRQRTVFEEFP 173
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D +DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N
Sbjct: 174 DVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALSNLSL 233
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT ++ V LIQ+DR+GTS+G+SLRVL R++R M AE++AA + KL P+I
Sbjct: 234 RTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLIF 293
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 294 TIFPSLLLVLLGPAFIQIYRVL 315
>gi|269926132|ref|YP_003322755.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
gi|269789792|gb|ACZ41933.1| von Willebrand factor type A; type II secretion system protein
[Thermobaculum terrenum ATCC BAA-798]
Length = 643
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 69/313 (22%), Positives = 140/313 (44%), Gaps = 18/313 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I A + L+Y +V+ +++R+K + E +++ +K ++ L
Sbjct: 346 LGIIAASGVLFLVYGLVLAQ-RPSPIQRRLKKLLHEEHQDTPPEVSVTKKKTSIVDLIKP 404
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ V + IV+KL AA + L + +++++
Sbjct: 405 LVPLVSVTVVRWIPGKWQRF--IVDKLIAAAYPHGIRLAHFITIQVLL------------ 450
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+L + +++ G P W+S + +R+ I PDALDLL I VE
Sbjct: 451 GLTGLVLGLLLTHNLILGLVLLAAGVYLPLFWLSREITQRRRRILLQMPDALDLLTISVE 510
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ D A+ E + ++ E L ++E+ +R+ A + R Q+D ++
Sbjct: 511 AGLGFDAAML---EIVQKWDNDIAREFALVLSEMKLGKSRRDALRSMAERVQLDEMKLLV 567
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+++Q+D G SIG +L + + R R AE+ K+ +PM++F P + +V++
Sbjct: 568 SSIVQADEIGASIGRTLSIQSEQMRLRRRQRAEELGHKAVIKIIIPMVLFIFPAVFVVLL 627
Query: 316 GPAILSIIDTMKD 328
GPAI +I++ + +
Sbjct: 628 GPAIPTILNALGN 640
>gi|77462448|ref|YP_351952.1| putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
gi|77386866|gb|ABA78051.1| Putative Flp pilus assembly protein TadC [Rhodobacter sphaeroides
2.4.1]
Length = 326
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 2/311 (0%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + ++I L+KR++ +R ++ + + R S+
Sbjct: 18 LGPLIAVGSLGILLIALTLPVMLKKRVEPF--DRIRAQRTAAVAAPVQKGQALRRASGSE 75
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F L K K+ AG+RS+ ++ + + + FL G+++
Sbjct: 76 KLDRFANLLEPKTAEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGFLAAGLLYAMVA 135
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
Q V IL G +G+ P WI Q+R I +PDALD++L+CVE+G
Sbjct: 136 SAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDALDMMLVCVEAGQ 195
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ++ RVA + L+EE + E+ R ++ R + V + L
Sbjct: 196 SLDQSILRVARESAAGYPALAEEFEIVAHEVKAGKERVAVLKDMSERVGIPDVSSFVTTL 255
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +P L+L++IGP+
Sbjct: 256 IQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTVPPLMLILIGPS 315
Query: 319 ILSIIDTMKDH 329
+ I +
Sbjct: 316 VYGIATQLGGQ 326
>gi|260771470|ref|ZP_05880395.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
gi|260613596|gb|EEX38790.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio furnissii CIP 102972]
Length = 318
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/315 (22%), Positives = 144/315 (45%), Gaps = 13/315 (4%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ ++ LI +V + +G+ +R ++ ++ +++ ++
Sbjct: 16 QTVFLGLILIATVLLIMSVALIVVGTKAPIQR--------QLEEIRKEGTVKTPGNLAKK 67
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + +L + ++ K I E++ ++L AG+ +LN ++++ + + +
Sbjct: 68 RDKIHNTLESIAPIMSPKNIKERESVRHQLMHAGYHDASALNTFYALKVLSTLAGVSISA 127
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ F Y + V+ +G P+ + +V+KR+S IK PDALDLL++
Sbjct: 128 LMYFLYPDMKNLK-----LIVVFSVAMGLFLPNFLLDRMVKKRKSRIKGGIPDALDLLVV 182
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + ALRRVA+++ L++E+ A++ A RT + +
Sbjct: 183 CTESGLGFNAALRRVADELMISHPDLADELDTVCAKIKAGVEMSEAMAQLVERTGLTEIS 242
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G SI +LR + R +R E E+ AA + K+ P+++F P +
Sbjct: 243 GLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEIEEIAAKIPTKMIFPLLLFIWPCFFI 302
Query: 313 VIIGPAILSIIDTMK 327
V +GP++LS+
Sbjct: 303 VAVGPSMLSLTAHFG 317
>gi|332560332|ref|ZP_08414654.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278044|gb|EGJ23359.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 326
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 85/311 (27%), Positives = 146/311 (46%), Gaps = 2/311 (0%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + ++I L+KR++ +R ++ + + R S+
Sbjct: 18 LGPLIAVGSLGILLIALTLPVMLKKRVEPF--DRIRAQRTAAVAAPVQKGQALRRASGSE 75
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F L K K+ AG+RS+ ++ + + + FL+ G+++
Sbjct: 76 KLDRFANLLEPKTAEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGFLVAGLLYAMVA 135
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
Q V IL G +G+ P WI Q+R I +PDALD++L+CVE+G
Sbjct: 136 SAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDALDMMLVCVEAGQ 195
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ++ RVA + L+EE + E+ R ++ R + V + L
Sbjct: 196 SLDQSILRVARESAAGYPALAEEFEMVAHEVKAGKERVAVLKDMSERVGIPDVSSFVTTL 255
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +P L+L++IGP+
Sbjct: 256 IQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTVPPLMLILIGPS 315
Query: 319 ILSIIDTMKDH 329
+ I +
Sbjct: 316 VYGIATQLGGQ 326
>gi|325108941|ref|YP_004270009.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324969209|gb|ADY59987.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 310
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 81/318 (25%), Positives = 154/318 (48%), Gaps = 11/318 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T++ + +I +LI+ V + V E +R + +
Sbjct: 1 MDFTQIL-PYASFGAIVALIWFVFSLLGNKQ------ERVEERLEDIRDPSRRFKESSAE 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ +K+ K L K L + + ++ AGF S + L ++ + I L
Sbjct: 54 RDGVGNMLNKAAPTLSKALKPKTELEESALKIRMANAGFNSPNAPQAYLAIKFISMIGGL 113
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++G + F + + + AV++ +GF P + ++ ++ KR+ +I PDALD
Sbjct: 114 LVGSSFGFLQYGMTQNGWT----AVVIGAGLGFYLPELILAYVISKRKQAIFLTMPDALD 169
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL++CVESG+ +DQ + RV ++ + + E L +L NR+ + RT +
Sbjct: 170 LLVVCVESGLGLDQGMNRVTAELSDTAPEICAEFSLCNFQLQMGRNRREVLHDLGVRTGV 229
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D ++ LIQ+DR+G+SI +LRV R +R+ AE+KA ++ P+++F P
Sbjct: 230 DDMKALAAILIQADRFGSSIAQALRVQSDSMRVKRMQIAEEKAQKTAVQMIFPLVLFIFP 289
Query: 309 VLILVIIGPAILSIIDTM 326
+ +V++GPA +S++D++
Sbjct: 290 GIFVVLVGPAAISMMDSL 307
>gi|258621455|ref|ZP_05716489.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|258627496|ref|ZP_05722277.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|262171240|ref|ZP_06038918.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
gi|258580302|gb|EEW05270.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|258586843|gb|EEW11558.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|261892316|gb|EEY38302.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
Length = 314
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 69/316 (21%), Positives = 137/316 (43%), Gaps = 18/316 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ VS L+ V + G ++K+++ + E + +
Sbjct: 16 QWVFLALILVSTSLLVVTVALVFSGNRAPMKKKLEQINKELS------------GNTLKK 63
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ +L + K +I +L AGF + +L++ ++ I+
Sbjct: 64 KNRKVDNTLESLAPISAGKESKERASIRTQLMHAGFHNRDALSLFYALKTSFAILGFSGA 123
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ F + + ++ G P++ + + V++RQ +I+ PDALDLL+
Sbjct: 124 ALVFFLLPDMDNGTLVM-----LVSVAGGLYLPNMGLHHFVKERQRTIRAGVPDALDLLV 178
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+C ESG+ + ALR+VA+++ ++E+ A++ AF+ RT + +
Sbjct: 179 VCTESGLGFNAALRKVADELAISHPEFADELDTVCAKIKAGVEMHTAFDELVARTGLTEI 238
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R L + + G S+ +LR + R +R E E+ AA + K+ P+++F P
Sbjct: 239 RGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIFPLLLFIWPCFF 298
Query: 312 LVIIGPAILSIIDTMK 327
+V IGPA+LS+ D +
Sbjct: 299 IVAIGPALLSLSDALG 314
>gi|315181052|gb|ADT87966.1| Flp pilus assembly protein TadC [Vibrio furnissii NCTC 11218]
Length = 318
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/315 (22%), Positives = 144/315 (45%), Gaps = 13/315 (4%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ ++ LI +V + +G+ +R ++ ++ +++ ++
Sbjct: 16 QTVFLGLILIATVLLIMSVALIVVGTKAPIQR--------QLEEIRKAGTVKTPGNLTKK 67
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + +L + ++ K I E++ ++L AG+ +LN ++++ + + +
Sbjct: 68 RDKIHNTLESIAPIMSPKNIKERESVRHQLMHAGYHDASALNTFYALKVLSTLAGVSISA 127
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ F Y + V+ +G P+ + +V+KR+S IK PDALDLL++
Sbjct: 128 LMYFLYPDMKNLK-----LIVVFSVAMGLFLPNFLLDRMVKKRKSRIKGGIPDALDLLVV 182
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + ALRRVA+++ L++E+ A++ A RT + +
Sbjct: 183 CTESGLGFNAALRRVADELMISHPDLADELDTVCAKIKAGVEMSEAMAQLVERTGLTEIS 242
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G SI +LR + R +R E E+ AA + K+ P+++F P +
Sbjct: 243 GLVSMLAHASRIGGSISQTLRDYTEDFRDKRNQEIEEIAAKIPTKMIFPLLLFIWPCFFI 302
Query: 313 VIIGPAILSIIDTMK 327
V +GP++LS+
Sbjct: 303 VAVGPSMLSLTAHFG 317
>gi|126461326|ref|YP_001042440.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221638311|ref|YP_002524573.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
gi|126102990|gb|ABN75668.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221159092|gb|ACM00072.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
Length = 326
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 2/311 (0%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + ++I L+KR++ +R ++ + + R S+
Sbjct: 18 LGPLIAVGSLGILLIALTLPVMLKKRVEPF--DRIRAQRTAAVAAPVQKGQALRRASGSE 75
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L F L K K+ AG+RS+ ++ + + + FL G+++
Sbjct: 76 KLDRFANLLEPKTAEEMSASRLKMMRAGYRSKGAVRAFHAAQFALGVGFLAAGLLYAMVA 135
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
Q V IL G +G+ P WI Q+R I +PDALD++L+CVE+G
Sbjct: 136 SAAAPLTMQQMVLYTILPGAIGYYLPVYWIKRRAQERYDQIVSGFPDALDMMLVCVEAGQ 195
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ++ RVA + L+EE + E+ R ++ R + V + L
Sbjct: 196 SLDQSILRVARESAAGYPALAEEFEMVAHEVKAGKERVAVLKDMSERVGIPDVSSFVTTL 255
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
IQS +GTSI ++LRV SE R +R+M AE+KA +L KLT+ ++ +P L+L++IGP+
Sbjct: 256 IQSATFGTSIAEALRVYSSEMRDKRVMRAEEKANTLPTKLTLGTMLLTVPPLMLILIGPS 315
Query: 319 ILSIIDTMKDH 329
+ I +
Sbjct: 316 VYGIATQLGGQ 326
>gi|78186665|ref|YP_374708.1| TadC protein [Chlorobium luteolum DSM 273]
gi|78166567|gb|ABB23665.1| TadC protein [Chlorobium luteolum DSM 273]
Length = 315
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 149/309 (48%), Gaps = 10/309 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+ ++ S++ A+ ++KR+ S+ E + + + +
Sbjct: 13 SGAAVASVVLAIYNW-GAGNAIKKRLISILHESRLPDEGARPKSAAARKITPV------- 64
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ K + + AG RS + ++ ++ ++ +L ++++
Sbjct: 65 IDVLSKLSIPEKGWQSSGVQLLFLQAGIRSINAPRYYFALKTLLSVVLPVLLGLFLYV-- 122
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ P + V+ G+ P + + + +KR ++ + PD +DL++IC ESG+
Sbjct: 123 RAPGVPPTRTMIFVVCTAAAGYYLPEMLLGFITRKRIGRLRDSLPDMIDLMVICTESGMG 182
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
ID A+ R+++++ G + L++E L+ E+ R A N R++++ + + L
Sbjct: 183 IDAAITRISKEMAGTNPDLAQEFYLSALEIRAGATRIEALRNLALRSRLEDLDDLVSVLA 242
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+DR+GTS+ +SLRV RS R AE+ AA + K+ +P+I+F P L++V++GPA+
Sbjct: 243 QADRFGTSLAESLRVQSDMMRSRRTQRAEELAAKIPVKMLLPLILFIFPTLMMVLLGPAV 302
Query: 320 LSIIDTMKD 328
+ ++ + +
Sbjct: 303 IQVMHALSN 311
>gi|323499916|ref|ZP_08104875.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
gi|323315157|gb|EGA68209.1| Flp pilus assembly protein TadC [Vibrio sinaloensis DSM 21326]
Length = 314
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 66/330 (20%), Positives = 136/330 (41%), Gaps = 21/330 (6%)
Query: 3 HYFFDLFDATEL----AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ 58
+ + + ++ V+ +++ + + V + +
Sbjct: 2 DFIYQILADLQIEEQTFFLGVILVATVLVMFTLFLVV------------VGTRAPMSVRL 49
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + R +L + L ++++ +L AG+ +L +
Sbjct: 50 EELKKTAPGEKLKKGRRLGNTLDSIAPTLTPSNSKENQSVRQQLMHAGYHDANALTVFYA 109
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
++ ++ + + F + A+I G P+V ++ +V+KRQS
Sbjct: 110 IKGAAILVGVGMAATLYFLVPDMSNLN-----LAMIFSVAFGLYIPNVGLNYVVKKRQSR 164
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ PDALDLL++C ESG+ ALRRVA+++ ++E+ ++ A
Sbjct: 165 IRGGVPDALDLLVVCTESGLGFSAALRRVADELMISHPDFADELDTVCVKIKAGVEMSDA 224
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
FE+ RT + + L + R G S+ +LR + R +R E E+ AA + K+
Sbjct: 225 FEDLVERTGIKELAGLVTMLSHASRIGGSLSQTLREYTEDFRDKRNQEIEEIAAKIPTKM 284
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
P+++F P +V IGP++L + T+ +
Sbjct: 285 IFPLLLFIWPCFFIVAIGPSMLFLTATLGN 314
>gi|28899184|ref|NP_798789.1| putative tight adherence TadC-like transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836802|ref|ZP_01989469.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|260361577|ref|ZP_05774604.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|260876734|ref|ZP_05889089.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|260898188|ref|ZP_05906684.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|260900405|ref|ZP_05908800.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|28807408|dbj|BAC60673.1| putative tight adherence TadC-related transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749948|gb|EDM60693.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|308089100|gb|EFO38795.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|308091488|gb|EFO41183.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|308109137|gb|EFO46677.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|308113997|gb|EFO51537.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|328474278|gb|EGF45083.1| putative tight adherence TadC-like transmembrane protein [Vibrio
parahaemolyticus 10329]
Length = 313
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 68/316 (21%), Positives = 132/316 (41%), Gaps = 18/316 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E + V+ ++ + +G KR +
Sbjct: 16 ETLLMGLILVTTVLVVMTLGSIIVGVNSPIKR-------------KLAELSGDKKPLPTH 62
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + +L + + + + NKL AGF SL++ ++ + I+ +++ +
Sbjct: 63 NKKMADTLESLAPLTSPTSEKERQTTRNKLMHAGFHQSNSLSMFYAIKSITTILGIMIAV 122
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + + ++G P + +V KRQ +I+ PD LDLL++
Sbjct: 123 LVYLTVPESKYLYTYMAL-----SAFIGLLIPDFMLRRMVNKRQQAIRAGVPDMLDLLVV 177
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + ALRRVA++I L++E+ ++ + RT ++ +
Sbjct: 178 CTESGLGFNAALRRVADEIVISHPELADEVDTVCNKIQAGKPMPESLRELVVRTGLEELM 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G S+ +SLR + R +R AE+ AA + K+ PM+IF P +
Sbjct: 238 GLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEIAAKIPVKMMFPMVIFIWPCFFI 297
Query: 313 VIIGPAILSIIDTMKD 328
V IGPA++S+ + +
Sbjct: 298 VAIGPALISLAEAFSN 313
>gi|262165914|ref|ZP_06033651.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
gi|262025630|gb|EEY44298.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
Length = 314
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/316 (21%), Positives = 138/316 (43%), Gaps = 18/316 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ VS L+ V + G ++K+++ + E + +
Sbjct: 16 QWVFLALILVSTSLLVVTVALVFSGNRAPMKKKLEQINKELS------------GNTLKK 63
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ +L + K +I +L AGF + +L++ ++ I+ +
Sbjct: 64 KNRKVDNTLESLAPISAGKESKERASIRTQLMHAGFHNRDALSLFYALKTSFAILGVSGA 123
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ F + + ++ G P++ + + V++RQ +I+ PDALDLL+
Sbjct: 124 ALVFFLLPDMDNGTLVM-----LVSVAGGLYLPNMGLHHFVKERQRTIRAGVPDALDLLV 178
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+C ESG+ + ALR+VA+++ ++E+ A++ AF+ RT + +
Sbjct: 179 VCTESGLGFNAALRKVADELTISHPEFADELDTVCAKIKAGVEMHTAFDELVARTGLTEI 238
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R L + + G S+ +LR + R +R E E+ AA + K+ P+++F P
Sbjct: 239 RGLVNMLSHASKIGGSLSQTLRDYTEDFRDKRNQEVEEIAAKIPTKMIFPLLLFIWPCFF 298
Query: 312 LVIIGPAILSIIDTMK 327
+V IGPA+LS+ D +
Sbjct: 299 IVAIGPALLSLSDALG 314
>gi|259418040|ref|ZP_05741959.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
gi|259346946|gb|EEW58760.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
Length = 323
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 76/322 (23%), Positives = 148/322 (45%), Gaps = 10/322 (3%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M +A+ + ++ V + L+K + R
Sbjct: 7 MQDLLIYYLGDFGPLLAVGFIGLVLIIVAVVFALNQPEDPLKK----------LQRDLAS 56
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
K + ++ L+ F L + + KLR AG++S+ ++ + ++
Sbjct: 57 NQSAKPQNERLRQASRNEQLQKFANFLEPQDAEELSAMQLKLRQAGYQSKDAVRLFHFLQ 116
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + L LG+ +++ + ++Y V+ G + P WI+ +++R+ +I
Sbjct: 117 FALGLSGLGLGLFFVYVMNADVDYTTNQMAMRVLGPGAACYYLPRYWITRRIEERKQAIT 176
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
RA+PDALD++L+CVE+G S+DQA+ RV +++ L+EE + E+ +
Sbjct: 177 RAFPDALDMMLVCVEAGQSLDQAIVRVGKELRASYPELAEEFEIVAYEMKAGKEKDKVLR 236
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ R + V + +IQS +GTSI D+LRV E R +R+M AE+ A L K+T+
Sbjct: 237 DMGTRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTL 296
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
+ +P L+ ++I P++ +
Sbjct: 297 ATMGLTVPPLLAILIAPSVQGL 318
>gi|73542334|ref|YP_296854.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72119747|gb|AAZ62010.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 323
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 86/322 (26%), Positives = 158/322 (49%), Gaps = 10/322 (3%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F + +L V V+ F +++ V+ + RM+ A + Q
Sbjct: 4 IIQGFQSDQLIVLTLIFVAAFGMVFGVLYAFSPN-----RMRGRAEQLAGQPGQASGRSG 58
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ A + ++ + K + + AG+RS + + + ++
Sbjct: 59 RQQAWIDKLVQWTQPVSRLS---LPKEGWEGSQLRVRFMNAGWRSTSAAPLYFTAKTILA 115
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++G+I + L + L + + + +G+ P+ +S+ V +RQ ++ +P
Sbjct: 116 IALPMIGLIAVSNQPALQQQHIMLALLTL--LAAIGYYLPNTVLSHKVAERQRAVFEEFP 173
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D +DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N
Sbjct: 174 DVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALSNLSL 233
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT ++ V LIQ+DR+GTS+GDSLRVL R++R M AE++AA + KL P+I
Sbjct: 234 RTGVEDVDKFASMLIQADRFGTSLGDSLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLIF 293
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 294 TIFPSLLLVLLGPAFIQIYRVL 315
>gi|91788419|ref|YP_549371.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697644|gb|ABE44473.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 314
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 12/318 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+LA V++F ++ + + + ++ R+ ++ +
Sbjct: 1 MTTLQLAFLGLIFVAVFGVVM-LALRLFAANPVQDRLDVAVGR---------STPIANDE 50
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R K K + + AGFR + I + +
Sbjct: 51 PNPWVARIIKLSGPLAKLSLPSDGWEMSALRTRFMNAGFRQPSAPAIYFAAKTTLAAGLP 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + +Y + ++ G+ P+V + NL+ +RQ I ++PDALD
Sbjct: 111 LMAFFILSTGGA--KYGTNTLLFWLLSAAAFGYYLPNVLLKNLISRRQREIFESFPDALD 168
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ +CVE+G+++D AL RVA +IG +S LSEE+ L EL +++ A N RT +
Sbjct: 169 LMTVCVEAGLAMDAALARVASEIGLKSAVLSEELQLVTLELRAGSSKEKALRNLALRTGV 228
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D V LIQS+R+GTSI DSLRV + R++R AE++AA + KL P+I F P
Sbjct: 229 DDVDALVAMLIQSERFGTSIADSLRVQSDQLRTKRRQRAEEQAAKIALKLLFPLIFFIFP 288
Query: 309 VLILVIIGPAILSIIDTM 326
L++V++GPA + I +
Sbjct: 289 SLLVVLMGPAFIQIYRVL 306
>gi|269960464|ref|ZP_06174836.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834541|gb|EEZ88628.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 314
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/315 (22%), Positives = 133/315 (42%), Gaps = 18/315 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E + ++ ++ + +LG KR +
Sbjct: 18 ETLLFALILITTILVVMTIGSIALGVNSPVKR-------------KLAELSGDKREKVSA 64
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
++ + +L + + + + NKL AGF SL++ ++ V II +++
Sbjct: 65 NSKVADTLESLAPLTSPTSEKERQTTRNKLMHAGFHQSNSLSMFYAIKSVTTIIGVMIAT 124
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + + +VG P + ++ KRQ +I+ PD LDLL++
Sbjct: 125 LVYLTIPESKYLYTFMAL-----AVFVGLVLPDFILRRMIDKRQRAIRAGVPDMLDLLVV 179
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + ALRRVA+++ L++E+ ++ A RT +D +
Sbjct: 180 CTESGLGFNAALRRVADELVISHPELADEVDTVCNKIQAGKPMPEALRELVYRTGLDELM 239
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G S+ +SLR + R +R AE+ AA + K+ PM++F P +
Sbjct: 240 GLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEMAAKIPVKMMFPMVLFIWPCFFI 299
Query: 313 VIIGPAILSIIDTMK 327
V IGPA++S+ + K
Sbjct: 300 VAIGPALISLAEAFK 314
>gi|303248308|ref|ZP_07334570.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
gi|302490333|gb|EFL50245.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
Length = 314
Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 88/314 (28%), Positives = 152/314 (48%), Gaps = 7/314 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +++ + S+ +YAV++ E EKR + +L ++ L
Sbjct: 4 ILISLLVSASVGFFVYAVMVL---RDEREKRREIAERAMAVLHPAGPEGGRRPGVIGWLA 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
F + + K L AGFR ++ I +++ ++ L++G+
Sbjct: 61 GLGRGLAARFGEAVKPKEAEELSKTRTTLIHAGFRQPGAVEIYWGLKVGAALVGLLVGVF 120
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
P Q ++ A + GF P V + + V+KRQ +I PDALDLL++C
Sbjct: 121 L----AASGRIPAQYKMFAALACVAGGFYLPGVVLDSRVKKRQKAILHGLPDALDLLVVC 176
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D A+ RV ++ + LS E+ L EL +R+ A +N NR ++ + +
Sbjct: 177 VEAGMGLDAAIYRVCLEMTHKEPILSSELRLLTLELRAGKSRREALKNLSNRVGLEDMGS 236
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
LIQ+D +GTSI +LRV R++R AE+ AA L KL P+++F P L++V
Sbjct: 237 LVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLAEELAAKLPVKLLFPLVLFIFPTLLIV 296
Query: 314 IIGPAILSIIDTMK 327
I+GPA +S++
Sbjct: 297 ILGPAGISLMRMFS 310
>gi|157961842|ref|YP_001501876.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846842|gb|ABV87341.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 320
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 83/329 (25%), Positives = 150/329 (45%), Gaps = 21/329 (6%)
Query: 4 YFFDLFDATE-LAVAITTAVSIFSLIYAVVIPSLGS---GELEKRMKSVAVEREILRKQQ 59
F FD + + AI + +I + A+ I L S + R+KS+ E+ Q
Sbjct: 7 LFGQFFDDPQHVEWAIYSISAIAGVTLAISISYLISGVYSPIRSRLKSLNGEKVTKNSQD 66
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+T + + + L AGF SE +L +
Sbjct: 67 VTGTLEHGIGEMAKKPFLNF--------------SNHETRRLLIHAGFHSENALAVFNAS 112
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL++ + I ++ + + + + I F APS+ + +L ++R +
Sbjct: 113 RLLLILFGFITSLLILNLFPNISGFWTFYIFCLFIGGA---FIAPSMVLQSLSKRRMRKL 169
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++ +VA
Sbjct: 170 RVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELELVCSKVRAGLTIKVAL 229
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F RT ++ ++ A+ QS R GT I ++LRV E R++RL AE++AA L K+
Sbjct: 230 QEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRNKRLQAAEEQAAKLAVKMI 289
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
PM+ P +V +GPA+L ++
Sbjct: 290 FPMMCCIWPSFFIVAVGPAVLKVMKVWGQ 318
>gi|153834029|ref|ZP_01986696.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
gi|148869584|gb|EDL68574.1| Flp pilus assembly protein TadC [Vibrio harveyi HY01]
Length = 315
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/316 (20%), Positives = 131/316 (41%), Gaps = 18/316 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E + ++ ++ V +G KR + +
Sbjct: 18 ETLLFALILITTVLVVMTVGSVVMGVNSPIKR-------------KLAELSGDKKEALPT 64
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + +L + + + + NKL AGF SL++ ++ + II +++
Sbjct: 65 NNKMTDTLESLAPLTSPTSEKERQTTRNKLMHAGFHQSNSLSMFYAIKSITTIIGVMMAT 124
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + + +G P + + +V KRQ +I+ PD LDLL++
Sbjct: 125 LIYLTIPESKYLYTYMAL-----AALIGLITPDMILRRMVNKRQKAIRAGIPDMLDLLVV 179
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C ESG+ + ALRRVA+++ L++E+ ++ A RT ++ +
Sbjct: 180 CTESGLGFNAALRRVADELVISHPELADEIDTVCNKIQAGKPMPEALRELVVRTGLEEIM 239
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R G S+ +SLR + R +R AE+ AA + K+ PM++F P +
Sbjct: 240 GLVSMLSHASRIGGSLVNSLREYTEDYRDKRQQAAEEVAAKIPVKMMFPMVLFIWPCFFI 299
Query: 313 VIIGPAILSIIDTMKD 328
V +GPA++++ +
Sbjct: 300 VAVGPALITLAEAFSK 315
>gi|218710398|ref|YP_002418019.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
gi|218323417|emb|CAV19594.1| Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
Length = 323
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 5/276 (1%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R L K+ + S ++R S +L + ++ +E KL AGF +
Sbjct: 47 RSPLDKKLKQISETGSPNNRKPYDFSNTLESLSPFISKGNKKDNETYSQKLMHAGFHEKN 106
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L++ ++++ ++ +I G + + + ++G P++ +S L
Sbjct: 107 ALSVFYALKVLSSLVGIIAGFMVYYISFGGSYNNLLIMTCV-----FLGTFTPNIILSKL 161
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++RQ I+ PDALDLL++C ESG+ + AL RVA ++ L++E+ A++
Sbjct: 162 QKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPELADELETVFAKIQA 221
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A F +RT + + L + R G S+ +LR + R +R AE+ A
Sbjct: 222 GVTMPDALRQFIDRTGLVELEGLVSLLSHASRMGGSLAQTLRDYTVDFRDKRQQAAEEIA 281
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A + K+ PM++F P +V +GP I+ +ID +
Sbjct: 282 AKIPTKMLFPMLLFIWPCFFIVALGPGIIIVIDALG 317
>gi|325109819|ref|YP_004270887.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970087|gb|ADY60865.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 333
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 61/311 (19%), Positives = 138/311 (44%), Gaps = 6/311 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + V + ++ V + + R+ S E E + T++++ R
Sbjct: 12 IPLLPFVVVIAVTGLVYSVTALMTGRDSRIDSRLEELEAM--SGSTTVERAGWKRRFLAP 69
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + ++ + + +L AG+ + + R + ++ + + ++
Sbjct: 70 LQELMPQSLVRVATETTEGGSRVQKRLMQAGYYGHDYVPLFAAARCGLALLPVAVAVVCY 129
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ +G P +W+ V++RQ++ +A PD DLL+ C+
Sbjct: 130 ----AKGWGTTSTIAMWTAVGSGIGVVLPGLWLDRAVRRRQATFMKAIPDLFDLLVTCLS 185
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG++I+ +++RVAE++ L+ E+ E+ + A ++F R ++ +R+
Sbjct: 186 SGLTIEASIKRVAEELRLAHPDLANELARVQNEIHLGISVVDALKHFAERCNLNPIRSLA 245
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
Q+ +YGT ++LRV + R++R AE++A K+ P ++ P + +V+
Sbjct: 246 MMCEQTRQYGTRAIEALRVHANMMRTQREQRAEERARKAAVKILAPTVLLIFPSVFVVVA 305
Query: 316 GPAILSIIDTM 326
GPA + I +TM
Sbjct: 306 GPAAIQIAETM 316
>gi|99082191|ref|YP_614345.1| type II secretion system protein [Ruegeria sp. TM1040]
gi|99038471|gb|ABF65083.1| hypothetical protein TM1040_2351 [Ruegeria sp. TM1040]
Length = 323
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/320 (22%), Positives = 147/320 (45%), Gaps = 10/320 (3%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
+A+ + + ++ A + + K+++ R
Sbjct: 9 DLLIQHLGEFGPLMAVG-FLGLLLVVVAAFLLFNQPEDPLKKLQ---------RNLSADQ 58
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
K + ++ L+ F L + + KLR AG++S+ ++ + ++
Sbjct: 59 NAKPQNERLRQASRNEQLQKFANFLEPQDAEELSAMQLKLRQAGYQSKDAVRLFHFLQFA 118
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L G+ ++ + +EY V+ G + P WI+ +++R+ +I RA
Sbjct: 119 LGLAGLGFGLFLVYVLNADVEYTTNQLAMRVLGPGAAAYYLPRYWITRRIEERKQAITRA 178
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PDALD++L+CVE+G S+DQ++ RV +++ L+EE + E+ + +
Sbjct: 179 FPDALDMMLVCVEAGQSLDQSIVRVGKELQASYPELAEEFEIVAHEMKAGKEKDKVLRDM 238
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + V + +IQS +GTSI D+LRV E R +R+M AE+ A L K+T+
Sbjct: 239 ATRCGVQDVASFVTVMIQSAAFGTSIADALRVYAGEMRDKRVMRAEEAANKLPTKMTLAT 298
Query: 303 IIFFLPVLILVIIGPAILSI 322
+ +P L+ ++I P++ +
Sbjct: 299 MGLTVPPLLAILIAPSVQGL 318
>gi|167624197|ref|YP_001674491.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354219|gb|ABZ76832.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 320
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 81/329 (24%), Positives = 147/329 (44%), Gaps = 21/329 (6%)
Query: 4 YFFDLFDATE-LAVAITTAVSIFSLIYAVVIPSLGS---GELEKRMKSVAVEREILRKQQ 59
F FD + + AI + +I + A+ I L S + KR+KS+
Sbjct: 7 LFGQFFDDPQHVEWAIYSVAAIAGVTLAISISYLISGVYSPIRKRLKSLNAAEGTKVTHD 66
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+T + + + L AGF SE +L +
Sbjct: 67 VTGTLEHGMGEMAKKPFLNF--------------SNHETRRLLIHAGFHSENALAVFNAS 112
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL++ ++ ++ ++ + E + L F PS+ + +L +R +
Sbjct: 113 RLLLILLGFVISLV---ILNLFPEISGIWTIYIFCLFIGGAFIVPSMVLQSLANRRMRQL 169
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++ +VA
Sbjct: 170 RVGFPDALDLLVVCCEAGLGLMAAMQRVARELAFSHPSLASELDLVCSKVRAGLTIKVAL 229
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F +RT ++ ++ A+ QS R GT I ++LRV E R +RL AE++AA L K+
Sbjct: 230 QEFTDRTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAAEEQAAKLAVKMI 289
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
PM+ P +V +GPA+L ++
Sbjct: 290 FPMMCCIWPSFFIVAVGPAVLKVMKVWGQ 318
>gi|299067812|emb|CBJ39023.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CMR15]
Length = 315
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 83/319 (26%), Positives = 150/319 (47%), Gaps = 9/319 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + T +F + A + L L++R+ + E + + D
Sbjct: 1 MHTVHIVLLAGTFAIVFGAVLA-AMTLLRPSTLDRRLGQIDRELPRTQPRD------DGH 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + + K K ++ + AG+R+ ++ + ++ ++
Sbjct: 54 DRAWLRRLEQLAKPLAKASLPKEGWEGSSLRQRFVHAGWRAPEAIAVYFGIKTILTFGLP 113
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L +W ++ + + VGF P+V +S ++ RQ I ++PD+LD
Sbjct: 114 LL--LWAGLVGRINADQQSQFMSLLFGAAVVGFYLPNVLLSLKIKYRQREIFESFPDSLD 171
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+S+D A+ RV +++ ++EE L EL R+ A N RT +
Sbjct: 172 LIMVCVEAGLSLDAAILRVVDEMRTARPVMAEEYELLTLELRAGLPREKALRNLAARTGV 231
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D V LIQ+DR+GTS+ DSLRV R++R M AE++AA +G K+ P+I P
Sbjct: 232 DDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERAAKIGTKVLFPLIFCIFP 291
Query: 309 VLILVIIGPAILSIIDTMK 327
L +V++GPA L +I +
Sbjct: 292 SLYVVLLGPAALQMIAALG 310
>gi|120602154|ref|YP_966554.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|120562383|gb|ABM28127.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|311234268|gb|ADP87122.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
RCH1]
Length = 323
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 3/300 (1%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
+ V GS RM+S R + + S +R + +++
Sbjct: 24 FFGVQGMRGSRRRIDRMQSRVARHL-DRNAPTAAASATTLSDDMRRGINAMAERLGQRVI 82
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+ L AG+R+ + + V+ + + L++G+ + P +
Sbjct: 83 NEGDTELTEAGMALARAGYRNRTAPRVFWGVKAGLTVAGLLMGLTVRLLLGD--DVPAGM 140
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
I G P++W+S+ +++R+ I A PDALDLL++CVE+G+ +DQAL RVA
Sbjct: 141 VALLFIGPAVTGLYLPNIWLSSRIKERRQEIINALPDALDLLVVCVEAGMGLDQALARVA 200
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ S L+EE+ L+I EL +R +N R ++ V + +IQ+D +GTSI
Sbjct: 201 KELQSTSPVLAEELQLSILELRAGKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSI 260
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+LRV R+ R AE+ AA + KL P++ LP L + I+GPA + ++
Sbjct: 261 ASTLRVYSDTMRTTRFQRAEEIAAKMPVKLLFPLVFCILPALFVTIMGPAFIKLMQVFAQ 320
>gi|17545369|ref|NP_518771.1| tight adherence TadC-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427661|emb|CAD14180.1| probable pilus assembly tadc transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 315
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 84/319 (26%), Positives = 150/319 (47%), Gaps = 9/319 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + T +F + A + L L++R+ + E + + D
Sbjct: 1 MHTVHIVLLAGTFAIVFGAVLA-ALTLLRPSTLDRRLGQIDRELPRSQPRD------DGR 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + + K K ++ + AG+R+ ++ + ++ ++
Sbjct: 54 DRAWLRRLEQLAKPLAKASLPKEGWEGSSLRQRFVHAGWRAPEAIAVYFGIKTILTFGLP 113
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L +W + + + VGF P+V +S ++ RQ I ++PD+LD
Sbjct: 114 LL--LWAGLVGRFNADQQSQFMSLLFGAAVVGFYLPNVLLSLKIKYRQREIFESFPDSLD 171
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+S+D A+ RV +D+ ++EE L EL +R+ A N RT +
Sbjct: 172 LIMVCVEAGLSLDAAILRVVDDMRTARPVMAEEYELLTLELRAGLSREKALRNLAARTGV 231
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D V LIQ+DR+GTS+ DSLRV R++R M AE++AA +G K+ P+I P
Sbjct: 232 DDVSMLVAMLIQADRFGTSVADSLRVHSDMLRTKRHMLAEERAAKIGTKVLFPLIFCIFP 291
Query: 309 VLILVIIGPAILSIIDTMK 327
L +V++GPA L +I +
Sbjct: 292 SLYVVLLGPAALQMIAALG 310
>gi|194288828|ref|YP_002004735.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222663|emb|CAQ68666.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 324
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 10/324 (3%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS 62
F F ++ V V+ F ++ V+ + E + Q
Sbjct: 2 QEIFQGFQGDQVIVLALIFVAAFGTVFGVLYALAPH--------RLRGRAEQIAGQAGPF 53
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
L + K + + K + + + AG+RS + + + V
Sbjct: 54 EADQGRQQALIEKLVKWAQPISRLSLPKEGWENSQLRVRFMNAGWRSASAAPLYFGAKTV 113
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + +LG++ + + A++ G G+ P+V ++ V +RQ ++
Sbjct: 114 LAVALPMLGLLAVSSQPGQQSQQLMFALLALL--GATGYYLPNVVLARKVSQRQRTVFEE 171
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+PD +DLL +CVE+G+ +D AL RVA+++ + L++E+ L + EL +++ A N
Sbjct: 172 FPDVIDLLTVCVEAGLGLDAALMRVADELALRCPVLADELQLMLLELRSGFSKEKALTNL 231
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT ++ V LIQ+DR+GTS+G+SLRVL R++R M AE++AA + KL P+
Sbjct: 232 SLRTGVEDVDKFASMLIQADRFGTSLGESLRVLSDMLRTKRRMRAEEQAAKIALKLLFPL 291
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
I P L+LV++GPA + I +
Sbjct: 292 IFTIFPSLLLVLLGPAFIQIYRVL 315
>gi|212635449|ref|YP_002311973.1| Tight adherence TadC-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556933|gb|ACJ29387.1| Tight adherence TadC-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 321
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 84/329 (25%), Positives = 152/329 (46%), Gaps = 17/329 (5%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQ 59
+ FFD E A+ ++ +L A+ G L KR+K++
Sbjct: 7 LLGQFFDNPTHVEWAIYAVAGIAGVTLAIAISYLISGFYSPLRKRLKTLNT-------GD 59
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ D+ S L + + + + L AGF SE SL I +
Sbjct: 60 SGAPSGDAVSETLEHGMVEMAKKPFLNFS------NHETRRLLIHAGFHSENSLAIFNAI 113
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL++ ++ ++ ++ + + K+ I F PS+ + +L ++R +
Sbjct: 114 RLLLLLLGAVISVLILNFFPKIAGIWIIYIFCMFIGGA---FILPSMVLQSLAKRRMRLL 170
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +PDALDLL++C E+G+ + AL+RVA+++ L+ E+ L +++ +VA
Sbjct: 171 RVGFPDALDLLVVCCEAGLGLMAALQRVAKELAFSHPSLASELELVCSKVRAGLTIKVAL 230
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F RT ++ ++ A+ QS R GT I ++LRV E R +RL AE++AA L K+
Sbjct: 231 QEFTERTGLEDIKGLNSAISQSMRLGTGIAETLRVFSDEYRDKRLQAAEEQAAKLAVKMI 290
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
PM+ P +V +GPA+L ++
Sbjct: 291 FPMMCCIWPSFFIVAVGPAVLKVMKVWGQ 319
>gi|116748937|ref|YP_845624.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698001|gb|ABK17189.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 319
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 82/319 (25%), Positives = 144/319 (45%), Gaps = 3/319 (0%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ L VA V L+ +V + ++ M+ + + L +
Sbjct: 4 ENLALIVAAMVFVIACLLVLSVALYWRHRETRKRIMEKIRQDGLEL-SGVEAEPAVQEIT 62
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R K++ + + AG R E + + + + + +
Sbjct: 63 GAKRGPIVSFFDRVGKRMKTEKPSELRAQQLRFLRAGIRMENAPAVFMGAKCLGGLGLAF 122
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
++ + L+ +L A VGF P +W+ +R+ ++R PDALDL
Sbjct: 123 GFLLLKTVFFSLM--SARLTAVAACATALVGFYLPDLWLRLKTSRRRKQLRRGLPDALDL 180
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+++CVE+G+ ID A RV+E++ + P+S+E+ EL R+ A N RT ++
Sbjct: 181 MVVCVEAGMGIDSATYRVSEEMKLTNAPMSDELKYLNLELRAGKARRDALRNLALRTDLE 240
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V + T LIQ+D++GTS+ +LRV R++R AE+ AA L KL +P+I+F P
Sbjct: 241 DVNSLTTLLIQTDKFGTSVAQALRVHSDSFRTKRHQMAEELAAKLPVKLVLPLILFIFPS 300
Query: 310 LILVIIGPAILSIIDTMKD 328
L +VI+GPA++ T
Sbjct: 301 LFVVIMGPAMIRAFRTFMK 319
>gi|328953758|ref|YP_004371092.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328454082|gb|AEB09911.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 302
Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats.
Identities = 76/312 (24%), Positives = 141/312 (45%), Gaps = 13/312 (4%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
I + + L + ++ + + + + + + S+
Sbjct: 3 LILFGIMVAGLFFFLIAYLIQKTTPSQGRRLFSSNSAAIEVNKRRHNIISEQFSKRLNSI 62
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++ V + + KL AG + + L +L P+ +I+G
Sbjct: 63 MGFAKDPV---------KAKELKKKLMLAGCYGSRAFSRFLFFKLTSPLAAIIIG----I 109
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L ++ + L+ GF P++ +++ + RQ I PDALDLL++CVE+
Sbjct: 110 PLSLNLNVGLIMKPVFLYLLLAFGFYLPNLVLNHKISARQKKISEGLPDALDLLVVCVEA 169
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ ++ A++RVA+D+ + LS E + E+ +R+ A N RT ++ +
Sbjct: 170 GLGLNAAMKRVADDLKMNNPVLSLEFNMLNLEILAGLDREQALRNLAERTGVEELSTLCA 229
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
LIQ+DR+GTSI +LRV R+ R E+ AA KL P+I+F P L++VI+G
Sbjct: 230 ILIQADRFGTSIAQALRVQSDTMRTNRRQRLEELAARTPVKLVFPLILFIFPALVVVILG 289
Query: 317 PAILSIIDTMKD 328
PA++ + ++M
Sbjct: 290 PAVIQVAESMAK 301
>gi|54302281|ref|YP_132274.1| tight adherence TadC-like transmembrane protein [Photobacterium
profundum SS9]
gi|46915703|emb|CAG22474.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum SS9]
Length = 322
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/314 (22%), Positives = 138/314 (43%), Gaps = 15/314 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+S+ + + + L+KR+ S++ + K+ S D
Sbjct: 21 IFLGLAFISVVTFTLCLALLITNLLNPLKKRLHSLSHISKDTTKKSAESSALD------- 73
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+L + K ++ ++ L AG+ + +L +++++ I +I
Sbjct: 74 ----NTLESMDKYISPSSMKERNQTKTLLMHAGYEQKQALTNFYAIKIILVIFAFFGVLI 129
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L E Q + +L + P+ + +KR ++ A+PDALDLL++
Sbjct: 130 ---SSKFLPELSTQKILFYTLLAMAIATFLPNFVLQKKAKKRIQTLSNAFPDALDLLVVT 186
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G+ AL RVA +I S LS E+ + ++ +A F RT + ++
Sbjct: 187 TEAGLGFLAALNRVANEIDALSPELSSELQIVCRKVRLGVPLPIALSQFIERTGLLELQG 246
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ QS + G+S+GD+LR E R R+ +AE++AA +G K+ P++ P V
Sbjct: 247 LVSIISQSVKLGSSMGDTLREYAIEFRDRRMQKAEEEAAKIGTKMIFPLVTCIWPGFFTV 306
Query: 314 IIGPAILSIIDTMK 327
IGPAI+++++
Sbjct: 307 AIGPAIIAVLEAFG 320
>gi|218887822|ref|YP_002437143.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758776|gb|ACL09675.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 326
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 7/325 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ---- 64
E + A+ + V G +R++ +
Sbjct: 1 MPFDETMIPFLAALLASGAVLLVAQALRGMFGNRQRVQRMHGRLTRHAAGARAVAVAAPA 60
Query: 65 -KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+S S L+ + +++ L AG+R+ + + V+ +
Sbjct: 61 LPESPLSSLKAALNAVAERVGQRVVKDDGEEVNEAGLALVRAGYRNRRAPLVFWGVKAGL 120
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L+LG++ + P + I VG AP+VW+S ++ R+ I +
Sbjct: 121 TLCGLLLGLVVRLLAGN--DIPLGMVALLFICPAVVGLYAPNVWLSRRIKARRLDIINSL 178
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLL++CVE+G+ +DQA RVA ++ + L+EE+ L I EL +R A +N
Sbjct: 179 PDALDLLVVCVEAGMGLDQAFSRVAREMAATNPVLAEELNLVILELRAGKSRAEALKNLA 238
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R ++ V + ++Q+D +GTSI +LRV R+ R AE+ AA + KL P++
Sbjct: 239 ARVALEDVNSLVTLIVQADAFGTSISSTLRVYSDTMRTTRFQRAEEIAAKMPVKLLFPLV 298
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
LP L + I+GPA + ++
Sbjct: 299 FCILPALFVTIMGPAFIKLMQVFAQ 323
>gi|84387237|ref|ZP_00990258.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
gi|84377884|gb|EAP94746.1| Flp pilus assembly protein TadC [Vibrio splendidus 12B01]
Length = 323
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 5/275 (1%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R L K+ + + + R S +L + ++ +E KL AGF +
Sbjct: 47 RSPLDKKLRQISEDGAPTGRKPYDFSNTLESLSPFISKGNKKDNETYSEKLMHAGFHEKS 106
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
SL++ ++++ +I ++ + + + ++G P++ +S L
Sbjct: 107 SLSVFYALKVLSSLIGIVAAFMVYYIALGGDYNNLLIMTCV-----FLGTFTPNIILSKL 161
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++RQ I+ PDALDLL++C ESG+ + AL RVA ++ ++E+ A++
Sbjct: 162 QKERQKKIRNGVPDALDLLVVCTESGLGFNAALGRVASELYVSQPEFADELETVFAKIQA 221
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A RT + + L + R G S+ +LR + R +R AE+ A
Sbjct: 222 GVTMPDALRQLIERTGLVELEGLVSLLSHASRMGGSLAQTLRDYTEDFRDKRQQAAEEIA 281
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + K+ PM+IF P +V +GP +L ++D +
Sbjct: 282 AKIPTKMLFPMLIFIWPCFFIVALGPGLLIVMDAL 316
>gi|323491540|ref|ZP_08096719.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
gi|323314116|gb|EGA67201.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
Length = 313
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 75/325 (23%), Positives = 142/325 (43%), Gaps = 19/325 (5%)
Query: 5 FFDLFD-ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
FF F+ + ++ +I+ + + +GS + ++ +
Sbjct: 7 FFASFNLDEQTVFLGLILLATVLIIFTLSLLLVGS-------------KSPIKAKLSQLK 53
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ R +L + + E+I KL AG+ +L + ++ +
Sbjct: 54 SANGTEKHKTKRLENTLESLAPAMQPSNSKESESIREKLMHAGYLDANALTVFYALKGMS 113
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+I L++ + F + +R A+++ VG P+V + +V KRQS I+
Sbjct: 114 TVIGLLMAAGFFFFAPDMS-----MRNLAMVVSVAVGLYGPNVVLGFMVDKRQSKIRGGI 168
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLL++C ESG+ + ALRRVA+++ ++E+ +++ AF +
Sbjct: 169 PDALDLLVVCTESGLGFNAALRRVADELTISHPEFADELDTVCVKVNAGVEMSDAFNDLI 228
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + + L + + G S+ +LR + R +R E E+ AA + K+ P++
Sbjct: 229 QRTGLKEIAGLVTMLAHASKIGGSLSQTLREYTEDYRDKRNQEIEEVAAKIPTKMIFPLL 288
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
IF P +V IGP++L TM
Sbjct: 289 IFIWPCFFIVAIGPSMLLFTATMGK 313
>gi|187927682|ref|YP_001898169.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724572|gb|ACD25737.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 320
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 77/321 (23%), Positives = 152/321 (47%), Gaps = 10/321 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + V+ F + + R++ + + + +
Sbjct: 1 MQALYSNQYFILVLIFVAAFGGALGL-LHLFSPNRARGRIQQIGGQT-------VGADLA 52
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ + + + K + + + AG+R ++ ++ V+ V+ I
Sbjct: 53 GGPDHAWVEKLATWAKPVSQLSLPKDGWENSQLRIRFMNAGWRQPWAPSLYFAVKTVLAI 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ + + + L V ++ +G+ P+ ++ V+ RQ + +PD
Sbjct: 113 LLPLAALLVLSSRPEHHDQEVVLAVLGLL--SAIGYYLPNAALARKVEHRQRDVFEEFPD 170
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LDLL +CVE+G+ +D A+ RV++++ + ++EEM LT+ EL ++ A N R
Sbjct: 171 MLDLLTVCVEAGLGLDAAMMRVSDELALRCPVMAEEMELTLLELRSGFPKEKALTNLALR 230
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ V LIQ+DR+GTS+ DSLRVL R++R M AE++AA + KL P+I F
Sbjct: 231 TGVEDVDRFASMLIQADRFGTSLADSLRVLSDMLRTKRRMRAEEQAAKIALKLLFPLIFF 290
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L+LV++GPA + I +
Sbjct: 291 IFPTLLLVLLGPAFIQIYRVL 311
>gi|225872758|ref|YP_002754215.1| type II secretion system protein [Acidobacterium capsulatum ATCC
51196]
gi|225793390|gb|ACO33480.1| type II secretion system protein [Acidobacterium capsulatum ATCC
51196]
Length = 299
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/299 (23%), Positives = 138/299 (46%), Gaps = 11/299 (3%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
+ ++ S L + + R ++T + S + L
Sbjct: 7 LALAIMLFSVSALLVNLLLAAPERTAARRIAEVTQHEVVRGPSPTKVLGKSMLHAMKGLR 66
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
++ ++ + ++ AAG R + + L RL+ P++ +++G +
Sbjct: 67 VTLGMVENQKLRDRFMAAGMRKPEHMELYLGARLLAPLLGVLIGTFF-----------PS 115
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ + G+ P W+ V+ R+ I R+ PDA+DLL+ICV++G+ +DQA+ RV
Sbjct: 116 NTFLWAVALAGAGYLGPDFWLERKVKGRRHRISRSMPDAIDLLVICVDAGLGLDQAMLRV 175
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+++ ++EE L E R A++ F RT++ ++N L+Q++R+GT
Sbjct: 176 GQELAVSHPEINEEFLQINREQRAGRPRVDAWKGFAERTRLPEIQNFVSMLVQTERFGTP 235
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
I +L R +R AE+KAA K+ P+++F P + +V++GPA ++I +
Sbjct: 236 ITRALNTFSDSMRLKRKQIAEEKAAKTTVKMLFPLVLFIFPCIFIVLLGPAFITISKGL 294
>gi|46580529|ref|YP_011337.1| hypothetical protein DVU2124 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449948|gb|AAS96597.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
Length = 284
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/277 (27%), Positives = 135/277 (48%), Gaps = 2/277 (0%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R + R + + S +R + +++ + L AG+R+
Sbjct: 7 RHLDRNAPTAAASATTLSDDMRRGINAMAERLGQRVINEGDTELTEAGMALARAGYRNRT 66
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ + V+ + + L++G+ + P + I G P++W+S+
Sbjct: 67 APRVFWGVKAGLTVAGLLMGLTVRLLLGD--DVPAGMVALLFIGPAVTGLYLPNIWLSSR 124
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+++R+ I A PDALDLL++CVE+G+ +DQAL RVA+++ S L+EE+ L+I EL
Sbjct: 125 IKERRQEIINALPDALDLLVVCVEAGMGLDQALARVAKELQSTSPVLAEELQLSILELRA 184
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+R +N R ++ V + +IQ+D +GTSI +LRV R+ R AE+ A
Sbjct: 185 GKSRADTLKNLAARVAIEDVNSLVTLIIQADAFGTSIASTLRVYSDTMRTTRFQRAEEIA 244
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
A + KL P++ LP L + I+GPA + ++
Sbjct: 245 AKMPVKLLFPLVFCILPALFVTIMGPAFIKLMQVFAQ 281
>gi|134299964|ref|YP_001113460.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052664|gb|ABO50635.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 310
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/317 (19%), Positives = 137/317 (43%), Gaps = 11/317 (3%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+L V + F+ + + ++ +RM V + +++ R
Sbjct: 5 LQLIVGMIFFAVTFATLVLYRLVFGERIQVAQRMDQVVGSPAPIPVRELELSVP--LYQR 62
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
++ ++ + ++ + K+ AG +VV+ + +
Sbjct: 63 AIHPALSTMARWLTRFIPS--AREKELQKKIIYAGNPGHLDAKEWVVVKYLGAVGLG--- 117
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + + + +G+ P +++++ ++ R++ ++++ PDALDLL
Sbjct: 118 -FFFWSWAGMAGKALPQCLLLGATGVPLGWLLPDLYLNSRIRNRKTQVEKSLPDALDLLT 176
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ VE+G+ D AL +VAE G +++E +L + E R+ A + R +D +
Sbjct: 177 VSVEAGLGFDGALMKVAEKTKGI---MADEFILMLQECHMGKPRREALRDMATRLDVDDL 233
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ ++I +D G SIG+ LR + R +R + E+ A K+ PM+ F P +
Sbjct: 234 SSFCGSIILADTLGISIGNVLRTQSQQMRQKRRQKTEELAMKAPIKMLFPMVFFIFPAIF 293
Query: 312 LVIIGPAILSIIDTMKD 328
++++GPA L I+ +
Sbjct: 294 VILLGPAALQIMKAFAN 310
>gi|157375501|ref|YP_001474101.1| putative putative tight adherence TadC-like transmembrane protein
[Shewanella sediminis HAW-EB3]
gi|157317875|gb|ABV36973.1| conserved hypothetical putative tight adherence TadC-related
transmembrane protein [Shewanella sediminis HAW-EB3]
Length = 321
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 87/329 (26%), Positives = 155/329 (47%), Gaps = 20/329 (6%)
Query: 4 YFFDLFDAT-ELAVAITTAVSIFSLIYAVVIPSLGS---GELEKRMKSVAVEREILRKQQ 59
F LFD ++ AI I +++A+ + L S L +R+KS+ E +I Q
Sbjct: 7 LFGSLFDDPEQIKWAIFAVAGIAGVMFALSLAFLISGIYSPLRQRLKSLNKEEQIKTVQT 66
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + + + ++ N + L AG SE ++ I +
Sbjct: 67 DVNATLEHGIGSMVEKSPLNMSN-------------DETRRLLIHAGLHSENAMAIFSSI 113
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R+ I+ LI + + + V V L+ F PS+ + + +R +
Sbjct: 114 RI---ILLLIGAGSSVLVLSLYPDLSTMMSVYIVALLVGGAFLLPSLVLQKIASRRMRML 170
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +PDALDLL++C E+G+ + A++RVA ++ L+ E+ L +++ +VA
Sbjct: 171 RTGFPDALDLLVVCCEAGLGLMAAMQRVARELALSHPTLASELDLVCSKVRAGLTVKVAL 230
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F +RT ++ ++ A+ QS R GT I ++LRV E R++RL EAE++AA L K+
Sbjct: 231 NEFTDRTGLEDIKGLNSAISQSIRLGTGIAETLRVFSDEYRNKRLQEAEEQAAKLAVKMI 290
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
PM++ P +V IGPA+L ++
Sbjct: 291 FPMMLCIWPSFFIVAIGPAVLKVMKVWGQ 319
>gi|149175288|ref|ZP_01853910.1| probable secretion system protein TadC [Planctomyces maris DSM
8797]
gi|148845897|gb|EDL60238.1| probable secretion system protein TadC [Planctomyces maris DSM
8797]
Length = 308
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 77/318 (24%), Positives = 152/318 (47%), Gaps = 13/318 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D +L + I +I + + R+ + + S
Sbjct: 1 MDFVQLLPWAIFGMVIVGVIALINKLNFDHSRANARLDELRNPHLRNNPEDANSAS---- 56
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ K+ K L K+ L + + +L AG+ SE + +I L +++ + ++ +
Sbjct: 57 -----SLFEKAAPALSKALTPKSELEENQLKVRLANAGYNSEAAPSIFLSLKVALGLLGV 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG + F + + + +++ G +GF P + + L++ R I + PDALD
Sbjct: 112 VLGSGYGFYNFGMTQNGWTS----LVIAGGIGFYLPEIALRLLIKGRVERIFLSLPDALD 167
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL++CVE+G+ +D A+RRV+E++ + + E L +L R+ + R+ +
Sbjct: 168 LLVVCVEAGLGLDAAMRRVSEELEETAPDVCSEFALCNLQLQMGRPRREVLHDLGIRSGV 227
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +R LIQ+D++G+SI +LRV R +R AE++AA K+ P+++F P
Sbjct: 228 DDMRALAAILIQADKFGSSIAQALRVQSDSMRVKRSQLAEEQAAMTAVKMIFPLVLFIFP 287
Query: 309 VLILVIIGPAILSIIDTM 326
+ +V++GPA + +I+ +
Sbjct: 288 GIFVVLVGPAAIMMINGL 305
>gi|260463899|ref|ZP_05812095.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259030274|gb|EEW31554.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/310 (20%), Positives = 142/310 (45%), Gaps = 9/310 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ A+ ++ + +V ++++R+K + + + +
Sbjct: 20 AILLLALGTVAVGWPMVAAKGDRNDVKRRLK--------VDHGPVAARPEPVQKKNANVV 71
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
K+++ + + KL AG+ ++ + ++R +I +G +
Sbjct: 72 REKAVKRAQEFYAKSDPENVARLRMKLIQAGYMEPRAVGMFFIIRF-SALIGGAIGAFVL 130
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + R +IL G G+ P + +S +++ + +PD +DL+++C +
Sbjct: 131 NRWLASADATMTSRWAFIILSGVAGYFLPGLVLSQKTREKMREYRNGFPDFMDLMIVCSD 190
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+S++ + RV++++ LS+ + L EL + A + +R +D VR+
Sbjct: 191 AGMSMEAGIERVSKELARTYPALSQNLQLVSLELRAGRSLDDALKALADRLSLDEVRSFA 250
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L QS GTS+ +LRV E R +R+ AE+KA +L K+++P+ + LPV++++ I
Sbjct: 251 TLLQQSKELGTSLSGALRVFSDEMRHKRMSLAEEKAHALPAKMSIPVTVCILPVVLMIAI 310
Query: 316 GPAILSIIDT 325
P I+ + T
Sbjct: 311 IPIIVKMTGT 320
>gi|283852078|ref|ZP_06369352.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
gi|283572468|gb|EFC20454.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
Length = 317
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 85/316 (26%), Positives = 142/316 (44%), Gaps = 4/316 (1%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
A+ + A S+ YAV + +L +
Sbjct: 2 LLFAITLCVAASVGLFAYAVGAMREERRRRREFAVRAMAVLHPAGGPGGEALGRPGLVGW 61
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L F + + K L AGFR ++ I ++ ++ L++G
Sbjct: 62 LIGLGQGLATRFGEAVKPKEAKELSKTRANLVHAGFRQPGAVEIYWGIKAGAGLVGLVVG 121
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ P Q ++ + GF P + + V+KRQ +I+R PDALDLL+
Sbjct: 122 ALLAL----SGRLPGQYKMFVALACVAGGFYLPGLLLDARVKKRQKAIQRGLPDALDLLV 177
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ +D A+ RV ++ + LS E+ L EL +R+ A +N +R ++ +
Sbjct: 178 VCVEAGMGLDAAIYRVCVEMASKEPVLSSELRLLTLELRAGKSRREALKNLSSRIGLEDM 237
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ LIQ+D +GTSI +LRV R++R AE+ AA L KL P+I F P L+
Sbjct: 238 GSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLAEELAAKLPVKLLFPLIFFIFPTLL 297
Query: 312 LVIIGPAILSIIDTMK 327
+VI+GPA++S++
Sbjct: 298 IVILGPAVISLMKMFG 313
>gi|148655425|ref|YP_001275630.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567535|gb|ABQ89680.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 311
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 74/316 (23%), Positives = 137/316 (43%), Gaps = 14/316 (4%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + + + ++ + S + R+ L + ++
Sbjct: 6 PMIGFGVLMLLGVGLIMIGMRR-SSQPDMISDRLSQFTERTMTLEEMELQQPFSQRVLVP 64
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L L + K + E + L AG + +RL + ++ I+
Sbjct: 65 LTKSILAKLGQYGPKQS------AERLRISLAQAGNPGNLTPMQFSGIRLALAVVLFIVV 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
F L + + +G+ P +W+ ++KR+ +I +A PDALDLL
Sbjct: 119 GAVTF----LQGMDVAQAMMYTAIGAGMGYLLPGIWLGQQIKKRKKAIVKALPDALDLLC 174
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVE+G+S DQA++R+ E PLS+E +++ R+ A ++ +R +D V
Sbjct: 175 ICVEAGLSFDQAMQRLTEKWDD---PLSKEFKRVLSDTRLGRPRRDAMKDMIDRCGVDDV 231
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ A+IQ+++ G SIG LR+ + R R AE++A K+ PM+ P L
Sbjct: 232 QTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEAHKAPIKMLFPMVFLIFPALF 291
Query: 312 LVIIGPAILSIIDTMK 327
+VI+GPA+ I+ ++
Sbjct: 292 IVILGPAVPRIMKSLG 307
>gi|85859132|ref|YP_461334.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
gi|85722223|gb|ABC77166.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
Length = 317
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 80/318 (25%), Positives = 148/318 (46%), Gaps = 3/318 (0%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
T + +++ + + + + E + + + + + S S +
Sbjct: 1 MNTLILISVMIFGATILFLTGLYLYIRYVREHAQLLDKIEKGSS-IPSMDLDSGSDVSPA 59
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + + + K N L G+R ++ +++++ ++
Sbjct: 60 RQLRALFVRITGRLGELVKPKKEDEVANFQKPLARIGYRGAHATLFFFGIKVLLAVLLPA 119
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + + + VGF P++W+ + R+ I +PDALDL
Sbjct: 120 LFLMAKLLAGI--AVNPLAVMIITLALALVGFYLPNLWLRLKIGARKEKIMEGFPDALDL 177
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ICVE+G+ +DQA+ RV E++ P+S+E E+ +R+ A N NRT++D
Sbjct: 178 MVICVEAGMGLDQAINRVGEEMKLSCPPISDEFRTLNMEMRMGKSRREALRNMANRTELD 237
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V + LIQ+D++GTSIG +LRV R +R AE+KAA L KL P+I F P
Sbjct: 238 DVTSLVTLLIQTDQFGTSIGQALRVHSDSMRVQRRQRAEEKAAKLPLKLLFPLIFFIFPS 297
Query: 310 LILVIIGPAILSIIDTMK 327
L +VI+GPA++ + +
Sbjct: 298 LFVVIMGPAMIQVFHALS 315
>gi|13471027|ref|NP_102596.1| integral membrane protein [Mesorhizobium loti MAFF303099]
gi|14021771|dbj|BAB48382.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
Length = 305
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 64/301 (21%), Positives = 136/301 (45%), Gaps = 2/301 (0%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
V+I L+ + K ++ R + + + + ++++
Sbjct: 3 VAILLLVLG-SVAVAWPMVAAKGDRNDVKRRLKVDHGAMAAKPEPPQKKNANVVRERAVK 61
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ + KL AG+ ++ ++R ++ +G + +
Sbjct: 62 RAQEFYAKSDPENVARLRMKLIQAGYMEPRAVGTFFIIRF-SALVGGAIGAFVLNQWLAS 120
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
E R VIL G G+ P + ++ V+++ + +PD +DL+++C ++G+S++
Sbjct: 121 AEATMTSRWAFVILSGVAGYFLPGLVLTQQVREKMREYRNGFPDFMDLMIVCSDAGMSME 180
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+ RV++++ LS+ + L EL + A + +R +D VR+ L QS
Sbjct: 181 AGIERVSKELAKTYPALSQNLQLVSLELRAGRSLDDALKALADRLSLDEVRSFATLLQQS 240
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
GTS+ +LRV E R +R+ AE+KA +L K+++P+ + LPV++++ I P I+
Sbjct: 241 KELGTSLSGALRVFSDEMRHKRMSLAEEKAHALPAKMSIPVTVCILPVVLMIAIIPIIVK 300
Query: 322 I 322
+
Sbjct: 301 M 301
>gi|56477520|ref|YP_159109.1| type II secretion system protein [Aromatoleum aromaticum EbN1]
gi|56313563|emb|CAI08208.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Aromatoleum aromaticum EbN1]
Length = 315
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 81/318 (25%), Positives = 144/318 (45%), Gaps = 13/318 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T++ V++ + + V+ R++++ + +
Sbjct: 1 MDYTQIGFLGLLFVAVTAGAF-FVMSLFSRSAAADRLQALGGGKSTVGAGADA------- 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R K + F K + + + AG R + V+ V+ +
Sbjct: 53 ---WIERTVKLTKPFAKLSTPEDSEDMSALRARFMHAGIRHAAAPLAFFGVKTVLALGLP 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + FQ + V+L +G+ P++ ++ L+ RQ I +PDALD
Sbjct: 110 LLA--YSTVLVSTPSLQFQGTLLVVLLAAAIGYYVPNIILNRLIFVRQREIFETFPDALD 167
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ +CVE+G+ ++ AL RVA+++ +S L+EE+ L EL R A N RT +
Sbjct: 168 LMTVCVEAGLGVEAALVRVADEMQHKSEALAEELHLVTLELRAGLERARALRNLAARTGV 227
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V +IQ++R+GTSI SLR+ R+ R AE+ AA + KL P+I F P
Sbjct: 228 EEVEGFVAMVIQAERFGTSIATSLRIHSDMLRTRRRQRAEEAAAKIALKLLFPLIFFIFP 287
Query: 309 VLILVIIGPAILSIIDTM 326
L+LV++GPA++ + +
Sbjct: 288 SLMLVLLGPAMIQVYRIL 305
>gi|239814537|ref|YP_002943447.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801114|gb|ACS18181.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 301
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 77/311 (24%), Positives = 142/311 (45%), Gaps = 20/311 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I V++ + + L E+R+++VA + S
Sbjct: 1 MLFPILVFVAVSLAVGGFAVWML-PTRTEQRLRAVAP----------------AGKSAWI 43
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + F + + + K AG R + ++ ++P+ F L +
Sbjct: 44 ETAVKIVGPFAQLSSPTGEGETSPLRLKFLNAGVRHPDASLFYFGLKTLLPLGFAALAFV 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L + V L+ G P++ + +++ RQ I +PDA DL+L+C
Sbjct: 104 TVRAAGADDGVTTLLWLAVVALL---GCYLPNIVLRMMIKSRQREIFENFPDAADLMLVC 160
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D AL +V E+I +S L++E+ T E+ R+ + N RT ++ +
Sbjct: 161 VEAGLGLDAALVKVTEEIRVKSEALAQELHWTNLEMRAGSTREKSLRNLALRTGVEEIGT 220
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L Q+DR+GTSIG+SLRV + R +R + AE+ AA + K+ +P+++ P + V
Sbjct: 221 FATMLTQADRFGTSIGESLRVFSEDLRHKRQVRAEELAAKVPTKMLLPLVVCIFPCISAV 280
Query: 314 IIGPAILSIID 324
I+ PA + I+
Sbjct: 281 ILTPAAIRIVR 291
>gi|327539548|gb|EGF26158.1| Flp pilus assembly protein TadC [Rhodopirellula baltica WH47]
Length = 311
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/325 (18%), Positives = 128/325 (39%), Gaps = 14/325 (4%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
FD F A++ + ++ L Y + + + E +
Sbjct: 1 MFDFFMASQWIALVGIFATVSILFYLAFLLW---DPYWRIVDGRVAEMLREDDSEEAGTD 57
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + K L N+ ++L AG L ++R
Sbjct: 58 QSTDFGDPKETPKSGTTWLGGKSAL-------NLESQLINAGIHHHGMHRKLTMLRW--- 107
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++ I E P V + + + + P +W+ V+K ++ A P
Sbjct: 108 -LLFLVPPIVFGSLCYRGEMPLNWAVMSSSFLMLLAYSLPVMWLKRAVRKYHQMLRAALP 166
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D LDL+++C+++G+S+ +++++V E++ + E+ L ++ A F +
Sbjct: 167 DFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQHDIDLGSPVDKAIRRFAD 226
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R+ D +R + + + R+GT++ +SL R +R AE+ A K+ +P ++
Sbjct: 227 RSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAAEENAQKASVKIILPTML 286
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
F P + +V++ PA I +
Sbjct: 287 FIFPAIFIVLVSPAAFKIQEAFAAQ 311
>gi|241662160|ref|YP_002980520.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864187|gb|ACS61848.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 313
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/319 (25%), Positives = 151/319 (47%), Gaps = 11/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ T + +F + + + + L++R+ + ++ L A
Sbjct: 1 MQIAHTLLLAGTFIVVFGAVL-IALFVVRPTILQQRLGQID--------RESPGLAPKQA 51
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + + R + K D + + AG+RS ++ I ++ +
Sbjct: 52 PSDWLRKLGRLARPLARASLPKEGWEDSALKARFVHAGWRSPEAVPIYFGIK--TALAGG 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I ++ + + + A++ GF P+V ++ +++R+ I A+PD+LD
Sbjct: 110 IPLVLSLLLVRRFDSDHETAYLAALLAGALFGFYLPNVVLAMKIKRRKRDIFEAFPDSLD 169
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A+ RV ED+ ++ E L EL R+ A NF RT +
Sbjct: 170 LIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRAGLAREKALRNFAARTGV 229
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V LIQ+DR+GTS+ +SLRV R++R M AE++AA +G K+ P+I P
Sbjct: 230 EDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERAAKIGTKVLFPLIFCLFP 289
Query: 309 VLILVIIGPAILSIIDTMK 327
L +V++GPA + I+ ++
Sbjct: 290 ALYVVLLGPAGIQIMAGLR 308
>gi|319783869|ref|YP_004143345.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169757|gb|ADV13295.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 320
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/272 (22%), Positives = 129/272 (47%), Gaps = 1/272 (0%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE 110
R + + + + K+++ + + KL AG+
Sbjct: 47 RRLRVDNGPVAAKPEPVQKKNTGIVREKAVKRAQEFYARSDPENVARLRMKLIQAGYMEP 106
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ ++R +I +G+ + + + R VIL G G+ P + +S
Sbjct: 107 RAVGTFFLIRF-TAMIGTAIGVFVLNRWMASPDATMASRWTFVILSGAAGYFLPGLVLSQ 165
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
V++R+ + +PD +DL+++C ++G+S++ + RV++++ LS+ + L EL
Sbjct: 166 KVRERRREYRNGFPDFMDLMIVCSDAGMSMEAGIERVSKELAKTYPALSQNLQLVSLELR 225
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A + +R +D VR+ L QS GTS+ +LRV + R +R+ AE+K
Sbjct: 226 AGRSLDDALKALADRLSLDEVRSFATLLQQSKELGTSLSGALRVFSDDMRHKRMSLAEEK 285
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A +L K++VP+++ LPV++++ P I+ +
Sbjct: 286 AHALPAKMSVPVVVCILPVVLMIAAIPVIVKM 317
>gi|32471258|ref|NP_864251.1| integral membrane protein [Rhodopirellula baltica SH 1]
gi|32396960|emb|CAD71930.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
Length = 313
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/325 (18%), Positives = 128/325 (39%), Gaps = 14/325 (4%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
FD F A++ + ++ L Y + + + E +
Sbjct: 3 MFDFFMASQWIALVGIFATVSILFYLAFLLW---DPYWRIVDGRVAEMLREDDSEEAGTD 59
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + K L N+ ++L AG L ++R
Sbjct: 60 QSTDFGDPKETPKSGTTWLGGKSAL-------NLESQLINAGIHHHGMHRKLTMLRW--- 109
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++ I E P V + + + + P +W+ V+K ++ A P
Sbjct: 110 -LLFLVPPIVFGSLCYRGEMPLNWAVMSSSFLMLLAYSLPVMWLKRAVRKYHQMLRAALP 168
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D LDL+++C+++G+S+ +++++V E++ + E+ L ++ A F +
Sbjct: 169 DFLDLMVVCLDAGLSLQESIKQVGEELRWIHPAFTHEIDLVQHDIDLGSPVDKAIRRFAD 228
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R+ D +R + + + R+GT++ +SL R +R AE+ A K+ +P ++
Sbjct: 229 RSGYDALRTLSSLIREGQRFGTNVSESLSGHADMLRFQREQAAEENAQKASVKIILPTML 288
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
F P + +V++ PA I +
Sbjct: 289 FIFPAIFIVLVSPAAFKIQEAFAAQ 313
>gi|309780755|ref|ZP_07675496.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308920437|gb|EFP66093.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 313
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/319 (25%), Positives = 150/319 (47%), Gaps = 11/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ T + +F + + + + L +R+ + ++ L A
Sbjct: 1 MQIAHTLLLAGTFIVVFGAVL-IALFVVRPTILRQRLGQID--------RESPGLAPKQA 51
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + + R + K D + + AG+RS ++ I ++ +
Sbjct: 52 PSDWLRKLGRLARPLARASLPKEGWEDSALKARFVHAGWRSPEAVPIYFGIK--TALAGG 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I ++ + + + A++ GF P+V ++ +++R+ I A+PD+LD
Sbjct: 110 IPLVLSLLLVRRFDSDHETAYLAALLAGALFGFYLPNVVLAMKIKRRKRDIFEAFPDSLD 169
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A+ RV ED+ ++ E L EL R+ A NF RT +
Sbjct: 170 LIMVCVEAGLGLDSAVLRVVEDMRDARPAMAHEYELLTLELRAGLAREKALRNFAARTGV 229
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V LIQ+DR+GTS+ +SLRV R++R M AE++AA +G K+ P+I P
Sbjct: 230 EDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRQMLAEERAAKIGTKVLFPLIFCLFP 289
Query: 309 VLILVIIGPAILSIIDTMK 327
L +V++GPA + I+ ++
Sbjct: 290 ALYVVLLGPAGIQIMAGLR 308
>gi|296122167|ref|YP_003629945.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014507|gb|ADG67746.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 312
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 4/312 (1%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + ++ ++ + + ++ R +S A +R + Q+ + +
Sbjct: 1 MMIDFATIVPLAIFASITLAVFAALQIFSREQSRASQRLDEFNNPLLREQQRGQKNGMSN 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
K+ K L K+ L + +L AGF S + I L ++ V ++ L+L
Sbjct: 61 LLEKAAPALSKALEPKSELEQSQLKIRLANAGFHSPQAPMIYLAIKTVCLVVGLVL---- 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G Q + +I+ GF P ++ L+ KR+ +I PD LDLL++CV
Sbjct: 117 GGGLGMYRYGTTQAGLTTLIIAAGAGFYLPEGVLAYLISKRKQAIFLQLPDVLDLLVVCV 176
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D LRRVAE++ + + E+ + +L NR+ + RT +D V+
Sbjct: 177 EAGLGLDAGLRRVAEELKDTAPEICGELAMCNLQLQMGRNRRDMLHDLGVRTGVDDVKAL 236
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+IQ+D++G+SI +LRV R +R AE+KA ++ PM+IF P + +V+
Sbjct: 237 VAIMIQADKFGSSIAQALRVQSDSMRVKRRQIAEEKAQKTAVQMLFPMVIFIFPGIFVVL 296
Query: 315 IGPAILSIIDTM 326
+GPA + ++D +
Sbjct: 297 VGPAAIKMMDQL 308
>gi|300692336|ref|YP_003753331.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
gi|299079396|emb|CBJ52067.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum PSI07]
Length = 313
Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 74/319 (23%), Positives = 151/319 (47%), Gaps = 11/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + F I A+ + + L++R+ + E LR +
Sbjct: 1 MQIAHIVLLAGAFSIAFCAILAI-LVVMRPHTLQRRLGQIDRETPQLRPKIEE------- 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + + K D ++ + AG+R+ ++ I V+ ++
Sbjct: 53 -HDWLHTAERIAKPLARASVPKEGWEDSSLHTRFVHAGWRAPEAIPIYFGVKTILAFGLP 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L ++ + + + + +GF P++ ++ ++ RQ + ++PD+LD
Sbjct: 112 VL--LFPLALGQFDASQRLQFLTVLFVAAAIGFYLPNLVLAWKIKYRQRDVFESFPDSLD 169
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A+ RV +++ +++E L EL +R+ A +F RT +
Sbjct: 170 LIMVCVEAGLGLDAAILRVVDEMRAARPVMAQEYELLTLELRAGLSREKALRHFAARTGV 229
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D V LIQ+DR+GTSI SLRV R++R M AE++AA +G K+ P+I P
Sbjct: 230 DDVSLLVAMLIQADRFGTSIAASLRVHSDMLRTKRQMLAEERAAKIGTKILFPLIFCIFP 289
Query: 309 VLILVIIGPAILSIIDTMK 327
+ +V++G A++ I++ ++
Sbjct: 290 SIYVVLLGSALIQIVEALR 308
>gi|163751752|ref|ZP_02158970.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
gi|161328404|gb|EDP99563.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Shewanella benthica KT99]
Length = 322
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 19/329 (5%)
Query: 4 YFFDLFDATE-LAVAITTAVSIFSLIYAVVIPSLGS---GELEKRMKSVAVEREILRKQQ 59
LFD E + A+ +I + A+ I + L KR+K + E +
Sbjct: 7 LLSTLFDDPEHVKWAVYVMAAIAGITLAISISLFITGIYSPLRKRLKIINQTGEGHHMTR 66
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + L L +++ L AG SE +L + V
Sbjct: 67 TDVNAT----------IEHGIGRMASRTPLN--LTNDDTRRLLIHAGLHSENALAVFSSV 114
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL I+ LI + + E + V V L+ + PS+ + +L +R ++
Sbjct: 115 RL---ILLLISAGLSVLILSLFPEISGMMSVYVVALMVGGAYLLPSMVLQHLASRRMKNL 171
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +PDALDLL++C E+G+ + AL+RVA ++ L+ E+ L +++ +VA
Sbjct: 172 RAGFPDALDLLVVCCEAGLGLLAALQRVANELAISHASLASELDLVCSKVRAGLTIKVAL 231
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F RT ++ ++ A+ QS R GT I +LR+ E R +RL +AE++AA L K+
Sbjct: 232 QEFTERTGLEDIKGLNSAISQSIRLGTGIAATLRIFSDEYRDKRLQDAEEQAAKLAVKMI 291
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
PM++ P +V +GPA+L ++
Sbjct: 292 FPMMLCIWPSFFIVAVGPAVLKVMKVWGQ 320
>gi|207728101|ref|YP_002256495.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
gi|206591346|emb|CAQ56958.1| pilus assembly protein tadc [Ralstonia solanacearum MolK2]
Length = 314
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 76/319 (23%), Positives = 150/319 (47%), Gaps = 11/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + T + IF + A + L L++R+ + ++ +
Sbjct: 1 MQIAQTVLLAGTFIIIFGAVLA-ALTILRPSALQRRLGQID--------REAPGRVQQET 51
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + + + K K + ++ + AG+R+ ++ I V+ ++
Sbjct: 52 PSDWLRKIGQIAKPLAKASLPKDGWENSDLRARFVHAGWRAPEAIAIYFGVKTLLAAGLP 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + + ++ +GF P+V + +++RQ I A+PD+LD
Sbjct: 112 LLLS--LALLGRFDASHQTEYLTVLLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLD 169
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A+ RV E++ ++EE + EL R+ A N RT +
Sbjct: 170 LIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRAGLAREKALRNLAARTGV 229
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V LIQ+DR+GTS+ +SLRV R++R M AE++AA + K+ P+I P
Sbjct: 230 EDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERAAKISTKILFPLIFCIFP 289
Query: 309 VLILVIIGPAILSIIDTMK 327
L +V++GPA + ++ ++
Sbjct: 290 SLFVVLLGPAAIQVVGALR 308
>gi|116620536|ref|YP_822692.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116223698|gb|ABJ82407.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 315
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 83/312 (26%), Positives = 145/312 (46%), Gaps = 10/312 (3%)
Query: 17 AITTAVSIFSLIYAVVIPSLGS--GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
I ++ F ++ ++ + K ++ + +Q + +
Sbjct: 4 PILFSLCAFLMLMLILSWVGYRLIYKPGKFLRQLGNPVITNASKQRIIEEGGEPEASALV 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + V + N+ L AGFR E +L + VR++ + LIL ++
Sbjct: 64 TVLHQIGSRV----PSSDAEVANLKVDLIRAGFRGENALAVFYGVRILTTLGMLILCVMM 119
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + +++G + G+ P ++ V KRQ +++ + PDALDLL++ +
Sbjct: 120 ----EARMPPNPVMQLGLMGSGICAGWILPRFFLEKRVAKRQETLRLSLPDALDLLVVSI 175
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +DQA++ VA ++ LS+EM L E+ R A NF RT R
Sbjct: 176 EAGLGLDQAIQHVARELYASHPQLSDEMQLVTLEMRAGKRRSEALRNFAERTGEAEFRKL 235
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
LIQ+DR+GTS+G+SLR R+ R EAE++A +G KL P+ F LP +++V
Sbjct: 236 VAILIQNDRFGTSMGESLRTHSDFLRTRRRQEAEERAGKVGVKLVFPIFFFILPSMLVVA 295
Query: 315 IGPAILSIIDTM 326
GP IL I +
Sbjct: 296 AGPGILQIFKYL 307
>gi|297618076|ref|YP_003703235.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145913|gb|ADI02670.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 295
Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 77/317 (24%), Positives = 137/317 (43%), Gaps = 23/317 (7%)
Query: 12 TELAVAITTAVSIFSLIYAV-VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
ELAV ++ F L V + +R++ ER+ Q++
Sbjct: 1 MELAVYGAVFLAGFCLTLGVGYTLFWERMAVLERLEHYTEERKKTIYQELNQPLSQRVFK 60
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L + ++ FV K +A ++L AG + + V ++L
Sbjct: 61 PLIGAALRGMKRFVPKEKARAY------EHRLTLAGNPHGLEAETFVAAKYGVFAAAVLL 114
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G++ ++L+G G P ++++ ++R I ++ PD LDLL
Sbjct: 115 GLL-------------TRSPWLLVLLGMAGLLLPDMYLNLCRRQRSEGILKSLPDVLDLL 161
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ VE+G+ D AL++V E PL++E + E+ R+ A + R ++D
Sbjct: 162 SVSVEAGLGFDAALQKVVEK---SQGPLADEFDTALNEIRMGKPRREALRDMARRVEVDD 218
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V A++Q+D G SI + L V + R +R AE+KA K+ +PM+ F P +
Sbjct: 219 VSTFVGAVVQADTLGVSISNVLTVQAEQVRQKRRQRAEEKAQKAPVKILIPMLFFIFPTI 278
Query: 311 ILVIIGPAILSIIDTMK 327
+V++GPA+L I K
Sbjct: 279 FIVLLGPALLQIGKVFK 295
>gi|225181994|ref|ZP_03735426.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225167279|gb|EEG76098.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 305
Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 75/316 (23%), Positives = 150/316 (47%), Gaps = 14/316 (4%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ +A+ +++ + I A+ +L+ R+K+V E +Q S
Sbjct: 1 MQAIIALLVFLTLVTFITALQNKLQPAKVDLQGRLKNVINYDETADIRQAELS--RPLSE 58
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R+ + L +L IL + K++ AG +S L +++V
Sbjct: 59 RICSPLLGVLSALASRLLPADILKG--LERKVQQAGMTGGFSAKDYLGMKVVFAFGLPFF 116
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ V + G +G+ P + + N + R++SI++++PD LDLL
Sbjct: 117 FYLL------FGRDLSPQTFLIVAIAGVLGWRLPEMKLENTARSRKASIEKSFPDTLDLL 170
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V +G+ D AL A+ + P++EE + E+ R+ A +F RT +D
Sbjct: 171 TVSVGAGLGFDGAL---AKVVEKSEGPVAEEFRRVLQEIKMGKARREALRDFGERTGIDD 227
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V++ T A++Q+D+ G +IG +L+V + R +R E++A + K+ +P++ F P +
Sbjct: 228 VKSFTGAIVQADQLGLNIGKTLKVQSEQMRRKRRQRVEEQAMKVPVKMLLPLVAFIFPTI 287
Query: 311 ILVIIGPAILSIIDTM 326
+V++GPA++ I++T+
Sbjct: 288 FIVLLGPAMIQIVETL 303
>gi|320161469|ref|YP_004174693.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
gi|319995322|dbj|BAJ64093.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
Length = 319
Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 73/314 (23%), Positives = 140/314 (44%), Gaps = 10/314 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD---SASSR 71
+ + + V I + R+ +E R +Q+ + + S R
Sbjct: 6 IIIGVVGLVVIGAGALVYIGLRNPTSADDRLLQQRLEEFNQRGEQVDLEKIELSLPFSER 65
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ ++ L + + + D I KL AG + + L ++ +
Sbjct: 66 VIFPMARKLGEIAVRFTPQNAMQD--INRKLELAGNPGKLDATVFLALQFIAG--GFFGA 121
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++++ Y +PF + V+ +GF P +W+++ + +RQ I+++ PDALDLL
Sbjct: 122 VLFLAMYFGQSNWPFGQKFLVVLGGTLLGFFFPQIWLTSKISRRQKEIRKSMPDALDLLT 181
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
ICVE+G+ D A+ +VAE LS I E+ R+ A + R + +
Sbjct: 182 ICVEAGLGFDAAMAKVAEK---WESELSLAFARVIQEIQLGKTRRDALRDMAERIGIPEM 238
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ A+IQS++ G S+ LR+ + R R AE++A K+ +PM + P L+
Sbjct: 239 TSFVAAVIQSEQLGVSMAKVLRIQSDQMRVRRRQAAEEEAHKAPVKMLIPMALLIFPSLM 298
Query: 312 LVIIGPAILSIIDT 325
+V++ PA L ++++
Sbjct: 299 IVLMTPAALRLMNS 312
>gi|118581108|ref|YP_902358.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503818|gb|ABL00301.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 302
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 16/317 (5%)
Query: 12 TELAVAITTAVSIFSLI-YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + +S+ ++ A+ GEL++R++ + E+ Q T+ +D
Sbjct: 1 MLIVITGFIFLSVAMVVSLALYPLLTKKGELQERLEKMMPEK-----QASTTFSEDKPWW 55
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R+ D + K L AAGFR + SL + L +L + +I +
Sbjct: 56 RITIEDLGAKLPVAAK-------EQTKYTRMLVAAGFR-KESLYLFLGSKLALALILPGI 107
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
I +L P + + GF PS W+ V R++ I PD LDLL
Sbjct: 108 YIFTYALPKGVLMEP--EPLLYTTGLAIAGFLLPSGWLMYKVNNRKTEIFHTLPDILDLL 165
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ VE+G+ ID AL R E + PL+EE+ + E+ R A + RT ++
Sbjct: 166 TVSVEAGLGIDAALNRACESPQFKGNPLAEELKIAAREIRAGKPRGDALRDMAERTDVED 225
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR L+Q++R+GTS+ +LRV R++R AE++AA K+ P+I+F P L
Sbjct: 226 VRAFVTMLVQTERFGTSLSLALRVHSDSLRTKRRQIAEERAAKTAIKILFPLILFIFPAL 285
Query: 311 ILVIIGPAILSIIDTMK 327
++++IGPA ++D K
Sbjct: 286 MIILIGPAFFKLMDIFK 302
>gi|264678228|ref|YP_003278135.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208741|gb|ACY32839.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 303
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 19/312 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L VA+ T ++ A+ + E+R++S+ S
Sbjct: 2 LIVALLTFTAVMLAAGALFFWAT-PTVAERRLQSLT---------------PTSQDKGWT 45
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + F + + + AG R E + + V+ ++PI LG+
Sbjct: 46 ETVVKLVGPFAHLSSPTKDSDATPLRLRFLNAGIRHESAPLLYFGVKTLLPIA---LGLA 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + ++ V P++ + + +R+ I +PDA DL+L+C
Sbjct: 103 VYSLMRAASKADSTQLLFFPLVTALVACYLPNLVLRWMASRRKREIFENFPDAADLMLVC 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D AL +V ++I +S L+EE+ T E+ R+ + N RT +D +
Sbjct: 163 VEAGMGLDAALGKVTDEIRIKSEALAEELHWTNLEMRAGSTREKSLRNLAARTGVDEIHT 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T L Q+DR+GTSIG+SLRV + R +R M AE+ AA + K+ +P++ P +I+V
Sbjct: 223 FTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRAEELAAKIPTKMLLPLVTCIFPAIIMV 282
Query: 314 IIGPAILSIIDT 325
++GPAI+ I+
Sbjct: 283 VLGPAIIRIVRM 294
>gi|296122064|ref|YP_003629842.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014404|gb|ADG67643.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 426
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/282 (23%), Positives = 128/282 (45%), Gaps = 4/282 (1%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ S + R+ R + +L + L +A ++I + L A
Sbjct: 114 VDSSSTYRDRSRGLPRVLAEDLPDELNQGEMTFGALTPALASLLPEAGSRQDSIRSDLYA 173
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+ S ++ VR + I+ ++ + + E + +GA++L+ VG+ P
Sbjct: 174 AGYYSPRAVMNFSAVRYLAMILPMLFCGVLLLFVPPRFE---PIVIGAIVLMPIVGWSLP 230
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ + N + R++ I++A PD LD+L +CV G+++ +L R+ ++ G L +E+ +
Sbjct: 231 RLMVRNKARDRRNEIEKAMPDLLDMLNMCVSQGMTVPASLERIRVEMKGAYPALEQELKI 290
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + VA +NF R + V + T L+Q+ R GTS+ +L R
Sbjct: 291 INEQSRIG-SMDVALKNFSQRVDVPEVHSFTSLLMQTSRMGTSVSGALTEYAETMRESLK 349
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE+K +L P ++ +P + L ++GPAI+ +
Sbjct: 350 QRAEEKGNRATFRLLFPTVLCLMPAVYLFLMGPAIIELSRFF 391
>gi|322419939|ref|YP_004199162.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126326|gb|ADW13886.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 303
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 75/315 (23%), Positives = 141/315 (44%), Gaps = 14/315 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A+ T +I L A + P + +SV R + + Q S + +
Sbjct: 3 YAITATVFFAIVLLTCAALYPYMSR-------RSVVQSRLVKLEVQEVSKVELVPEAPKW 55
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + + L AAG++ + S+ + +++ + + G
Sbjct: 56 YDQLSEIGKSLSF----SSKEQGKYMKMLVAAGYK-KESVFVFFGCKIL--LACGLPGFY 108
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+F + + +++ +G+ APS W+ + +RQ I PD LDL+ +C
Sbjct: 109 LLFYVMSKGFTMNRQLILGALILAILGYLAPSYWLYHQYNERQLKIFHTLPDILDLITVC 168
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V++G+S+D AL + E + PL++E+ + E R + ++ RT +D VR
Sbjct: 169 VDAGLSMDAALIKTTETPQFANDPLAKEIKIATMETRAGKPRIESLKDMAERTMVDDVRA 228
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L Q++R+GTS+ +L V R++R AE+ AA K+ P+I+F P L++V
Sbjct: 229 FVTMLSQTERFGTSLSQALSVHAESLRTKRRQMAEEAAAKTTIKMVFPLILFIFPALLVV 288
Query: 314 IIGPAILSIIDTMKD 328
I+GPA + I +
Sbjct: 289 ILGPAYVQISRVLMK 303
>gi|83312845|ref|YP_423109.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
gi|82947686|dbj|BAE52550.1| Flp pilus assembly protein TadC [Magnetospirillum magneticum AMB-1]
Length = 339
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 116/298 (38%), Positives = 182/298 (61%), Gaps = 6/298 (2%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD----SKSLRNFVKKLNL 89
P L R+K+V+ R L ++Q L + A+SR R +R + +L L
Sbjct: 44 PLLARDRRASRIKAVSNRRRELSERQKAELDQARATSRRRGARPQRRVALMRAVIDRLKL 103
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ +L + + +L AG+RS+ + + R+ +P+I L LG+I+ E P +R
Sbjct: 104 QDLLEAKALRAQLACAGWRSQAAPLTFIFARVALPVILLALGLIYATTL--FDEQPLMIR 161
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ +G P++W++N VQKRQ ++ RA+PDALDL++ICV++G+S++ AL RV E
Sbjct: 162 ALILAAAMGIGALLPNIWLTNAVQKRQMALSRAFPDALDLIVICVDAGLSVETALGRVTE 221
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
++ + ++EE+ LT AEL+FL +R+ A+ENF RT + V++ ALIQS++YGT +
Sbjct: 222 EMMISAPEMAEEIGLTAAELAFLADRRHAWENFAERTGLPQVKSLATALIQSEKYGTPVA 281
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+L+V+ E R R+ AEKKAA+L KLTVPMI+FFLPVL L+I GPA + + MK
Sbjct: 282 QALKVISQENREGRMAAAEKKAAALPAKLTVPMIVFFLPVLFLIIAGPAAIQVSGMMK 339
>gi|303241709|ref|ZP_07328206.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590710|gb|EFL60461.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 306
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 12/316 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ SIF Y + +G + R + V R ++ ++ + L
Sbjct: 1 MIIYLLLASIFISSYFIFYAFVG---VFYRNRKVVSIRLDRITKEDVKTLENELNQPLFV 57
Query: 75 RDSKSLRNFVKKLNLKAILV--DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + + + + K+ L+ K+ AG S+ + +++++ +I +
Sbjct: 58 RVIRPILDDISKVILRITPKEFKSAFEKKVVNAGNPFNLSMKDWINMQVIIVVILPFI-- 115
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
G L + V I+ G P++ ++ + +RQ I + PD LDLL +
Sbjct: 116 --TSGVCYYLGLDVRSIVFVGIIEICFGLLFPNLVLNKQIAQRQKKILNSLPDVLDLLTV 173
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
VE+G+ D AL A+ I P++ E + E+ ++ A ++ R + +
Sbjct: 174 SVEAGLGFDGAL---AKVIDKMPGPIAIEFENVLQEMKVGKQKRDALKDMAERVGLHDLT 230
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
++IQ+D+ G SIG+ LR+ + R +R A++KA K+ +PM++F P +
Sbjct: 231 TFVGSIIQADQLGVSIGNVLRIQSEQMREKRRQRAKEKAMKAPVKMLIPMVLFIFPTIFS 290
Query: 313 VIIGPAILSIIDTMKD 328
V+IGP I+ +I T
Sbjct: 291 VLIGPVIIKVIYTFTK 306
>gi|302391033|ref|YP_003826853.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203110|gb|ADL11788.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 306
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 74/313 (23%), Positives = 145/313 (46%), Gaps = 10/313 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + +++ L V KR+++ + L+++ + ++ S R
Sbjct: 1 MLLIAAVFIAVAGLTLVVGYYLSQPS---KRVQNRLQKYAQLQREVLPRREELELSFWER 57
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ V + L + V ++I +L AG + L ++ + + +
Sbjct: 58 VIRPGLQKMAVLFVKLTPLGVKDSIRKRLILAGRPFDLEAKEFLALQGNLMAVLPGI--- 114
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
I G + + ++ G+ GF P +S + +RQ +++A PD LDLL +
Sbjct: 115 -ILGGLMIAGVSLNTALMYSLIFGFAGFVIPRFLLSKKISERQKKMQQALPDVLDLLTVS 173
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ D AL RV + I G P+SEE + E+ R+ A + RT ++ + N
Sbjct: 174 VEAGLGFDSALVRVVDKIAG---PISEEFERLLQEIRMGKPRRDAMRDLGERTNVEDLTN 230
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A++Q+D+ G SIG LRV + R +R AE +A K+ +P++ F P L ++
Sbjct: 231 FITAIVQADKLGVSIGKVLRVQSKQIRQKRRQRAEAQAMKAPIKMLLPLVFFIFPTLFII 290
Query: 314 IIGPAILSIIDTM 326
++GPA + +++++
Sbjct: 291 LLGPAAIKVMNSL 303
>gi|156741661|ref|YP_001431790.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232989|gb|ABU57772.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 311
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 139/317 (43%), Gaps = 17/317 (5%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGS----GELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + ++ L +++ + + R+ L + ++
Sbjct: 4 MLPMIGFGALMLLGVGLIVFGMRRSSQPDAISDRLSQFTERTMTLEEMELQQPFSQRVLV 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L L + K + E + L AG + +RL + +I ++
Sbjct: 64 PLTKSILAKLGEYGPKQS------AERLRISLAQAGNPGNLTPIQFSGIRLALAVILFLV 117
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
F + + + G +G+ P +W+ ++KR+ +I +A PDALDLL
Sbjct: 118 VGAVTFLQGMEMSQ----ALMYTAIGGVMGYLLPGIWLGQQIKKRKKAIIKALPDALDLL 173
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
ICVE+G+S DQA++R+ E PLS+E +++ R+ A ++ +R +D
Sbjct: 174 CICVEAGLSFDQAMQRLTEKWED---PLSKEFKRVLSDTRLGRPRRDAMKDMIDRCGVDD 230
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+ A+IQ+++ G SIG LR+ + R R AE++A K+ PM+ P L
Sbjct: 231 VQTFIGAVIQAEQLGVSIGRILRIQSDQMRIRRRQRAEEEAHKAPIKMLFPMVFLIFPAL 290
Query: 311 ILVIIGPAILSIIDTMK 327
+VI+GPA+ I+ ++
Sbjct: 291 FIVILGPAVPRIMKSLG 307
>gi|83749633|ref|ZP_00946616.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|207744163|ref|YP_002260555.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
gi|83723694|gb|EAP70889.1| TRANSMEMBRANE TIGHT ADHERENCE TADC-RELATED PROTEIN; tadC1
[Ralstonia solanacearum UW551]
gi|206595567|emb|CAQ62494.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
Length = 314
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 75/319 (23%), Positives = 148/319 (46%), Gaps = 11/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + T + IF + A + L L++R+ + ++ ++
Sbjct: 1 MQIAQTVLLAGTFIIIFGAVLA-ALTILRPSALQRRLGQID--------REAPGRVQEET 51
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + + K K + + AG+R+ ++ I V+ ++
Sbjct: 52 PYDWLRKIGQIAKPLAKASLPKDGWENSGLRAHFVHAGWRAPEAIAIYFGVKTLLAAGLP 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + + ++ +GF P+V + +++RQ I A+PD+LD
Sbjct: 112 LLLS--LALLGRFDASHQTEYLTVLLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLD 169
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A+ RV E++ ++EE + EL R+ A N RT +
Sbjct: 170 LIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYEILTLELRAGLAREKALRNLAARTGV 229
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V LIQ+DR+GTS+ +SLRV R++R M AE++AA + K+ P+I P
Sbjct: 230 EDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERAAKISTKILFPLIFCIFP 289
Query: 309 VLILVIIGPAILSIIDTMK 327
L +V++GPA + ++ ++
Sbjct: 290 SLFVVLLGPAAIQVVGALR 308
>gi|296134293|ref|YP_003641540.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032871|gb|ADG83639.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 304
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 15/317 (4%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
V T V++F L+ + + VA E + +D
Sbjct: 1 MLYLVLGLTFVTVFFLVQGIYYTVYRDKII------VAQRIEEIISMNEKQQIEDELDRP 54
Query: 72 LRTRDSKSLRNFVKKL--NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + + + ++ KL AAG + S N +V++ + ++ +
Sbjct: 55 FFERVVRPVLERIALSLGKAIPAKKRISLQRKLLAAGNPLDLSPNEFMVIQYALTLLLPV 114
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+GI+ + + V V L G +GF P ++ RQ I+ PD LDL
Sbjct: 115 IGIVVVLPLG----WSPVGMVAVVALGGTIGFLLPEYYLKAKSAARQEEIQDTLPDVLDL 170
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + VE+G+ D A+ +V E I G LS+E + E+ R+ A ++ RT ++
Sbjct: 171 LTVSVEAGLGFDAAMVKVVEKIKG---VLSQECARMLQEVKMGKPRRDALKDLGVRTGVE 227
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V++ A+IQ+D+ G SIG+ LRV + R +R AE+KA K+ +P+IIF P
Sbjct: 228 DVQSFVGAVIQADQLGVSIGNVLRVQSEQMRQKRRQRAEQKAMKAPVKMLIPLIIFIFPT 287
Query: 310 LILVIIGPAILSIIDTM 326
+ +V++GPA + ++ T
Sbjct: 288 IFIVVLGPAAIQVLKTF 304
>gi|294012231|ref|YP_003545691.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292675561|dbj|BAI97079.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 322
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 76/309 (24%), Positives = 148/309 (47%), Gaps = 8/309 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ ++I +L++ + + + + R+ V Q +++S+ +
Sbjct: 14 ILGFLFIAIVALVFGLSEVVMRNARVRSRLDLVGEGGASQNGSQTLRGERNSSEWKKLVD 73
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + N + ++ +L AAG+ S + + + RLV+ + +I
Sbjct: 74 RIEKMGVSLVDTN------NVDLRRRLIAAGYMSPEAPKLFTLFRLVLTFALPAIFVITS 127
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ L+ +G P+++IS +RQ I +PDALDL+L+CVE
Sbjct: 128 LRNPEPPTALTLY--MVASLLAVLGLYMPNLYISAKASRRQEEIVHGFPDALDLMLVCVE 185
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ ++ A+ RV ++ +S + + EL +RQ A + +D +R+
Sbjct: 186 AGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGRSRQDALRRMADDVDVDEIRSFA 245
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQSD+ G+S+G +LRV +E R +R M AE+KA L L+VP++ LPV+I V++
Sbjct: 246 TLLIQSDQLGSSVGQTLRVYAAEMREKRRMRAEEKAHRLPVLLSVPLVACMLPVMIGVLM 305
Query: 316 GPAILSIID 324
PA++ ++
Sbjct: 306 LPAVVRVVR 314
>gi|163846103|ref|YP_001634147.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222523838|ref|YP_002568308.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
gi|163667392|gb|ABY33758.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222447717|gb|ACM51983.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
Length = 311
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 75/313 (23%), Positives = 145/313 (46%), Gaps = 10/313 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + I + +++I ++ + + + + + R+
Sbjct: 1 MMDLLIVAGIVVIGASLIIVAVRQMNQSRAISERLDQYTDISLSLEELELQQPFRERVLV 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+SL N + + LK E + L+ AG S N+ + +R+ + I+ ++ +
Sbjct: 61 PLFRSLLNTLGRFGLKQ--NQERLRINLQLAGNPGNISPNMFIGLRMALAIVLFVVIGLL 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+F PF + ++ G +G+ P +W+ +++R+ +I +A PDALDLL I V
Sbjct: 119 VF-----GRLPFMQALMGALIAGMIGYILPGIWLDRKIKERKKNILKALPDALDLLCISV 173
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G++ D AL+RVA+ LS E + ++ R+ A + RT ++ V+
Sbjct: 174 EAGLAFDLALQRVAQK---WDNELSREFQRVLQDIRLGRTRREALRDLVTRTGVEDVQTF 230
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+IQ+D+ G S+ LR+ + R R AE+ A K+ +PM+ P L +VI
Sbjct: 231 VSAVIQADQLGVSMSKILRIQSDQLRVRRRQRAEEAAQKAPVKMLIPMVFLIFPALFVVI 290
Query: 315 IGPAILSIIDTMK 327
+GPA+ I+ +
Sbjct: 291 LGPAVPRIMQALG 303
>gi|323700365|ref|ZP_08112277.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
gi|323460297|gb|EGB16162.1| Type II secretion system F domain [Desulfovibrio desulfuricans
ND132]
Length = 318
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 77/315 (24%), Positives = 133/315 (42%), Gaps = 8/315 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L A VS+ Y ++ G+ + K + V+
Sbjct: 8 LFAAGIGFVSVLLAGYGLLGYLSGASDSAKLKERVSGTTVKRSDALTA------PLGNAV 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K+ + +L AG R S I ++ + + ++
Sbjct: 62 KSVVDFFGRLGTKIGPTETEEIDKGRLRLIQAGMRKPDSYKIFQGLKGFLAVGLAGGFLL 121
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
F + + + + + + VG P W+S + +R+ ++ PDALDLL++C
Sbjct: 122 VRFLF--IEDMSIAMTAFGTVTLAAVGVYGPEYWLSKKINRRKLAVGDELPDALDLLVVC 179
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+ +DQA+ RV +++ +S E L EL R A + R +D + +
Sbjct: 180 VESGMGLDQAVDRVCQEMKNSGPIISSEFKLLTLELRAGKARIDALRSLAERVGLDDLNS 239
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T LIQ+D +G S+G +LRV R +R AE+KAA + L +P++ F LP L +
Sbjct: 240 LTSLLIQADAFGISVGRTLRVYSDAMRVKRSQRAEEKAAKMPVLLLLPLVAFILPTLFVA 299
Query: 314 IIGPAILSIIDTMKD 328
I+GPA++ +D
Sbjct: 300 ILGPAVIMSMDMFLK 314
>gi|299532601|ref|ZP_07045990.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719404|gb|EFI60372.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 303
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 78/312 (25%), Positives = 139/312 (44%), Gaps = 18/312 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + L + E+R++S+ S
Sbjct: 1 MLIVALLTFTALMLAAGALFFWATPTVAERRLQSLT---------------PTSQDKGWT 45
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + F + + + + AG R E + + V+ ++P+ LG+
Sbjct: 46 ETVVKLVGPFAHLSSPTKDIDATPLRLRFLNAGIRHESAPLLYFGVKTLLPL---SLGLA 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ R+ ++ V P++ + + +R+ I +PDA DL+L+C
Sbjct: 103 VYSLMLTASKADSTQRLLFPLVAALVACYLPNLVLRWMALRRKREIFENFPDAADLMLVC 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D AL +V E+I +S L+EE+ T E+ R+ A N RT +D +
Sbjct: 163 VEAGMGLDAALGKVTEEIRIKSEALAEELHWTNLEMRAGSTREKALRNLAARTGVDEIHT 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T L Q+DR+GTSIG+SLRV + R +R M AE+ AA + K+ P++ P +I+V
Sbjct: 223 FTAMLTQADRFGTSIGESLRVFSDDLRHKRQMRAEELAAKIPTKMLFPLVTCIFPAIIMV 282
Query: 314 IIGPAILSIIDT 325
++GPAI+ +
Sbjct: 283 VLGPAIIRVARM 294
>gi|82703469|ref|YP_413035.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411534|gb|ABB75643.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 313
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 75/318 (23%), Positives = 144/318 (45%), Gaps = 12/318 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
++A +++ + V + +L + R++ VA S + A
Sbjct: 1 MTPVQIAYLAVIFIAVAGAAFGV-MRALAPRPTKTRLEQVA---------AGNSPSQQKA 50
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
K + + AG+ + + + + +
Sbjct: 51 GDGWERTMVNLAGPLAKLALPSEGWETSVLRTRFMHAGYHARSVPMVYFAAKTGLALALP 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++++ LE + A++ + G+ P++ + LV +R+ + ++PDA+D
Sbjct: 111 AIFLLYVGI--GRLELDVNAALFALLSLAAFGYYLPNLVLGRLVLQRKRELFESFPDAID 168
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ +CVE+G+ +D A+ RVAE++ +S L+ E+ L EL R+ A N RT +
Sbjct: 169 LMTVCVEAGLGLDAAMVRVAEEMRLRSKALASELHLVSLELRAGRTREQALRNLAMRTGV 228
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + L+Q+DR+GTS+ SLRV R+ R + AE+ AA + KL P+I F P
Sbjct: 229 EEIEALVSMLVQADRFGTSVAASLRVHSDTLRTTRRLRAEEAAAKIALKLLFPLIFFIFP 288
Query: 309 VLILVIIGPAILSIIDTM 326
L+LV++GPA ++I +
Sbjct: 289 SLLLVLMGPAFINIYRVL 306
>gi|294140782|ref|YP_003556760.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
gi|293327251|dbj|BAJ01982.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
Length = 322
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 154/322 (47%), Gaps = 18/322 (5%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGS---GELEKRMKSVAVEREILRKQQITSLQKD 66
D + + A+ ++ + A+ + L + L KR+KS+ T +
Sbjct: 14 DPSHVKWAVYAMAAVAGITLAISLSFLITGIYSPLRKRLKSIN----------KTDAEHH 63
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ + + T + +K L L ++ L AG SE +L + VRL++ +I
Sbjct: 64 ISHTDVNTTIEHGIGRAARKTPLN--LSNDETRRLLIHAGLHSENALAVFSSVRLILLLI 121
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ + E + V V L+ + PS+ + NL +R ++ +PDA
Sbjct: 122 ---SASLSVLILSMFPEISGMMSVYVVALLVGGAYLLPSMVLQNLASRRMKELRAGFPDA 178
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL++C E+G+ + AL+RVA ++ V L+ E+ L +++ +VA + F +RT
Sbjct: 179 LDLLVVCCEAGLGLLAALQRVANELAISHVSLASELDLVCSKVRAGLTIKVALQEFTDRT 238
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D ++ A+ QS R GT I +LRV E R +RL EAE++AA L K+ PM++
Sbjct: 239 GLDDIKGLNSAISQSIRLGTGIAATLRVFSDEYRDKRLQEAEEQAAKLAVKMIFPMMLGI 298
Query: 307 LPVLILVIIGPAILSIIDTMKD 328
P +V +GPA+L ++
Sbjct: 299 WPSFFIVAVGPAVLKVMKVWGQ 320
>gi|269126091|ref|YP_003299461.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268311049|gb|ACY97423.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 307
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 74/291 (25%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 37 GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL--NLKAILV 94
R VA + + R ++ L ++ L +L
Sbjct: 23 SPPRRSDRPTGVAGALHSIETEYAGKATGTVPPPSRDERLAEPLMRRLRMLAQSLSPGTG 82
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
E + +L AG ++ +L + + + G + +
Sbjct: 83 VEGLQRRLDLAGNPGAWTPERILSYKGLGLLAVGATGALV-------GSGSVPGILLGAA 135
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L GF P + + N +RQ +KR+ PD LDLL++ VE+G+ D AL RVA+
Sbjct: 136 LGSLFGFFLPDILLYNAGLRRQEELKRSLPDTLDLLVVSVEAGLGFDAALTRVAQH---T 192
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
S PL+EE+ + E+ +R A + R ++ VR AL+Q+ G SIG LR
Sbjct: 193 SGPLAEELARVLQEIRIGKSRTEALRSMGERVAVEEVRTFIAALVQASELGMSIGVVLRE 252
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
E R +R AE+ A + K+ P+++ LP LI+ ++GP +LSI+++
Sbjct: 253 QAREARLKRRQRAEEMAQKVPVKVMFPVVLCILPALIITVVGPGVLSIMES 303
>gi|300704935|ref|YP_003746538.1| tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
gi|299072599|emb|CBJ43949.1| Tad secretion system, secretion accessory protein [Ralstonia
solanacearum CFBP2957]
Length = 314
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/319 (23%), Positives = 150/319 (47%), Gaps = 11/319 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + T + IF + + L L++R+ + ++ ++
Sbjct: 1 MQIAQTVLLAGTFIIIFGAVLT-ALTILRPSALQRRLGQID--------REAPGRVQEET 51
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + + K K + ++ + AG+R+ ++ I ++ ++
Sbjct: 52 PHDWLRKIGQIAKPLAKASLPKDGWENSDLRARFVHAGWRAPEAIAIYFGIKTLLAAGLP 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + + ++ +GF P+V + +++RQ I A+PD+LD
Sbjct: 112 LLLS--LALLGRFDASHQTEYLTVLLGAALIGFYLPNVLLRLKIRRRQRDIFEAFPDSLD 169
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A+ RV E++ ++EE L EL R+ A N RT +
Sbjct: 170 LIMVCVEAGLGLDAAVLRVVEEMRTARPAMAEEYELLTLELRAGLAREKALRNLAARTGV 229
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V LIQ+DR+GTS+ +SLRV R++R M AE++AA +G K+ P+I P
Sbjct: 230 EDVSMLVAMLIQADRFGTSVAESLRVHSDMLRTKRHMLAEERAAKIGTKILFPLIFCIFP 289
Query: 309 VLILVIIGPAILSIIDTMK 327
L +V++GPA + ++ ++
Sbjct: 290 SLFVVLLGPAAIQVVGALR 308
>gi|225174956|ref|ZP_03728953.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169596|gb|EEG78393.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 306
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 74/312 (23%), Positives = 143/312 (45%), Gaps = 12/312 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V + ++ ++ E+ +R+ + R + + + R+ T
Sbjct: 4 LVNLLVFITAVLMVMLAATSLGRKHEVMERLGQI---RNMDTRPSEDDIFHRPFRERVIT 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ N + L I N+ L AG ++N LL ++++ I +LG+ +
Sbjct: 61 PFFHNAGNALGNLAPSEIRQ--NMEKNLIYAGHPWNLTVNTLLGLQVLFGIGLPVLGLFF 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ ++P + ++L P+ + +RQ I+R+ PD LDLLL+ V
Sbjct: 119 LGIVAPEHQFPGLFALLLLVLGF----MMPNTIVKRKATERQKEIQRSLPDMLDLLLVSV 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G++ D AL++VA+ + G LS E+ + E+ R A + NRT + +
Sbjct: 175 DAGLAFDMALKKVADKMPG---ELSREIGKALDEIRMGKTRIEALRSMANRTGVPDISTF 231
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+IQ+++ G++I +L V + R R M AE++A K+ P++ F P L +V+
Sbjct: 232 ISAVIQAEQLGSNIAKTLDVQANTMRQRRRMRAEEEAMRAPIKMLFPLVFFIFPALFVVL 291
Query: 315 IGPAILSIIDTM 326
+GPA + I+ T
Sbjct: 292 LGPAGIRIVQTF 303
>gi|87310969|ref|ZP_01093094.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
gi|87286259|gb|EAQ78168.1| probable integral membrane protein [Blastopirellula marina DSM
3645]
Length = 288
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 117/244 (47%), Gaps = 4/244 (1%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
+L +L GF S ++++ ++ R ++ ++ + L
Sbjct: 34 IEMRLLPNEEESRTYYTRRLVLGGFHSPTAISLFMLAR----LLLMVCPVFIALAIALLG 89
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+PF + + +G++G P +W+ + Q+RQ ++ + PD +DL++ C+E G+ +
Sbjct: 90 IFPFHTTILVGVCLGFIGILIPELWLRSCTQQRQKRLRESLPDFVDLVVTCLEGGMGAAE 149
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+ V +++ LS E+ L + + + +F RT ++ VR + L S
Sbjct: 150 AISHVHQELTSTHADLSYELGLVARDGTLGISLDKSFRRMAERTGVEEVRTLSTFLEHSQ 209
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R+G+++G+++ L R +R AE++A K+ +P ++F P + +V+ GPA + I
Sbjct: 210 RFGSAMGEAMHELSDMLRYQREQRAEERAQQASVKILIPTLLFIFPTIFVVLAGPAAIQI 269
Query: 323 IDTM 326
+
Sbjct: 270 SGKL 273
>gi|51245380|ref|YP_065264.1| hypothetical protein DP1528 [Desulfotalea psychrophila LSv54]
gi|50876417|emb|CAG36257.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
Length = 283
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 3/223 (1%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+ AG SL ++R + ++ L+L I + + + I G G+
Sbjct: 60 QRAGIYDSTSLRSYQLLRYFLLVLPLLLLTI---SHVVGFRTFTERLLAFAIFAGIFGYF 116
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + R+ + R +PDA+DLL++CVE+G+ ID A+RRVA++I S L++E
Sbjct: 117 LPVFRLKIRGHYRRKELDRTFPDAIDLLMVCVEAGMGIDSAIRRVAQEIHITSPELAKEF 176
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ EL R +N RT + + N LIQ+ +YGT + ++LR+ E R +
Sbjct: 177 KILSLELKTGKPRNECLKNLAKRTNLRDIDNLVSLLIQAQKYGTGVANALRIHAEEMRQK 236
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R E+ AA L KL +P+I F P L LVI+GPA++ +
Sbjct: 237 RYSRLEEMAAKLPVKLVIPLIFFIFPALFLVILGPAMIRVFRV 279
>gi|253701804|ref|YP_003022993.1| type II secretion system protein [Geobacter sp. M21]
gi|251776654|gb|ACT19235.1| type II secretion system protein [Geobacter sp. M21]
Length = 302
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/317 (23%), Positives = 143/317 (45%), Gaps = 16/317 (5%)
Query: 12 TELAVAITTAVSIFSLIYAV-VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + VS+ + + + +R++ + + S
Sbjct: 1 MLYLLVFSVFVSVLLVSAILCYYAFFSKSAVAQRLEEFFPRPQSAKTGMAPSG------- 53
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ L +K+ L + + L AAGFR + + L +L++ + ++
Sbjct: 54 ----TWAYKLARIGEKVKLPQKEESKYVKA-LVAAGFR-KDAFYRFLGAKLLLAGVLPLI 107
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + + + A G +G+ AP+ W+ V+ RQ I PD LDL+
Sbjct: 108 YLLAV--ATPTRTFFTTQTLLATAFFGIIGYLAPTYWLHLKVKARQLEIFHTLPDILDLV 165
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+CVE+G+S+D AL R E + PL+ E+ E+ R + ++ RT+++
Sbjct: 166 TLCVEAGLSMDAALIRTTETPQFRDNPLAIEIRQVTMEVRAGKPRVESLKDMALRTRVED 225
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + T + Q++R+GTS+ +LR E R++R AE+ AA KL P+I+F P L
Sbjct: 226 IGSFTTMVTQAERFGTSLSHALRTFSDELRTKRRQTAEEAAAKTTIKLIFPLIMFIFPAL 285
Query: 311 ILVIIGPAILSIIDTMK 327
++VI+GPA++ I +
Sbjct: 286 LVVILGPAVVQISRIFQ 302
>gi|197118215|ref|YP_002138642.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197087575|gb|ACH38846.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 304
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/314 (21%), Positives = 134/314 (42%), Gaps = 13/314 (4%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ SIF+ + ++ L + +E +R++ + + +
Sbjct: 1 MLALITASIFASVTVLIGVLLYP---------LLSRQESVRQRLTKLMPQQEEEAPPLVP 51
Query: 76 DSKSLRNFVKKLNLKAILVDENIV--NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + +L +K + ++ + A + ++ + L +L + FL+
Sbjct: 52 TPTKWQRTLSELGIKQQIRPADLRTYREAVTAAGFKKEAVYVFLGAKLF--LAFLLPAGY 109
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + G+ P++W+ R+++I A PD LDLL +C
Sbjct: 110 LMLFALPRGTMASSISILVATACAVAGYLLPTIWLDRRAGVRKTAIFHALPDVLDLLTVC 169
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D A+ + AE+ ++ PL E I E+ R A + RT +D ++
Sbjct: 170 VEAGLGLDAAIIKTAENFQEKNCPLIAEFNAVILEIRAGRPRSEALKGLAERTTLDDIKA 229
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
LIQ+++ GTS+G +LR+ R++R AE++AA K+ P+ P ++V
Sbjct: 230 LVSMLIQTEKLGTSLGKTLRIYSDSLRTKRKQLAEERAAKTAVKMLFPLTFCVFPAFMVV 289
Query: 314 IIGPAILSIIDTMK 327
++ PA I K
Sbjct: 290 LLVPAFFRIFQMFK 303
>gi|320101695|ref|YP_004177286.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319748977|gb|ADV60737.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 318
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 72/320 (22%), Positives = 144/320 (45%), Gaps = 6/320 (1%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + V++ + V + ++ + + + R+ + + + ++
Sbjct: 4 LSPEMMTTVVQLVVALCGALAVVGLMTMLAPKEKDRLGELLKRDKAGPSRLAE--ERAKK 61
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + + + K + + I L AGFRS +++I + V+ +IF
Sbjct: 62 KNEEVKKKIAKVVEEIGKNSAASEKDMSQIKLDLINAGFRSPNAVSIFMGVK----LIFF 117
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + + + +G APS ++ L +RQ I PDALD
Sbjct: 118 LTSVAVVVPLVYTNYGFTTTGILYMAIGAAIGMIAPSFFLGYLKSRRQEQIFLTLPDALD 177
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++CVE+G+ +D A R+A ++ + L EE + ++ R+ + RT +
Sbjct: 178 LMVVCVEAGLGLDAAFNRIASELQTAAPVLCEEFAIANFQIRMGRPRREVLRDLGVRTGV 237
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R LIQ++R+G+SI +LRV R +R AE+KAA KL P+++F P
Sbjct: 238 ADLRALAAVLIQAERFGSSIASALRVQSDSMRIKRRQIAEEKAAKTAVKLLFPLVLFIFP 297
Query: 309 VLILVIIGPAILSIIDTMKD 328
+ +V++GPA +SI +
Sbjct: 298 GIFVVLVGPAAISIKQNLVQ 317
>gi|197117442|ref|YP_002137869.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197086802|gb|ACH38073.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 302
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 75/317 (23%), Positives = 145/317 (45%), Gaps = 20/317 (6%)
Query: 16 VAITTAVSIFSLIYAVV-----IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ S+F+ + V + +R++ + + + S
Sbjct: 1 MLYLVVFSVFASVLLVSAILCHYAFFSKSAVAQRLEEFFPRPQSAKTGMVPSG------- 53
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ L +K+ L + + L AAGFR + ++ L +L++ + ++
Sbjct: 54 ----TWAYKLAKIGEKVKLPQKEESKYVKA-LVAAGFR-KDAVYRFLGAKLLLAGVLPLI 107
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + + + + A +G+ AP+ W+ V+ RQ I PD LDL+
Sbjct: 108 CLLAVATTSR--TFFTTQTLLATAFFSIIGYLAPTYWLHLKVKARQLEIFHPLPDILDLV 165
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+CVE+G+SID AL R E + PL+ E+ E+ R + ++ RT+++
Sbjct: 166 TLCVEAGLSIDAALIRTTETPQFRDNPLAIEIRQVTMEVRAGKPRVESLKDMAVRTRVED 225
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + T + Q++R+GTS+ +LR E R++R AE+ AA KL P+I+F P L
Sbjct: 226 IGSFTTMVAQAERFGTSLSHALRTFSDELRTKRRQMAEEAAAKTTIKLIFPLIMFIFPAL 285
Query: 311 ILVIIGPAILSIIDTMK 327
++VI+GPA++ + +
Sbjct: 286 LVVILGPAVVKLGKIFQ 302
>gi|307294432|ref|ZP_07574276.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880583|gb|EFN11800.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 322
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 73/319 (22%), Positives = 147/319 (46%), Gaps = 8/319 (2%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + ++I +L++ + + + + R+ V + Q ++
Sbjct: 4 TAIMIQLRPFILGLLFIAIVALVFGLSEIVMRNARVRSRLDIVGDAGGAAQGSQTLRGER 63
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ + + + + N + + +L AAG+ S + + RLV+
Sbjct: 64 NDGEWKKLVDRIEKMGISLVDTN------NAGLRRRLIAAGYMSPEAPKLFTFFRLVLTF 117
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ ++ + L+ +G P+++IS +RQ +I +PD
Sbjct: 118 ALPAIFVVMALSKAEPP--SALKLYFIASLLAVLGLYLPNLFISAKAARRQEAIVHGFPD 175
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDL+L+CVE+G+ ++ A+ RV ++ +S + + EL +RQ A +
Sbjct: 176 ALDLMLVCVEAGLGLEAAMDRVGRELALSHPLVSAALGKVVLELRAGRSRQDALRRMADD 235
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+D +R+ LIQSD+ G+S+G +LR+ +E R +R M AE+KA L L+VP++
Sbjct: 236 VDVDEIRSFATLLIQSDQLGSSVGQTLRIYAAEMREKRRMRAEEKAHRLPVLLSVPLVAC 295
Query: 306 FLPVLILVIIGPAILSIID 324
LPV+I V++ PA++ ++
Sbjct: 296 MLPVMIGVLMLPAVVRVVR 314
>gi|103488240|ref|YP_617801.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98978317|gb|ABF54468.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 326
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/316 (25%), Positives = 146/316 (46%), Gaps = 7/316 (2%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L + V + SL+Y V L + R+ E L A+
Sbjct: 11 LRLGFLVLLFVIVSSLVYFGVRLILSRRVILSRL-----ESPALPGSHRDDSDGLRAADV 65
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+K + + + ++ AAG+RS ++ I ++RL +IF +
Sbjct: 66 RSGAWAKLAATIEQSGLSLGDSNPQGLRRRMLAAGYRSPHAPKIYTLLRL--ALIFALPS 123
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + + +G PS++++ +R+ I +PD LDL+L
Sbjct: 124 ALVLPQLLSETPVDLFMLYLQGAGLALMGLVIPSLFLTAKADRRRQEILNGFPDCLDLML 183
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVE+G+ ++ AL RV ++ ++E++ T EL +R+ A +R+ +D +
Sbjct: 184 VCVEAGMGLEAALDRVGREMTLSHPLVAEQISQTTLELRAGASREEALRALADRSGVDEI 243
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R LIQSD+ G+SI +LR+ +E R +R M AE+KA L L++P++ LPV+I
Sbjct: 244 RAFATLLIQSDKLGSSIATTLRIYAAEMREKRRMRAEEKAHRLPVLLSIPLVACMLPVMI 303
Query: 312 LVIIGPAILSIIDTMK 327
V++ PA++ +I +
Sbjct: 304 GVLMLPAVIRVIRDIA 319
>gi|167840869|ref|ZP_02467553.1| hypothetical protein Bpse38_29619 [Burkholderia thailandensis
MSMB43]
Length = 279
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 81/261 (31%), Positives = 133/261 (50%), Gaps = 3/261 (1%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
A + + + +L+L + + +L AG+RS + ++ + V+ +
Sbjct: 14 PAPPAVWVEKLAEISQPISRLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLAL 73
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ F L V+LIG GF P+ +S ++ RQ I +PD
Sbjct: 74 TLPAVA--MPFMIGTALGDNPYAVSAMVLLIGGFGFYLPNAMLSRHIRLRQRKIIEDFPD 131
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L + E+ + A N R
Sbjct: 132 ALDLLTVCVEAGLGLDAALTKVADELRLRSPIVADELGLMLLEIRSGFAKDAALRNLALR 191
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + V LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I
Sbjct: 192 TGAEDVDAFCAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFC 251
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I T+
Sbjct: 252 IFPALLTVLLGPAFIHIYRTL 272
>gi|325111219|ref|YP_004272287.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324971487|gb|ADY62265.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 461
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 56/249 (22%), Positives = 120/249 (48%), Gaps = 4/249 (1%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + ++ + + +L AG+ + ++ L VR + ++ L++ + +
Sbjct: 197 GTATPALAAMLPESESRRDALKQELVEAGYYNPHAYENLAAVRYLGLMLPLLIFGVLLVF 256
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
LE + + +I+ +G+ P + + KR+ I++A PD +DLL +CV G
Sbjct: 257 GPPQLE---PVMLVLMIVGAVLGWSIPRLLVRQRAAKRRREIEQALPDVIDLLNMCVSQG 313
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+++ AL RV+ +I ++EE+ + + + + A N R + + + T
Sbjct: 314 MTLRPALARVSWEISDTYPAMAEELRIVAEQANLG-TLEHALNNMNERVDVPELHSLTTL 372
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LIQ++R GT++ DSL R+ A++KA + KL P ++ +P + ++GP
Sbjct: 373 LIQTERMGTNVSDSLTEYSDGMRATLQQRADQKANAATFKLLFPTVLCLMPAVYFFLLGP 432
Query: 318 AILSIIDTM 326
A++ + D
Sbjct: 433 AVVELSDFF 441
>gi|188586923|ref|YP_001918468.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351610|gb|ACB85880.1| type II secretion system protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 317
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 68/320 (21%), Positives = 137/320 (42%), Gaps = 18/320 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L + +T + + + E + R+ + + + L
Sbjct: 5 LMLYLTITACMTGIFLNMYQFLFRKRIETKNRLSKLNELTDGSAGSGFEHTPRTPLQKAL 64
Query: 73 RTRDSKSL------RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ + + L V + +AG + LL ++ +
Sbjct: 65 ALPVHRRVVLPLFHKLTAFLEKLLPHKVFTGFKKDIISAGLSQHLNATELLAAYFLIICL 124
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L++ + ++ V +++ +GF P +W+S+ V R++ I+RA P+
Sbjct: 125 GLVMAVFFVTFLST--------PVWTGMVLVILGFIGPKLWLSSKVNTRKNEIQRALPEF 176
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL + VE+G+ + +L++VAE + PL+ E+ E+S +R+ A + R
Sbjct: 177 LDLLTVSVEAGLGFESSLKKVAE---EGTGPLAVEIKRVTQEISMGKSRKEALIDLKERI 233
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + A+IQ+++ G I L+V E R +R AE++A KL +P+I+F
Sbjct: 234 DLQDLSTFINAIIQAEQLGVGISRVLKVESKEFRRKRRQRAEEQAMKAPVKLLIPLILFI 293
Query: 307 LPVLILVIIGPAILSIIDTM 326
P + ++++GPA L I+D +
Sbjct: 294 FPTIFIILLGPAALRIMDNL 313
>gi|296156494|ref|ZP_06839332.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893093|gb|EFG72873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 318
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 79/305 (25%), Positives = 144/305 (47%), Gaps = 2/305 (0%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+++ +++ +V + R V E L + + S A +K
Sbjct: 6 IAMLGVMFLIVFGAALKAMTLLRPDPVQRRIEELAQPGVASEADAGAEKNWVETVTKVSE 65
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ K + + AG R+ + I + V+ + + +I+ +
Sbjct: 66 RVARLSLPKEDWDKSALRLRFANAGIRTPSAPAIYFAAKTVLALSLPAVALIFFGNAFEA 125
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + V+ +GF P++ ++ LV+ RQ + PDALDL+ +CVE+G+ +D
Sbjct: 126 DQR--IYLLLTVLAASALGFYLPNLVMTRLVESRQRKLFEDLPDALDLMTVCVEAGLGLD 183
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ RV ++IG +S L +E + + EL R A N RT ++ + LIQ+
Sbjct: 184 AAMMRVTQEIGVKSHALKDEFDMVLLELRAGSGRDKALRNLSLRTGVEDIDTLAAMLIQA 243
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
DR+GTS+GDSLRV R++R + AE+ AA + KL P++ F P L+ V++GP+ +
Sbjct: 244 DRFGTSVGDSLRVYTDNLRTKRRLRAEELAAEIALKLLFPLMFFIFPTLLAVLVGPSAIQ 303
Query: 322 IIDTM 326
I+ +
Sbjct: 304 IVRQL 308
>gi|149178503|ref|ZP_01857091.1| type II secretion system protein [Planctomyces maris DSM 8797]
gi|148842618|gb|EDL56993.1| type II secretion system protein [Planctomyces maris DSM 8797]
Length = 334
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 58/312 (18%), Positives = 122/312 (39%), Gaps = 13/312 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V+ F L+ V+ + R + S + ++ +T
Sbjct: 1 MFIELVTVATFLLVCFVIFLIGDAISAGHRT-----------GRNKNSKYDERGANYYKT 49
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + ++ I L+ AG+ +L L R + ++ +++G
Sbjct: 50 SKVGVFSRALAGVIPQSSQEISKIELDLKRAGYYRSTALVEYLATR-NMLVVLVLIGTGV 108
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
++ + A +LI G+ P + + N +R I+R PDALDL+++C+
Sbjct: 109 GCVLADPGSNLPEIILIAGLLIAGAGYGLPRIVLQNQANRRVHRIQRGLPDALDLVMMCL 168
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G+ + AL RV +++ ++ E + + A + F R V
Sbjct: 169 TGGVPLRTALERVTDEVRFSHPDIAVEFEIIRRHADAN-SMADALKQFAKRIDAPDVNAL 227
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + Q++R GT++ +L R + AE+ ++ KL P+I P + ++
Sbjct: 228 SLMISQTERLGTNVSTALIDFADGVRRKYRQRAEENSSKTSIKLLFPIIFCMAPPIYILF 287
Query: 315 IGPAILSIIDTM 326
GPA+L + + +
Sbjct: 288 FGPAVLELRNFL 299
>gi|167566943|ref|ZP_02359859.1| type II secretion system protein [Burkholderia oklahomensis EO147]
gi|167574012|ref|ZP_02366886.1| type II secretion system protein [Burkholderia oklahomensis C6786]
Length = 318
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 82/321 (25%), Positives = 149/321 (46%), Gaps = 10/321 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + T+L + + + + A G A E + + +
Sbjct: 1 MENLNVTQLLLLFGLFAIVVAGVMAAWFAFAPRG--------FARRLEQIGGGAVAAGDG 52
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ + + ++ R K K+ + + +L AG+RS + + + V+ +
Sbjct: 53 PAPQTVWIEKLAEISRPISKLSLPKSGWENSPLRLRLINAGWRSASAAPLYFAAKTVLAL 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
F L + ++ IG GF P+ +S + RQ I +PD
Sbjct: 113 ALPA--AAMPFLIGTELADSPYILSVMLVTIGAFGFYLPNAVLSRRIASRQRVIVEDFPD 170
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +C+E+G+ +D L +VA+++ +S +++E+ L + E+ +++ A N R
Sbjct: 171 ALDLLTVCIEAGLGLDAGLMKVADELRLRSPVVADELGLMLLEMRSGFSKETALRNLALR 230
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + + + LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I
Sbjct: 231 TGAEDIDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFC 290
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I T+
Sbjct: 291 IFPALLTVLLGPAFIHIYRTL 311
>gi|167579124|ref|ZP_02371998.1| type II secretion system protein [Burkholderia thailandensis TXDOH]
Length = 319
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 150/322 (46%), Gaps = 11/322 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + + + + + A + G +A E + +
Sbjct: 1 MENLNVMHILLLLGLFAIVVASVMATWLAFAPRG--------LARRLEQIGGAGAVAAGD 52
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
A + + + KL+L + + +L AG+RS + ++ + V+
Sbjct: 53 SPAPPAVWVEKLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPSAAHLYFAAKTVLA 112
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ F + + ++LIG GF P+ ++ + RQ I +P
Sbjct: 113 LALPA--AAMPFLFGTAIADSPYSVSAMLVLIGAFGFYLPNAMLARRIASRQRMIIEDFP 170
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N
Sbjct: 171 DALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKEAALRNLAL 230
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT + V + LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I
Sbjct: 231 RTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIF 290
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I T+
Sbjct: 291 CIFPALLTVLLGPAFIHIYRTL 312
>gi|317123667|ref|YP_004097779.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587755|gb|ADU47052.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 306
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 17/317 (5%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A+ AV++F L+ A+ S G + K + + + KD
Sbjct: 1 MASVYIGVGLIAVAVFGLVLALSFGSGGPTGVAKSLAMIEGVVTQRSAVKTELDAKDRLV 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R + L + + L AG S ++ ++ + V +I L+
Sbjct: 61 EPIFNRAQRIA------TVLSPQGTSDRLARGLERAGNPSPWTAERVMGAKGVALLIGLL 114
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG+ + + + G F P++ + N +RQ + +ALD+
Sbjct: 115 LGVAYGGFSLR--------GFVFALGFGGAAFWLPNLLVYNAALRRQEQVATGLAEALDM 166
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L +CVE+G D AL +VA P+S E ++E+ +R AF +R +
Sbjct: 167 LTVCVEAGQGFDAALVQVAR---STDGPISGEFARVLSEVQIGKSRSEAFAGLGDRVSLS 223
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V+N A+IQ+D+ G I LR + R R AE+KA + K+ P+++ P
Sbjct: 224 DVKNFVSAIIQADKLGIPIASVLREQTAAMRLSRRQRAEEKAQKVTVKILFPLLLCIFPA 283
Query: 310 LILVIIGPAILSIIDTM 326
+ +VI+GP I+ +I T+
Sbjct: 284 MFVVILGPGIIRMITTL 300
>gi|167617239|ref|ZP_02385870.1| type II secretion system protein [Burkholderia thailandensis Bt4]
gi|257141112|ref|ZP_05589374.1| type II secretion system protein [Burkholderia thailandensis E264]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 149/322 (46%), Gaps = 11/322 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + + + + + A + G +A E + +
Sbjct: 1 MENLNVMHILLLLGLFAIVVASVMATWLAFAPRG--------LARRLEQIGGAGAVAAGD 52
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
A + + + KL+L + + +L AG+RS + ++ + V+
Sbjct: 53 SPAPPAVWVEKLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPSAAHLYFAAKTVLA 112
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ F + ++LIG GF P+ ++ + RQ I +P
Sbjct: 113 LALPA--AAMPFLIGTAIADSPYSVSAMLVLIGAFGFYLPNAMLARRIASRQRMIIEDFP 170
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N
Sbjct: 171 DALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKEAALRNLAL 230
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT + V + LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I
Sbjct: 231 RTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIF 290
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I T+
Sbjct: 291 CIFPALLTVLLGPAFIHIYRTL 312
>gi|197106463|ref|YP_002131840.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
gi|196479883|gb|ACG79411.1| Flp pilus assembly protein TadC [Phenylobacterium zucineum HLK1]
Length = 320
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 108/311 (34%), Positives = 161/311 (51%), Gaps = 8/311 (2%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AVA+ V+ F I AV+ + +R +S A R LR + R
Sbjct: 15 AVALAVGVANFLAILAVLRALSPKDLVRERARSHARRRNDLRAALL------QPRRGARP 68
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R R V+ L L L AG+RS ++++ L ++++ P+
Sbjct: 69 RSVGLARRLVELLKLNRDGRAGGAAALLVQAGWRSPDAMHVFLALKVLAPLALAAAAW-- 126
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ L + R+ A + G P + + N +QKR I+RA PDALDL +IC
Sbjct: 127 LLAPGVLHDDDPLRRLAATLGGAVAGLYLPRLMLKNAIQKRSLKIQRALPDALDLFVICA 186
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+S+D AL RV+ +IG + L++E+ LT EL FLP+R+ A N R VR
Sbjct: 187 EAGLSLDAALARVSREIGPAAPELADELGLTAVELGFLPDRREALLNLTRRVAAPQVRGL 246
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+Q+++YGT + +LRVL +E R R+M+AE+KAA L LTVPMI F LP L +V+
Sbjct: 247 VNTLVQTEKYGTPLAQALRVLAAEFRDTRMMKAEEKAARLPATLTVPMIAFILPPLFVVL 306
Query: 315 IGPAILSIIDT 325
IGPAI+ ++ T
Sbjct: 307 IGPAIVQVLTT 317
>gi|261252092|ref|ZP_05944665.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
gi|260935483|gb|EEX91472.1| flp pilus assembly protein TadC [Vibrio orientalis CIP 102891]
Length = 314
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 11/309 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+ LI V+I S L + L+ K + R KS
Sbjct: 17 AFFLVIVLIATVLIIFTISLLLLSSKSPLKSRLARLKDATRADTLKKGS------RLEKS 70
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
L + + E+I KL AG+ +L ++ V ++ ++ F
Sbjct: 71 LESLAPAMKSSNSKESESIRVKLMHAGYHDASALTFFYAMKGVSMVVGFLMAAGIYFFAP 130
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
++ +R A+I G P+V +S +V KRQS I+ PDALDLL++C ESG+
Sbjct: 131 EMS-----MRNIAMIGSVAFGLYCPNVVLSMMVDKRQSRIRSGIPDALDLLVVCTESGLG 185
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ ALRRVA+++ ++E+ ++S AF + RT + + L
Sbjct: 186 FNAALRRVADELTISHPDFADELDTVCVKISAGVEMSDAFNDLIKRTGLSEIAGLVTMLA 245
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R G S+ +LR + R +R E E+ AA + K+ P++IF P +V IGP++
Sbjct: 246 HASRIGGSLSQTLREYTEDYRDKRNQEIEEIAAKIPTKMIFPLLIFIWPCFFIVAIGPSM 305
Query: 320 LSIIDTMKD 328
L TM +
Sbjct: 306 LLFTSTMGN 314
>gi|221067370|ref|ZP_03543475.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220712393|gb|EED67761.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 303
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/312 (24%), Positives = 142/312 (45%), Gaps = 19/312 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L VA+ T S+ A+ E+R++ ++ S
Sbjct: 2 LIVALLTFASLMLAAGALFFWVT-PTVTEQRLQELS---------------PAPLSGSWT 45
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + F + A + + AG R E + + + ++P++ + +
Sbjct: 46 ETAVKLVGPFAHLSSPTAGSDATPLRLRFLNAGIRHENAPLLYFGAKTLLPLVMM---FL 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ ++ G V P++ + + +R+ I +PDA DL+L+C
Sbjct: 103 VYSLMLAQGTTDSLQLLLYPLVTGLVACYLPNLVLRWMAARRKREIFENFPDAADLMLVC 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D AL +V +I +S L++E+ T E+ R+ + N RT +D +
Sbjct: 163 VEAGMGLDAALGKVTAEIRIKSEALAQELHWTNLEMRAGSTREKSLRNLAARTGVDEIHA 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T L Q+DR+GTSIGDS+RV + R +R M AE+ AA + K+ +P++ P +++V
Sbjct: 223 FTAMLTQADRFGTSIGDSIRVFSDDLRHKRQMRAEELAAKIPTKMLLPLVTCIFPAIVMV 282
Query: 314 IIGPAILSIIDT 325
++GPAI+ ++
Sbjct: 283 VLGPAIIRLLRM 294
>gi|53723215|ref|YP_112200.1| hypothetical protein BPSS2198 [Burkholderia pseudomallei K96243]
gi|76819357|ref|YP_336475.1| type II secretion system protein [Burkholderia pseudomallei 1710b]
gi|126455503|ref|YP_001076997.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167744183|ref|ZP_02416957.1| type II secretion system protein [Burkholderia pseudomallei 14]
gi|167821382|ref|ZP_02453062.1| type II secretion system protein [Burkholderia pseudomallei 91]
gi|167829724|ref|ZP_02461195.1| type II secretion system protein [Burkholderia pseudomallei 9]
gi|167851191|ref|ZP_02476699.1| type II secretion system protein [Burkholderia pseudomallei B7210]
gi|167899821|ref|ZP_02487222.1| type II secretion system protein [Burkholderia pseudomallei 7894]
gi|167916485|ref|ZP_02503576.1| type II secretion system protein [Burkholderia pseudomallei 112]
gi|167924342|ref|ZP_02511433.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
gi|217424204|ref|ZP_03455703.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|226194113|ref|ZP_03789713.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237510430|ref|ZP_04523145.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254182575|ref|ZP_04889169.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|254187127|ref|ZP_04893642.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254192523|ref|ZP_04898962.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|254296491|ref|ZP_04963947.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52213629|emb|CAH39683.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|76583830|gb|ABA53304.1| Bacterial type II secretion system protein, probably involved in
Flp pilus synthesis [Burkholderia pseudomallei 1710b]
gi|126229271|gb|ABN92684.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|157806389|gb|EDO83559.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934810|gb|EDO90480.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|169649281|gb|EDS81974.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|184213110|gb|EDU10153.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|217392669|gb|EEC32692.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|225933806|gb|EEH29793.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002635|gb|EEP52059.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 319
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 11/322 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + + + + + A + G +A E + +
Sbjct: 1 MENLNVMHILLLLGLFAIVVAGVMATWLAFAPRG--------LARRLEQIGGAGAVAAGD 52
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
A + + + KL+L + + +L AG+RS + ++ + V+
Sbjct: 53 GRAPPAVWIEKLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLA 112
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + ++LIG GF P+ ++ + RQ I +P
Sbjct: 113 LALPAAAM--PLLIGTAIADSPYSVSAMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFP 170
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N
Sbjct: 171 DALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLAL 230
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT + V + LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I
Sbjct: 231 RTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIF 290
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I T+
Sbjct: 291 CIFPALLTVLLGPAFIHIYRTL 312
>gi|332798625|ref|YP_004460124.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696360|gb|AEE90817.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 307
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 76/314 (24%), Positives = 132/314 (42%), Gaps = 13/314 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A + A+ ++ LIY +++R+ ++ Q R
Sbjct: 4 LFAWSGALLVYCLIYMTFTTIFSKKITMQQRLDEMSKAGNR---QVENDELNKPFEERFV 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +F L +E + +L+ A R L+ + ++ ++
Sbjct: 61 KPTLGRIISFFAVLIPVNAASEERLNQQLKQAEIRMG--AREYQAAVLLFTFVCVVGMVL 118
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ +L LR+ +L Y G + + KR+++I PD LDLL +
Sbjct: 119 Y----STMLGLSVSLRILFGMLGIYAGLVLSRFDLKRNIIKRKTAIYHQLPDTLDLLSVS 174
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G+ DQAL V E + G PL +E+ T E+S R+ A E R + D +
Sbjct: 175 VSAGLGFDQALSYVVEHMEG---PLIQELDTTQREISMGIPRKEALERLAARCECDEIYI 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ Q+D G SI + + + R E++A L K+ VPM++F LPV ++
Sbjct: 232 FVGAINQADELGASIKNVMETQAAAIRLTHKQNVEEQAQKLSVKMMVPMVLFILPVTFII 291
Query: 314 IIGPAILSIIDTMK 327
I+GPAI S+I +K
Sbjct: 292 ILGPAIPSVISALK 305
>gi|149175458|ref|ZP_01854079.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
gi|148845726|gb|EDL60068.1| hypothetical protein PM8797T_18379 [Planctomyces maris DSM 8797]
Length = 370
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/249 (21%), Positives = 115/249 (46%), Gaps = 4/249 (1%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
S + ++ ++ +L+AAG+ ++L+ +R + + L+ +
Sbjct: 105 GSATPALAEMMPESEERRAKTKKELQAAGYYQPHALHNFSAIRFISILGTLLFFGGVLLL 164
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ E P + + V + + P + +++ R+S I++ PD LD+L +CV G
Sbjct: 165 APERFEIPILVAMLIVP---ILVWAVPFLIVTSKASDRRSEIEQGIPDMLDMLNMCVSQG 221
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+++ AL+++ ++ L+ E+ + I + S A NF R + V +
Sbjct: 222 MTVPHALKKIISELAKVYPALAHELKIVIEQSSIG-TFSQALSNFSKRIDVPEVHSFAAL 280
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LIQ+D+ GT++ +L+ R A++KA KL P ++ +P + + ++GP
Sbjct: 281 LIQTDQMGTNVTSALQEYSDNMRESLSQRADEKANKATFKLLFPTVLCLMPAIYIFLLGP 340
Query: 318 AILSIIDTM 326
AI+ + D
Sbjct: 341 AIVELSDFF 349
>gi|89899611|ref|YP_522082.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89344348|gb|ABD68551.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 312
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 74/302 (24%), Positives = 140/302 (46%), Gaps = 2/302 (0%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
+ + + + + + V R+ L + + R + + R
Sbjct: 6 LAFLALIFVVVVAGVLGVSGVMRPNVARQRLAGLVADAPPRPPIQHRWLHWIADATRPIS 65
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
K + ++ + AG R+ + + ++ ++ + ++ + L+
Sbjct: 66 KLSMPEEGFEKSSLKLRFAHAGIRNANAASAFFGIKTLLTLGLPLVAFALLTLSGSPLKG 125
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L V + +G+ P++ +S+LV RQ I ++PDALDL+ +CVE+G+ + A+
Sbjct: 126 NTLLLVMLALAA--LGYYGPNLVLSHLVMVRQREIFESFPDALDLMTVCVEAGLGTEAAM 183
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
RVA+D+ +S L++EM L EL R+ A N RT ++ V + Q++R+
Sbjct: 184 MRVADDLQFKSPALADEMRLVNLELRAGAVRERALRNLAIRTGVEEVDGFVTMISQAERF 243
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
GTSI SLR+ R+ R AE+ AA + KL P+I P L++V++GPA++ I
Sbjct: 244 GTSIAASLRIHAELLRTRRRQRAEEAAAKIALKLLFPLIFCIFPSLMVVLMGPAMIQIYR 303
Query: 325 TM 326
+
Sbjct: 304 VL 305
>gi|219850073|ref|YP_002464506.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
gi|219544332|gb|ACL26070.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
Length = 311
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 72/313 (23%), Positives = 141/313 (45%), Gaps = 10/313 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I + + A++I ++ + + + + + R+
Sbjct: 1 MMEILVLTGVLVIGAALIIIAVRQMNQSRAISERLDQYTDVSLSLEELELQQPFRERVLI 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++L +++ + LK E + L+ AG S N+ + +R+ L L +
Sbjct: 61 PMFRALLSYLGRFGLKQ--NQERLRANLQMAGNPGNISPNMFIGLRM-----ALALTLAT 113
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + V + +G+ P +W+ +++R+ +I +A PDALDLL I V
Sbjct: 114 VIVPLVIGRLSLIQALAGVAIAFMIGYILPGIWLDRKIKERKKNILKALPDALDLLCISV 173
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G++ D AL+RVA+ LS E + ++ R+ A + RT ++ V+
Sbjct: 174 EAGLAFDLALQRVAQK---WDNELSHEFQRVLQDIRLGRTRREALRDMAARTGVEDVQTF 230
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+IQ+D+ G S+ LR+ + R+ R AE+ A K+ +PM+ P L +VI
Sbjct: 231 VSAVIQADQLGVSMSKILRIQSDQLRTRRRQRAEEAAQKAPVKMLIPMVFLIFPALFVVI 290
Query: 315 IGPAILSIIDTMK 327
+GPA+ I+ +
Sbjct: 291 LGPAVPRIMSALG 303
>gi|330811031|ref|YP_004355493.1| type II secretion system protein; membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379139|gb|AEA70489.1| putative type II secretion system protein; putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 321
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 81/316 (25%), Positives = 152/316 (48%), Gaps = 14/316 (4%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L VS + A+++ LG + +R ++++ + A S L
Sbjct: 19 RLLFVTVVGVSTVLAVVALMLLMLGLQDPVQR------RLALIKRGYAGNTVGQEAPSNL 72
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ L ++ L AG+RS ++ + VRL++P++ + + +
Sbjct: 73 QL----LLERVGQRFASTDQAHTSATQTLLTHAGYRSASAVQMYWAVRLMLPLLMVGVAL 128
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +++ + + AV L+ +G+ P++++ Q RQ ++ A+PDALDL+++
Sbjct: 129 LLL----PMVKVSVAIGLLAVTLVAGIGWLLPAIYVGKRKQARQGRLRAAFPDALDLMVV 184
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVESG+++ + RVAE++ V L+EE+ L A++ A + RT ++ ++
Sbjct: 185 CVESGLALPTTIERVAEEMSVSQVELAEELALVNAQIRAGITSTEALKQLAVRTGLEDIQ 244
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L QS R+GTS+ D+LR+ E R R AE+ A +G KL P+I P L
Sbjct: 245 GLVSLLAQSIRFGTSVADTLRIYADEFRDRRTQAAEEMGAKIGTKLIFPLIFCLWPSFFL 304
Query: 313 VIIGPAILSIIDTMKD 328
V IGPA++ + +
Sbjct: 305 VAIGPAMIGVFRAFGN 320
>gi|239908016|ref|YP_002954757.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239797882|dbj|BAH76871.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 281
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/270 (28%), Positives = 137/270 (50%), Gaps = 4/270 (1%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
++ + + ++ F + + + + L AG+R +L I
Sbjct: 12 SRLKDGGRPGIFGWIEGSIRRAAAWFGELVKPREAQELTKARSSLVQAGYRQPSALEIYW 71
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
++ ++ L+LG + + P Q ++ V+ + GF P + + + V+ RQ+
Sbjct: 72 GIKAGAALVGLVLGALAAMS----GKVPGQYKLFVVVGLTAAGFYIPGMILDSRVKARQT 127
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+I+++ PDALDLL++CVE+G+ +D A+ RV +++ + LS E+ L EL R+
Sbjct: 128 AIQKSLPDALDLLVVCVEAGMGLDAAIYRVCQEMSLKDPILSAELRLLTLELRAGKARRE 187
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A +N R ++ V + LIQ+D +GTSI +LRV R++R AE+ AA L K
Sbjct: 188 ALKNLSARIGLEDVGSLVAMLIQTDMFGTSIAQTLRVYADSMRTKRFQLAEELAAKLPVK 247
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L +P+I F P L++VI+GPA + I
Sbjct: 248 LLMPLIFFIFPTLLIVILGPAGIRIFQMFG 277
>gi|116623251|ref|YP_825407.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116226413|gb|ABJ85122.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 304
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/313 (23%), Positives = 126/313 (40%), Gaps = 16/313 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ A+T A+ + + + +A R + SR+
Sbjct: 1 MLEAMTAAIFVLVAGGTAWAALRAGSWRVRGVTRLAPAAGTARVRVSPGALWGRLVSRIG 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + +L AGFR + +RLV + ++
Sbjct: 61 TAL------------PTPARELPRLKRQLVRAGFRGPGAARHFQGIRLVATLGCGAGALL 108
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + F + G+ AP ++ V +R+ +I+R P+ LDL+++C
Sbjct: 109 GASQWHAASDNVF----WSAAAGIAFGYLAPMQYVQFCVGRRRKAIERGLPNTLDLMVVC 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+ IDQ +VA+++ + E + EL R A N RT +D V+
Sbjct: 165 VESGLGIDQTTLQVAKELHWAHPEICAEFTVMNLELRAGIRRAEALHNLAERTGVDDVKK 224
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L+Q+DR+GTSI SLR R+ AE++A+ L KL P+ LP L +V
Sbjct: 225 LVAVLVQTDRFGTSIAQSLRGHAEYLRTMARQRAEERASKLAVKLVFPIFFCVLPSLFVV 284
Query: 314 IIGPAILSIIDTM 326
IGP I ++ +
Sbjct: 285 TIGPVITRLVREL 297
>gi|126443620|ref|YP_001064084.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|167908138|ref|ZP_02495343.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
gi|126223111|gb|ABN86616.1| type II secretion system protein [Burkholderia pseudomallei 668]
Length = 319
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 11/322 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + + + + + A + G +A E + +
Sbjct: 1 MENLNVMHILLLLGLFAIVVAGVMATWLAFAPRG--------LARRLEQIGGAGAVAAGD 52
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
A + + + KL+L + + +L AG+RS + ++ + V+
Sbjct: 53 GRAPPAVWIEKLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLA 112
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + ++LIG GF P+ ++ + RQ I +P
Sbjct: 113 LALPAAAM--PLLIGTAIADSPYSVSAMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFP 170
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N
Sbjct: 171 DALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLAL 230
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT + V + LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I
Sbjct: 231 RTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIF 290
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I T+
Sbjct: 291 CIFPALLTVLLGPAFIHIYRTL 312
>gi|167725257|ref|ZP_02408493.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 275
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 2/270 (0%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ + + + + ++ + K K+ + + +L AG+RS + ++
Sbjct: 1 AGAVAAGDGRAPPAVWIEKLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLY 60
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ V+ + + + ++LIG GF P+ ++ + RQ
Sbjct: 61 FAAKTVLALALPAAAM--PLLIGTAIADSPYSVSAMLVLIGAFGFYLPNAMLARRIAARQ 118
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I +PDALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L + E+ ++
Sbjct: 119 RMIVEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKE 178
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A N RT + V + LIQ+DR+GTSIG SLRVL R++R M AE++AA +
Sbjct: 179 TALRNLALRTGAEDVDAFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIAL 238
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
KL P+I P L+ V++GPA + I T+
Sbjct: 239 KLLFPLIFCIFPALLTVLLGPAFIHIYRTL 268
>gi|114800177|ref|YP_759874.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
15444]
gi|114740351|gb|ABI78476.1| putative Flp pilus assembly protein TadC [Hyphomonas neptunium ATCC
15444]
Length = 310
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 78/313 (24%), Positives = 150/313 (47%), Gaps = 3/313 (0%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A+ ++ + + + L L ++S +I R+ + + R +
Sbjct: 1 MPALLSSGPVIPFVLGFLALLLAVPGLISFLRSRQDAGDIERRLSRRPGTGAAEAKRSES 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ K++ KL AGF ++ + R + +I +
Sbjct: 61 KLGKAVMGIADNAAPTDGAEVSAARAKLNQAGFTGAKAVPRYFLARFICVVIPQVA---L 117
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F L EYP + V A I++ G AP ++ + +R+ + +PD +DL++ CV
Sbjct: 118 FFALPYLQEYPRYVPVMASIILVLAGLAAPGKFLDMRISQRKQACSSGFPDMMDLMVACV 177
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+S+D +++RV E++ + ++ M EL +R++A+ F R +D +
Sbjct: 178 EAGLSLDASVQRVGEELELRHPIIAGHMRTLSLELRAGKSRKMAWRAFAERLGIDEAGSL 237
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L Q++ GTS+G +LRV ++ R R++ AE+KA +L K+T+P+IIF PVL+ V+
Sbjct: 238 ATMLRQAEEMGTSLGQTLRVFSADMRQRRILMAEEKAMALPAKMTLPLIIFVFPVLLGVL 297
Query: 315 IGPAILSIIDTMK 327
I PA++ ++ T+
Sbjct: 298 ILPAVVMLMTTLG 310
>gi|83718164|ref|YP_440464.1| hypothetical protein BTH_II2276 [Burkholderia thailandensis E264]
gi|83651989|gb|ABC36053.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 296
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 81/282 (28%), Positives = 139/282 (49%), Gaps = 3/282 (1%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRA 104
+ +A E + + A + + + KL+L + + +L
Sbjct: 10 RGLARRLEQIGGAGAVAAGDSPAPPAVWVEKLAEISQPISKLSLPKSGWENSPLRLRLIN 69
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG+RS + ++ + V+ + F + ++LIG GF P
Sbjct: 70 AGWRSPSAAHLYFAAKTVLALALP--AAAMPFLIGTAIADSPYSVSAMLVLIGAFGFYLP 127
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++ + RQ I +PDALDLL +CVE+G+ +D AL +VA+++ +S +++E+ L
Sbjct: 128 NAMLARRIASRQRMIIEDFPDALDLLTVCVEAGLGLDAALTKVADELRLRSPVVADELGL 187
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ E+ ++ A N RT + V + LIQ+DR+GTSIG SLRVL R++R
Sbjct: 188 MLLEMRSGFTKEAALRNLALRTGAEDVDAFSAMLIQADRFGTSIGASLRVLSDTLRTQRR 247
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
M AE++AA + KL P+I P L+ V++GPA + I T+
Sbjct: 248 MRAEERAAKIALKLLFPLIFCIFPALLTVLLGPAFIHIYRTL 289
>gi|163757631|ref|ZP_02164720.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
gi|162285133|gb|EDQ35415.1| hypothetical protein HPDFL43_19512 [Hoeflea phototrophica DFL-43]
Length = 336
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 56/320 (17%), Positives = 125/320 (39%), Gaps = 20/320 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D +A+ A+S +L Y V+ + + E R + + + +
Sbjct: 4 LDTVVVAIIGLAALSAGALGYGVLYSRIEGDRKAENRVKRVKAAETDRSKASAARDRLAE 63
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+++ R SL+ +K + +K+ AG +SL ++ LV+ ++
Sbjct: 64 ANKRRKSVQDSLKTLDEKNKENDKKTSPPLKDKIGQAGLP--FSLGQFYMISLVLGLVAG 121
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++G + + A + G P + L +R + +P+ALD
Sbjct: 122 LVGFVAYGS-----------PLVAAGIAIIFGAGVPRWIVGYLRNRRLKAFLSEFPNALD 170
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ ++SG+ ++ A+R ++ P+ E + N A Y+R +
Sbjct: 171 IMVRSIKSGLPLNDAIRMIS---AEGQEPVRTEFKRIVDSQQMGMNIPEACARLYSRIPL 227
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + G ++ ++L L R + M+A+ A S+ K + II LP
Sbjct: 228 SEANFFSIVIAIQAQAGGNLSEALGNLSRVLRDRKKMKAKINALSMEAKASAA-IIGALP 286
Query: 309 VLILVII---GPAILSIIDT 325
++ +++ P + I+ T
Sbjct: 287 FIVALLVYLTSPDYIMILFT 306
>gi|242311994|ref|ZP_04811011.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254265316|ref|ZP_04956181.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|242135233|gb|EES21636.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254216318|gb|EET05703.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 313
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 11/314 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + + + + A + G +A E + + A +
Sbjct: 3 ILLLLGLFAIVVAGVMATWLAFAPRG--------LARRLEQIGGAGAVAAGDGRAPPAVW 54
Query: 74 TRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + KL+L + + +L AG+RS + ++ + V+ + +
Sbjct: 55 IEKLAEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALALPAAAM 114
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ ++LIG GF P+ ++ + RQ I +PDALDLL +
Sbjct: 115 --PLLIGTAIADSPYSVSAMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTV 172
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V
Sbjct: 173 CVEAGLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVD 232
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+
Sbjct: 233 AFSTMLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLT 292
Query: 313 VIIGPAILSIIDTM 326
V++GPA + I T+
Sbjct: 293 VLLGPAFIHIYRTL 306
>gi|152994352|ref|YP_001339187.1| type II secretion system protein [Marinomonas sp. MWYL1]
gi|150835276|gb|ABR69252.1| type II secretion system protein [Marinomonas sp. MWYL1]
Length = 316
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 71/320 (22%), Positives = 152/320 (47%), Gaps = 7/320 (2%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGE--LEKRMKSVAVEREILRKQQITSLQKDS 67
++ + + + + ++ + L R++S + + + + + L ++
Sbjct: 1 MTNDMMFPVLAGIFLCTTGLVLLGLYFRTKPKTLADRLQSSGIMDKDILQVEAVLLSQND 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+L + + L ++L L AGFR + +L + + + II
Sbjct: 61 ERRKL-QKWLQPLDRIGQELA-GTESDKFATRKLLLMAGFRRQNALGVFTFCKFSLGIIC 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ ++++FG + + +++ + G A VW+ R + + PDAL
Sbjct: 119 I---LLFLFGVLESGNRLSLNGLAGSLMLLFFGSFAAEVWLKMRAASRGGRLSSSLPDAL 175
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL++IC E+G+ + + + V++++ + ++EE+ T AEL L +R A N R
Sbjct: 176 DLMVICAEAGLPLGRIFKTVSKELAFSAPEIAEELGYTHAELQILSDRTKALLNLSERCG 235
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ V LIQ++RYGT + +LR + E+R +++ E+KA L +L+VP+++F L
Sbjct: 236 VENVEAMVSTLIQAERYGTPLSQALRTISEESRKRLVLDLEEKAGKLPAQLSVPLMVFIL 295
Query: 308 PVLILVIIGPAILSIIDTMK 327
P +I ++ PA++ II +
Sbjct: 296 PPVIAMMGTPAMIRIIRMLG 315
>gi|317154600|ref|YP_004122648.1| type II secretion system F domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944851|gb|ADU63902.1| Type II secretion system F domain protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 317
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 82/316 (25%), Positives = 132/316 (41%), Gaps = 10/316 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIP---SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ A F+ + + G R++ R +
Sbjct: 5 LIPFIAAGLAFATVLVAGLGMAGYFGGAGQAARLRERVAGGPTGRSVES-----RPLFDG 59
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR S + K+ K + L AG RS ++ ++ + + L
Sbjct: 60 LRRAVSGAFERLGSKVAPKDADEADRTRKALVQAGLRSPGAVIKFQGTKVALALCLSSLF 119
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ L + L + + +G P VW+ KR+ ++ PDALDLL+
Sbjct: 120 LVVRSF--TLSDLSVSLTCFVAVGLAALGVYGPEVWLRRRTTKRRLAVANELPDALDLLV 177
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CVESG+ +DQAL RV ++ +S E L EL R A R +D +
Sbjct: 178 VCVESGMGLDQALDRVCHEMRTSGPVISAEFKLLTLELRAGKGRGDALRGLSERVGLDDL 237
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ T L+Q+D +G S+G +LRV R++R AE+KAA L L +P+I F LP L
Sbjct: 238 NSLTSLLVQADIFGISVGRTLRVYSDAMRTKRSQRAEEKAAKLPVLLLLPLIGFILPALF 297
Query: 312 LVIIGPAILSIIDTMK 327
+ I+GPA++ ID
Sbjct: 298 IAIMGPAVILFIDVFA 313
>gi|332970974|gb|EGK09948.1| hypothetical protein HMPREF9374_2751 [Desmospora sp. 8437]
Length = 306
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 123/311 (39%), Gaps = 14/311 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V L + + R + V + + +
Sbjct: 1 MLKIYALVGAAWLFFILAGWMYVKYR--DRQEKVHHRIGEQMCVASVAETEGDGWKQTLV 58
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R K + L + + + L AG +++ L ++V I I G+++
Sbjct: 59 RWCDQFAPTGKNIELLSDPE--ELKDDLIKAGHPYGLTVDRLQGAKVVFAIGGTIFGLLY 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L AV +G+ P + QKRQ I+ PD +D++ I +
Sbjct: 117 FLI-------GLPLAPFAVAFGPLLGYLFPIYMVKFKAQKRQEEIQYELPDFMDMMSITL 169
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+++D AL + + PLSEE+ E+SF R+ A+ +RT +
Sbjct: 170 QAGMALDTALDYY---VSTNNGPLSEEIARMNQEISFGVQRETAYRALIDRTDSTELETL 226
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
Q++IQ+ GT I ++ + E R+ R +A+++A PK++ + P ++L++
Sbjct: 227 VQSMIQAHNLGTPISETFALQAMEMRNMRAEKAKEQAGKSEPKISAVAGLVITPSIMLLV 286
Query: 315 IGPAILSIIDT 325
G IL T
Sbjct: 287 FGAFILKFFFT 297
>gi|134281772|ref|ZP_01768479.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|134246834|gb|EBA46921.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 313
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 151/310 (48%), Gaps = 7/310 (2%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I + +F+++ A V+ + L + +A E + + A +
Sbjct: 3 ILLLLGLFAIVVAGVMATW----LAFAPRGLARRLEQIGGAGAVAAGDGRAPPAVWIEKL 58
Query: 78 KSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + KL+L + + +L AG+RS + ++ + V+ + +
Sbjct: 59 AEISQPISKLSLPKSGWENSPLRLRLINAGWRSPGAAHLYFAAKTVLALALPAAAM--PL 116
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ ++LIG GF P+ ++ + RQ I +PDALDLL +CVE+
Sbjct: 117 LIGTAIADSPYSVSAMLVLIGAFGFYLPNAMLARRIAARQRMIVEDFPDALDLLTVCVEA 176
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ +D AL +VA+++ +S +++E+ L + E+ ++ A N RT + V +
Sbjct: 177 GLGLDAALTKVADELRLRSPVVADELGLMLLEMRSGFTKETALRNLALRTGAEDVDAFSA 236
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
LIQ+DR+GTSIG SLRVL R++R M AE++AA + KL P+I P L+ V++G
Sbjct: 237 MLIQADRFGTSIGASLRVLSDTLRTQRRMRAEERAAKIALKLLFPLIFCIFPALLTVLLG 296
Query: 317 PAILSIIDTM 326
PA + I T+
Sbjct: 297 PAFIHIYRTL 306
>gi|187919329|ref|YP_001888360.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717767|gb|ACD18990.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 318
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 79/306 (25%), Positives = 144/306 (47%), Gaps = 2/306 (0%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+ + +++ +V + R V E + + + + A +K
Sbjct: 6 IVLLGVMFLIVFGAALKAMALLRPDPVQRRIEEIGQPGVAAEADTGAQKNWVETVTKMSE 65
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ K + + AG R+ + + V+ V+ + + +I +
Sbjct: 66 RVARLSLPKEDWDKSVLRLRFANAGIRTPSAAAVYFAVKTVLALALPAIALIVFGNAFQA 125
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
E + V+ +GF P+V + LV+ RQ + PDALDL+ +CVE+G+ +D
Sbjct: 126 GER--IYLLLTVLAASALGFYLPNVVMRRLVESRQRKLFEDLPDALDLMTVCVEAGLGLD 183
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ RV ++IG +S L +E + + EL R+ A N RT ++ + LIQ+
Sbjct: 184 AAMLRVTQEIGVKSHALKDEFDMVLLELRAGSGREKALRNLSLRTGVEDIDTLAAMLIQA 243
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
DR+GTS+GDSLRV R++R + AE++AA + KL P++ F P L+ V++GP+ +
Sbjct: 244 DRFGTSVGDSLRVYTDNLRTKRRLRAEEQAAKIALKLLFPLMFFIFPTLLAVLVGPSAIQ 303
Query: 322 IIDTMK 327
I+ +
Sbjct: 304 IVRQLS 309
>gi|226310159|ref|YP_002770053.1| hypothetical protein BBR47_05720 [Brevibacillus brevis NBRC 100599]
gi|226093107|dbj|BAH41549.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
100599]
Length = 311
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 71/313 (22%), Positives = 136/313 (43%), Gaps = 12/313 (3%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
I T V +F L++A+ + +EK+ K +A E+ + +++++S RL R
Sbjct: 3 ALIITCVFLFLLLFAICLKEWYRYSIEKQ-KLLAHVHEMSGHKNYGVRKQETSSERLVKR 61
Query: 76 DSKSLRNF-VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ V + + + L AG + ++ V++ + ++ +I G ++
Sbjct: 62 LLRYGDDYAVMGQRINFFSESHEVEDWLLRAGRPLDLTVAQFQGVKIFMALLGIIAGTLF 121
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F +I +G+ P + + + RQ ++ P+ LD + + +
Sbjct: 122 FIL-------RFPFSHLGLIAWPLIGYFLPILLLKKKARDRQHQLRYDLPEFLDTVSVTL 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+S+DQALR V + G P+ EE EL R+ A+E R +
Sbjct: 175 QAGVSLDQALREVIKFFDG---PIREEFSRFNQELDLGVQREKAYEQLLRRNDNPEFQML 231
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ALIQ R G I + + R R ++KAA PK+T+ P I++I
Sbjct: 232 IKALIQGMRLGVPIAVTFKAQAENMRRIRKELIKEKAAKASPKVTLITTFIVTPTAIILI 291
Query: 315 IGPAILSIIDTMK 327
G +L+I+D
Sbjct: 292 GGLMVLNILDNFS 304
>gi|23016184|ref|ZP_00055943.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
magnetotacticum MS-1]
Length = 319
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 114/294 (38%), Positives = 179/294 (60%), Gaps = 6/294 (2%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR----TRDSKSLRNFVKKLNLKAIL 93
R+K+V+ R L ++Q L + S R R R +R + +L L+ ++
Sbjct: 28 RDRRAARIKAVSGRRRELSERQKADLDQARGSGRRRGAMPQRRVALMRAVIDRLKLQDLM 87
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + KL AG+R + + + R+ +P++ L LG+I+ E P +R +
Sbjct: 88 EAKALKAKLAQAGWRGQAAPLTFIFARVALPVLLLALGLIYATTL--FDEQPLMIRAMIL 145
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ G P++W++N VQKRQ ++ RA+PDALDL++ICV++G+S++ AL RV E++
Sbjct: 146 AVAMGAGGLLPNIWLANAVQKRQLALGRAFPDALDLIVICVDAGLSVETALGRVTEEMMN 205
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
S ++EE+ LT AEL+FL +R+ A+ENF RT + V++ + ALIQS++YGT + +L+
Sbjct: 206 SSPEMAEEIGLTAAELAFLADRRQAWENFAGRTGLPQVKSLSTALIQSEKYGTPVAQALK 265
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
VL E R R+ AEKKAA+L KLTVPMI+FFLPVL L+I GPA L + +K
Sbjct: 266 VLSQENRESRMAAAEKKAAALPAKLTVPMIVFFLPVLFLMIAGPAALQVSGMLK 319
>gi|283777928|ref|YP_003368683.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436381|gb|ADB14823.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 326
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/324 (19%), Positives = 144/324 (44%), Gaps = 9/324 (2%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
++LF + + L+ + S L+ RM+S+ +
Sbjct: 1 MWELFSSPVMIQVAVFLGVSSLLLGLHWLMSSSDTRLDSRMESL-----TEGDSHAIDDR 55
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + K + + +L AG + ++ + L +LV+
Sbjct: 56 YRAKPRGMMQLLVPQIPRLAKVILPNDEATRTRLQAQLIQAGIYAPSAMGLYLTAKLVLM 115
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++G++ + + + G G PS+W++ KRQ ++ +
Sbjct: 116 TIPPVVGLVVAWF----GWFDPAYAMLLGGAGGCAGMLMPSMWLAYYRAKRQRQLRTSLA 171
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D LDL++ C+E G+ + A+ +VA+++ L+ E+L+ + E+ + +VA +
Sbjct: 172 DFLDLMVTCLEGGVGMQAAISQVADELRTPHPILATELLVVLREVEVGRSIEVALAHLAE 231
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT ++ +R+ + Q+ R+G+++ D++R L R++R AE++A K+ +P ++
Sbjct: 232 RTGLEELRSLATFVQQAQRFGSTMADAMRELSDMLRTQRETRAEERAQKASVKILIPTLL 291
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
F P + +V+ GPA + I +++
Sbjct: 292 FIFPTVFVVLAGPAAIQIQESLAK 315
>gi|89100216|ref|ZP_01173083.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
gi|89085066|gb|EAR64200.1| hypothetical protein B14911_20190 [Bacillus sp. NRRL B-14911]
Length = 312
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/309 (21%), Positives = 135/309 (43%), Gaps = 16/309 (5%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL----RT 74
+++ +V+ + + KR + + + + + + K + S
Sbjct: 4 IILITVILCWLTLVLGLINLYQFAKRKEVLKLHIDEIAASSAFDVSKKKSGSEKVITFLA 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R + +++NL + I LR AG E ++ ++V II I G+
Sbjct: 64 RYADDFSTIGERVNLLS--ESAEIQTLLRKAGNPFEMTVGRFQGFKIVCVIIGFIAGLFA 121
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ L A + + GF P + + + +KRQ ++ PD LD + + +
Sbjct: 122 VLLGLPLSN-------IAFVTLPIFGFFVPILLVRSKAKKRQQQLRSDLPDFLDTVSVSL 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G ++D AL+ V + S P+ EE + + E+ R+ A+ R + ++
Sbjct: 175 QAGSNMDSALKEVIKYF---SGPIKEEFSIFLQEIDLGVPREKAYGGLLERNDNEEFQSF 231
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++LIQ+ R G + +L+ + R L + ++KAA PK+T+ P+++L+I
Sbjct: 232 IKSLIQATRLGVPMASTLKSQAEDIRKISLEQVKEKAAKASPKVTMITSFIIAPLIMLLI 291
Query: 315 IGPAILSII 323
IG +L++I
Sbjct: 292 IGLVLLNMI 300
>gi|283769336|ref|ZP_06342235.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
gi|283103993|gb|EFC05377.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
Length = 313
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/320 (23%), Positives = 143/320 (44%), Gaps = 9/320 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAV-EREILRKQQITSLQKDS 67
L + I+ + +F +V L ++K +A E + R + S
Sbjct: 1 MSQNLLILLISVSTGLFVYSMILVKFVNERTHLRLQLKDIAETENSLRRNSDDMDFENKS 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
SR+ + L F+ ++ A + + +L AG R + L +R++V +
Sbjct: 61 FYSRVIFPGIERLSLFIGRVFPIAQKDQDKLNLQLLQAGLRIK--AQTYLTIRILVIAVC 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I I+I Y + + IL G+ +++ V +RQ+ +++ P L
Sbjct: 119 MIFTYIYIGPYHLYFGFSVMMSALGGILS---GYIISRFVLASRVTRRQNLLEKQLPGFL 175
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CVE+G+ DQA++ V + G LS+E + ++S R+ A + R
Sbjct: 176 DLLSVCVEAGLGFDQAIQYVCHEYKG---ELSDEFKVVQRDISLGSTRKQALMSLCQRVT 232
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ T A++Q+D G S+ + L R + E+KA L K+ +PM+IF
Sbjct: 233 SSQMTTFTAAVLQADEMGISLKNILNAQSRNVRLAYKNKIEEKAQKLSTKILIPMLIFIF 292
Query: 308 PVLILVIIGPAILSIIDTMK 327
PV+ ++++GPA+ I+ +
Sbjct: 293 PVIFIILLGPAVPGIMKALG 312
>gi|308050051|ref|YP_003913617.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
gi|307632241|gb|ADN76543.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
Length = 321
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/322 (23%), Positives = 144/322 (44%), Gaps = 11/322 (3%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
++ + +L+ + A++ + + + S L +R +++ +
Sbjct: 10 EVLNDRQLSTYLFYAIAAAAGVMLALALSFLFSGLYS--------PTRMRLKELKTGAVA 61
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S S + + L + + +L AGF S +L I +RL+ ++
Sbjct: 62 SGSGANFDDALEHENRVREGLVKHLSVDNSGSRKRLIHAGFHSNSALAIYNGLRLLFLLL 121
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ II ++ +++ ++++ + PS + R I+ +PDA
Sbjct: 122 MAMVSII---AIPMMVGLSTFMQIYIIVMLMGLAILTPSFILDRFAASRMRKIRNGFPDA 178
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL++C ESG + AL+RV+ ++ L+EE+LL + A F RT
Sbjct: 179 LDLLVVCCESGQGLLAALQRVSVELRVSHKELAEELLLVCQKNRAGIELSTALHEFSERT 238
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D +R A+ QS R GT I ++LRV E R +R+ AE+ AA LG K+ PM+
Sbjct: 239 GLDDIRGLNGAITQSLRLGTGIAETLRVYADEYRDKRMQAAEEMAAKLGVKIIFPMLTCI 298
Query: 307 LPVLILVIIGPAILSIIDTMKD 328
P +V +GPA++ +++
Sbjct: 299 WPSFFIVAVGPAVIKVMEVWDK 320
>gi|220913386|ref|YP_002488695.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860264|gb|ACL40606.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 291
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/312 (24%), Positives = 146/312 (46%), Gaps = 24/312 (7%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A+ ++I I +V S R + +L + +
Sbjct: 4 IALAAILAIVVPISGMVWLSFTGDRAALR-------------RIKANLGGRPSQAAQSLN 50
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
S+ L F +++ K + + +L AG ++ L +L+V+ ++ ++G +
Sbjct: 51 VSQHLVEFSQRITPKGY--EGWLDKQLSGAGRPKQWPLARILMVKPMLAFGGALIGFMLF 108
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
P R +LI +G+ P + + N QKR+ +I+ P+ALD +LI V+
Sbjct: 109 L------GAPSAGRFVMAVLIVALGYFVPDLLLRNRAQKRREAIRLELPNALDQMLISVQ 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ + A+ R E+ G PL+EE++ T+ ++ +R+ A+ R + VR
Sbjct: 163 AGLGFETAMGRAGENGRG---PLAEELIRTLQDIQVGRSRKEAYLALSERVDVPSVRTFV 219
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A++Q+D YG +I + L+ + R +R AE+ A + K+ P+I F LP L +V++
Sbjct: 220 RAVVQADAYGIAIANVLKTQAKDMRIKRRQLAEEHAMKMPVKMLFPLIFFILPTLFIVLL 279
Query: 316 GPAILSIIDTMK 327
GPA+L I+
Sbjct: 280 GPAVLQIMSVFS 291
>gi|167584966|ref|ZP_02377354.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 324
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/318 (25%), Positives = 154/318 (48%), Gaps = 7/318 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ + ++F+ ++ + +++R++ L T
Sbjct: 4 LNLMQILMLGGLFAAVFAGALVALLVFVPRN-MQRRLQQAGGGTVTLGDGAATG----GF 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S + ++ + K K D + +L AG+R+ + ++ + ++ I
Sbjct: 59 ASEWVAKFAEMSKPISKLSVPKEGWEDSPLRVRLMNAGWRTPNAASVYFGAKTLLAIALP 118
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ L ++++G +G+ P+V +S + RQ I +PDALD
Sbjct: 119 --AVLLPALITTRLAESRYTLSMILVVLGAIGYYLPNVVLSRRIASRQRVIFEDFPDALD 176
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL +CVE+G+S+D AL +V E++ +S ++ E+ L + E+ ++ A N RT +
Sbjct: 177 LLTVCVEAGLSLDSALLKVCEELQFRSPIVASELDLMLLEMRSGFTKEAALRNLALRTGV 236
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + LIQ+DR+GTSIGDSLRVL R+ R M AE++AA + KL P+I P
Sbjct: 237 EDIESFCAMLIQADRFGTSIGDSLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFP 296
Query: 309 VLILVIIGPAILSIIDTM 326
L+ V++GPA + I +
Sbjct: 297 ALLTVLLGPAFIHIYRIL 314
>gi|119717342|ref|YP_924307.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119538003|gb|ABL82620.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 304
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/281 (25%), Positives = 134/281 (47%), Gaps = 8/281 (2%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+S+ + R ++ + + + + + + L + I ++L A
Sbjct: 32 RSLELVRAASASPEVVTREAEVPFGERVLDPLRERTLGLGR-RLAGHEAADRIRHRLDLA 90
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G ++++ L ++ + G++ LLE + V + +G+ P
Sbjct: 91 GNPPGWTVDRYLTGTVLGAAL----GLVGAGLLGLLLEPATPVLVLLLAAGLVLGYFGPR 146
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+++ R I+RA PDA+DLL I VE+G+ D A+++VA+ PL++E+
Sbjct: 147 LYLYQKSYDRSERIRRALPDAIDLLTISVEAGLGFDAAVQQVAQH---TEGPLADELSRV 203
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ E+ +R A + RT + +R A++Q+D G I LRV E R +R
Sbjct: 204 LREMQLGQSRSAALRSLSARTTVPELRGFVGAMVQADALGIPIAQVLRVQSREIRVKRRQ 263
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE++A + K+TVP+I LP L +V++GPA+L+I+DT
Sbjct: 264 HAEERAQQVPVKITVPLIFCILPCLFVVVLGPAVLNIMDTF 304
>gi|328952510|ref|YP_004369844.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452834|gb|AEB08663.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 312
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 10/321 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ L A+ + + A + L L R+ + + S D+A
Sbjct: 1 MNPWSLTAAVLSFAGV--TTLAYYLGRLAEQRLYTRLIK---RSLTAGRDRPKSFFGDAA 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
RL T L I L AG+RS + L+ + +
Sbjct: 56 PQRLLTEVVLPLGRLAA---PSGEEDLAVIRRLLCQAGYRS--APYNLVEAYFGLRALLA 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + L G+ P+V + +R+ I + PD LD
Sbjct: 111 LGLGALYVLWLFFAGGWTSRSLLILFLPLTAGYYLPAVILRRQASERRLKIWQELPDVLD 170
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL IC+E+G+S+D AL RV+ ++ + LS E+ E+ R+ E +R Q+
Sbjct: 171 LLNICIEAGLSLDSALYRVSRELRDIAPVLSRELAQYFLEIQSGLPRKEVLEKIVDRNQV 230
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + L+QS R GT I +SL+V R+ER+ AE++ A + KLT PM + LP
Sbjct: 231 NALSGVVNVLMQSSRLGTDIAESLKVYSVSLRTERMQAAEEQGAKVSTKLTFPMTMLILP 290
Query: 309 VLILVIIGPAILSIIDTMKDH 329
L+LV++GPA++ +++ + H
Sbjct: 291 ALLLVVLGPAMIKMLEKLSQH 311
>gi|84498181|ref|ZP_00996978.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
gi|84381681|gb|EAP97564.1| probable secretion system protein TadC [Janibacter sp. HTCC2649]
Length = 301
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 13/267 (4%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + +A RL + L+ ++L+ + L AG + + + +
Sbjct: 47 AKSELAAKDRLVVPFEQGLKGVARRLSP--AGTAGRLAASLNRAGNPPAWPVERIFGAK- 103
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+G++ + ++ G F P + + N +RQ +++
Sbjct: 104 -------GIGLVAGALLGLFFGGLGLTGLLYAVIGGAALFFLPDLLVYNAGIRRQEQLRK 156
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ DALD+L +CVESG D AL +VA ++ + P++ E ++E R AF+
Sbjct: 157 GFADALDMLTVCVESGQGFDAALGQVARNV---TGPIAGEFARVLSEFQIGMTRGQAFQG 213
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R V+N AL+Q+DR G I LR E R R AE+KA + K+ P
Sbjct: 214 MAERNTSPEVKNFVSALVQADRLGVPIAGVLREQTKEMRVVRRQLAEEKAQKVTVKVVFP 273
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKD 328
+++ PV+ +VI+GPA ++I D
Sbjct: 274 VLLCIFPVIFVVILGPAAINIYDLFSK 300
>gi|153006801|ref|YP_001381126.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
gi|152030374|gb|ABS28142.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
Length = 314
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 84/318 (26%), Positives = 147/318 (46%), Gaps = 14/318 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
DA LA+ +++ S+ A + +R++ + + + + ++A
Sbjct: 3 LDALTLAMGGLVVLAVASIGAAARSFRAAADPAVRRLREGSDPHSVPLAAVVAGERLEAA 62
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R + + + + +L AGFRS + + + + +
Sbjct: 63 THEASRRGAAT----------TDEDAESRLRRQLVWAGFRSMRAPKLFVGAKA----VLS 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + P +G + + GF P++W+S+ + R I RA PDALD
Sbjct: 109 FGLLLGFLAVNAARAEPVPFALGIAVWLAGAGFFLPNLWLSSRIANRLRQIDRALPDALD 168
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL+ CVE+G+ +D AL+RV+ +I LS E+ LT E+ R F RT
Sbjct: 169 LLVTCVEAGLGLDAALQRVSGEIALAWPLLSSELRLTFLEVRAGIPRMDGFRRLAARTGS 228
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R L Q++ +GTSI +LRV R R+ AE++AA + K+T+P+I+ LP
Sbjct: 229 PELRALAATLTQTELFGTSIASALRVQAEGIRIRRMQRAEERAAYVAVKMTLPLILCILP 288
Query: 309 VLILVIIGPAILSIIDTM 326
L VIIGPA ++I+ T+
Sbjct: 289 SLFAVIIGPAAINIMKTL 306
>gi|156744077|ref|YP_001434206.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235405|gb|ABU60188.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 309
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 127/314 (40%), Gaps = 8/314 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L + L+ A ++ S + +R+ + + K S R+
Sbjct: 2 LIIPSIVTALAILLVVAGLMASRRDVTVGERLDAYLSPTVEKAPSNPSLEAKQPFSERVI 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + + E + +L AG+ + + + I+ +++G++
Sbjct: 62 IPLLKRASRAFAWIMPQN--RYEALRLRLAMAGYPWGLTAADFVGAK---GIVCVLVGLL 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
P + + I F P VW+S + +RQ+ + A PDALDLL I
Sbjct: 117 TGVIGWAADAAPTFFNILLLGGIALCAFFLPDVWLSRRIGQRQTELLNALPDALDLLAIA 176
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+G+S + A++ + + L+ E + ++S R+ A + RT + + +
Sbjct: 177 TAAGLSFENAIQEITSK---WTNELAREFSRVLRDMSMGVPRRQALTDMAERTGVPDIAS 233
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ Q++ G SIG L V E R+ R A+++A K+ P++ P + V
Sbjct: 234 FVSAIKQAEALGVSIGRVLTVQAEEMRTRRRQRAQERANQAPVKMMFPLVFLIFPAIFAV 293
Query: 314 IIGPAILSIIDTMK 327
++GPA+ +++
Sbjct: 294 LLGPAVPQLLEAFG 307
>gi|154250693|ref|YP_001411517.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154643|gb|ABS61860.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 328
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 50/319 (15%), Positives = 119/319 (37%), Gaps = 23/319 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + L +A ++ + + G +KR+ V + + +
Sbjct: 1 MDQSTLMIAGIAVLAALCIGAIGFLFVGGESRSQKRVARVTRAGN---ARLVAVDGEVDN 57
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + R + ++L+ +K + ++ ++ AG E + + +V I F
Sbjct: 58 SEKRRKQMQETLKGLEEKQ--QEHKKRVSLNTRIERAGL--EMTTRNFYIASIVTGIAFF 113
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + + + + GF P +S L+++RQ + + +A+D
Sbjct: 114 LVFKLVGLSL-----------LVSALSGFAGGFGFPRWVLSYLIKRRQKAFTEEFANAID 162
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ V+SG+ ++ L+ +A P+ E + + Y R +
Sbjct: 163 VIVRGVKSGLPVNDCLKLIAT---ESPEPVRTEFQGIVEGQRVGVTLEQGLAKIYERMPL 219
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V L + G ++ ++L L R + M + +A S K + +I P
Sbjct: 220 PEVNFFQIVLAIQQKTGGNLSEALGNLSKVLRERKKMRGKIQAMSQEAKASAGIIGSLPP 279
Query: 309 VLILVII--GPAILSIIDT 325
++L+I P + ++ +
Sbjct: 280 GVMLLIYFSSPGYMDVLFS 298
>gi|87199542|ref|YP_496799.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135223|gb|ABD25965.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 322
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 76/322 (23%), Positives = 144/322 (44%), Gaps = 7/322 (2%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
D L ++ A+ + + A R V + S
Sbjct: 1 MDFILQNALLRSLILALFFAATVIAAFSAISY----FTRRAQVRAHLRTVSVDSGASNGA 56
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+++ ++ R+ S+ N +++ L + + KL AAGF + + I + RL++
Sbjct: 57 ETSLAQSRSGPFWSIVNVIERTGLSLADSNPDALRTKLIAAGFEATEAPTIYTLSRLILV 116
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ I ++ E + G +G AP+ ++ +R +I +P
Sbjct: 117 FLLPACAISYLMLTG--SELTIFKLYMVGSVSGLLGLIAPAWFVRIKADRRMEAITNGFP 174
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ LDL+L+CVE+G+ ++ A RV+ +I ++ ++ T L R+ A
Sbjct: 175 NCLDLILVCVEAGLGMEAAFDRVSREIARAEPQVAHLLVRTNLHLRAGATREEALHRMAT 234
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+D +R+ LIQS++ GTSIG +LRV SE R +R M AE+KA L +++P++
Sbjct: 235 LAGVDEIRSFATLLIQSEKLGTSIGTTLRVFASEMREKRRMRAEEKAHRLPVLISLPLVT 294
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
LP +I V++ PA + ++ +
Sbjct: 295 CMLPTMIGVLMIPAAIRVVRKL 316
>gi|90411198|ref|ZP_01219211.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
gi|90328044|gb|EAS44365.1| hypothetical putative tight adherence TadC-related transmembrane
protein [Photobacterium profundum 3TCK]
Length = 224
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 3/225 (1%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG+ + +L +++++ II L +I L E Q + +L +
Sbjct: 1 MHAGYEQKQALTNFYAIKIILVIIALFGVLI---SSKFLPELSTQKILFYTLLAMAIATF 57
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P+ + +KR + A+PDALDLL++ E+G+ AL RVA +I S LS E+
Sbjct: 58 LPNFILQKKAKKRIRKLSNAFPDALDLLVVTTEAGLGFLAALNRVANEIDAISPELSNEL 117
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ ++ +A F RT + ++ + QS + G+S+GD+LR E R
Sbjct: 118 QIVCRKVRLGVPMPIALAQFIERTGLLELQGLVSIISQSVKLGSSMGDTLREYAIEFRDR 177
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R+ +AE++AA +G K+ P++ P +V +GPAI+++++
Sbjct: 178 RMQKAEEEAAKIGTKMIFPLVTCIWPGFFVVAVGPAIIAVLEVFG 222
>gi|108756874|ref|YP_632816.1| type II secretion system protein F domain [Myxococcus xanthus DK
1622]
gi|108460754|gb|ABF85939.1| type II secretion system protein F domain protein [Myxococcus
xanthus DK 1622]
Length = 296
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/316 (23%), Positives = 132/316 (41%), Gaps = 25/316 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + I ++ +F+ + L LE+ + V E K + +
Sbjct: 1 MDDVLTPILIGSSALLFAGAVGFLGLGLYQTMLERFLSEVRDESTGGMKGFGSVAIRRLG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R + L AG Y ++ ++ V ++ L
Sbjct: 61 AMNRRFMWPGY---------------EAKARRNLIKAGEPQAYKPEDIMALQEVSAVVGL 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+G+I + G+ + + L G P +W+++ V+KR I RA P +LD
Sbjct: 106 IMGLILLNGFG--------VSLVWAPLFLLFGMYYPLMWLNDQVKKRHLLISRALPYSLD 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + VE+G+ AL +V E G+ PL EE+ L + +L R+ ++ R +
Sbjct: 158 LLTLSVEAGLDFTAALAKVVE--KGKPGPLREELQLVLKQLKMGKTREEGLKSMIVRVDL 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ ALIQ+D+ GTS+G LR+ ++ R +R AEK A K+ P+I P
Sbjct: 216 PPLTTFVTALIQADKMGTSLGKVLRIQSTQMRIDRTQRAEKLAGEAPVKMLFPLIACIFP 275
Query: 309 VLILVIIGPAILSIID 324
+ +V+ GP + +
Sbjct: 276 TVFMVLFGPIVFQFMF 291
>gi|84685156|ref|ZP_01013055.1| Putative Flp pilus assembly protein TadC [Maritimibacter
alkaliphilus HTCC2654]
gi|84666888|gb|EAQ13359.1| Putative Flp pilus assembly protein TadC [Rhodobacterales bacterium
HTCC2654]
Length = 329
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 81/334 (24%), Positives = 143/334 (42%), Gaps = 23/334 (6%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
L ++ L +A+ AVS+ + A+ +RM++ + + +
Sbjct: 9 LTSLLNSPGLLMAM-VAVSVVFIGLALWTAIAMRDPAAERMRAASAAYGRAANRDLLKTP 67
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
L+ L + I ++LR AGF +L V+RL++
Sbjct: 68 DALPEGMLKA------------LIPEERAERTQIRDQLRRAGFGGPNALRNFFVLRLILA 115
Query: 125 IIFLILGIIWI----------FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
++ + F + F V + +GF +P++W+ ++
Sbjct: 116 TAAPVIALALTALNMSIGLPWFLDKLVGGLTFISASRLVAICTAIGFWSPTIWLKRKIRA 175
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
RQ+ I+ +P+ALDLL I E+G+ D A+ RV + + S +SEE LL AE+ +
Sbjct: 176 RQAEIEAGFPNALDLLQISTEAGMGFDAAMTRVGQSLATVSPAISEEFLLCQAEILASRD 235
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R+ A + R + V Q + QS YGTSI +L +E R R M+A +KA L
Sbjct: 236 RRQALADMAERMGVAEVSAFAQVVSQSMEYGTSIAKALNAYAAEMREMREMKAIEKANRL 295
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+++ M + LP L L+ +GP ++ + D
Sbjct: 296 PVQMSGVMSVMMLPALFLITLGPTVIRYLSVFGD 329
>gi|220918108|ref|YP_002493412.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955962|gb|ACL66346.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 319
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 67/253 (26%), Positives = 128/253 (50%), Gaps = 4/253 (1%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + + +L GFR +++++ L ++L + + ++
Sbjct: 64 RSALGRALDVLTRFARPMGDEAARLQLRLEQGGFRGPHAVSVHLALKLTLAVGL----LL 119
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + +L GF P + +++ + RQ +++R PDALDLL+ C
Sbjct: 120 TFLFVNAHRAERIEPAFVVAVLAFAAGFYLPDLLLTSRISSRQLTLERGLPDALDLLVTC 179
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D +++RV+E+I L+ E+ T E+ R AF RT + +++
Sbjct: 180 VEAGLGLDASVQRVSEEIHRAWPQLATELRTTFLEVKAGIPRIEAFRRLATRTGVKDLKS 239
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ L Q++ +GTS+ +LRV R R+ AE+KAA + K+T+P+I+ LP L+ V
Sbjct: 240 LSATLAQTEIFGTSVALALRVQSDGMRVRRMHRAEEKAAYVSVKMTLPLILCILPSLLAV 299
Query: 314 IIGPAILSIIDTM 326
I+GPAI+ I+ +
Sbjct: 300 IMGPAIIGIMRAL 312
>gi|326404408|ref|YP_004284490.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
gi|325051270|dbj|BAJ81608.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
Length = 307
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 79/311 (25%), Positives = 143/311 (45%), Gaps = 6/311 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
AI ++F L+ + L +E++++ + + +R
Sbjct: 3 AAILWVPALFLLVSVTAVLMLRLVIVEEKLQRRIDRAAGTASGAAEKGGEPAQPIHVRIV 62
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L V + L + E + + LR AG R + +L + + +L+ +L ++
Sbjct: 63 M--GLGLAVARSGLLSPRTLEELRHTLRMAGIRDKGALALFVGTKLLSLTGLSVLSLLMS 120
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
V A ++ G P + I ++ ++ DALDL++IC +
Sbjct: 121 RFLHMTAG----HAVIAAVVGAIGGLLLPDIIIQQRRKRFIQKVEGGLADALDLMVICAD 176
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+S++ AL RVA ++ +++E LT E+ N + + RT +D ++
Sbjct: 177 AGLSLESALVRVAGELQLTHPAVAQEFTLTAQEMRIGGNIRDSLNALGVRTGLDSLKRLA 236
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQ+ +YGT + +LR L SE R E+L E++AA L LT+PMIIF LP + LV+
Sbjct: 237 STLIQTLQYGTPLTQALRTLSSELRQEQLTRFEERAARLPVLLTLPMIIFILPCVFLVVG 296
Query: 316 GPAILSIIDTM 326
GPA+L ++ +
Sbjct: 297 GPAVLKLLASF 307
>gi|197295161|ref|YP_002153702.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944640|emb|CAR57244.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 324
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 75/321 (23%), Positives = 147/321 (45%), Gaps = 6/321 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + + V + +++R++
Sbjct: 1 MQNLSVVQAVMLGGLFIFVAGGVL-VAMLLFAPRSIQRRIEQAGG---AGAGAIAGPGDG 56
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D +SR + + K K + + +L AG+R+ + + + ++ +
Sbjct: 57 DDLASRWVAKLVELSTPISKLSVPKEGWENSPLRIRLMNAGWRNPSAAALYFTAKTMLAL 116
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ + E + + +G+ P+V +S V+ RQ I +PD
Sbjct: 117 GLPCAALLVLITTSLGDERALLSVILVAL--AGIGYYIPNVVLSQRVKVRQQKIFEDFPD 174
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D AL +V+E++ +S ++ E+ L + E+ ++ A N R
Sbjct: 175 ALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLLEMRSGFTKETALRNLALR 234
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + + LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I
Sbjct: 235 TGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFC 294
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L++V++GPA++ + +
Sbjct: 295 IFPALMVVLLGPAMIHVYRVL 315
>gi|295700365|ref|YP_003608258.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439578|gb|ADG18747.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 322
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 78/321 (24%), Positives = 160/321 (49%), Gaps = 7/321 (2%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ T++ + +F+ ++ + ++ +R++ + +Q+ + +
Sbjct: 1 MQTLNITQILLLAGVFAIVFAAVFG-AMHLSTPRDMSRRIEQAGGANAVPAPEQLDAAAQ 59
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+L + + K K + +L AG+RS ++ + L + + +
Sbjct: 60 TPWYEKL----VEISQPISKLSVPKDGWEQSALRVQLMNAGWRSANAVPVYLAAKTALAL 115
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+L ++ ++ R ++++ G+ P+V +S RQ S+ +PD
Sbjct: 116 TLPLLAMLALY--GSSFASSLLERAIVLVVLAAFGYYLPNVVLSRRTAARQRSLVEDFPD 173
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D +L +V E+I +S ++ E+ L + E+ +++ A NF R
Sbjct: 174 ALDLLTVCVEAGLGLDASLMKVGEEIRLRSAVVASELELMLLEMRSGFSKEKALRNFSLR 233
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + + + LIQ++R+GTSIG SLRVL R+ R M AE++AA + KL P++
Sbjct: 234 TGVEDIDSFSAMLIQAERFGTSIGASLRVLSDTLRTRRRMRAEERAAKIALKLLFPLMFC 293
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L++V++GPA++ I +
Sbjct: 294 IFPALLVVLMGPAMIHIYRDL 314
>gi|310822671|ref|YP_003955029.1| type II secretion system protein f domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|309395743|gb|ADO73202.1| Type II secretion system protein F domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 296
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 10/229 (4%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ KL AG S Y ++ ++ + +I LI+G+I G + L + +L
Sbjct: 73 SKMRRKLIKAGDPSGYKPEDIMALQEIGLVIGLIMGLILANGLSQHLAWS--------LL 124
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G P++W+++ V++R +I RA P LDLL + VE+G+ AL +V E G+S
Sbjct: 125 AALFGLYYPAIWVNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVE--KGKS 182
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL EEM + + +L R+ A + R + + ALIQ+D+ GTS+G LR+
Sbjct: 183 GPLKEEMSIVLKQLKMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQ 242
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
++ R +R AEK A K+ P+I P + +V+ GP + +
Sbjct: 243 STQMRIDRTQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFMF 291
>gi|148261008|ref|YP_001235135.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|146402689|gb|ABQ31216.1| type II secretion system protein [Acidiphilium cryptum JF-5]
Length = 307
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 79/311 (25%), Positives = 143/311 (45%), Gaps = 6/311 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
AI ++F L+ + L +E++++ + + +R
Sbjct: 3 AAILWVPALFLLVSVTAVLMLRLVIVEEKLQRRIDRAAGTASGAAEKGGEAAQPIHVRIV 62
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L V + L + E + + LR AG R + +L + + +L+ +L ++
Sbjct: 63 M--GLGLAVARSGLLSPRTLEELRHTLRMAGIRDKGALALFVGTKLLSLTGLSVLSLLMS 120
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
V A ++ G P + I ++ ++ DALDL++IC +
Sbjct: 121 RFLHMTAG----HAVIAAVVGAIGGLLLPDIIIQQRRKRFIQKVEGGLADALDLMVICAD 176
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+S++ AL RVA ++ +++E LT E+ N + + RT +D ++
Sbjct: 177 AGLSLESALVRVAGELQLTHPAVAQEFTLTAQEMRIGGNIRDSLNALGVRTGLDSLKRLA 236
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQ+ +YGT + +LR L SE R E+L E++AA L LT+PMIIF LP + LV+
Sbjct: 237 STLIQTLQYGTPLTQALRTLSSELRQEQLTRFEERAARLPVLLTLPMIIFILPCVFLVVG 296
Query: 316 GPAILSIIDTM 326
GPA+L ++ +
Sbjct: 297 GPAVLKLLASF 307
>gi|302037432|ref|YP_003797754.1| pilus assembly protein TadC [Candidatus Nitrospira defluvii]
gi|300605496|emb|CBK41829.1| Pilus assembly protein TadC [Candidatus Nitrospira defluvii]
Length = 318
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/318 (22%), Positives = 142/318 (44%), Gaps = 10/318 (3%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ +++ + I + + ++ + + V R + + +
Sbjct: 6 MDVTITISLAAFLGCLIGIAGLGLYVAEHRKISRWRRRVEGVRGAEERVAFLASLWNQGR 65
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
L + + ++ N AG R + +L ++
Sbjct: 66 RLLLICGRR-------RTGPTREGEPLSLPNPFATAGLRGSDLPVLFQGAKLFGAVVCP- 117
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + Y L P + + G+ P +W+ ++ RQ +I A+PDALDL
Sbjct: 118 --LTCLSLYGLLANTPTFFPLILCMASALAGWYGPDLWLQRRIESRQRNILAAFPDALDL 175
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+++CVE+G+S+D A+ RV +++ LSEE+ EL +RQ A N R Q++
Sbjct: 176 MVVCVEAGLSLDVAITRVGQELQLMHRELSEELRALYLELRTGRSRQQALRNAGLRIQLE 235
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V++ L+Q++R+GTS+G +LR R+ + ++A + AA L KL +P+I F P
Sbjct: 236 EVQSFVALLVQTERFGTSVGQALRAHADGLRTRQDLQATEMAAKLPVKLLLPLIFFIFPS 295
Query: 310 LILVIIGPAILSIIDTMK 327
L++V++GPA + +I +
Sbjct: 296 LLVVLLGPAAIQVIRQLA 313
>gi|302343414|ref|YP_003807943.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
gi|301640027|gb|ADK85349.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
Length = 305
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 79/313 (25%), Positives = 143/313 (45%), Gaps = 15/313 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
++++ T +++ +A G +R+ + R ++
Sbjct: 7 ISISGATGLAVLLAFWACRTLGGGPDPARRRLDELLARNAPPRPAPA-----------IK 55
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R +++ K + L AGFRS +LN+ VRL + +
Sbjct: 56 KRLLGAVKALAPKSERGQGWEKSKLRQDLLTAGFRSVEALNVFTGVRLAAAFLLPAI--- 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+F L++ V + ++ +G+ P + L +R + I R P LDLL+I
Sbjct: 113 -VFALGVLIQAKRPAMVISTLIAAALGYLGPGYVLEKLALRRSALIARQMPSMLDLLVIA 171
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+ +D A++RV+ D+ S L+ E+ + EL R A N R +D +
Sbjct: 172 VESGLGLDAAVQRVSRDLAASSPVLAHELAIFSLELKLGAARGDALRNLAKRCGVDEMAG 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
LIQ+DR+G SIG S+RV + R++R + E++AA + KL P++ P ++ V
Sbjct: 232 LVAMLIQADRFGVSIGRSIRVFADDLRTKRRQKLEEQAAKIPLKLLFPVLFLIFPAIMAV 291
Query: 314 IIGPAILSIIDTM 326
+ GPA+++I++ M
Sbjct: 292 MAGPAVINIVEKM 304
>gi|254505024|ref|ZP_05117175.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
gi|222441095|gb|EEE47774.1| Bacterial type II secretion system protein F domain [Labrenzia
alexandrii DFL-11]
Length = 339
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/329 (20%), Positives = 131/329 (39%), Gaps = 30/329 (9%)
Query: 5 FFDLFDATEL---AVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQI 60
F+ F + AVAI S+ +IY + +PSL + + RM +V+ R Q
Sbjct: 3 VFEQFMTPAITGAAVAILVMFSVGGIIYGLFLPSLSGTKKRDARMSAVSA-----RPQSE 57
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVV 119
T + ++R + L++F ++ K + K+ AG E+ + L++
Sbjct: 58 TQRKTMRDTNRRKKSIQDQLKDFEERQKAKHEKQKNVPLKVKIEQAGL--EWEMRHLVLF 115
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+V I+F ++ +I + A G P +I N ++R ++
Sbjct: 116 SVVSAILFFVISLIASGNL-----------LIAAAFTFVGGIGFPRWYIGNKRKRRFNAF 164
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P+ +D+++ V++G+ + ++ VA + P++ E + A
Sbjct: 165 LNELPNGIDIIVRGVKAGLPLSDCVKVVAREARE---PVATEFRKVTETQVMGVSLAEAL 221
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+R + + + G + ++L L R + M+A+ KA S K +
Sbjct: 222 SKMPDRVPLPETNFLAIVVSIQQKAGGGLAEALGNLSRVLRQRKAMKAKIKALSSEAKSS 281
Query: 300 VPMIIFFLPVL---ILVIIGPAILSIIDT 325
II LP + IL I P + I+ T
Sbjct: 282 AA-IIGALPFVVGGILFFIAPDYMMILFT 309
>gi|260775648|ref|ZP_05884544.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260608064|gb|EEX34233.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 292
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 56/309 (18%), Positives = 124/309 (40%), Gaps = 24/309 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V + V++ + + + + + +K+ +++++ + + T
Sbjct: 4 IVLFISLVAVSAGVLFLGVLFFKTMAKKKKFRALSIG------GAADRVAHEEDQLNRET 57
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R L + ++ KL AG + L V+ + ++
Sbjct: 58 RWYGFL-----------YQENGDMEQKLERAGIYNNRWAGFYLPVKYTTAFVGVVA---- 102
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
Y L ++ + L P +++ + + Q I P LDL+ +CV
Sbjct: 103 --LYSSTLGITSMKQLAIIALWLIAVIVVPDLYLEHRRKVLQDKISNQLPYLLDLMAMCV 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G++++ +++ ++ ++ L M + A + Y R VR+
Sbjct: 161 QTGMTVEASIQYLSSELSALDKDLGHTMNIVNERSRL-VGLDQALDELYQRFPATEVRSF 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L QS RYG++I L L S+ R R++ E+K L K++VP+I+F L ++++I
Sbjct: 220 VMTLKQSLRYGSAIYSVLNNLASDIREVRVLALEEKIGKLSAKMSVPLILFILIPIVILI 279
Query: 315 IGPAILSII 323
P I+ ++
Sbjct: 280 AAPGIMRLM 288
>gi|170734860|ref|YP_001773974.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820898|gb|ACA95479.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 324
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 73/321 (22%), Positives = 150/321 (46%), Gaps = 6/321 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
++ + + + + V + +++R++ +
Sbjct: 1 MQNLSVVQVVMLGGLFIFVAGGVL-VAMLLFAPRGIQRRLQQAGG---TGAGGVAGAGDG 56
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ +SR + + K K + + +L AG+R++ + + + ++ +
Sbjct: 57 EDMASRWVAKLVELSSPISKLSVPKEGWENSPLRIRLMNAGWRNQSAAAVYFTAKTMLAL 116
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ + E + + +G+ P++ +S V+ RQ I +PD
Sbjct: 117 GLPCAALLALITTSLGDERALLSLILVAL--AGIGYYIPNIVLSQRVKVRQRKIFEDFPD 174
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D AL +V+E++ +S ++ E+ L + E+ ++ A N R
Sbjct: 175 ALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLLEMRSGFTKETALRNLALR 234
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + + LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I
Sbjct: 235 TGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFC 294
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L++V++GPA++ + +
Sbjct: 295 IFPALMMVLLGPAMIHVYRVL 315
>gi|319951073|ref|ZP_08024926.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
gi|319435233|gb|EFV90500.1| Type II secretion system F domain protein [Dietzia cinnamea P4]
Length = 300
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 16/314 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L+ A+ V S+ G + R ++VA R + + +
Sbjct: 3 LSAALAVFVLTASMFLLAFAVFSGRDTV--RARTVANLRRGIDDGFASQVDLTGVDDDDS 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + L +I AG +S+ L+V ++VVP+I ++LG+
Sbjct: 61 RSRLYEVARRLTPVGTVRRLEKLSIR-----AGRPRGWSIQRLVVAKIVVPLIVVLLGLA 115
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ P L + + V + P + + + Q+R I D LD + I
Sbjct: 116 LL------RTNPEPLLLLLTLGTAVVCYFLPELLLQSRGQERNDEIALELADTLDQMTIA 169
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ D A+ R + + PL++E++ T+ E+ R+ A+E RT + +R
Sbjct: 170 VEAGLGFDAAMARAGRN---GTGPLAQELIRTLQEIQVGQLRRTAYEQLALRTDVPDLRR 226
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+A+IQ+D YG S+ D LR SE R +R AE+KA + K+ P+++ LPVL +V
Sbjct: 227 FIRAIIQADAYGISVADVLRTQASEMRLKRRQRAEEKAQQVPVKVIFPLLVCILPVLFIV 286
Query: 314 IIGPAILSIIDTMK 327
++GP ++++++
Sbjct: 287 LLGPTVINMMEAFS 300
>gi|171320623|ref|ZP_02909643.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171094136|gb|EDT39223.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 314
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 80/284 (28%), Positives = 148/284 (52%), Gaps = 1/284 (0%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R + A ++ ++ ++ +R ++ L ++L + + + +L
Sbjct: 32 RRRIAARVQQAAGQRSLSLAAGRLQPGEVRQDLTRRLAQLGERLPVLDPMQRVKLGLQLT 91
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AGFR +++ ++ ++L ++F L I++ +L E+ F +R A++ +G
Sbjct: 92 RAGFRERRAVSTMIGIKLSCGVLFAGLAIVFSPYIPRLGEF-FVIRAVAMVGAFVIGVIV 150
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++E+
Sbjct: 151 PEYVLGAVIRRRRRIIAACFPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELT 210
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ EL+ N A +F R R+ L QS R+GT I +LR L R+E+
Sbjct: 211 VCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQ 270
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 271 VVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 314
>gi|78060306|ref|YP_366881.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
gi|77964856|gb|ABB06237.1| putative Flp pilus assembly protein TadC [Burkholderia sp. 383]
Length = 324
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 72/321 (22%), Positives = 142/321 (44%), Gaps = 6/321 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + + + + +++R++
Sbjct: 1 MQNLSVVQAVMLGGLFIFVAGGVL-IAMLLFAPRSIQRRLQQAGGAGATGAAGTGDGDDM 59
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
S S + K + + +L AG+R++ + + + + +
Sbjct: 60 ASRWVAKLVELSTPISKLS---VPKEGWENSPLRIRLMNAGWRNQSAAALYFTAKTALAL 116
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ + E + + +G+ P++ +S V+ RQ I +PD
Sbjct: 117 GLPCAALLVLITTSLGDERAILSAIL--VAFAGIGYYIPNIVLSQRVKVRQQKIFEDFPD 174
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D AL +V+E++ S ++ E+ L + E+ ++ A N R
Sbjct: 175 ALDLLTVCVEAGLGLDAALMKVSEELRFSSEVVASELDLLLLEMRSGFTKETALRNLALR 234
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + + LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I
Sbjct: 235 TGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFC 294
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L+LV++GPA++ + +
Sbjct: 295 IFPALMLVLLGPAMIHVYRVL 315
>gi|319782178|ref|YP_004141654.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168066|gb|ADV11604.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 316
Score = 133 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 65/318 (20%), Positives = 133/318 (41%), Gaps = 7/318 (2%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
F V+I V+ S + L + + K + ++ +
Sbjct: 1 MFSNIQDLGFLVSIAVFVAAVSFFLFGALVFLPALQTRKLVAQ-----SLMGEGITDRRS 55
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + + K + + + KL AGF + I + RLV
Sbjct: 56 MLGQDQLAKLAAQRPVDAYFKSIEKERE-EPNALEAKLFRAGFYQSTAPLIYTLSRLV-A 113
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L + + P + + L G PS+ + ++ +RA+P
Sbjct: 114 VCLGFLAMYALLSRVLPPHLPGFITLAGSALFGLACMVIPSILLDRFENSQKQIYRRAFP 173
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D +D+++ C ++G+S++ A+ RV+ ++ L ++ + +L + A +
Sbjct: 174 DFMDMMITCADAGMSLEGAVERVSHEMAATHKWLGIQLSIMNLQLRAGKPLREALRELAD 233
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R +D R QS+ GTS+ D+LRV +E R +R++ AE++A SL K+ +P+ +
Sbjct: 234 RIGLDEARALAVLFRQSEELGTSLTDALRVYSAEMRGQRILSAEERANSLPVKMMIPLGL 293
Query: 305 FFLPVLILVIIGPAILSI 322
PV+++VI+ P I+ +
Sbjct: 294 CIFPVVMMVIMLPVIIRM 311
>gi|186474108|ref|YP_001861450.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196440|gb|ACC74404.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 323
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 3/318 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
++ + +F + + L L++R+ +A + + +
Sbjct: 1 MQTEQILLLTAMFAIVFGAAW-KAMSLLRPDPLKRRIDGIAAASSGVAGMEGEPGVAEDE 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S +K + + K + + AG RS+ + + + ++ ++
Sbjct: 60 SPAWMETVAKVSHHVARLSLPKDDWDKSALRRRFANAGLRSDSAPALYFAAKTLLALVLP 119
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L ++ I L + +GF P+V +S LV+ RQ +I PDALD
Sbjct: 120 ALALVSITLLAGADGDKLLLVAALA--MAALGFYLPNVVLSRLVEARQRTIFEDLPDALD 177
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ +CVE+G+ +D A++RVAE+IG +S L +E+ L + EL R A N RT +
Sbjct: 178 LMTVCVEAGLGLDAAMQRVAEEIGVKSRALKDELELVLLELRAGSARDKALRNLALRTGV 237
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + T LIQ+DR+GTS+GDSLRV + R+ R + AE++AA + KL P++ P
Sbjct: 238 EDIDTLTSMLIQADRFGTSVGDSLRVFIDALRTRRRLRAEEQAAKIALKLLFPLMFCIFP 297
Query: 309 VLILVIIGPAILSIIDTM 326
LI+V+IGPA + + +
Sbjct: 298 TLIVVLIGPAAMRVAHQL 315
>gi|167836684|ref|ZP_02463567.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis MSMB43]
Length = 310
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 6/290 (2%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENI 98
+ +R++ VA R + ++ + R + + + + + +
Sbjct: 27 KRIAQRVRQVAA-----RTAAEVQVGASASVQPVSQRVKRRIALLGELVPILDAEQRTKV 81
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+L +AGFR ++++L ++L+V + LG+I + + F R +
Sbjct: 82 AQRLISAGFRDRRAVSVLAGLKLLVG-VGFALGMIVGASHVPRIGEYFVFRALMMAGAFM 140
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G P + ++++RQ I PDALDLL+IC +G S+ A++RVA ++ PL
Sbjct: 141 IGMMLPEFVLDLMIRQRQKRIAAYLPDALDLLVICTNAGNSLVVAIKRVASELKMICPPL 200
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
++E +T EL + A R + R L+QS +YGT I SLR L
Sbjct: 201 ADEFAVTADELQIGGDISSALNALAKRIAVPSTRALVTTLVQSQQYGTPITQSLRQLSRT 260
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
RS +++ E+KAA L PK+++PM++F +P + L+ GPAI+ +I
Sbjct: 261 ERSMQIVALEEKAAKLAPKMSLPMLLFIMPTVALIAAGPAIIRLIALFPK 310
>gi|284048519|ref|YP_003398858.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952740|gb|ADB47543.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 309
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/318 (20%), Positives = 139/318 (43%), Gaps = 12/318 (3%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L+++I A+ + + + + + E+++R+++ RE + Q+ D
Sbjct: 2 LALSLSIALALFFYLSLSVLALKKIQGEEVKRRLETF---REEEKPQEAEDNPNDLKKIP 58
Query: 72 LRTRDSKSLRNFVKKL--NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
L R L + + + ++ AG + + L+ + V I +
Sbjct: 59 LYQRTIGRLLAQAMDFFSKFAPSALPQMMEQRIILAGKQGIWKPRTLVGIWFVSMIFWGF 118
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G + G+ + + G P ++++++ RQ+ I R PD LDL
Sbjct: 119 QGFRYTTGHPM----STFGGLVLIWGCLLFGAMLPFGVLNHIIRNRQTKIIRQLPDVLDL 174
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L I V++G+S+D A+R+V E + G PL +E + ++ R+ + + R +
Sbjct: 175 LSISVQAGLSLDGAMRKVVERMEG---PLIDEFRRMLRDVRMGMTRRRSMQLMARRCDVQ 231
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V +++QS+R G S+ D+L + R R A +A K+ P++ P
Sbjct: 232 DVYLFVMSVVQSERLGASMSDTLVIQADNMRDLRRQRARTQAMKAPVKMIFPLVFCIFPA 291
Query: 310 LILVIIGPAILSIIDTMK 327
+ +V++ P+++S++ MK
Sbjct: 292 IFVVVLLPSLISLMQGMK 309
>gi|78062901|ref|YP_372809.1| type II secretion system protein [Burkholderia sp. 383]
gi|77970786|gb|ABB12165.1| type II secretion system protein [Burkholderia sp. 383]
Length = 314
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 74/284 (26%), Positives = 139/284 (48%), Gaps = 1/284 (0%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R + A R+ + S+ +R ++ L ++L + + + +L
Sbjct: 32 RQRIAARVRQAAGQHPPASVAGWLQPGGVRLDLTRRLAQLGERLPVLDPMQRVKLGLQLT 91
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AGFR ++++++ ++L + G I F +R A+I +G
Sbjct: 92 RAGFRERRTVSVMIGIKLSCG-VLFACGAIVFSPLIPRFGDYFVIRALAMIAAFVIGVIV 150
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++E+
Sbjct: 151 PEYVLGAMIRRRRRIIAACFPDALDLLVICTMAGNSLASGIRRVAHELARICPPLADELT 210
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ EL+ + +F R R+ L QS R+GT I +LR L R+E+
Sbjct: 211 VCADELTLSGDVAATLTHFAMRVDFTSARSLATTLTQSQRFGTPITQALRTLSRTERTEQ 270
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ E++AA L PK+T+PM++F LP + L+ GPA + +++ +
Sbjct: 271 IVALEERAAKLAPKITLPMMLFILPTVCLIAAGPAAIRLLEVFR 314
>gi|209515956|ref|ZP_03264817.1| type II secretion system protein [Burkholderia sp. H160]
gi|209503614|gb|EEA03609.1| type II secretion system protein [Burkholderia sp. H160]
Length = 316
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 1/273 (0%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
+R L+ + + L R K + +++ + + +L AGFR +++
Sbjct: 45 MRADSHPQLRAEEHVADLWQRLLKRFASLGERVPVGGAAQRNKLGEQLVRAGFRERRAVS 104
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+++ +L+ + L I I Y + F R + + VG P + ++ L+ +
Sbjct: 105 MMIGFKLLAGAL-FALAAIVIGPYVPRIGEYFVFRALMMGGVFIVGMILPEIALNALISR 163
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
RQ +I PDALDLL+IC +G S+ ++RVA ++ PL++E + EL +
Sbjct: 164 RQKAIASCLPDALDLLVICTNAGNSLVVGVKRVARELETICPPLADEFAVAGDELQVSGD 223
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A N R + VR LIQS +YGT I SLR+L R+ ++M E+KAA L
Sbjct: 224 SAGALRNLAARIGLPSVRALVTTLIQSQQYGTPITHSLRMLSRAERTAQMMALEEKAAKL 283
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+T+PM++F LP + L+ GPA++ +I K
Sbjct: 284 ATKMTMPMMLFILPTVGLIAAGPAVIRLIAVFK 316
>gi|147677788|ref|YP_001212003.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
gi|146273885|dbj|BAF59634.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
Length = 307
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 71/316 (22%), Positives = 133/316 (42%), Gaps = 14/316 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVA-VEREILRKQQITSLQKDSASSRL 72
+A+ +F +I + E+E R+ V LR+Q++ + L
Sbjct: 4 LIAVFIFTEVFLVILLLYNIISKERQEVESRVAKVVGSRTPTLREQELKAPLFQRIIKPL 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R S + + + + K+ AG + + LL ++ +
Sbjct: 64 LARLSLFMVKML------PAEKEAELAGKISRAGLSQKITPRELLALKYLAAAGT---AT 114
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + +G+ P + ++ + R+ I+++ PD +DLL +
Sbjct: 115 TLLITGKIMAGRSLFQIILLGTAGLALGWFVPELLLNKKILDRKKEIEKSLPDVMDLLTV 174
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
VE+G+S D AL +V E G LSEE + E+ R A + R +D +
Sbjct: 175 SVEAGLSFDGALMKVTEKKRG---VLSEEFTKMLQEIKIGRPRLEALRDLSRRLDVDDLS 231
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
A+I +D+ G SIG+ LRV + R +R AE+ A K+ +PM++F P + +
Sbjct: 232 AFAGAVILADQLGISIGNILRVQSDQIRMKRRQAAEEMAMKAPVKMLIPMVLFIFPAIFV 291
Query: 313 VIIGPAILSIIDTMKD 328
V++GPA++ I +
Sbjct: 292 VLLGPAVIQISKAFSN 307
>gi|115376389|ref|ZP_01463626.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
gi|115366596|gb|EAU65594.1| Flp pilus assembly protein TadC [Stigmatella aurantiaca DW4/3-1]
Length = 238
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 10/229 (4%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ KL AG S Y ++ ++ + +I LI+G+I G + L + +L
Sbjct: 15 SKMRRKLIKAGDPSGYKPEDIMALQEIGLVIGLIMGLILANGLSQHLAWS--------LL 66
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G P++W+++ V++R +I RA P LDLL + VE+G+ AL +V E G+S
Sbjct: 67 AALFGLYYPAIWVNDQVKRRHLAISRALPYNLDLLTLSVEAGLDFTAALSKVVE--KGKS 124
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL EEM + + +L R+ A + R + + ALIQ+D+ GTS+G LR+
Sbjct: 125 GPLKEEMSIVLKQLKMGKTREEALKAMILRVDLPSLTTFVTALIQADKMGTSLGKVLRIQ 184
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
++ R +R AEK A K+ P+I P + +V+ GP + +
Sbjct: 185 STQMRIDRTQRAEKLAGEAPVKMLFPLIACIFPTVFMVLFGPIVFQFMF 233
>gi|219883050|ref|YP_002478214.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219862056|gb|ACL42397.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 293
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 77/308 (25%), Positives = 144/308 (46%), Gaps = 17/308 (5%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+V++ V +P L R KS V RE L + S + +A R S
Sbjct: 3 ASVTLAIYAITVSVPLLLWCVFLGRDKSREVVRENLFRGFEESSKDSTAGRRW------S 56
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
L ++ + + + AG + + L ++ + V+ ++ +LG++
Sbjct: 57 LAATARRFTMPRAI--ARLDRLHALAGRPAAWPLERVIAAKPVLAVVAFLLGLLLY---- 110
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
P + VI + + P + + + Q+RQ I PD LD ++I VE+G+
Sbjct: 111 --TGRPGAPLMLLVIAVTVTAYFVPDLLLQSRGQERQKLIGLELPDTLDQMMIAVEAGLG 168
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
D A+ R + G PL+ E++ T+ ++ +R+ A+E RT + + ++++
Sbjct: 169 FDSAMARAGDKGKG---PLANELVRTLQDMQIGRSRREAYEALGERTSVPDLDAFIRSVV 225
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q+D YG SI LR E R +R AE+KA + K+ +P+++ LPVL + ++GPA+
Sbjct: 226 QADIYGISISKVLRTQAGEIRLKRRQRAEEKAMQIPVKVIIPLMLCILPVLFIALLGPAV 285
Query: 320 LSIIDTMK 327
L++I+
Sbjct: 286 LNVINQFG 293
>gi|254486463|ref|ZP_05099668.1| type II secretion system protein [Roseobacter sp. GAI101]
gi|214043332|gb|EEB83970.1| type II secretion system protein [Roseobacter sp. GAI101]
Length = 320
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 143/317 (45%), Gaps = 2/317 (0%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
L + + + + A+ + + R + + +
Sbjct: 1 MSDASLHIFWMAFAGLSTAMLALTVLLYLERQRSLRDARLRRANGTSQPRPTLDNATSPG 60
Query: 69 S-SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L + ++ ++L++ L +AG+RS +L I ++ VVP+
Sbjct: 61 MVGSLARQVRHTVATIGQRLSVVLGGEARETAADLASAGYRSRDALLIYAFLKTVVPMAA 120
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ G++W+ + + VI +++ + R I+ ++PD L
Sbjct: 121 LMAGLVWLGLTTPV-GIDMLIPAAMVIGTALALSKGVDMYVDLRRKNRLGRIRHSFPDML 179
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L++I E+G+ AL RVA+++ L+ EML ++E++ + + A+ R
Sbjct: 180 ELIVITSEAGLGPQPALHRVAQEMSLSHPELAREMLQMVSEMAMTNDCRGAYAKMNLRVP 239
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + TQ L QSDRYGT ++R L+ E R RLM E+KAA L +T+P+I +
Sbjct: 240 LPEIGIFTQTLDQSDRYGTPFSRAMRTLIIEQRGNRLMAIEEKAARLPVLMTLPLIFCIM 299
Query: 308 PVLILVIIGPAILSIID 324
P + +V++GPA+LS++D
Sbjct: 300 PAVFVVLVGPAVLSVLD 316
>gi|168699471|ref|ZP_02731748.1| probable secretion system protein TadC [Gemmata obscuriglobus UQM
2246]
Length = 307
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/310 (23%), Positives = 134/310 (43%), Gaps = 4/310 (1%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ AV + +L + L + + V R + R +++ + +
Sbjct: 1 MLALAVGGLAFGAVALGALAAVRLLEERPTHDVGRALRRLRELNGAAAPGDAGEAGGWLA 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+L ++ + ++L AG+R ++ + ++ +I G
Sbjct: 61 TVGAWLGSRLAFRSGARAVELADRLALAGYRHPSAVLCYGAAQ----LVLMIAPAATAGG 116
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
LE + + G G APSV + ++KRQ I+ A PDALD++++ VE G
Sbjct: 117 AAFTLEGAWNKVLLWAAAGGAAGLVAPSVLLGARIEKRQRLIRNALPDALDIMVLSVEGG 176
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S++ AL A++I L E+L+ E+ + AF+ F R + R+ A
Sbjct: 177 SSLNAALMWAADEIRDVHPVLGAELLVVQREVQLGLSMGDAFQGFARRCGIPEGRDLAAA 236
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LIQS++YG S+G +LR R +R AE+ A K+ PM++ P + +V++GP
Sbjct: 237 LIQSEKYGASVGKALRTFADSARQDRQAWAEEVAQKASVKVVFPMLLCIFPAIFIVLLGP 296
Query: 318 AILSIIDTMK 327
A + +
Sbjct: 297 AAVQMSQLFA 306
>gi|323702118|ref|ZP_08113786.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323533000|gb|EGB22871.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 310
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/321 (20%), Positives = 142/321 (44%), Gaps = 12/321 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDS 67
D A+ ++ I + G ++ +RM V +L ++I
Sbjct: 1 MDKWLYISAVLVFFTVSFSILVIYRFIFGERLQVVQRMDQVVGTPSLLPIREIELNVPLY 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ S+ + + + + K+ AAG ++ +V++ ++
Sbjct: 61 QRAIR--PALGSIAKLLTRFIPT--AREAALNKKVAAAGQPGNLNVREWMVLKYLLATTL 116
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + L+ + + +G+ +P ++++ +++R++ +++A PDAL
Sbjct: 117 G----FLLWSWGGLMSKSLPQCLLLAGVGVPLGWLSPDLFLNARIRQRKNQVEKALPDAL 172
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL + VE+G+ D AL +VAE + L++E +L + E R+ A + +R
Sbjct: 173 DLLTVSVEAGLGFDCALMKVAEQ---SNSVLADEFVLMMQECHMGKPRREALRDMADRVD 229
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D + ++I +D G SIG+ LR + R +R E+ A K+ PM++F
Sbjct: 230 VDDLSTFCGSIILADTLGISIGNILRTQSQQIRQKRRQRTEELAMKAPIKMLFPMVLFIF 289
Query: 308 PVLILVIIGPAILSIIDTMKD 328
P + ++++GPA L I+ +
Sbjct: 290 PAIFVILLGPAALQIMQAFNN 310
>gi|220922536|ref|YP_002497838.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947143|gb|ACL57535.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 303
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/313 (21%), Positives = 132/313 (42%), Gaps = 20/313 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V+ +S+ +L Y G + +RM++ E + + +K +
Sbjct: 9 MVSAAVFLSVAALTYLSTTYVGQRGTVRQRMRAARRTSEREHTPYLPAERKGRLEAIFGV 68
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+S R + L GF + ++ +L + I
Sbjct: 69 NESTIQRQRLD----------------LLRGGFFNPNAVEYFNFTKLTLVFALPICACAM 112
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + V + + P ++S + ++ + + A+PD LDLL++CV
Sbjct: 113 ---FAFRSDLSSLTKFALVSGSLLLAYYIPDAFVSRRQRLQKEAYRSAFPDMLDLLVVCV 169
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+S++ A RV ++ +S L + + +EL + R +D R+
Sbjct: 170 DAGLSLEAAFDRVGSEM-DESGALRVNLAIMASELRNGRGFVDGLQGLAERLDIDEARSF 228
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L QS GT I SLRV E R++R+M AE+KA +L K+ +P+ F PV+++V+
Sbjct: 229 AILLQQSLELGTDISQSLRVYSDEMRNKRMMRAEEKANALPVKIVLPLGAFIFPVILIVV 288
Query: 315 IGPAILSIIDTMK 327
+ P ++ II +
Sbjct: 289 MVPIVIRIIAVLG 301
>gi|221633000|ref|YP_002522225.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
gi|221157259|gb|ACM06386.1| type II secretion system protein [Thermomicrobium roseum DSM 5159]
Length = 303
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 9/289 (3%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK--AILVDENI 98
+R + V ER Q+ SL + R R L + L+ I
Sbjct: 22 RAERRQVVLEERLARFAQRPPSLDDLELAVPFRHRVILPLAERLAHFVLRFTPGASLHRI 81
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+L AG L +R + + I+ P Q RVG ++
Sbjct: 82 EQRLVEAGLDGSLRPLTFLGLRFGLALTMASFAIVLTLA----GSGPVQYRVGLPFVLAA 137
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P+ W+S + +R+ +I+RA PDA+DLL+I VE+G+ DQAL RV E L
Sbjct: 138 LGWIVPNAWLSRRIAQRKRAIQRALPDAIDLLVISVEAGLGFDQALLRVVEK---WDNEL 194
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ E T++E+ R+ A + R +D + +L+Q+D+ G SI LR ++
Sbjct: 195 TREFARTLSEMRMGIPRRQALRDLARRVNVDDLNVFIASLVQADQLGVSISQVLRAQANQ 254
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R R A++ A K+ PM+ P L +VI+GPAI I++ +
Sbjct: 255 MRLRRRQRAQELAHKAPIKMIFPMVFLIFPALYVVILGPAIPRIVEAFR 303
>gi|254255261|ref|ZP_04948577.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
gi|124900998|gb|EAY71748.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
Length = 324
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 74/321 (23%), Positives = 146/321 (45%), Gaps = 6/321 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + V + +A + +++R++ + +
Sbjct: 1 MQNLNVVQAVMLGGLFVFVAGGAFA-AMLLFAPRNIQRRLQQAGGASAAAAAGVGDAGEP 59
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ S + K + + +L AG+R + + + + V+ +
Sbjct: 60 AARWVAKLAELSTPISKLS---VPKDGWENSPLRIRLMNAGWREQSAAALYFTAKTVLAL 116
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
G + + L ++ + +G+ P++ +S V RQ I +PD
Sbjct: 117 ALP--GAVLLSVITTRFADERALLSVLLVALAGIGYYVPNLVLSQRVAARQQKIFEDFPD 174
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D AL +V+E++ +S ++ E+ L + E+ ++ A N R
Sbjct: 175 ALDLLTVCVEAGLGLDAALMKVSEELRFRSDVVAGELDLLLLEMRSGFTKETALRNLALR 234
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + + LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I
Sbjct: 235 TGVEDIESFCAMLIQADRFGTSISESLRVLSDLLRTRRRMRAEERAAKIALKLLFPLIFC 294
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L++V++GPA++ + +
Sbjct: 295 IFPALMVVLLGPAMIHVYRVL 315
>gi|59711125|ref|YP_203901.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
gi|59479226|gb|AAW85013.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
Length = 290
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 117/247 (47%), Gaps = 5/247 (2%)
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L ++K + +E I KLR AG+ + +++ + ++ V +I ++ I +
Sbjct: 46 ENELGGWLKNKASELNPDEEEIKQKLRQAGWENTQYVHLFMPIKYSVLLIGEVIFGIAYY 105
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
V A L AP +++ ++ R + P LDL+ +CV++
Sbjct: 106 ----QSFLSSTAWVIAASLWMVFVIIAPDMYLQAKIKARVHRVSTQMPYLLDLMAVCVQT 161
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G++++ +L + +++ G + L++ + + + E Y + +R+
Sbjct: 162 GMTVEASLSYLVKEMKGFNKDLTQVLTKMNERSRM-VGLEKSLEEMYVEIPSNEMRSFVM 220
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L QS YG+SI + L L S+ R +++E E++ L K++VP+I+F + ++++I
Sbjct: 221 TLTQSMHYGSSIYNVLTTLASDIREVQMLELEERIGKLAAKMSVPLIVFIMIPIVILIAA 280
Query: 317 PAILSII 323
P ++ ++
Sbjct: 281 PGVMRLM 287
>gi|269836553|ref|YP_003318781.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
gi|269785816|gb|ACZ37959.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
Length = 307
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 13/286 (4%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
+E+R+ L + ++ + L R + + F K + + +
Sbjct: 33 IEERLSQYGHRVPTLEELELQQPFNERVLKPLLRRLAGMMSRFAPKTSHQR------LRQ 86
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
KL AG + +R+++ +F + + + G +G
Sbjct: 87 KLVEAGNPANLGPAEFTGLRVLLAGGLGG----LLFVLFLMSGSSLTNLILFPAVAGGIG 142
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P VW+ N +++R+S+I RA PDA+DLL I VE+G+ D AL+RV E L+
Sbjct: 143 YLLPGVWLGNRIKRRKSAIIRALPDAIDLLTISVEAGLGFDPALQRVVEK---WDNELTR 199
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E ++E+ +R+ A + RT +D + A++Q+D+ G SI LRV + R
Sbjct: 200 EFARMLSEIRMGQSRREALRDLAERTNVDDLNVFVSAVVQADQLGVSITQVLRVQSKQMR 259
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R AE++A K+ PM+ P L +V++GPA+ + D
Sbjct: 260 MRRRQRAEEQAHKAPVKMIFPMVFLIFPALYIVLLGPAVPIVWDAF 305
>gi|148657456|ref|YP_001277661.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148569566|gb|ABQ91711.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 309
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/314 (19%), Positives = 126/314 (40%), Gaps = 8/314 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L + L+ A + + +R+ + + + R+
Sbjct: 2 LLIPGIITALAILLVVAGLTTVRRDVTVGERLDAYLSPTVEKMNPTPSLEATKPFAERVV 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K L + E + +L AG+ + + + I+ +++ ++
Sbjct: 62 IPLLKRAARAFAWLLPQN--RYEALRLRLAMAGYPWGVTAADFVGAK---GIVLVLVTLV 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
P + + IG+ F P VW+S +++RQ+ + A PDALDLL I
Sbjct: 117 AGAFGWMAGAAPTFFNLLLLGGIGFCAFFLPDVWLSRRIRQRQTELLNALPDALDLLAIA 176
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+G+S + A++ + + L+ E + ++S R+ A + RT + + +
Sbjct: 177 SAAGLSFESAMQEITSK---WTNELAREFSRVLRDMSMGVPRRQALTDMAERTGVSDIAS 233
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ Q++ G SIG L V E R+ R A+++A K+ P++ P + V
Sbjct: 234 FVSAVKQAEALGISIGRVLTVQADEMRTRRRQRAQERANQAPVKMMFPLVFLIFPAIFAV 293
Query: 314 IIGPAILSIIDTMK 327
++GPA+ +++
Sbjct: 294 LLGPAVPQLLEAFG 307
>gi|326797332|ref|YP_004315152.1| type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
gi|326548096|gb|ADZ93316.1| Type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
Length = 316
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 69/315 (21%), Positives = 144/315 (45%), Gaps = 3/315 (0%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
++ + + + ++ + + + + + SL ++ +
Sbjct: 4 QMILPALIGFFLCAAGMVLLALYVRTKPKTLAERLASQQDHASTTAHEASLLIEANMATS 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + + + + + L AG R SL + +L + L L +
Sbjct: 64 WWRKCLAPIDRIGQELVGTESDRFATRKLLLMAGLRHSQSLGLYTFGKLA---VGLFLSV 120
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+++F + + + ++I ++ + +W+ R + + PDALDL++I
Sbjct: 121 MFVFFVLEKGDRLSLSALAGSLIILFLSSFSAEIWLKMRAASRGGKLSSSLPDALDLMVI 180
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C E+G+ + + + V++++ S L+EE+ T AEL L +R A N +R +D V
Sbjct: 181 CAEAGLPLGRIFKTVSKELAFSSPELAEEIGYTHAELQILSDRSKALMNLADRCGVDNVA 240
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ++RYGT + +LR + E+R ++E E+KA L +L+VP+++F LP +I
Sbjct: 241 AMVSTLIQAERYGTPLSQALRTISVESRKNMVLELEEKAGKLPAQLSVPLMVFILPPVIA 300
Query: 313 VIIGPAILSIIDTMK 327
++ PA++ II +
Sbjct: 301 MMGTPAMIRIIRMLG 315
>gi|172062964|ref|YP_001810615.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171995481|gb|ACB66399.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 314
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 79/284 (27%), Positives = 147/284 (51%), Gaps = 1/284 (0%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R + A ++ ++ ++ +R ++ L ++L + + + +L
Sbjct: 32 RRRIAARVQQAAGQRSLSLAAGRLQPGEVRQDLTRRLAQLGERLPVLDPMQRVKLGLQLT 91
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AGFR +++ ++ ++L ++F I++ +L E+ F +R A++ +G
Sbjct: 92 RAGFRERRAVSAMIGIKLSCGVLFAGFAIVFSPYIPRLGEF-FVIRAVAMVGAFVIGVIV 150
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + ++++R+ I +PDALDLL+IC +G S+ +RRVA ++ PL++E+
Sbjct: 151 PEYVLGAMIRRRRRIIAACFPDALDLLVICTMAGNSLASGVRRVARELERICPPLADELT 210
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ EL+ N A +F R R+ L QS R+GT I +LR L R+E+
Sbjct: 211 VCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRFGTPITQALRTLSRSERTEQ 270
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+ K
Sbjct: 271 VVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIEVFK 314
>gi|107028240|ref|YP_625335.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116687151|ref|YP_840398.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|105897404|gb|ABF80362.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116652866|gb|ABK13505.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 324
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/321 (22%), Positives = 147/321 (45%), Gaps = 6/321 (1%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + + V + +++R++
Sbjct: 1 MQNLSVVQAVMLGGLFIFVAGGVL-VAMLLFAPRGIQRRLQQAGGTGAGGVAGAGDGDD- 58
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+SR + + K K + + +L AG+R++ + + + ++ +
Sbjct: 59 --MASRWVAKLVELSSPISKLSVPKEGWENSPLRIRLMNAGWRNQSAAAVYFTAKTMLAL 116
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ + E + + +G+ P++ +S V+ RQ I +PD
Sbjct: 117 GLPCAALLALITTSLGDERALLSLILVAL--AGIGYYIPNIVLSQRVKVRQRKIFEDFPD 174
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D AL +V+E++ +S ++ E+ L + E+ ++ A N R
Sbjct: 175 ALDLLTVCVEAGLGLDAALMKVSEELRFRSEVVASELDLLLLEMRSGFTKETALRNLALR 234
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + + LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I
Sbjct: 235 TGVEDIESFCAMLIQADRFGTSISESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFC 294
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L++V++GPA++ + +
Sbjct: 295 IFPALMMVLLGPAMIHVYRVL 315
>gi|322434108|ref|YP_004216320.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321161835|gb|ADW67540.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 302
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/314 (23%), Positives = 147/314 (46%), Gaps = 20/314 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
V+I + + + S + +R+ V K + L+
Sbjct: 5 FFVSILVLMFSAMGLAGSFLLLRNSRGITERVLQVTQG------GTGAIQPKHAVREELK 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +++ +L + + + + + AGFR+ + +I RL+ P ++ GII
Sbjct: 59 KKVFEAVHVVRARLGMN---ENAKLSERFQGAGFRTASARDIYFAARLIGPAAAIVFGII 115
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
Q +V ++++G + + AP + +S +V+ R+ I+ + PD +DLL+IC
Sbjct: 116 M-----------PQNKVFWMMMVGGILYLAPDIILSRMVKGRREKIRLSIPDMIDLLVIC 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V++G+ +DQA+ RV +++G + EE++ E R +++ RTQ+ +
Sbjct: 165 VDAGLGMDQAMLRVGQELGTTHPQIYEEIMQINREQRAGKLRLESWQAMAQRTQLPEIDG 224
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L+Q++R+GT I +L R +R AE+ AA K+ P+++F P + +V
Sbjct: 225 FVNMLMQNERFGTPIARALSTFGDNIRQKRRQRAEELAAKTTVKIIFPLVLFIFPSMFIV 284
Query: 314 IIGPAILSIIDTMK 327
++GPA +SI +
Sbjct: 285 LLGPAGISIARGLA 298
>gi|115358176|ref|YP_775314.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115283464|gb|ABI88980.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 314
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 83/303 (27%), Positives = 155/303 (51%), Gaps = 1/303 (0%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
L+ A V +L + R + A ++ ++ ++ +R ++ L
Sbjct: 13 LLLLIACVAAALATPGGGTRRRIAARVQQAAGQRSLSLAAGRLQPGEVRQDLTRRLAQLG 72
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
++L + + + +L AGFR +++ ++ ++L ++F I++ +L E+
Sbjct: 73 ERLPVLDPMQRVKLGLQLTRAGFRERRAVSAMIGIKLSCGVLFAGFAIVFSPYIPRLGEF 132
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
F +R A++ +G P + ++++R+ +I +PDALDLL+IC +G S+ +
Sbjct: 133 -FVIRAVAMVGAFVIGVIVPEYVLGAMIRRRRRTIAACFPDALDLLVICTMAGNSLASGV 191
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
RRVA ++ PL++E+ + EL+ N A +F R R+ L QS R+
Sbjct: 192 RRVARELQRICPPLADELTVCADELTLSGNVSEALAHFALRVNFSSARSLATTLTQSQRF 251
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
GT I +LR L R+E+++ E+KAA L PK+TVPM++F LP + L+ GPA + +I+
Sbjct: 252 GTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPMMLFILPTVGLIAAGPAAIRLIE 311
Query: 325 TMK 327
K
Sbjct: 312 VFK 314
>gi|325964118|ref|YP_004242024.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470205|gb|ADX73890.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
Length = 292
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 9/239 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L + + L AG + L +++ + ++ + ILG++ P
Sbjct: 62 RLTPSGYEAKLDRWLSLAGRPASLPLERVIIAKPLLALTGAILGLLMY------ASSPSA 115
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ + + + + P + I N KRQ I+ P+ LD LLI VE+G+ + A+
Sbjct: 116 QIIALGLFMSALLYFLPDLLIYNKGIKRQQEIELELPNTLDQLLISVEAGLGFEAAM--- 172
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A G LS+E++ T+ ++ RQ A++ +R+ + +R+ +A+IQ+D+YG
Sbjct: 173 ARAGGYGDGALSQELMRTLQDIQVGRPRQDAYQALADRSSVQDLRSFVRAVIQADKYGIG 232
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
I LR + R +R AE+KA L K+ P+++ PVL +V++GPA + I++
Sbjct: 233 IAKVLRTQAKQARVKRRQRAEEKAMKLPVKVLFPLLLCIFPVLFIVLLGPAAIKIVEAF 291
>gi|197335643|ref|YP_002155274.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
gi|197317133|gb|ACH66580.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
Length = 290
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 51/250 (20%), Positives = 116/250 (46%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ ++K + +E I KLR AG+ + +++ + ++ V +I ++ I
Sbjct: 43 KTKENEIGGWLKSKASELNPDEEEIKQKLRQAGWSNTQYVHLFMPIKYSVLLIGEVIFGI 102
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ V L AP +++ ++ R + P LDL+ +C
Sbjct: 103 AYY----QSFLSSTAWVITASLWMVFVIIAPDMYLQAKIKARIHRVSTQMPYLLDLMAVC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V++G++++ +L +A+++ G + L++ + + + E Y + +R+
Sbjct: 159 VQTGMTVEASLSYLAKEMKGFNKDLTQVLTKMNERSRM-VGLEKSLEEMYVEIPSNEMRS 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L QS YG+SI L L S+ R +++E E++ L K++VP+I+F + ++++
Sbjct: 218 FVMTLTQSMHYGSSIYSVLTTLASDIREVQMLELEERIGKLAAKMSVPLIVFIMIPIVIL 277
Query: 314 IIGPAILSII 323
I P ++ ++
Sbjct: 278 IAAPGVMRLM 287
>gi|227819312|ref|YP_002823283.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227338311|gb|ACP22530.1| TadC pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 313
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 64/298 (21%), Positives = 140/298 (46%), Gaps = 4/298 (1%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
+ +V+I + + E+ R + V V + ++ D A + L +++ +R +
Sbjct: 9 LIVFLSVLIFVVTASEVVFRRREVGVRLSEAGSRVASNDIGDGAIADLSDAENRLIRRYF 68
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
+ + + N+L AG+ S ++ +R +V I ++L L E
Sbjct: 69 E--ITRRDANANSTQNRLIRAGYFSANAVTTFHAIRAIVCIGMMVLT--VWAFNRFLPET 124
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + + + + F +++I ++ +R +PD +D+L++C+++G+S++ A
Sbjct: 125 SRLMTLVIAMFVAGMTFILVNIYIDRRGSAKEREYRRLFPDFMDMLIVCLDAGMSLEAAA 184
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
RVA + + + + + E+ + A N R ++D R+ QS+
Sbjct: 185 NRVAREFVSKRKDFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARSLAVLFRQSEEL 244
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GTS+ +LRV E R R++ AE+KA SL K+ +P+ F PV +++++ P ++ +
Sbjct: 245 GTSVTQTLRVYSKEMRDLRIVRAEEKANSLPIKMLLPLGAFLFPVSLVIVLVPIVIRV 302
>gi|90419768|ref|ZP_01227677.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
gi|90335809|gb|EAS49557.1| putative Flp pilus assembly protein TadB, type II/IV secretion
system [Aurantimonas manganoxydans SI85-9A1]
Length = 335
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 53/316 (16%), Positives = 121/316 (38%), Gaps = 21/316 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + ++ +L +A + P + + ++ + R+ + + + R
Sbjct: 7 ILFILFSTIAAGALAFAFLQPRIAKERKVENRRAQYTRDDTERRSLKVARDRLKEQDKRR 66
Query: 74 TRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
SL+ + + + +L AG+ S+ +++ +V+ ++ L +
Sbjct: 67 KTIQSSLKELESRQKERDKHTGKLTLQRQLEQAGW--TMSVKQFVLLSIVMGVVSLFVAA 124
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I+ + + + G P +S +KR +P+A+DL++
Sbjct: 125 IFGAPL-----------LLLIGAVVVGGLGLPRFLLSRARKKRFHKFGEEFPNAIDLIVR 173
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V+SG+ ++ LR V+ G P+ E I A E Y
Sbjct: 174 GVKSGLPLNDTLRIVS---GETLDPVRSEFRKIIESQQMGVPISEAVEKLYRNIPTPEAN 230
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L + R + M A+ +A S+ K + II LPV++
Sbjct: 231 FFAIVIAIQSQAGGNLSEALGNLSNVLRDRKKMRAKVQAMSMEAKASGG-IIGALPVVVA 289
Query: 313 VIIG---PAILSIIDT 325
++ P +S++ T
Sbjct: 290 GLVYITTPDYISVLFT 305
>gi|313902406|ref|ZP_07835809.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467337|gb|EFR62848.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 326
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 68/314 (21%), Positives = 128/314 (40%), Gaps = 8/314 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + A++ PS KR++ + + + + L + + LR
Sbjct: 18 LLWLVFMIVALTTLALLAPSEAEHIARKRLRDLRLRGVPPDQAEQEELARPFSQRVLRPA 77
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII--FLILGII 133
+ + + V L AAG L + + G
Sbjct: 78 WERMVEAAERW---TPQGVAARWERLLAAAGRPLGLGTLAFLKAAGAAAGLVPGWVAGGW 134
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G + L G+ P + +R+ + RA PD +DLL +
Sbjct: 135 LAAGMSGAGAAGAAFQPVVAALGAATGWILPDAALKARATRRKRQLARALPDVMDLLSVA 194
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ +D A+++V E P+S E + EL +R+ A + +R ++ +R+
Sbjct: 195 VEAGLGLDGAVQKVTEKFP---APVSTEFRQYLKELRLGVSREEALRSLADRAELPELRS 251
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+IQ+DR G S+ LRV + R +R AE++A K+ +P+++F P L +V
Sbjct: 252 FAAAVIQADRLGVSLARVLRVQAEQLRFQRKQRAEEQAMKTPIKMLLPLVLFIFPTLFIV 311
Query: 314 IIGPAILSIIDTMK 327
++GPA++ I+
Sbjct: 312 LLGPALIQILSAFA 325
>gi|83747913|ref|ZP_00944945.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
[Ralstonia solanacearum UW551]
gi|207739454|ref|YP_002257847.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
gi|83725446|gb|EAP72592.1| TRANSMEMBRANE TIGHT ADHERENCE TADC RELATED PROTEIN; tadC2
[Ralstonia solanacearum UW551]
gi|206592830|emb|CAQ59736.1| pilus assembly protein tadc [Ralstonia solanacearum IPO1609]
Length = 326
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 57/325 (17%), Positives = 124/325 (38%), Gaps = 15/325 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVI-PSLGSGELEKRMKSVAVEREILRKQQITSL---- 63
D L +++T A + + V++ L +++ + + Q
Sbjct: 1 MDDALLTLSLTAATAGLLVFGGVLVHAVLTRYRSARKLDTALTDVRTAGTQAAAPAGTPL 60
Query: 64 --QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
K A ++ + + L +V E L G+ E + + R+
Sbjct: 61 PVPKPRAQAQQLQQQVAKVGQRWIDTGLGQRIVTEEDRRLLEECGYYGEQARTVFGGTRI 120
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++P +LG+++ F + +G+ P ++ + R+ +
Sbjct: 121 LLPPFLCVLGVLYAAA--------FWKALLWGFAGFALGYLGPKWLLTRRKESRRRRVDD 172
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+SIDQ+L+ +A + G L+ E + + R+
Sbjct: 173 ELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQTLLR 232
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ ++ L Q DR+G ++ + LR + R +++ L K+TV
Sbjct: 233 IAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMTVV 292
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
M++ LP L+++ GP +S+ T+
Sbjct: 293 MVLTLLPALLIITAGPGFVSVTRTL 317
>gi|300694107|ref|YP_003750080.1| type II secretion system protein [Ralstonia solanacearum PSI07]
gi|299076144|emb|CBJ35457.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
Length = 324
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 58/323 (17%), Positives = 128/323 (39%), Gaps = 13/323 (4%)
Query: 9 FDATEL---AVAITTAVSIFS--LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
D + L A T + +F ++AV++ +L+ + V +
Sbjct: 1 MDDSLLTLSLTAATAGLLVFGGIAVHAVLMRYRSVRKLDTALSDVRTAGTQAAAPAGAPV 60
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
K ++ + + +L +V E L A G+ E + + R+++
Sbjct: 61 PKPRPQAQQLQQQVAKVGERWIDTSLGHRIVTEEDRKLLEACGYYGEQARTVFGGTRILL 120
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P + ++G+++ K + +G+ AP ++ + R+ +
Sbjct: 121 PPLLCVVGVLYAGELGK--------ALLWGFAGFALGYLAPKWLLARRKESRRRRVDDEL 172
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +D+L + G+SIDQ+L+ +A + G L+ E + + R+
Sbjct: 173 PAMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPREQTLLRIA 232
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ L Q DR+G ++ + LR + R +++ L K+TV M+
Sbjct: 233 RLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMTVVMV 292
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ LP L+++ GP +S+ ++
Sbjct: 293 LTLLPALLIITAGPGFMSVTRSL 315
>gi|300697738|ref|YP_003748399.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
gi|299074462|emb|CBJ54012.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
Length = 326
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 124/325 (38%), Gaps = 15/325 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVI-PSLGSGELEKRMKSVAVEREILRKQQITSL---- 63
D L +++T A + + +++ L +++ + + Q
Sbjct: 1 MDDALLTLSLTAATAGLLVFGGILVHAVLTRYRSVRKLDTALTDVRTAGTQAAAPAGTPL 60
Query: 64 --QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
K A ++ + + L +V E L G+ E + + R+
Sbjct: 61 PVPKPRAQAQQLQQQVAKVGQRWIDTGLGQRIVTEEDRRLLEECGYYGEQARTVFGGTRI 120
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++P +LG+++ F + +G+ P ++ + R+ +
Sbjct: 121 LLPPFLCVLGVLYAGA--------FWKALLWGFAGFALGYLGPKWLLTRRKESRRRRVDD 172
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+SIDQ+L+ +A + G L+ E + + R+
Sbjct: 173 ELPVMVDMLRLLQGVGLSIDQSLQVIANEFYGMLPVLAGEFGRANQQFASGRPREQTLLR 232
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ ++ L Q DR+G ++ + LR + R +++ L K+TV
Sbjct: 233 IAKMFDSEDLKGLITLLTQVDRFGGAVQEPLRQFGVRLQENRRSRLKERVGKLTVKMTVV 292
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
M++ LP L+++ GP +S+ ++
Sbjct: 293 MVLTLLPALLIITAGPGFVSVTRSL 317
>gi|209886534|ref|YP_002290391.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
gi|209874730|gb|ACI94526.1| type II secretion system protein [Oligotropha carboxidovorans OM5]
Length = 325
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 56/319 (17%), Positives = 124/319 (38%), Gaps = 26/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ LA+A +AV++ L + + P+L ++ + R + I + +
Sbjct: 1 MNLQTLAIAFMSAVTLGGLAWVFLYPALSGER-----QAEKRRASLARPENIARRVERNP 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + +L++ + + +L AG ++ ++ V+ I
Sbjct: 56 QRSRREQVEDTLKDVENR---AKQAKKVPLNIRLEQAGV--NWTKRQFMIGSAVLGIATF 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I + + + G GF P ++ L ++R+ A PDA+D
Sbjct: 111 LLFYIVDANF-----------LATIAFAGAAGFGLPRWVLNFLKKRREKKFLDALPDAVD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ V++G+ + +L+ V PL E I S A Y R +
Sbjct: 160 VIVRGVKAGLPLFDSLKVVVN---DSPEPLRSEFRAIIETQSIGMPLGEACMRLYERMPL 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M+A+ +A S+ K + +I P
Sbjct: 217 PEANFFGIVVGIQMKSGGNLSEALGNLSKVLRDRKKMKAKIQAMSMEAKASAGIIGSLPP 276
Query: 309 VLILVI--IGPAILSIIDT 325
+++++ + P +S++ T
Sbjct: 277 AVMMIVYFMSPDYISLLWT 295
>gi|295395216|ref|ZP_06805424.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971978|gb|EFG47845.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 312
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 51/310 (16%), Positives = 125/310 (40%), Gaps = 9/310 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + A+ +V + + + +P + LE R+ ++ ++ + ++
Sbjct: 4 IDHPLVIGALGLSVGLSLTFFVLSLPVMRRPRLEDRIGPYLRTTQVAEEKYHLTAPTETG 63
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L + +++ + D ++ +L G ++++ ++++ I L
Sbjct: 64 FGGLARHFAHRALHWLN----SRMTTDVSVTLRLSKLG--PSHTVDSFRARQVLLIIAGL 117
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++G + + + V ++L G G ++ V+KR+ I +P +
Sbjct: 118 VVGALMCTVIIVARGFNPVVCVVLIVLGGVGGHFLNDWLLTQAVKKREERILAEFPTIAE 177
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + + +G AL RV + LS+E+ + +A+ + A + RT +
Sbjct: 178 LLALSITAGEGTVDALNRVCH---TATGELSDELRIALAQARTGTSLVDALDAMARRTNI 234
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ L + GT + + LR ++ R E + + + + VP+++F LP
Sbjct: 235 QSLIQFVDGLAIALSRGTPLSEVLRAQAADVREEGRRKLMELSGKKEVGMLVPVVLFVLP 294
Query: 309 VLILVIIGPA 318
+ +L + P+
Sbjct: 295 ITVLFAVYPS 304
>gi|83720640|ref|YP_442975.1| type II secretion system protein F [Burkholderia thailandensis
E264]
gi|83654465|gb|ABC38528.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis E264]
Length = 290
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 1/265 (0%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 27 PADDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVV 86
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ ++ +Y F LRV + +G P + V +RQ +I
Sbjct: 87 GACAGLAALVVGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYL 145
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLL+IC +G S+ A+RRVA ++G PL++E + EL + A
Sbjct: 146 PDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMA 205
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM+
Sbjct: 206 ARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMM 265
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+F +P + L+ GPA++ +I
Sbjct: 266 LFVMPTVALIAAGPAVIRLIAVFHK 290
>gi|86748903|ref|YP_485399.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
gi|86571931|gb|ABD06488.1| type II secretion system protein [Rhodopseudomonas palustris HaA2]
Length = 324
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/319 (18%), Positives = 122/319 (38%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ LA+ AVS+ L + + P L K R + + Q + +
Sbjct: 1 MEMQSLALGFLAAVSVGGLAWVFIYPLLSGE------KQAEQRRTSVARTTPAVRQIEKS 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + SLR + + + ++ KL AG +++ N + V + +
Sbjct: 55 QRSRREQVEGSLREIEARSQKQK---NVSLGTKLTQAGL--DWTPNKFIGVSAGLGTVAF 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+I G + AV L GF P + L ++R+ A PDA+D
Sbjct: 110 ATTMILGGGL-----------LAAVGLAFAAGFGLPRWVLGFLKKRREKKFINALPDAVD 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ +++G+ + +L+ VA PL E I + A Y+R +
Sbjct: 159 VIVRGIKAGLPLFDSLKVVA---ADSPEPLKSEFNAIIETQAIGMPLGEACARLYDRMPL 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M + +A S+ K + +I P
Sbjct: 216 PEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAAIIGSLPP 275
Query: 309 VLILV--IIGPAILSIIDT 325
+++L+ + P ++++ T
Sbjct: 276 IVMLLVYLSTPDYIALLWT 294
>gi|260462613|ref|ZP_05810819.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259031519|gb|EEW32789.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/280 (21%), Positives = 121/280 (43%), Gaps = 2/280 (0%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
VE+ +L + + R + + + + L + + KL AG
Sbjct: 43 RRLVEQSLLSEGITNRRSLYAQQELNRISAKRPVDAYFRTLEKERG-EPNALEAKLFRAG 101
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
F + I + RL + LG + + P LIG PS+
Sbjct: 102 FYQASAPTIYTLTRLGAVCVGF-LGTYAVLTAVLPPQVPGFAAFAGAALIGLGCLVIPSI 160
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ ++ +R +PD +D+++ C ++G+S++ A+ RV ++ G L ++ +
Sbjct: 161 ALDRFENGQKRIYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIMT 220
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+L + A +R ++ R QS+ GTS+ D+LR+ E R +R++
Sbjct: 221 LQLRAGKPLREALRELADRIGLEEARALAVLFRQSEELGTSLTDALRIYSDEMRGQRILH 280
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
AE++A +L K+ +P+ + PV+++VI+ P I+ +
Sbjct: 281 AEERANALPVKMMIPLGLCIFPVVMMVIMLPLIIRMKGVF 320
>gi|299132290|ref|ZP_07025485.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
gi|298592427|gb|EFI52627.1| Type II secretion system F domain protein [Afipia sp. 1NLS2]
Length = 323
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/319 (17%), Positives = 118/319 (36%), Gaps = 28/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
LA+A +AV++ L + + P L ++ ++ E ++ D
Sbjct: 1 MKIQTLAIAFMSAVTLGGLAWVFLYPLLSGERQAEKRRASFSRTEAATRRI------DRN 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + +L++ + + +L AG +S ++ + ++
Sbjct: 55 QRSRREQVEDTLKDVEDR---AKQAKKVPLNTRLAQAGV--SWSRRQFIIGSAALGLLVF 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + L G P +S L ++R+ A PDA+D
Sbjct: 110 FICFV------------TANLIATAALALSAGLGLPRWVLSYLKRRREKQFLEALPDAVD 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ V++G+ + +L+ V PL E I S A Y R +
Sbjct: 158 VIVRGVKAGLPLFDSLKVVVN---DSPEPLRSEFRAIIETQSIGMPLGEACMRLYERMPL 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M A+ +A S+ K + +I P
Sbjct: 215 PEANFFGIVIGIQTKSGGNLSEALGNLSKVLRDRKKMRAKIQAMSMEAKASAAIIGALPP 274
Query: 309 VLILV--IIGPAILSIIDT 325
V++++ I+ P +S++ T
Sbjct: 275 VVMIIVYIMSPDYISLLWT 293
>gi|167581954|ref|ZP_02374828.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis TXDOH]
Length = 271
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 1/265 (0%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 8 PADDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVV 67
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ ++ +Y F LRV + +G P + V +RQ +I
Sbjct: 68 GACAGLAALVVGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYL 126
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLL+IC +G S+ A+RRVA ++G PL++E + EL + A
Sbjct: 127 PDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMA 186
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM+
Sbjct: 187 ARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMM 246
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+F +P + L+ GPA++ +I
Sbjct: 247 LFVMPTVALIAAGPAVIRLIAVFHK 271
>gi|134291849|ref|YP_001115618.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135038|gb|ABO59363.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 327
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/321 (23%), Positives = 145/321 (45%), Gaps = 3/321 (0%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ + + + A + L++R++ + + +
Sbjct: 1 MQNLSVVHTVMLAGLFLFVAGGVLA-AMLLFAPRNLQRRLQQASGASVAVGAAGAGADDA 59
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ R R + + K + + + +L AG+R + + + V+ +
Sbjct: 60 GAPGPRWIARLVELSQPISKLSVPQDGWENSPLRVRLMNAGWRDPSAAGLYFTAKTVLAL 119
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ + + + + +G+ P+ +S + KRQ +I +PD
Sbjct: 120 ALPGAALLALATTRLADQRMLLSFILVAL--AGIGYYLPNFVLSRRITKRQRTIFEDFPD 177
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL +CVE+G+ +D AL RV+E++ +S +S E+ L + E+ + A N R
Sbjct: 178 ALDLLTVCVEAGLGLDAALMRVSEELRFRSEVVSGELDLLLLEMRSGFTKDTALRNLALR 237
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T ++ + + LIQ+DR+GTS+ +SLRVL R+ R M AE++AA + KL P+I
Sbjct: 238 TGVEDIESFCAMLIQADRFGTSVAESLRVLSDMLRTRRRMRAEERAARIALKLLFPLIFC 297
Query: 306 FLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA++ + +
Sbjct: 298 IFPALMGVLLGPAMIHVYRVL 318
>gi|218461576|ref|ZP_03501667.1| putative component of pilus protein [Rhizobium etli Kim 5]
Length = 165
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 109/165 (66%), Positives = 135/165 (81%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
AP+++ISN + KRQ SIKRAWPDALDL+LICVESGISI+ A+RRV+E++G QS L+EE
Sbjct: 1 YAPNIYISNRMGKRQHSIKRAWPDALDLMLICVESGISIEAAMRRVSEELGEQSPALAEE 60
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
M+LT AELSFLP+R+VA EN RTQ++ VR+ TQALIQ+DRYGT + +LRVL E R
Sbjct: 61 MVLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYGTPVAQALRVLAQEGRD 120
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 121 ERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVADKF 165
>gi|323341960|ref|ZP_08082193.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464385|gb|EFY09578.1| flp pilus assembly protein TadC [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 306
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/315 (21%), Positives = 135/315 (42%), Gaps = 12/315 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ AIT A+ + + V+ G ++KR+ + + R
Sbjct: 1 MIKAITGAIFAYVFVDFVMSVLTGKSLVIKKRLDETKNSSSQKHGSD--DILDKTFQERF 58
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
L + V + + ++L AG + + +++ + F ++G+
Sbjct: 59 LQPIVDKLIHAVSTMLPVKAESQLKLADRLLKAGI--TTNPKDYRAMNVIIIVGFGLVGL 116
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ R+ +++ G+ + + KR+ IK P+ +D+L +
Sbjct: 117 YLAITSHQRG----FSRIMYMMMGMAGGYVYRRYSLEGKITKRKKIIKGQLPEVMDILSV 172
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V +G+S DQAL V PL EE + E+ R+ A RT+++ V+
Sbjct: 173 SVVAGLSFDQALGHVTTK---AEGPLIEEFRICQREIMLGKPRKEALNRLSERTEIEEVK 229
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ T A+IQ+D G S+ + L R+ + E++AA + K+ +PM++F PV+ +
Sbjct: 230 SFTNAIIQADELGISLQNVLMSQSQMIRTSHRQDVEERAAKIPVKILIPMVLFIFPVIFI 289
Query: 313 VIIGPAILSIIDTMK 327
+++GPA+ +IID +
Sbjct: 290 ILLGPAVPTIIDALG 304
>gi|311743553|ref|ZP_07717359.1| type II secretion system protein F protein [Aeromicrobium marinum
DSM 15272]
gi|311312683|gb|EFQ82594.1| type II secretion system protein F protein [Aeromicrobium marinum
DSM 15272]
Length = 298
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/314 (21%), Positives = 144/314 (45%), Gaps = 18/314 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ V T + + V + + + + + R + V VE + +RL+
Sbjct: 1 MIVIAVTLLGLSLAALCVALGLIQTTDAKTRERLVGVESGGVHVANDGRT----GLARLQ 56
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ V + L+ + L AG+ + ++ +L++++ P+I +
Sbjct: 57 FEGPEDAARLVIPMRLR-----TRLERNLMLAGYPAGWTWQKILILKIAAPLILAVA--- 108
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + V + P + +S+ ++RQ++++ PDALD ++I
Sbjct: 109 ---MREFAFSEFSMVNTTVGVGSVIVAYLLPDLLLSSRARERQAAMELELPDALDKIVIS 165
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ESG+ + AL AE G ++E++ T+ ++ R+ A+E NRT+ + +R
Sbjct: 166 LESGLGFESALMNAAETGKG---DFADELVRTLQDIQVGMPRRAAYEALVNRTESEDIRR 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++LIQ++ G S+ +R ++ R +R + AE KA + KL P+I PVL ++
Sbjct: 223 FVRSLIQAEETGVSVSTVVRNQSADMRMKRKLRAEGKAQQVSVKLLFPLIFCLFPVLFVI 282
Query: 314 IIGPAILSIIDTMK 327
++ P +++ I+ K
Sbjct: 283 VLAPGVMTAIEGFK 296
>gi|171321820|ref|ZP_02910723.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171092891|gb|EDT38141.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 330
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/319 (18%), Positives = 129/319 (40%), Gaps = 8/319 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L V + +++ A L++RM ++ + + + D+ +
Sbjct: 16 LGVLLLGMLAVLRASAATRAERALVDALDRRMAALDAAKTRVTPNAEAPAKPDARGGQRV 75
Query: 74 TRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R + L + L +V + L G+ + + L R+ ++ +L
Sbjct: 76 ARFLERLSTAGMRWLDTGLGKHIVADEDRRLLEQCGYVDARTRGLFLSARIACGLVLPLL 135
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ G K + V + ++ +GF P +++ R+ S+ P +D+L
Sbjct: 136 FALFASGRLKGSHW-----VIGMFVVFGLGFMLPKLYVKRRAAARRQSVVDELPLFVDML 190
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ G+S+DQ+L+ V D G LS E+ + R+ + + +
Sbjct: 191 RLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRHFVAGRTREQSMQRLSGGFDNED 250
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R + ++Q D++G ++ + L+ R R ++ L K+T M++ LP L
Sbjct: 251 LRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPAL 310
Query: 311 ILVIIGPAILSIIDTMKDH 329
++V GP +L+++ + H
Sbjct: 311 LIVTAGPGMLAVMRALSHH 329
>gi|255658710|ref|ZP_05404119.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
gi|260849099|gb|EEX69106.1| putative type II secretion system protein [Mitsuokella multacida
DSM 20544]
Length = 307
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/313 (17%), Positives = 128/313 (40%), Gaps = 9/313 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++ +F ++ ++ + ++ ++ + +
Sbjct: 4 LLFVLSLTAVLFLILLGLIRSKVQPKSTMRQRIESLETLDVQPGAFGQPQAAQPEARKPA 63
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ L L + I ++ AG E+ + ++ ++ +
Sbjct: 64 GGIKQMLGALATTLTPLRL--RPIIQKRIMLAGKSREWGVAEFFGSC----LLGAVVMWL 117
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + Y + V L+G +G P V+++ +Q+RQ I+ P+ LDLL +
Sbjct: 118 FALVMVRTATYAPVQKAMMVFLLGLLGGLMPVVFLNTTIQRRQKQIEHQLPEVLDLLCVS 177
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V++G+S D AL ++ + G P +E ++ R+ A + +R ++ V
Sbjct: 178 VQAGLSFDAALSKITARMKG---PFIDECRRMQDDIRMGVVRRTAMRSMADRCGLEDVSL 234
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++IQ++R GTS+G +L+ R R + +A K+ P+++F P + +V
Sbjct: 235 FMTSIIQAERLGTSMGKTLKNQADNIRERRRQYVKAQAMKAPVKIVFPLVLFIFPAIFVV 294
Query: 314 IIGPAILSIIDTM 326
+ P++L ++ +
Sbjct: 295 TLVPSLLYLLKNL 307
>gi|294102185|ref|YP_003554043.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293617165|gb|ADE57319.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 296
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 14/276 (5%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
LR + + S R+ + + + + + AG
Sbjct: 34 RALRFAEEWDDETASFRERVVDPLRAKISRIGRFFFPQEAI--ARMDRYCLLAGRPRGLR 91
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+L +++ +I ++ I P R+ I++G +G+ P +WI+N
Sbjct: 92 GEVLAGLKVSFALILAMVSFFLI---------PDPFRISGAIILGALGYMIPGLWITNKG 142
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ + PD +DL+++ VE+G+ +D A+ RVA+ + G P+ E + E+S
Sbjct: 143 KQRQVEARNQLPDVMDLMVVSVEAGLGLDAAMSRVADRLRG---PMGENFARALHEISLG 199
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+RQ AF R ++ VR+ +LIQ++ G ++ + LR + R ++AE+ A
Sbjct: 200 ESRQAAFRGIMERLPIEEVRHFIASLIQAEELGVAVSEVLRSQAGTLKRLRRLKAEEHAR 259
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+ PMI+F P L +VI+GPA LSI++T+
Sbjct: 260 KAPIKILFPMILFIFPSLFVVILGPAFLSIMETLAK 295
>gi|153008063|ref|YP_001369278.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
gi|151559951|gb|ABS13449.1| type II secretion system protein [Ochrobactrum anthropi ATCC 49188]
Length = 337
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/316 (14%), Positives = 110/316 (34%), Gaps = 21/316 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + V+ +L YA+ LG + R R + +++ + R
Sbjct: 9 VMFIVLAVVACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQKRR 68
Query: 74 TRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ ++++ + + + L AG +L + V + + +
Sbjct: 69 KQLQDNIKDLEARQKQREKNQKYPPLRILLAQAGL--SLTLQKFYIYSGVAAFLATFIAL 126
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I+ L + F P ++ ++R +P+ALD+++
Sbjct: 127 IFGAPLLFLPG-----------IAIAGFFGLPRWFVLQKRKRRLKKFLEEFPNALDVIVR 175
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+G+ ++ LR +A P+ E + + A +
Sbjct: 176 ATRAGLPLNDGLRLIAS---EAVEPVKSEFKKVVEAQQIGLSIPEAVGKMPDSMPCPETN 232
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L R + M+A+ A S+ K + II LP +++
Sbjct: 233 FFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVDALSMEAKASAA-IIGALPFIVM 291
Query: 313 VII---GPAILSIIDT 325
V++ P ++++ T
Sbjct: 292 VLVYLTSPQYMTLLFT 307
>gi|197123313|ref|YP_002135264.1| type II secretion system protein [Anaeromyxobacter sp. K]
gi|196173162|gb|ACG74135.1| type II secretion system protein [Anaeromyxobacter sp. K]
Length = 306
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/273 (25%), Positives = 136/273 (49%), Gaps = 4/273 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+ + +A+ + + L+ + + + + +L AG R +
Sbjct: 30 RREADPVVRRLRATAAGAVDGDPALQLQPGLAAVEGDSSEGGSRLRRELVWAGIRRAGAP 89
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ ++ + + + L P + + LI + F P++W+ + VQ
Sbjct: 90 QGFVAAKM----ALATVALTGFAALNALRTEPVRTGLPMAALITGIAFFLPNLWLRSRVQ 145
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
RQ+ + R+ PDALDLL+ CVE+G+ +D AL+RV++++ LS+E+ L E+
Sbjct: 146 ARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFLEVKAGI 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R AF RT +R+ + L Q++ +GTS+G +LR+ R R+ AE+KAA
Sbjct: 206 PRIAAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRAEEKAAY 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K+++P+++ LP + V++GPA++++ D +
Sbjct: 266 VSVKMSLPLVLCILPCVFAVVLGPAVVNMADRL 298
>gi|253687073|ref|YP_003016263.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753651|gb|ACT11727.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 319
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/275 (24%), Positives = 138/275 (50%), Gaps = 4/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
Q+ + + S L + + + ++L+ + N+ L AG R ++
Sbjct: 49 EAASQENILRGQGTTLSPLLEKLLQPIATQGERLS-GSERDRRNLRRLLDLAGIRRNEAV 107
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
L++ + + I ++G+ + V A ++ +VG P W+
Sbjct: 108 GWLVMGKFA---AGALFAIALVWGWLPPADRAGLTGVAAGLIGFFVGSMVPEWWLKWRAA 164
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R + RA PDALDL+++C E+G+ I + L+ V++++G S +++E+ T AEL L
Sbjct: 165 SRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAAELQILS 224
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+R +A ++ RT++ + + LIQ++RYGT + +LR + E+R ++ E+KA
Sbjct: 225 DRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILSLEEKAGK 284
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L +L+VP++ LP +I ++ PA++ ++ +
Sbjct: 285 LPAQLSVPLMALILPPIIAIMASPALVRVVRLLAQ 319
>gi|167589644|ref|ZP_02382032.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 264
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 73/260 (28%), Positives = 139/260 (53%), Gaps = 1/260 (0%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+R ++ L ++L + + + +L AGFR +++ ++ ++L V ++F
Sbjct: 6 QPGDVRQDVTRRLAQLGERLPVLDPMQRVKLGLQLTRAGFRERRAVSSMIGIKLSVGVLF 65
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ I++ +L EY F +R A++ +G P + ++++R+ I PDAL
Sbjct: 66 ACVAIVFSPYIPRLGEY-FVIRALAMVAAFVIGVIVPEYVLGAMIRRRRRIIAGCLPDAL 124
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL+IC +G S+ +RRVA ++ PL++E+ + EL+ + +F R
Sbjct: 125 DLLVICTMAGNSLASGVRRVAHELARICPPLADELSVCADELTLSGDVAATLTHFATRVD 184
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ R+ L QS R+GT I +LR L R+E+++ E++AA L PK+T+PM++F L
Sbjct: 185 LPSARSLATTLTQSQRFGTPITQALRTLARTERTEQIVALEERAAKLAPKITLPMMLFIL 244
Query: 308 PVLILVIIGPAILSIIDTMK 327
P + L+ GPA + +++ +
Sbjct: 245 PTVCLIAAGPAAIRLLEVFR 264
>gi|17549304|ref|NP_522644.1| putative tight adherence TadC related transmembrane protein
[Ralstonia solanacearum GMI1000]
gi|17431556|emb|CAD18234.1| probable pilus assembly tadc transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 326
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/325 (16%), Positives = 131/325 (40%), Gaps = 15/325 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVI--PSLGSGELEKRMKSVAVEREILRKQQITS---- 62
D + L +++T A++ + + + + + K +++ R + +
Sbjct: 1 MDDSLLTLSLTAAMAGLLVFGGIAVHAVLMRHRSVRKLDTALSDVRAAGTQAVAPAGVPV 60
Query: 63 -LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
K ++ + + L +V E L G+ E + + R+
Sbjct: 61 SAPKPRPQAQQLQQQVAKVGQRWIDTGLGHRIVTEEDRKLLEECGYYGEQARTVFGGTRI 120
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++P + ++G+++ F+ + +G+ AP ++ + R+ +
Sbjct: 121 LLPPLLCVVGVLYA--------ASFREALLWGFAGFALGYLAPKWLLARRKESRRRRLDD 172
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+SIDQ+L+ +A + G L++E + + +R+
Sbjct: 173 ELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQQFASGRSREQTLLR 232
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ ++ L Q DR+G ++ + LR + R +++ L K+TV
Sbjct: 233 IARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRLKERVGKLTVKMTVV 292
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
M++ LP L+++ GP +S+ ++
Sbjct: 293 MVLTLLPALLIITAGPGFMSVTRSL 317
>gi|304320651|ref|YP_003854294.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
gi|303299553|gb|ADM09152.1| hypothetical protein PB2503_05392 [Parvularcula bermudensis
HTCC2503]
Length = 330
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 125/320 (39%), Gaps = 23/320 (7%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D L V+I L +A+ + G G KR++S++ + +++
Sbjct: 2 TLDQNSLIALGIGLVAIVGLAFAL-LGFDGGGATNKRVQSLSGNAKQAKRK----TSAKE 56
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ R S SL+ K ++ + AGF ++S+ +V ++
Sbjct: 57 QTRDRRKTISDSLKKIEDKQKEANQKKKVSLDKLIEQAGF--DFSVRDFWTASAIVAVVM 114
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +G + Q + + + G P ++ +KRQ + + +A+
Sbjct: 115 IGIGYV-----------SGQNALVILAMGIVGGLGIPRWFLYQTRRKRQKKFENEFSNAI 163
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ V+SG+ +++ L+ ++ P+ EE L + + + E YNR
Sbjct: 164 DVIVRGVKSGLPVNECLKIISR---DAQSPVKEEFQLLVEGQRIGLTLEQSLERLYNRMP 220
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG--PKLTVPMIIF 305
+ V L+ + G ++ D+L L + RS + M + A S+ + +
Sbjct: 221 ISDVNFFAIVLVIQQQTGGNLADALGNLSTVLRSRKTMLGKIAALSMEAKASAAILAAMP 280
Query: 306 FLPVLILVIIGPAILSIIDT 325
F ++ + P ++ + +
Sbjct: 281 FFVSGLVYLAAPDYIAPLFS 300
>gi|288956974|ref|YP_003447315.1| type II secretion system [Azospirillum sp. B510]
gi|288909282|dbj|BAI70771.1| type II secretion system [Azospirillum sp. B510]
Length = 334
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 83/290 (28%), Positives = 148/290 (51%), Gaps = 4/290 (1%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKD---SASSRLRTRDSKSLRNFVKKLNLKAILVD 95
+ +R+ VA + + L R +S + L +
Sbjct: 43 DSVRERLDWVARRQAGILVDAADDEDPGVSVRRPGELAARMLRSAHGILGSLAMANAAEQ 102
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
I +L AGFR ++++ L +LV + + L ++ + G+D + R GA+I
Sbjct: 103 ARIRQRLLNAGFRDPETVSLFLTAKLVFGLAAIALAMVAVLGFDLVSGGAVP-RFGAIIA 161
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
Y G P ++ L ++RQS+I R PDALDLL+IC +G S+D +L RV ++ +
Sbjct: 162 AAYAGTILPERILALLAKRRQSAIARTLPDALDLLIICANAGYSLDLSLARVGREMRLAA 221
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+SEE+++T EL L +R+ A N R ++ +R+ L+Q+ +YGT + +LR L
Sbjct: 222 RAMSEELVITADELRVLTDRREALRNLAERNDLEALRSLVATLLQAQKYGTPLTQALRTL 281
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+E R R+M E++AA L ++VP+++ LP + +++ GPA++ + T
Sbjct: 282 AAEMRHARMMAIEERAARLPALISVPLMVLILPAVFIIVAGPAVIQVART 331
>gi|217978831|ref|YP_002362978.1| type II secretion system protein [Methylocella silvestris BL2]
gi|217504207|gb|ACK51616.1| type II secretion system protein [Methylocella silvestris BL2]
Length = 320
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 84/308 (27%), Positives = 156/308 (50%), Gaps = 6/308 (1%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+ L + +L R VA + L+ I + D + L +
Sbjct: 15 LMAPLGMLALVIGGAALIGSGRRTRADLVAQRVDRLQSSAIAAPSSDEPEAHLTAARAPP 74
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
L L+ + +KL+A ++ +L + RL + F L +I++
Sbjct: 75 LLAL--SLSPAERRQVVWLFSKLQA---PADQALLYFTIARLGIAASFGALTLIFVGRLS 129
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ F + A + VG+ P+++I+ V++R + PDAL+LL++CVE+G+S
Sbjct: 130 IVAG-SFLTPLMAGLAATAVGWILPAIFIAFGVRRRTKAAAAGLPDALELLVVCVEAGLS 188
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
++ AL+RVA+++ L++E+ LT AE++ LP+R+ A N +R + V++ +
Sbjct: 189 LEDALQRVAQELKNSQPALADELTLTWAEINILPSREQALANLADRVNVPTVKSMVSMIS 248
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
QS RYGT + SLRV +E R++++ E++A L +T+P+++F +P L L++ GPA
Sbjct: 249 QSMRYGTPLAQSLRVGATEMRNDQMTLLEERANRLPALMTIPVMLFIMPTLFLIVGGPAA 308
Query: 320 LSIIDTMK 327
L +ID +
Sbjct: 309 LRLIDMFR 316
>gi|170700844|ref|ZP_02891833.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134252|gb|EDT02591.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 324
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 75/310 (24%), Positives = 146/310 (47%), Gaps = 6/310 (1%)
Query: 18 ITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + IF +V + +E+R++ + + + S
Sbjct: 11 MLAGLFIFVAGGVLVAMLLFAPRNIERRIQQASGASVGIGGGADGDDGQTSRWIAKLVEL 70
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
S+ + + + + +L AG+R+ + + + V+ ++ ++ +
Sbjct: 71 SQPISRLS---VPQEGWENSPLRIRLMNAGWRNPNAGALYFAAKTVLALVLPGAALLALA 127
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ + + +G+ P++ ++ + RQ I +PDALDLL +CVE+
Sbjct: 128 TTRLADQRMLLSFILVAL--AGIGYYVPNMILTRRIATRQRVIFEDFPDALDLLTVCVEA 185
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ +D AL RV+E++ +S +S E+ L + E+ ++ A NF RT + + +
Sbjct: 186 GLGLDAALMRVSEELRFRSEVVSGELDLLLLEMRSGFTKETALRNFALRTGTEDIESFCA 245
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I P L+ V++G
Sbjct: 246 MLIQADRFGTSIAESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMCVLLG 305
Query: 317 PAILSIIDTM 326
PA++ + +
Sbjct: 306 PAMIHVYRVL 315
>gi|116626772|ref|YP_828928.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229934|gb|ABJ88643.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 312
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 68/314 (21%), Positives = 144/314 (45%), Gaps = 8/314 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + + + + + S EL +R + +R + Q + + +
Sbjct: 1 MIIDLLLFLFTGAT---LSLILWTSFELFRRQEDPLNDRLEGLQSQAMVVAARATRRKQS 57
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ F+ L L AG R + +L + + L+ + FL G +
Sbjct: 58 AQGLDRFLYFIA-LVPGGDDWMNGTEKLLAQAGIRRKSALALYCIFVLIF-VFFLSAGTV 115
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ + +G + +GF P + LV+ ++ ++ A PD +DLL I
Sbjct: 116 YLQRNNPNGASSL---LGGLAAAFLLGFILPKQILYRLVKSYRTKLQDALPDTVDLLGIV 172
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G+ +DQA+ RV+E++ L+ E + ++ +R +F F RT ++ +++
Sbjct: 173 LGTGLGLDQAMMRVSEEMQFIYPELANEFATVVMQVRAGQDRGKSFNQFVRRTGIEDIKS 232
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ +IQS+++GTS+ +L+V R+ R + AE G K+ P+++F LPVL ++
Sbjct: 233 LSAMIIQSEKFGTSLAQALKVYADALRTRRRLRAEAAVGKAGIKMLFPIVVFILPVLFVI 292
Query: 314 IIGPAILSIIDTMK 327
+ P +LS++ +K
Sbjct: 293 TLVPGMLSVMKDLK 306
>gi|197337342|ref|YP_002157817.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
gi|197314594|gb|ACH64043.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri MJ11]
Length = 293
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 111/244 (45%), Gaps = 6/244 (2%)
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ L A ++I K +AG ++ + V+ + I + + +
Sbjct: 52 FDKVERFLPSVASNDADSIERKFYSAGLYESKYAHLYMPVKYLSAAIGSGIIYLLLGKDS 111
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ + + V+ I P +S+ + + + P LDLL +CV +G++
Sbjct: 112 SMTTQVALMCIWLVVCIS-----IPDAILSSRKKALEEKLSGQLPYLLDLLAMCVHTGMT 166
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
I+ +L +A+++ G L+ + T + + A + Y R + +R+ L
Sbjct: 167 IESSLSYLAKEMQGFDKDLAHMIARTNDRANI-VGLEPALDELYVRVPTNEMRSFVMTLK 225
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
QS YG+SI + L L ++ RS RL+ E+K L K++VP+I+F + ++++I P +
Sbjct: 226 QSLHYGSSIYEILNTLAADIRSVRLLSLEEKVGKLAAKMSVPLILFIMIPVVILIAAPGV 285
Query: 320 LSII 323
+ ++
Sbjct: 286 MRMM 289
>gi|115525753|ref|YP_782664.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
gi|115519700|gb|ABJ07684.1| type II secretion system protein [Rhodopseudomonas palustris
BisA53]
Length = 324
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 56/319 (17%), Positives = 119/319 (37%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
LA+A V++ + + + P L K R L + + + Q D
Sbjct: 1 MQMQTLAIAFMATVAVGGVAWVFLYPLLSGE------KKAEQRRASLARPEPVARQVDKG 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + +L+ + + + I +L AG +++ + V+
Sbjct: 55 QRSRREQVELTLKEVDARRQKEKKV---AISTRLTQAGL--DWAPKNFYIGSAVLGAAVF 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + G AV L GF P +S L ++R+ + +A PDA+D
Sbjct: 110 ALVYLSRGGITP-----------AVGLGFAAGFGLPRWLLSFLKKRRERNFLKALPDAVD 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ +++G+ + +++ VA PL E L + + A Y R +
Sbjct: 159 VIVRGIKAGLPLYDSIKVVA---ADAPEPLRTEFLTILDTQAIGMPLGEACGRLYERMPL 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M + +A S+ K + +I P
Sbjct: 216 PEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMSMEAKASAGIIGSLPP 275
Query: 309 V--LILVIIGPAILSIIDT 325
+ ++ + P ++++ T
Sbjct: 276 IVMFLVYLTTPDYIALLWT 294
>gi|257139199|ref|ZP_05587461.1| type II secretion system protein F [Burkholderia thailandensis
E264]
Length = 314
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 75/265 (28%), Positives = 136/265 (51%), Gaps = 1/265 (0%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 51 PADDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVV 110
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ ++ +Y F LRV + +G P + V +RQ +I
Sbjct: 111 GACAGLAALVVGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYL 169
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDLL+IC +G S+ A+RRVA ++G PL++E + EL + A
Sbjct: 170 PDALDLLVICTNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMA 229
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM+
Sbjct: 230 ARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMM 289
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+F +P + L+ GPA++ +I
Sbjct: 290 LFVMPTVALIAAGPAVIRLIAVFHK 314
>gi|296131925|ref|YP_003639172.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296030503|gb|ADG81271.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 319
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 73/311 (23%), Positives = 144/311 (46%), Gaps = 23/311 (7%)
Query: 16 VAITTAVSI---FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ I TA+++ + + + L L + + + +R+ LR + +
Sbjct: 18 IVIVTALALCSWALAVTCLYLHWLNKKNLFEYLGAKKEKRKKLRLKTRLTTG-------- 69
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
K ++ L + E + +L AG S+ ++ L +R V+ + L++
Sbjct: 70 VIELGKKFAPVGQRFKL--FVSAEKLERQLALAGNPSDLNVGGFLGLRFVLFVAGLLIAD 127
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+W++ + L + +I++ GF PS+WI+ L + RQ I PD LD + +
Sbjct: 128 VWLY-------FGMPLALFVLIVLPMCGFVLPSIWINMLAKSRQEQIALGLPDFLDGMSV 180
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++G+ +D A+ +V + G PL+EE+ EL R+ A+ NR + + +
Sbjct: 181 TLQAGVPLDAAMNQVVNHMEG---PLAEELQRFNRELELGVPREEAYHRLVNRNECEELE 237
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
Q+LIQ + G I + +V+ + R R + ++KAA PK+T+ P ++L
Sbjct: 238 TLVQSLIQGSKLGVPIARTFKVMADDMRITRFNKVKEKAAKASPKVTLVTSFIITPGVML 297
Query: 313 VIIGPAILSII 323
I+G +L+II
Sbjct: 298 AILGLIVLNII 308
>gi|42522078|ref|NP_967458.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
gi|39574609|emb|CAE78451.1| Flp pilus assembly protein TadC [Bdellovibrio bacteriovorus HD100]
Length = 258
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 113/237 (47%), Gaps = 6/237 (2%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
+ +++ + + ++ +G SE + + + ++ + I+F I +I F
Sbjct: 24 MKIRSESYRKKVRKYIKTSGLSSELNEDEFIGLQFLWGIMFPIFLLIMNFSL------QL 77
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
L V+ +G +GF P + ++R+ S++ P +DLL + VE+G+ A+++
Sbjct: 78 GLSPMVVVGMGLIGFYLPQIHARGEKKRRELSVRADLPFFIDLLALSVEAGLDFFSAIQK 137
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ + G L+EE + + ++ ++ A + R M+ + + L+ ++ G
Sbjct: 138 IVDKANGTDSVLAEEFSIVLKDIKIGSSKAQALKEMAERLDMNEITSFVAVLVDAESTGA 197
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
SI L+ + R ER + AEK A + +P+++F LP + +++ GP +S +
Sbjct: 198 SISQVLKDQSVQMRLERFVRAEKAGAQASQTMLIPLMLFILPAVFIIVFGPVAVSFM 254
>gi|329905442|ref|ZP_08274132.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
IMCC9480]
gi|327547599|gb|EGF32397.1| Flp pilus assembly protein TadC [Oxalobacteraceae bacterium
IMCC9480]
Length = 312
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/323 (17%), Positives = 120/323 (37%), Gaps = 20/323 (6%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+ I L A++ +G E + +
Sbjct: 4 TNMTPPSHSTLIFLLALAIGLSVALIGWLVGRSVAE------------VPTETRDYKDAP 51
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
R+ + + +++ L + + + ++R AG + + L RL+ +
Sbjct: 52 PLGFRMAWWPIQWISHYLALLGIASSDDKSWL--RIRRAGLDYMLTPSQFLAARLLCMCL 109
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGA----VILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
L + + + A + G+ P +W+ + + RQ I ++
Sbjct: 110 AAALCCWLLNTLAHVRVGAEPFSMAAYGQAALFGMLSGWFVPRLWLHDRIALRQREILKS 169
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P LD++ +CVE+G+++ AL + + G +E + ++ R A
Sbjct: 170 LPFFLDIVTLCVEAGLNLQGALSQAVD--KGPPGAFRDECQRVLRDVRAGKARAEALRAM 227
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + + + ++IQ++ G ++G LR + RSER AEKKA KL +P+
Sbjct: 228 AERLREPGITSFVTSVIQAESMGMNLGPVLRAQADQRRSERFQRAEKKALEAPVKLLLPL 287
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
I F P +V+ P ++ +
Sbjct: 288 IAFIFPCTFIVLFFPIVMQFLHA 310
>gi|114798049|ref|YP_761687.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
gi|114738223|gb|ABI76348.1| secretion system protein [Hyphomonas neptunium ATCC 15444]
Length = 339
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/315 (18%), Positives = 118/315 (37%), Gaps = 10/315 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ A F I + + G + R ++ A+ D R
Sbjct: 1 MIPYIVAALAFLAIAGLGLVLTGGNDDAARKRARAISAGRGGAPVKGGKVVDENIRRRAK 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + NI +KL AG E + + ++ V +I + I
Sbjct: 61 TQEMLEGLRRQDKERRRNDPMRNIGSKLTQAGL--EIPVPMFWLLSAVCGLICAGIVYIS 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + R + + G P ++ L++ R + + + DALD+++
Sbjct: 119 GADGLVINGISLKSRPVLIAAAFFGGTLGIPQFILNFLIKGRHTKMINQFADALDIIVRG 178
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V SG+ +++ +R +A+ PL +E L L+ + + Y R + +
Sbjct: 179 VRSGLPLNECIRVIAK---ESPEPLRKEFLTFADNLAMGAGLERSLAALYKRLPLQEINF 235
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---L 310
LI + G ++ ++L L + RS ++M + KA S K + MII LP+ +
Sbjct: 236 FAIVLIIQSKAGGNLSEALHNLSTVIRSRKMMREKVKALSSEAKASA-MIIGSLPIAVGV 294
Query: 311 ILVIIGPAILSIIDT 325
++ + P + + T
Sbjct: 295 MVFLTTPDYIMTLFT 309
>gi|159901127|ref|YP_001547374.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159894166|gb|ABX07246.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 301
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 72/308 (23%), Positives = 137/308 (44%), Gaps = 11/308 (3%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + + +++ V L ++R R ++ +L+ R
Sbjct: 1 MPLLIGLVVLVIVFGVGFMVLN----QRRQTDTVSSRLAQFTERSMNLEDLELQLPFMQR 56
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ N V ++ ++ + N L AG + + +R+ + + + I
Sbjct: 57 VVTPMLNNVFVKLGQSGKGNDKLRNNLMLAGNPGNLTPTMFTGMRIFMALALFGV----I 112
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F L + + + G +GF P++W+ ++KRQ I +A PDALDLL I V
Sbjct: 113 FLICMLAKVQTLSAIQWSGVGGALGFLLPAMWLGRQIKKRQKLILKALPDALDLLSISVT 172
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ D AL+RVAE L E ++++ R AF + RT ++ + +
Sbjct: 173 AGLGFDAALQRVAEK---WDNELCREFRRALSDIRLGTQRHEAFRSMTVRTGVEDLTSFV 229
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A+IQ+D+ G S+G L++ + R R AE++A K+ P++ P + +VI+
Sbjct: 230 SAVIQADQLGVSMGKMLKIQSDQLRLRRRQRAEEEAQKAPIKMLFPLVFLIFPSMFVVIL 289
Query: 316 GPAILSII 323
GPAI ++
Sbjct: 290 GPAIPRLL 297
>gi|27365656|ref|NP_761184.1| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
gi|27361804|gb|AAO10711.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus CMCP6]
Length = 293
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 68/313 (21%), Positives = 143/313 (45%), Gaps = 20/313 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V + + +L+ VV L +++ + + + R+ +S + +
Sbjct: 1 MVIAQIVMLVSALMLLVVTSLLWHNTSQRKRREARLSHYVKRQAAASSSNHSLMHNWITQ 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L L AGF +L+ LL+ + I L+ ++
Sbjct: 61 NEKARLS------------------RLLANAGFHKPQALSWLLLAKFGSGI--LVALLLL 100
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ L + V++ +G P W++ + + +K++ PDA+DLL++CV
Sbjct: 101 MRQSINGEAIVSMLSLTLVLVGYVLGANGPEWWLNLNADRYRKKLKQSAPDAIDLLVLCV 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
ESG+S+++A RVA + Q P++E+ +T AEL L +R A N RT + +
Sbjct: 161 ESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLNDRTQALNNLSWRTGIPELHTL 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L +D+YG+ + D+LR + + R +R ++ E++A L K+T+ + + +++++
Sbjct: 221 ATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGKLPGKITLIQMTMIMLPMLVMV 280
Query: 315 IGPAILSIIDTMK 327
I P + ++ ++
Sbjct: 281 ISPILSQLLTSLA 293
>gi|260461945|ref|ZP_05810190.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259032192|gb|EEW33458.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 337
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 118/320 (36%), Gaps = 21/320 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T LA + S ++ YA + + + + E R + + +
Sbjct: 4 IDGTVLAFVVLAGFSAGAVAYAFLFNQISNERQTGKRLETIKAAETDRSVVKATRDRATD 63
Query: 69 SSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+++ R SL+ +K K + + +LR AG + + + + I
Sbjct: 64 AAKRRKSVQDSLKELDEKQKSKDSAIKKPPLKAQLRQAGM--KVPIERFYIYSAICGIAL 121
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + L V+L G +G P ++S +R + +P+AL
Sbjct: 122 TVIAFVAGAPLIVLPG---------VLLAGALG--LPRWFVSFRRSRRVKAFLNEFPNAL 170
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ V+SG+ ++ A+R +A P+ E + + A
Sbjct: 171 DIIVRAVKSGLPLNDAVRLIAN---EAPEPVKTEFRRIVDSQQMGLSIPDATLRMPETMP 227
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G ++ ++L L R + M+A+ +A S+ K + II L
Sbjct: 228 CTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEAKASAA-IIGAL 286
Query: 308 PVLILVII---GPAILSIID 324
P ++ ++ P+ L +
Sbjct: 287 PFIVAFLVYLSSPSYLMPLF 306
>gi|50119739|ref|YP_048906.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
gi|49610265|emb|CAG73708.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
Length = 319
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 76/291 (26%), Positives = 145/291 (49%), Gaps = 5/291 (1%)
Query: 39 GELEKRMK-SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
+LE RM+ + Q + +A S L + + L ++L+ + N
Sbjct: 33 KQLEIRMRGHLPSASIEAASQDNILRGQGTALSPLLEKLLQPLATQGERLS-GSDRDRRN 91
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L AG R ++ L++ + L I ++G+ + V A ++
Sbjct: 92 LRRLLDLAGLRRNEAVGWLVMGKFA---AGAFLAIALVWGWLPPADRAGLTGVAAGLIGF 148
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+VG P W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S
Sbjct: 149 FVGSMVPEWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPE 208
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+++E+ T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR +
Sbjct: 209 MADELHYTAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIAD 268
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E+R ++ E+KA L +L+VP++ LP +I ++ PA++ +I +
Sbjct: 269 ESRKTLILGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVIRLLAQ 319
>gi|254293218|ref|YP_003059241.1| type II secretion system protein [Hirschia baltica ATCC 49814]
gi|254041749|gb|ACT58544.1| type II secretion system protein [Hirschia baltica ATCC 49814]
Length = 331
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 53/316 (16%), Positives = 110/316 (34%), Gaps = 20/316 (6%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ + A F + V G G + + K + D+ R
Sbjct: 3 QTMIVYLIAGLAFVSVVGVGFAFTGGGTTKAQQKRFKQVAVGAGSGGKKNSSVDATLMRR 62
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ ++ + I +KL AG+ + P +F +L
Sbjct: 63 KQMQDSMKTLRERENKRRKDTRGRTIKDKLAQAGW-------------TIEPAMFWVLSA 109
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + Q + P + + RQ + + D +D+++
Sbjct: 110 VTGVVVAGITFVLGQTPLIIAGAGFAGALGLPRWVVGMGISARQKKFTQQFSDGIDVIVR 169
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V+SG+ + + LR +A PL E I + + + N YNR + V
Sbjct: 170 GVKSGLPLIECLRIIAS---ESPAPLGTEFKRVIDAIQMGTTVEKSLSNMYNRMPLPEVN 226
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L RS +++ + KA S K + MII LP+ ++
Sbjct: 227 FFGIVIGIQQQSGGNLSEALGNLSEVLRSRKMLAEKVKALSSEAKASA-MIIGALPIAVM 285
Query: 313 VII---GPAILSIIDT 325
+++ P ++++ T
Sbjct: 286 ILVYFSSPDYITLLFT 301
>gi|167842403|ref|ZP_02469087.1| bacterial type II secretion system protein F domain [Burkholderia
thailandensis MSMB43]
Length = 244
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 1/244 (0%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
+++ + + +L +AGFR +++++++ ++LVV L + + +
Sbjct: 2 ERVPVVDATQRMKLAARLASAGFRECHAVSVMVGLKLVVG-ACAGLAALVVGAHVPRAGD 60
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
LRV + +G P + V +RQ +I PDALDLL+IC +G S+ A+
Sbjct: 61 YVVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVICTNAGNSLSVAI 120
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
RRVA ++ PL++E + EL A R + +R L+QS +Y
Sbjct: 121 RRVASELKTICPPLADEFSVCANELQIGGEPAFALNAMAARIGLPSMRALVTTLVQSQQY 180
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
GT I SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 181 GTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLIA 240
Query: 325 TMKD 328
Sbjct: 241 VFHK 244
>gi|37680188|ref|NP_934797.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37198935|dbj|BAC94768.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 293
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/313 (21%), Positives = 142/313 (45%), Gaps = 20/313 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V + + +L+ VV L +++ + + + R+ +S + +
Sbjct: 1 MVIAQIVMLVSALMLLVVTSLLWHSTSQRKHREARLSHYVKRQAVASSSNHSLMHNWITQ 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L L AGF +L+ LL+ + I L+ ++
Sbjct: 61 NEKARLS------------------RLLANAGFHKPQALSWLLLAKFGSGI--LVALLLL 100
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + V++ +G P W++ + + +K++ PDA+DLL++CV
Sbjct: 101 MRQSINGEAIVSMWSLTLVLVGYVLGANGPEWWLNLNADRYRKKLKQSAPDAIDLLVLCV 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
ESG+S+++A RVA + Q P++E+ +T AEL L +R A N RT + +
Sbjct: 161 ESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLNDRTQALNNLSWRTGIPELHTL 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L +D+YG+ + D+LR + + R +R ++ E++A L K+T+ + + +++++
Sbjct: 221 ATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGKLPGKITLIQMTMIMLPMLVMV 280
Query: 315 IGPAILSIIDTMK 327
I P + ++ ++
Sbjct: 281 ISPILSQLLTSLA 293
>gi|170704228|ref|ZP_02894801.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170130863|gb|EDS99617.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 255
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 77/255 (30%), Positives = 137/255 (53%), Gaps = 1/255 (0%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R ++ L ++L + + + +L AGFR +++ ++ ++L ++F I
Sbjct: 2 RQDLTRRLAQLGERLPVLDPMQRVKLGLQLTRAGFRERRAVSAMIGIKLSCGVLFAGFAI 61
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ +L E+ F +R A++ +G P + ++++R+ I +PDALDLL+I
Sbjct: 62 VFSPYIPRLGEF-FVIRAVAMVGAFVIGVIVPEYVLGAMIRRRRRIIAACFPDALDLLVI 120
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
C +G S+ +RRVA ++ PL++E+ + EL+ N A +F R R
Sbjct: 121 CTMAGNSLASGVRRVARELQRICPPLADELTVCADELTLSGNVSEALAHFALRVNFSSAR 180
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L QS R+GT I +LR L R+E+++ E+KAA L PK+TVPM++F LP + L
Sbjct: 181 SLATTLTQSQRFGTPITQALRTLSRSERTEQVVALEEKAAKLAPKITVPMMLFILPTVGL 240
Query: 313 VIIGPAILSIIDTMK 327
+ GPA + +I+ K
Sbjct: 241 IAAGPAAIRLIEVFK 255
>gi|13474664|ref|NP_106233.1| hypothetical protein mlr5603 [Mesorhizobium loti MAFF303099]
gi|14025419|dbj|BAB52019.1| mlr5603 [Mesorhizobium loti MAFF303099]
Length = 337
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 119/320 (37%), Gaps = 21/320 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T LA + S ++ YA + + + + + E R + + +
Sbjct: 4 IDGTVLAFVVLAGFSAGAVAYAFLFTQISNEKQAGKRLETIKTAETDRSIVKATRDRATD 63
Query: 69 SSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+++ R SL+ +K K + + +LR AG + S+ + + +
Sbjct: 64 AAKRRKSVQDSLKELDEKQKTKDSAIKKPPLKAQLRQAGM--KVSIERFYIYSAICGLAL 121
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + L V+L G +G P ++S +R + +P+AL
Sbjct: 122 TVVAFVVGAPMLVLPG---------VLLAGALG--LPRWFVSFRRARRVKAFLNEFPNAL 170
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ V+SG+ ++ A+R +A P+ E + + A
Sbjct: 171 DIIVRAVKSGLPLNDAVRLIAN---ESPEPVKAEFRRIVDSQQMGISIPDATLRMPETMP 227
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G ++ ++L L R + M+A+ +A S+ K + II L
Sbjct: 228 CTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVQALSMEAKASAA-IIGAL 286
Query: 308 PVLILVII---GPAILSIID 324
P ++ ++ P L +
Sbjct: 287 PFIVAFLVYLSSPDYLMPLF 306
>gi|227114881|ref|ZP_03828537.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 319
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/291 (24%), Positives = 144/291 (49%), Gaps = 5/291 (1%)
Query: 39 GELEKRMK-SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
+LE RM+ + Q+ + + S L + + L ++L+ + N
Sbjct: 33 KQLEVRMRGHLPSASIEAASQENILRGQGTTLSPLLEKLLQPLATQGERLS-GSDRDRRN 91
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L AG R ++ L++ + + I ++G+ + V A ++
Sbjct: 92 LRRLLDLAGLRRNEAVGWLVMGKFAAGALLAIAL---VWGWLPPADRAGLTGVAAGLIGF 148
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+VG P W+ R + A PDALDL+++C E+G+ I + L+ V++++G S
Sbjct: 149 FVGSMVPEWWLKWRAASRGEKLACAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPE 208
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+++E+ T AEL L +R +A ++ RT++ + + LIQ++RYGT + +LR +
Sbjct: 209 MADELHYTAAELQILSDRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIAD 268
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E+R ++ E+KA L +L+VP++ LP +I ++ PA++ ++ +
Sbjct: 269 ESRKTLILSLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVVRLLAQ 319
>gi|227326306|ref|ZP_03830330.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 319
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/275 (25%), Positives = 138/275 (50%), Gaps = 4/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
Q+ + + S L + + + ++L+ + N+ L AG R ++
Sbjct: 49 EAASQENILRGQGATLSPLLEKLLQPIATQGERLS-GSDRDRRNLRRLLDLAGIRRSEAV 107
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
L++ + + I ++G+ + V A ++ +VG P W+
Sbjct: 108 GWLVMGKFA---AGALFAIALVWGWLPPADRAGLTGVAAGLIGFFVGSMVPEWWLKWRAA 164
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R + RA PDALDL+++C E+G+ I + L+ V++++G S +++E+ T AEL L
Sbjct: 165 SRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPEMADELHYTAAELQILS 224
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+R +A ++ RT++ + + LIQ++RYGT + +LR + E+R ++ E+KA
Sbjct: 225 DRTLAMKHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIADESRKTLILGLEEKAGK 284
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
L +L+VP++ LP +I ++ PA++ +I +
Sbjct: 285 LPAQLSVPLMALILPPIIAIMASPALVRVIRLLAQ 319
>gi|114705451|ref|ZP_01438359.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
gi|114540236|gb|EAU43356.1| probable pilus assembly protein [Fulvimarina pelagi HTCC2506]
Length = 335
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/313 (15%), Positives = 119/313 (38%), Gaps = 19/313 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + +S L YA + P L + + K+ E R + I + ++ ++ R
Sbjct: 7 MLFVLLSTISAGCLAYAFMQPKLAASKRVAARKTTYSRDEASRTRVIEAKERMQEQAKRR 66
Query: 74 TRDSKSLRNFVKKLNLKAI-LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+L++ + + + ++ AG + + ++ + +L +
Sbjct: 67 RALQNNLKDLEDRAKERGGHSAKPTLQQRIDQAGL--KITAKKFRLISAGLAAAAFLLTL 124
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ L + G P ++SN +KR + ++P A+DL++
Sbjct: 125 VFGLPILATLG-----------IAVVAGLGLPRAFLSNRRKKRINDFSNSFPTAIDLIVR 173
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V++G+ ++ LR V D+ P+S E + A + Y + +
Sbjct: 174 GVKAGLPLNDTLRTVVSDVPD---PVSSEFQKVVEAQQMGVTLGDACDRLYKQVPLPETN 230
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF--LPVL 310
+ + G ++ ++L L R + M + +A S+ K + +I L
Sbjct: 231 FFAIVIAIQSQAGGNLSEALGNLSRVLRERKKMRQKIQAVSMEAKASASIIGSIPVLVAS 290
Query: 311 ILVIIGPAILSII 323
++ + P L+++
Sbjct: 291 MIYMTSPDYLNVL 303
>gi|86159245|ref|YP_466030.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775756|gb|ABC82593.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 306
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/273 (25%), Positives = 137/273 (50%), Gaps = 4/273 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+ + +A+ L + L+ + + + + + +L AG R +
Sbjct: 30 RREADPVVRRLRATAAGALDGDPALQLQPGLASVEEEPGVGGSRLRRELVWAGIRRAGAA 89
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + + + + + L P + + A LI + F P++W+ VQ
Sbjct: 90 QGFVAAK----VALAVGALAAFAALNALRTEPVRTGLPAAALITGLAFFLPNLWLRARVQ 145
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
RQ+ + R+ PDALDLL+ CVE+G+ +D AL+RV++++ LS+E+ L E+
Sbjct: 146 ARQTQLDRSLPDALDLLVTCVEAGLGLDSALQRVSDEVALAHPLLSKELRLVFLEVKAGI 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R AF RT +R+ + L Q++ +GTS+G +LR+ R R+ AE+KAA
Sbjct: 206 ARISAFRRMAERTGAPELRSLSATLAQTELFGTSVGAALRIQAEGIRIRRMHRAEEKAAY 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K+++P+++ LP + V++GPA++++ + +
Sbjct: 266 VSVKMSLPLVLCILPCVFAVVLGPAVVNMAERL 298
>gi|301168390|emb|CBW27980.1| putative membrane protein [Bacteriovorax marinus SJ]
Length = 404
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 8/221 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L +AG + ++ + + F I+ ++ + + + +IG VGF
Sbjct: 187 LASAGLTDVLTPEDFFSFKIFLIVGFPIVFFGIRVFLEE------EWPLTLIPIIGAVGF 240
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +WI ++ RQ + A P +D+L + VE+G+ A+ +V E LSEE
Sbjct: 241 VYPDIWIKGRIEMRQKEVIMAMPFCVDMLALSVEAGLDFVAAMTKVVEKAKKT--ALSEE 298
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
I E+ +R A N R + + + LI +D G SIG L+ L E R
Sbjct: 299 FETMIKEIRIGASRAEALRNLAWRIDLIQISSFCATLIAADSVGASIGPILKALSMEIRQ 358
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ E EK A+ K+ PM+ +P + +V+ P +L +
Sbjct: 359 KKSSEVEKAGATAATKILFPMLFLIVPAVFIVVAAPIVLEL 399
>gi|163801672|ref|ZP_02195570.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
gi|159174589|gb|EDP59391.1| hypothetical Flp pilus assembly protein TadC [Vibrio sp. AND4]
Length = 280
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 109/263 (41%), Gaps = 9/263 (3%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
T ++ + + ++ + + + + KL AG+ +
Sbjct: 23 RTEQRRKKIALYVDGNVHRAPSSVNRFFVRFGKEHRKELEQKLVQAGYYNTEWAKFYFPA 82
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ +L + +FG L + ++ A+++ V P + +
Sbjct: 83 K--------LLVLALVFGGVFLSDMKQSNQLIAIMVGLIVVILGPDSLLQMRRKMLIRKT 134
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P LD++ +CV++G++I+ AL + +++ L ++ T + A
Sbjct: 135 SAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSDSAKI-QGLEKAL 193
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ R VR+ +IQ+ ++GTS+ L L + R +++ E+K L K++
Sbjct: 194 TDLSERIPTPPVRSFVLTIIQNLQHGTSVAQILSDLAEDMRKMQILTVEEKVGKLSAKMS 253
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
+P+IIF + ++++I+ P I+ +
Sbjct: 254 LPLIIFIMFPIVILILAPGIMQM 276
>gi|221197785|ref|ZP_03570831.1| type II secretion system protein [Burkholderia multivorans CGD2M]
gi|221204657|ref|ZP_03577674.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221213135|ref|ZP_03586111.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221167348|gb|EED99818.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221175514|gb|EEE07944.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221181717|gb|EEE14118.1| type II secretion system protein [Burkholderia multivorans CGD2M]
Length = 330
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/294 (20%), Positives = 124/294 (42%), Gaps = 8/294 (2%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVD 95
L++RM ++ R ++ + + D+ S+ R + L + L +V
Sbjct: 41 DALDRRMAALEAARTRPAGEEDAAAKPDARRSQRVERLLERLSAAGMRWLDTGLGKHVVA 100
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E L G+ + + L RL + + +L I G + + +
Sbjct: 101 EEDRRLLEQCGYVDARTRGLFLSARLAMGVGLPLLFAIVASGRVSGGYW-----MIGMCA 155
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
VGF P ++I R+ S+ P +D+L + G+S+DQ+L+ V D G
Sbjct: 156 AFGVGFMLPKLYIRRRAAARRQSVGNELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGML 215
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS E+ + + + R+ + + + + +R + +IQ D++G ++ + L+
Sbjct: 216 PVLSSEVGIAQRQFAAGRTREQSLQRLSSGFDNEDLRAVVRLMIQVDKHGGAVQEPLKQF 275
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R R ++ L K+T M++ LP L++V GP +L+++ + H
Sbjct: 276 GDRLRETRRALLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGMLAVMRALSPH 329
>gi|300021858|ref|YP_003754469.1| type II secretion system protein F [Hyphomicrobium denitrificans
ATCC 51888]
gi|299523679|gb|ADJ22148.1| Type II secretion system F domain protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 332
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/318 (16%), Positives = 122/318 (38%), Gaps = 29/318 (9%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELE-KRMKSVAVEREILRKQQITSLQKDSASS 70
+ V + A++ IYA+ P + KR++SV + S
Sbjct: 10 LRVIVPLLAALAFAGGIYALAYPYFSGDREKDKRLESVVGRSRKVGGALSE------IQS 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + +L+ + N K + + +L AG +++ + + I+ L
Sbjct: 64 SRKKSVADTLKEMEDRQNAKKKI---TMGLRLERAGV--KWTPRDFYIGSAIAGIVLGGL 118
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ V+ + F P ++ L ++RQ+ +A+D++
Sbjct: 119 CF----------NFLNLPIAATVVALFVGAFGIPRWVVAKLTKRRQAKFTSHLANAIDVV 168
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V+SG+ +++ L+ +A PL+ E + + A + Y+R +
Sbjct: 169 VRGVKSGLPLNECLQVIAR---ESPEPLAGEFRSVMEQQRLGVPLADALDRMYDRMPLAE 225
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR T + + G ++ ++L L R +++ + KA S K + M++ LP
Sbjct: 226 VRFLTIVIAIQQQAGGNLSEALSNLSGVLRDRQMLALKVKALSAEAKASA-MVLASLPPG 284
Query: 311 ILVII---GPAILSIIDT 325
++ ++ P + + T
Sbjct: 285 VMFMVYMSSPGYMMPLFT 302
>gi|254245561|ref|ZP_04938882.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
gi|124870337|gb|EAY62053.1| Flp pilus assembly protein TadC [Burkholderia cenocepacia PC184]
Length = 330
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/334 (17%), Positives = 128/334 (38%), Gaps = 18/334 (5%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS----------GELEKRMKSVAVEREILRKQ 58
AT++ ++ L+ +V + L++RM ++ + +
Sbjct: 1 MTATQIGAIALAVGALGVLLLGMVAMLRANAAARAERALVDALDRRMAALEAAKARPAQD 60
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNI 115
S + + + R L + V E L G+ + +
Sbjct: 61 GNVSAKANVRGGQRVERWLDRLSAAGMRWLDTGFGKYAVAEEDRRLLEQCGYIDARTRGL 120
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L R+ I +L I G K + + + +GF P +++ R
Sbjct: 121 FLSARVACGIALPLLFAICASGRMKGSIW-----MVGMCAALGLGFMLPKLYVQRRAASR 175
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ S+ P +D+L + G+S+DQ+L+ V D G LS E+ + + + R
Sbjct: 176 RQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMLPVLSSEVGIAQRQFAAGRTR 235
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + + + + +R + +IQ D++G ++ + L+ R R ++ L
Sbjct: 236 EQSLQRLSSGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLT 295
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
K+T M++ LP L++V GP +L+++ +
Sbjct: 296 VKMTGVMVLTLLPALLIVTAGPGMLAVMRALSSQ 329
>gi|209809175|ref|YP_002264713.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
gi|208010737|emb|CAQ81128.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
Length = 292
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/317 (17%), Positives = 129/317 (40%), Gaps = 28/317 (8%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ ++ + A+ + + L + + L L K + S
Sbjct: 1 MITSSVVLYAVLVSFGLVLLFWLLYQIVLQRKALLKFLAS-------------------- 40
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ + TR+ + + L +++ K +AGF ++ + + I
Sbjct: 41 --NEILTRNENVINKVEQFLPSSVSTNADDVERKFYSAGFYQFKWAHLYMPAKYAAAAIG 98
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + + + + + + + P + +++ ++ + + P L
Sbjct: 99 GV-----TIYWLSRSDTDPKEIIAYMCIWLVICILIPDLILNSRIKTLRDKLSSQLPYLL 153
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CV +G++I+ ++ +A+++ G L+ + T VA + Y +
Sbjct: 154 DLLAMCVHTGMTIESSMAYLAKEMRGFDKDLAHMVSRTNDRARI-VGLSVALDELYIKVP 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R+ L QS YG+SI L L + R+ RL+ E+K L K++VP+I+F +
Sbjct: 213 TNEMRSFVMTLKQSLHYGSSIYGILNTLAEDIRNVRLLSLEEKVGKLAAKMSVPLILFIM 272
Query: 308 PVLILVIIGPAILSIID 324
++++I P I+ ++
Sbjct: 273 IPVVILIAAPGIMRMMS 289
>gi|325964126|ref|YP_004242032.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470213|gb|ADX73898.1| Flp pilus assembly protein TadC [Arthrobacter phenanthrenivorans
Sphe3]
Length = 294
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/312 (22%), Positives = 138/312 (44%), Gaps = 20/312 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ VS+ + V + ++K+ + E ++
Sbjct: 3 LIILVSVILVCVPVAGLTWSVLTVDKQGQVAVGELLARGTASVSVASATKR--------- 53
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
L ++L ++ + L AG L +L +L + + L++G+
Sbjct: 54 TMLETIGRRLTPPGYVLF--LDRLLSLAGRPLSMPLGKVLGTKLALGLTGLVVGLYMTAV 111
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L A + + ++G+ P + + + ++RQ I+ + LD +LI VE+G
Sbjct: 112 ------GTTPLMKLAGLFVLFMGYFIPDLLLYSKGKERQKVIQLELANTLDQMLISVEAG 165
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + A+ R E+ G PL+EE++ T+ ++ +R+ A+ RT + +R+ QA
Sbjct: 166 LGFEGAMARAGENGKG---PLAEELVRTLQDMQVGRSRREAYLALAERTSIPELRSFVQA 222
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+D YG +I LRV R +R AE+KA L + P++ F PVL + I+GP
Sbjct: 223 IIQADTYGIAISRVLRVQAKVMRMKRRQRAEEKAMKLPVMILFPLLFFIFPVLFIAILGP 282
Query: 318 AILSIIDTMKDH 329
A+++ + T+
Sbjct: 283 AVINTVVTLSGQ 294
>gi|172065281|ref|YP_001815993.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997523|gb|ACB68440.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 324
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 75/311 (24%), Positives = 144/311 (46%), Gaps = 6/311 (1%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + + A + +E+R++ + + + S
Sbjct: 11 MLAGLFIFVAGGVLA-AMLLFAPRNIERRIQQASGASVGIGGGADGGDGQTSRWIAKFVE 69
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
S+ + + + + +L AG+R+ + + + V+ + ++ +
Sbjct: 70 LSQPISRLS---VPQEGWENSPLRIRLMNAGWRNPNAGALYFAAKTVLALALPGAALLAL 126
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + +G+ P+V +S + RQ I +PDALDLL +CVE
Sbjct: 127 ATTRLADQRMLLSFILVAL--AGIGYYVPNVILSRRIATRQRVIFEDFPDALDLLTVCVE 184
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ +D AL RV+E++ +S +S E+ L + E+ ++ A NF RT + + +
Sbjct: 185 AGLGLDAALMRVSEELRFRSEVVSGELDLLLLEMRSGFTKETALRNFALRTGTEDIESFC 244
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I P L+ V++
Sbjct: 245 AMLIQADRFGTSIAESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFNIFPALMCVLL 304
Query: 316 GPAILSIIDTM 326
GPA++ + +
Sbjct: 305 GPAMIHVYRVL 315
>gi|162147495|ref|YP_001601956.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786072|emb|CAP55654.1| putative type II secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 313
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 77/312 (24%), Positives = 142/312 (45%), Gaps = 8/312 (2%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK----QQITSLQKDSASSRLRTR 75
T + I +L+ + L RM+ LR+ + + R+ R
Sbjct: 5 TMIMIAALLMTIGGIFSACYLLFSRMEQEGRRTLRLRQLHELSVGEANAVRTIDGRIWFR 64
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + F + L + + L + F L + + + V ++ +++G +
Sbjct: 65 FLERIGVFFARSGLLSAKTLGELQQTLSSVSFLGTRFLPVFIGAKAVTLVVGIVVGWL-- 122
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ L + + VG AP + + ++ + PDALD+L+IC E
Sbjct: 123 --IHEETRSDGMLYLVLSLGAPVVGLLAPDFVVKRMQAHYLRNVDQGIPDALDMLVICAE 180
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ I+ A+ RV ++ + ++ E LT E+ +R+ F +F RT + +R
Sbjct: 181 AGLPIEAAIGRVGREMTAVNRSVANEFRLTAQEMGVASDRRDVFLHFGERTNLSSMRRIG 240
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL Q+ + G+S+ +LRVL E R + L E E +AA L LT+PMI+F LPV+ LV+
Sbjct: 241 SALNQTLQAGSSVTQALRVLSVEMRKDALTEYEARAARLPVLLTLPMILFILPVVFLVVG 300
Query: 316 GPAILSIIDTMK 327
GPA ++++ +
Sbjct: 301 GPAAVTVMHALG 312
>gi|320156058|ref|YP_004188437.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
gi|319931370|gb|ADV86234.1| flp pilus assembly protein TadC [Vibrio vulnificus MO6-24/O]
Length = 293
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/314 (21%), Positives = 139/314 (44%), Gaps = 21/314 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +A + ++ V + KR ++ S ++
Sbjct: 1 MVIAQIVMLLSALMLLVVTSLLWHNTSQRKRREA-------------------RLSHYVK 41
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ S N N + L AGF +L+ LL+ + I L+ ++
Sbjct: 42 RQAVASSSNHSLMHNWITQNEKARLSRLLANAGFHKPQALSWLLLAKFGSGI--LVALLL 99
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + V++ +G P W++ + + +K++ PDA+DLL++C
Sbjct: 100 LMRQSINGEAIVSMWSLTLVLVGYVLGANGPEWWLNLNADRYRKKLKQSAPDAIDLLVLC 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG+S+++A RVA + Q P++E+ +T AEL L +R A N RT + +
Sbjct: 160 VESGLSLNRAFERVARYLQEQHAPMAEQFRVTSAELDLLNDRTQALNNLSWRTGIPELHT 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L +D+YG+ + D+LR + + R +R ++ E++A L K+T+ + + ++++
Sbjct: 220 LATTLTMADKYGSPLADTLRQISEDARRQRALDIEERAGKLPGKITLIQMTMIMLPMLVM 279
Query: 314 IIGPAILSIIDTMK 327
+I P + ++ ++
Sbjct: 280 VISPILSQLLASLA 293
>gi|87308908|ref|ZP_01091046.1| bacterial type II secretion system protein [Blastopirellula marina
DSM 3645]
gi|87288251|gb|EAQ80147.1| bacterial type II secretion system protein [Blastopirellula marina
DSM 3645]
Length = 321
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/307 (19%), Positives = 122/307 (39%), Gaps = 14/307 (4%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
A+ I + V + +G L L + + L
Sbjct: 5 ALLIVGAFFGVTMLIYLAGRL-------------LLSSDRNKPSEMLHPGAKGSIGLGGL 51
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ K+ E + + AG+ + + L VR + ++ +
Sbjct: 52 TRAFAGILPKSKQSYETLQKDMVKAGYYHRDAADEFLAVRNAALVAWVFFVGATLIALAD 111
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
E QL + + + + F P V IS+ R S I+ A PDALD++ + +G+ +
Sbjct: 112 ANETTTQLILIVSVAVLILIFAIPRVIISSQAAARVSRIQHALPDALDMITMTTTAGLPL 171
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
++++RV++++ L+ E+++ + + A +NF R ++ V + Q
Sbjct: 172 QKSIKRVSDEMVRSHEDLACELMILDRQAETG-SLGQAIQNFAKRLEVPEVNALASLVTQ 230
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ R G S+ + R R R AE++ KL +P+I P + ++++GP++L
Sbjct: 231 AQRIGGSVAGAFRDFADSIRRSRRQLAEERGNQNSIKLLIPVIFLLAPPVYILLLGPSVL 290
Query: 321 SIIDTMK 327
+ D M
Sbjct: 291 RLQDFMG 297
>gi|110632960|ref|YP_673168.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110283944|gb|ABG62003.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 338
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/315 (15%), Positives = 113/315 (35%), Gaps = 23/315 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L V +S+ + A+ P +R L +++ ++ D R +
Sbjct: 14 LMVFAFATLSVGGVAAALFYPQFAKASPFRRRFQ---GLAALGEEEESTAPADEDRDRRK 70
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + K+ + +LR AG ++ V + + ++
Sbjct: 71 SVEKTLRELEEKQKAKTRKAGKPTLSGRLRQAGL--SWNRRAYFTACAVCGALTFPVALL 128
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G + +V G P ++++ ++R + +A+D+++
Sbjct: 129 LGAG-----------SLVSVGFALAGGLLLPHFYVASRRKRRFKQFTNEFSNAVDVIVRG 177
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + LR +A P+ E + + + + + A + + R +
Sbjct: 178 LKSGLPVGDCLRIIA---AEAQEPVKSEFVAIVQDQTLGISLDEAVQRLWERVPLAEANF 234
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI-- 311
+ R G S+ ++L L R + M A+ +A S K + II LP +
Sbjct: 235 FAIVVGLQSRTGGSLAEALGNLSKVLRERKKMSAKIRAMSSEAKSSAG-IIGALPFFVSA 293
Query: 312 -LVIIGPAILSIIDT 325
+ + P +S++ +
Sbjct: 294 AIYLTSPDYMSLLFS 308
>gi|172060499|ref|YP_001808151.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171993016|gb|ACB63935.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 330
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 123/314 (39%), Gaps = 8/314 (2%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
V++ A + L++RM ++ R + S + D+ + R
Sbjct: 21 FGMVALLRASAASRAERALADALDRRMAALEAARVPKTAEDGASAKPDTRGRQRIERMLD 80
Query: 79 SLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L + +V E L G+ + + L R+ I +L I+
Sbjct: 81 RLSAAGMRWLDTGFGKHIVAEEDRRILEQCGYVDTRTRGLFLSARIACGIALPLLFAIFA 140
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
G+ K + + +GF P + + R+ S+ P +D+L +
Sbjct: 141 SGHLKGRHW-----MIGTFAAFALGFMLPKLVLRRRAAARRQSVVDELPLFVDMLRLLQG 195
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G+S+DQ+L+ V D G LS E+ + + + R + + + + +R
Sbjct: 196 VGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFAAGRTRDQSMQRLSSGFDNEDLRAIA 255
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ ++Q D++G ++ + L+ R R ++ L K+T M++ LP L++V
Sbjct: 256 RLVVQVDKHGGAVQEPLKQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTA 315
Query: 316 GPAILSIIDTMKDH 329
GP L+++ + H
Sbjct: 316 GPGFLAVMHALSAH 329
>gi|59713408|ref|YP_206183.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
gi|59481656|gb|AAW87295.1| bipartite nuclear localization signal containing protein [Vibrio
fischeri ES114]
Length = 303
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/318 (18%), Positives = 130/318 (40%), Gaps = 30/318 (9%)
Query: 8 LFDATELAV--AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
+ ++ + ++ + I ++ +V L L K +
Sbjct: 10 IMNSQTILFIELVSVFIGISLFLWLLVQILLQRKLLGKYLAK------------------ 51
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ +D + L A ++I K +AG ++ + V+ +
Sbjct: 52 ----HKEFNKDDNVFDKVERFLPSVASNDADSIERKFYSAGLYESKYAHLYMPVKYLTAA 107
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I + + + + + + V+ I P +S+ + + + P
Sbjct: 108 IGSGIIYLLLGKDSSMTTQVALMCIWLVVCIS-----IPDAILSSRKKALEEKLSGQLPY 162
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LDLL +CV +G++I+ +L +A+++ G L+ + T + + A + Y R
Sbjct: 163 LLDLLAMCVHTGMTIESSLSYLAKEMQGFDKDLAHMIARTNDRANI-VGLEPALDELYVR 221
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R+ L QS YG+SI + L L ++ RS RL+ E+K L K++VP+I+F
Sbjct: 222 VPTNEMRSFVMTLKQSLHYGSSIYEILNTLAADIRSVRLLSLEEKVGKLAAKMSVPLILF 281
Query: 306 FLPVLILVIIGPAILSII 323
+ ++++I P ++ ++
Sbjct: 282 IMIPVVILIAAPGVMRMM 299
>gi|323493498|ref|ZP_08098620.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
gi|323312321|gb|EGA65463.1| Flp pilus assembly protein TadC [Vibrio brasiliensis LMG 20546]
Length = 284
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/261 (21%), Positives = 117/261 (44%), Gaps = 6/261 (2%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ + ++ + + + KL G+ S + +I + +RLV +
Sbjct: 29 SVRKRLDSVARFGAVQASRGGILRWPSNPQRARKLTMLGYHSPQAESIFMTLRLVSMVCG 88
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + + V + I + V+ I + PDAL
Sbjct: 89 GVAWFFYQQLSLDATGIAEIIAVAVITGIAI------DRAVDWRVKAVIHDIAKNIPDAL 142
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+++CV SG S++ V E++ S LS E L T E++ L + Q A N R +
Sbjct: 143 DLMVVCVSSGQSLETTFNTVGEEMKTISQSLSREWLQTANEIAVLDSPQKALFNLDERLK 202
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V N + Q+ ++GT + ++L+++ S+ R +++E E+ + K++ P+++F +
Sbjct: 203 LPEVNNMIVTMAQALKFGTPMAEALKLIASDNRQYQMLELEEWVGKIPAKMSFPLVVFIM 262
Query: 308 PVLILVIIGPAILSIIDTMKD 328
++++I+ P +LS+ T+
Sbjct: 263 MPVVVIIVAPMVLSLFQTIGQ 283
>gi|197106493|ref|YP_002131870.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479913|gb|ACG79441.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 300
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 69/301 (22%), Positives = 138/301 (45%), Gaps = 1/301 (0%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
++ V G E R++++ R D + L + ++R ++
Sbjct: 1 MVGGAVAGLAFLGVSELRLRALRRHRFASAVAAAGGPVADKGAGLLPEQVVSTVRRLGQQ 60
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
++ + ++L AGF S + I L ++ + I +G++ +
Sbjct: 61 SAVRDPAKVSLLRSRLMQAGFFSREAPVIFLGIKAAL-IAAATVGVLMTLPVMIGAKGGN 119
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ + + + P + + R+ +PD LDLL+ VE+G+S+D A+ R
Sbjct: 120 MMGLAMAVGLSLAALYGPDQVLKSRKATREREYADGFPDLLDLLVASVEAGLSLDAAVTR 179
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V +++ + L+ + + EL R+ A+ F +R ++ R L Q++ GT
Sbjct: 180 VTDELERRYPNLTVHLRFLVLELRAGRARKDAWSAFADRLAIEDARALATMLRQAEEMGT 239
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S+GD+L+V + R +R++ AE+KA +L KLTVP+I+F P L+ ++ PA + +I +
Sbjct: 240 SLGDTLQVFSQDMRQKRMLRAEEKALALSAKLTVPLILFIFPSLLTALMLPAAVRMIKVL 299
Query: 327 K 327
Sbjct: 300 G 300
>gi|167620118|ref|ZP_02388749.1| Bacterial type II secretion system protein F domain [Burkholderia
thailandensis Bt4]
Length = 254
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 1/255 (0%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R ++ + + +++ + + +L +AGFR +++++ ++LVV + ++
Sbjct: 1 RRVAQRVASLGERVPVVDATQRMKLAARLASAGFRERRAVSVMAGLKLVVGACAGLAALV 60
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ +Y F LRV + +G P + V +RQ +I PDALDLL+IC
Sbjct: 61 VGAHVPRVGDY-FVLRVLMMAGAFVIGMMLPEHALGFAVARRQKTIAAYLPDALDLLVIC 119
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+G S+ A+RRVA ++G PL++E + EL + A R + +R
Sbjct: 120 TNAGNSLAVAIRRVASELGTICPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRA 179
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+
Sbjct: 180 LVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALI 239
Query: 314 IIGPAILSIIDTMKD 328
GPA++ +I
Sbjct: 240 AAGPAVIRLIAVFHK 254
>gi|239833233|ref|ZP_04681562.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
gi|239825500|gb|EEQ97068.1| type II secretion system protein [Ochrobactrum intermedium LMG
3301]
Length = 336
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/316 (13%), Positives = 109/316 (34%), Gaps = 21/316 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + ++ +L YA+ LG + R R + +++ + R
Sbjct: 8 VMFVVLAVIACAALFYALFYEKLGKKDHAARRFETVRNSGSERAITRSERDRNADIQKRR 67
Query: 74 TRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ ++++ + + + L AG +L + + +
Sbjct: 68 KQLQDNIKDLEARQKQREKNQKYPPLRILLTQAGL--TLTLQKFYLYSGAAAFFATFVAL 125
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ L + F P ++ + ++R +P+ALD+++
Sbjct: 126 LFGAPLLFLPG-----------IAIAGFFGLPRWFVLHRRKQRLKKFLEEFPNALDVIVR 174
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+G+ ++ LR +A P+ E + + A +
Sbjct: 175 ATRAGLPLNDGLRLIAS---EAVEPVKSEFKKVVEAQQIGLSIPEAVGKMPDSMPCPETN 231
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ ++L L R + M+A+ A S+ K + II LP +++
Sbjct: 232 FFAIVIQIQAQAGGNLSEALNNLSKVLRDRKKMKAKVNALSMEAKASAA-IIGALPFIVM 290
Query: 313 VII---GPAILSIIDT 325
V++ P ++++ T
Sbjct: 291 VLVYLTSPLYMTLLFT 306
>gi|118589707|ref|ZP_01547112.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
gi|118437793|gb|EAV44429.1| hypothetical protein SIAM614_04685 [Stappia aggregata IAM 12614]
Length = 340
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 55/318 (17%), Positives = 121/318 (38%), Gaps = 26/318 (8%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T LAVA+ +++ +IY++ P+L ++R+ +VA R Q +
Sbjct: 13 TGLAVALLVMLAVGGIIYSLFQPALSGSKRRDQRVNAVAA-----RPQSENQRKALRDVD 67
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + L+ F ++ K + + K+ AG + + +IF I
Sbjct: 68 RRKRSIQDQLKEFEERQKAKQDKQQKVPLKVKIEQAGL--TWETHHF--------VIFSI 117
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + ++ G +GF P ++++ ++R ++ P+ +D+
Sbjct: 118 VAGVVFLILGLIIGGGNLYIAAGFGFAGSLGF--PRWYVASKRKRRFNAFLEELPNGVDI 175
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V++G+ + ++ VA + P++ E + A R +
Sbjct: 176 IVRGVKAGLPLSDCIKVVAREARD---PVATEFRKITETQIMGISLADAVGKLPERVPLP 232
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + G + ++L L R + M+ + KA S K + II LP
Sbjct: 233 EANFFAIVVAIQQKAGGGLAEALNNLSKVLRGRKAMKRKIKALSAEAKSSAG-IIGSLPF 291
Query: 310 L---ILVIIGPAILSIID 324
I+ +I P + ++
Sbjct: 292 FVGGIMYLISPKYIMVLF 309
>gi|187926431|ref|YP_001892776.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|241665918|ref|YP_002984277.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|187728185|gb|ACD29349.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|240867945|gb|ACS65605.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 329
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 50/333 (15%), Positives = 122/333 (36%), Gaps = 21/333 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS------ 62
D T + +++T A + + + + + + R A+ +
Sbjct: 1 MDDTLITLSLTAAAAGVLVFGGLALRATLTRHRSARKLDTALSDMRATAANPAAPAASPV 60
Query: 63 -------LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
S ++ + + L +V E L G+ E++ +
Sbjct: 61 VPPAARPRPHGSREAQQLQQQIAKVGQRWIDTGLGRRIVTEEDRKLLEECGYYGEHARTV 120
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
R+++P + + G + + +G+ AP + + R
Sbjct: 121 FGGTRILLPPLLAVFGAL--------HASSALFVFVFGFVGFALGYLAPKWLLGRRKESR 172
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ + P +D+L + G+SIDQ+L+ +A + G L+ E + + +R
Sbjct: 173 RRRMDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRSR 232
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + ++ L Q DR+G ++ + LR + R +++ L
Sbjct: 233 EQTLLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLT 292
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++T+ M++ LP L+++ GP + ++ +++
Sbjct: 293 VQMTMIMVMTLLPALLIITAGPGFMGVMRSLQQ 325
>gi|187927683|ref|YP_001898170.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|187724573|gb|ACD25738.1| type II secretion system protein [Ralstonia pickettii 12J]
Length = 325
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/321 (18%), Positives = 119/321 (37%), Gaps = 30/321 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ A AI ++ I V G KR+ + +R
Sbjct: 1 MNEIFYAFAILLFAAVVLCIEGVYQWWNNYHGPEAKRVDA------RIRALSAGGHIGTE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R F + L ++ I L +G S +S+ LL ++
Sbjct: 55 QLSILKKRLLSESPQFQRW--LMSLPRVSTIDRWLEQSG--SAWSVAQLLGYTILTGAGV 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L +G + + G V + P + I++ +KR ++ PDA+
Sbjct: 111 LAVGALL------------PVPFGIVTACALLMSALPVLHIASQRRKRLKKLEAQLPDAV 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + +G S AL V ++I P+ E T E+++ + A N R
Sbjct: 159 DMIARALRAGHSFASALGMVGQEIKE---PMGPEFHTTFEEINYGVSLDEALTNLAKRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ +R A++ G ++ + L + + R + + + S +L+ I+ L
Sbjct: 216 VNDLRYFVIAVLIQRESGGNLAEILDTIGNLVRERLKLYDKIRVLSAEGRLSA-WILGLL 274
Query: 308 PV---LILVIIGPAILSIIDT 325
P +++++ P + ++ T
Sbjct: 275 PFCTAGMILLVNPDFMKVLWT 295
>gi|15963898|ref|NP_384251.1| hypothetical protein SMc02821 [Sinorhizobium meliloti 1021]
gi|307315795|ref|ZP_07595309.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|15073073|emb|CAC41532.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
gi|306898563|gb|EFN29236.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 336
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 52/290 (17%), Positives = 113/290 (38%), Gaps = 21/290 (7%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENI 98
+ E R++ V+ E R + + + + S+ R SL+ KK K+ ++
Sbjct: 35 KKAEGRLRRVSA-SETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSM 93
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+L AG SL + + + ++ ++ G + A +
Sbjct: 94 KKRLLQAGL--SISLAQFYLFSALFGLFAFLVVLLAGAGL-----------LIAAGVALI 140
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P + ++V++R +P++LD+++ ++SG+ ++ ALR +A P+
Sbjct: 141 GAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIAS---DGQEPV 197
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E + N A + + V + + G ++ ++L L
Sbjct: 198 RTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKV 257
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
R R M+A+ A S+ K + II LP ++ ++ P + ++ T
Sbjct: 258 LRERRKMKAKVSALSMEAKASA-CIIGALPFIVATLVYLTSPDYMMVLFT 306
>gi|209545602|ref|YP_002277831.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533279|gb|ACI53216.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 313
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 77/312 (24%), Positives = 142/312 (45%), Gaps = 8/312 (2%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK----QQITSLQKDSASSRLRTR 75
T + I +L+ + L RM+ LR+ + + R+ R
Sbjct: 5 TMIMIAALLMTIGGIFSACYLLFSRMEQEGRRTLRLRQLHELSVGEANAVRTIDGRIWFR 64
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + F + L + + L + F L + + + V ++ +++G +
Sbjct: 65 FLERIGVFFARSGLLSAKTLGELQQTLSSVSFLGTRFLPVFIGAKAVTLVVGIVVGWL-- 122
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ L + + VG AP + + ++ + PDALD+L+IC E
Sbjct: 123 --IHEETRSDGMLYLVLSLGAPMVGLLAPDFIVKRMQAHYLRNVDQGIPDALDMLVICAE 180
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ I+ A+ RV ++ + ++ E LT E+ +R+ F +F RT + +R
Sbjct: 181 AGLPIEAAIGRVGREMTAVNRSVANEFRLTAQEMGVASDRRDVFLHFGERTNLSSMRRIG 240
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL Q+ + G+S+ +LRVL E R + L E E +AA L LT+PMI+F LPV+ LV+
Sbjct: 241 SALNQTLQAGSSVTQALRVLSVEMRKDALTEYEARAARLPVLLTLPMILFILPVVFLVVG 300
Query: 316 GPAILSIIDTMK 327
GPA ++++ +
Sbjct: 301 GPAAVTVMHALG 312
>gi|149927029|ref|ZP_01915287.1| putative tight adherence tadc related transmembrane protein
[Limnobacter sp. MED105]
gi|149824250|gb|EDM83470.1| putative tight adherence tadc related transmembrane protein
[Limnobacter sp. MED105]
Length = 317
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 59/317 (18%), Positives = 129/317 (40%), Gaps = 5/317 (1%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+AI + + + EK + + E+ RK Q ++ ++
Sbjct: 1 MDMNTLLAIGIFLLGLGFVGLAWSLLSQTSRKEKALARIDEYTELRRKVQSSANMRNQVP 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + T + L K V+E L AGF E L+ +++R+ + ++ L+
Sbjct: 61 TSVLTGRIERLGQQFSKTKAFTYFVEEEDKKLLGRAGFGREEDLSRFVLIRIALGLLGLL 120
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
I + + + VI + +GF AP ++ + + R+++ +R +D+
Sbjct: 121 -----IGLFLNWDAGFGAIPMIQVIAVTGIGFMAPKWYLKTVGEGREAAFERELVAVVDV 175
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + G+S+DQ++ + + + + A++ V + + D
Sbjct: 176 MRLLQGVGLSVDQSIEVMTSQLYDLVPITGRMLRRSRAQVKSGVPWIVMLKRMSSMYSSD 235
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ Q L Q +++G ++ + L+ + A++ L KLT M+I LP
Sbjct: 236 EFKSFVQVLEQIEKFGGAVQEPLKQFSDRLVEKERANAKETMGKLTVKLTGVMVITMLPA 295
Query: 310 LILVIIGPAILSIIDTM 326
L+++ GP I+SII
Sbjct: 296 LLIMTGGPGIISIIRAF 312
>gi|307943149|ref|ZP_07658494.1| type II secretion system protein [Roseibium sp. TrichSKD4]
gi|307773945|gb|EFO33161.1| type II secretion system protein [Roseibium sp. TrichSKD4]
Length = 340
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 124/320 (38%), Gaps = 24/320 (7%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D T LAV +SI +++A++ P++ S KR + + + ++ +
Sbjct: 11 DMTALAVMGLVMLSIGGVLFALLQPAMSSD---KRRSQRISTIKGVDGKTPGLAIRNRDA 67
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R L ++ K + D ++ ++ AG + + + + +V ++
Sbjct: 68 DKRRKSVKDQLDQLEQRTQQKNAMRDKPSLRLRIEQAGL--SWDVKRFIQISIVTGVLAT 125
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + + A++ F P +I+ +KR ++ P+ +D
Sbjct: 126 VIFYFFSGNV-----------LIALLGGFAGAFGLPRFYINRRRKKRFTAFMEELPNGVD 174
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ V++G+ + +R V+ + P+S E + + AF R +
Sbjct: 175 IIVRGVKAGLPLGDCVRVVSTEAKD---PVSTEFAKILETQKMGVSLAEAFMKLPERVPL 231
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ G + ++L L R + ++ + A S K + II +P
Sbjct: 232 PEANFFAIVVAIQQSSGGGLSEALNNLSRVLRGRKALKRKIVALSSEAKSSAG-IIGAMP 290
Query: 309 VLI---LVIIGPAILSIIDT 325
VLI L I P ++I+ T
Sbjct: 291 VLISLALFFIAPDYINILLT 310
>gi|315497461|ref|YP_004086265.1| type II secretion system f domain protein [Asticcacaulis
excentricus CB 48]
gi|315415473|gb|ADU12114.1| Type II secretion system F domain protein [Asticcacaulis
excentricus CB 48]
Length = 326
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 125/314 (39%), Gaps = 23/314 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +A + V + S+ + + S KR +++ + K++ + R
Sbjct: 4 ILIAFLSFVILASVGFVLTSG-GASEVAAKRAQAIGMGATTAAKRKSQRTAANRTPEERR 62
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ L+ ++ + ++ +L+ AG ++ + + + I ++ ++
Sbjct: 63 KQILLQLKESEQRERKARL----SLTARLQHAGL--TPNVKTFWIWSVALGIAAAVIVLV 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ + A+ G+ AP W+S L ++R + + DA+D+L+
Sbjct: 117 V-----------SRIPLAALGAGFAFGYGAPRWWLSFLAKRRTTKFTANFADAIDILVRG 165
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + L+ +A+++ PL E +S ++ E R +R
Sbjct: 166 IKSGLPVHDGLKIIAKEL---PAPLGPEFQRLNENISIGMGLDMSLEKMCERMPTPELRF 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--VLI 311
T + + G ++ ++L L RS R+M + KA S + +I P ++
Sbjct: 223 FTIVIAIQQKTGGNLAEALGNLSHVLRSRRMMREKIKALSSEAIASASIIGVLPPGVGIM 282
Query: 312 LVIIGPAILSIIDT 325
+ I P + + T
Sbjct: 283 IYITNPGYMGPLLT 296
>gi|319795783|ref|YP_004157423.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598246|gb|ADU39312.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 316
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 128/320 (40%), Gaps = 9/320 (2%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ +LAVA +++ I A + + +R +S +R+ T ++ S
Sbjct: 2 TLTSAQLAVASLVLLALGLTIAAGALIATE----LRRARSGHAIGRAIRRGVETQIEPAS 57
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ R L + LV + + G S+ + I LV R+ + ++
Sbjct: 58 TAEPEVPRSDIELPFHWLDTRMGRALVADEDRQLIDQCGLPSQRAQLIFLVTRIALAVLL 117
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L + + + +++ GF P + R+ + + P +
Sbjct: 118 PLLVYALW-----STGHSQRTVIAVLVVAFVFGFMVPKWVLGQFAAARRERVAQELPLFI 172
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL + G+S+DQ+L+ +A D L E+ + S R+ + + +
Sbjct: 173 DLLRLLQGVGLSLDQSLQIMANDFSHVLRVLGYELAFANRQYSQGRTREHSLQRLATLHK 232
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + L+Q DR+G +I + LR+ R R E + + + K+T M+ L
Sbjct: 233 NENLGGLVSLLVQVDRHGGAIQEPLRIFSDRLREHRRSEMKDRIGKITVKMTGVMVTTLL 292
Query: 308 PVLILVIIGPAILSIIDTMK 327
P LI+V GP ++II ++
Sbjct: 293 PALIIVTAGPGFIAIIRSLG 312
>gi|325291655|ref|YP_004277519.1| components of type IV pilus [Agrobacterium sp. H13-3]
gi|325059508|gb|ADY63199.1| components of type IV pilus [Agrobacterium sp. H13-3]
Length = 334
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 125/326 (38%), Gaps = 22/326 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T L +A A+S +L YA + + + E + +
Sbjct: 1 MDPTILLLAALVAISAGALAYAFLFQQIEVEKKTTSRVKRVKAAETDHANIKAARDRVQE 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ R SLR KK + K + + KL AG + S+ ++
Sbjct: 61 LGKRRKSMQDSLREMEKKQSEKAKKAKNVGLREKLVQAGL--QLSVRQFHLLSAGAAAFS 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ +++ + A+++ V P + ++++RQ +P+AL
Sbjct: 119 VVIALLYGLSL-----------LIALLIGAVVALGLPRWVLGFILKRRQKKFLEEFPNAL 167
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ ++SG+ ++ A+R +A P+ E + E
Sbjct: 168 DVMCRSIKSGLPLNDAVRLIAS---DGQEPVKTEFQRVVDAQQVGIGIPQGIERMMLTVP 224
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + + + G ++ ++L L R R M A+ A S+ K + +II L
Sbjct: 225 LFEVSFFSTVINIQAQAGGNLSEALSNLSKVLRERRKMRAKVNALSMEAKASA-VIIGAL 283
Query: 308 PVLILVII---GPAILSIIDT-MKDH 329
P ++++++ P LS++ T M+ H
Sbjct: 284 PFIVMLLVHFTSPDYLSVLFTDMRGH 309
>gi|302391032|ref|YP_003826852.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302203109|gb|ADL11787.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 327
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/316 (15%), Positives = 122/316 (38%), Gaps = 23/316 (7%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
E+ + + + + + K E R Q T+L ++
Sbjct: 1 MEIIILPAVFLVVTTAVVVSYKLLTAREAKVKERLDKYSAIEEGRIGQNTALDREEDVGE 60
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
++ + L F + L + + ++ +L+ + ++ +++ LV +I ++G
Sbjct: 61 RKSLKKRLLEKFNQF--LTSFSLVASLEAELQKTDLPLK--VSEFIIINLVSCVILGLIG 116
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I+ + + P ++ +KR D+L ++
Sbjct: 117 ILVSNNLLVPVLLLSLGLI------------IPYFYLKYSQKKRLDKFNEQINDSLTIIS 164
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G S QAL VA+++ P+SEE+ + E++ + Q A +R + D +
Sbjct: 165 NSLKAGYSFFQALEMVAKEM---PPPISEEITRVLKEMNLGASPQDALTALTDRVESDDL 221
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV-- 309
A++ + G ++ + L + R ++ E + + +++ +II LPV
Sbjct: 222 ELVVTAVLIQRQVGGNLSEILDNISDTIRERIKIKGEIQTLTAQGRMSG-LIIGLLPVGL 280
Query: 310 -LILVIIGPAILSIID 324
+L +I P ++ +
Sbjct: 281 GGMLFLISPDYMAPLF 296
>gi|307320430|ref|ZP_07599847.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306893996|gb|EFN24765.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 336
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 52/290 (17%), Positives = 113/290 (38%), Gaps = 21/290 (7%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENI 98
+ E R++ V+ E R + + + + S+ R SL+ KK K+ ++
Sbjct: 35 KKAEGRLRRVSA-SETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSM 93
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+L AG SL + + + ++ ++ G + A +
Sbjct: 94 KKRLLQAGL--SISLAQFYLFSALFGLFAFLVVLLAGAGL-----------LIAAGVALI 140
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P + ++V++R +P++LD+++ ++SG+ ++ ALR +A P+
Sbjct: 141 GAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIAS---DGQEPV 197
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E + N A + + V + + G ++ ++L L
Sbjct: 198 RTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKV 257
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
R R M+A+ A S+ K + II LP ++ ++ P + ++ T
Sbjct: 258 LRERRKMKAKVGALSMEAKASA-CIIGALPFIVATLVYLTSPDYMMVLFT 306
>gi|53719426|ref|YP_108412.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei K96243]
gi|76810064|ref|YP_333441.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei 1710b]
gi|121598751|ref|YP_993001.1| type II secretion system protein F [Burkholderia mallei SAVP1]
gi|124385777|ref|YP_001026333.1| type II secretion system protein F [Burkholderia mallei NCTC 10229]
gi|126450336|ref|YP_001080393.1| type II secretion system protein F [Burkholderia mallei NCTC 10247]
gi|134282407|ref|ZP_01769112.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 305]
gi|217421557|ref|ZP_03453061.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 576]
gi|226196355|ref|ZP_03791937.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pakistan 9]
gi|237812170|ref|YP_002896621.1| bacterial type II secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|254177530|ref|ZP_04884185.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254188724|ref|ZP_04895235.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254259567|ref|ZP_04950621.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1710a]
gi|254297711|ref|ZP_04965164.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 406e]
gi|254358538|ref|ZP_04974811.1| type II secretion system protein [Burkholderia mallei 2002721280]
gi|52209840|emb|CAH35812.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei K96243]
gi|76579517|gb|ABA48992.1| putative fimbriae-related membrane protein [Burkholderia
pseudomallei 1710b]
gi|121227561|gb|ABM50079.1| bacterial type II secretion system protein F domain [Burkholderia
mallei SAVP1]
gi|126243206|gb|ABO06299.1| bacterial type II secretion system F domain protein [Burkholderia
mallei NCTC 10247]
gi|134246445|gb|EBA46534.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 305]
gi|148027665|gb|EDK85686.1| type II secretion system protein [Burkholderia mallei 2002721280]
gi|157807239|gb|EDO84409.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 406e]
gi|157936403|gb|EDO92073.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pasteur 52237]
gi|160698569|gb|EDP88539.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|217395299|gb|EEC35317.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 576]
gi|225931572|gb|EEH27577.1| bacterial type II secretion system protein [Burkholderia
pseudomallei Pakistan 9]
gi|237503370|gb|ACQ95688.1| bacterial type II secretion system protein [Burkholderia
pseudomallei MSHR346]
gi|254218256|gb|EET07640.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1710a]
Length = 314
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 1/263 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 53 DDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 113 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 171
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 172 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 231
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 232 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 291
Query: 306 FLPVLILVIIGPAILSIIDTMKD 328
+P + L+ GPA++ +I
Sbjct: 292 VMPTVALIAAGPAVIRLIAVFHK 314
>gi|84386792|ref|ZP_00989817.1| putative type IV pilus protein [Vibrio splendidus 12B01]
gi|84378320|gb|EAP95178.1| putative type IV pilus protein [Vibrio splendidus 12B01]
Length = 283
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/263 (22%), Positives = 119/263 (45%), Gaps = 6/263 (2%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
K + TR S + + + KL G+ + + L +RL+
Sbjct: 25 KRDVVAERLTRVSSYSSKYTTASSKWRFQGAKPRRQKLILIGWLNPNAEIYFLGLRLLTM 84
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ I + + + + V+ + V + + I R P
Sbjct: 85 VTGSIAWYVTRIQVLNMNSVSECIAIAIVVG------ILFDRILDWRVNQVRMQISRVIP 138
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DA+DL+++CV SG++++ R V E++ S LS E LLT E+S L + Q A N
Sbjct: 139 DAVDLMVVCVASGLTLEAVFRCVGEEMRAISPALSREWLLTATEISVLDSPQTALSNLDK 198
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R Q+ + N + Q+ +YGT + ++L+++ S++R +E E+ + K++ P+++
Sbjct: 199 RVQLPDINNIVTTMNQALQYGTPLAEALKLIASDSRQYHFLELEEWVGKIPAKMSFPLVV 258
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
F + ++ +I+ P +LS+ T+
Sbjct: 259 FIMLPVVGIIVVPIMLSLKQTLG 281
>gi|161524901|ref|YP_001579913.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189350349|ref|YP_001945977.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342330|gb|ABX15416.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189334371|dbj|BAG43441.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 330
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/292 (18%), Positives = 116/292 (39%), Gaps = 8/292 (2%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVD 95
L++RM ++ + + + + + R + L + L +V
Sbjct: 41 DALDRRMATLEAAKARSAPDGDAAAKSEVPGRQSVKRLLERLSATGMRWLDTGLGKHIVA 100
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ L G+ S + L R+ I+ L ++ G K + V + +
Sbjct: 101 DEDRRLLEQCGYVDARSRGLFLSARMACGIVLPFLFAVFASGRMKGGYW-----VIGMCV 155
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+G P +++ R+ + P +D+L + G+S+DQ+L+ V D G
Sbjct: 156 AFALGLMLPKLYVQRRAAARRQCVDDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMM 215
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS E+ + + R+ + + + +R + ++Q D++G ++ + L+
Sbjct: 216 PVLSSEVGVAQRQFVAGRTREQSMQRLSGGFDNEDLRAIVRLMVQVDKHGGAVQEPLKQF 275
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R R ++ L K+T M++ LP L++V GP L+++ +
Sbjct: 276 GDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGFLAVMHALS 327
>gi|85707699|ref|ZP_01038765.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
gi|85689233|gb|EAQ29236.1| hypothetical protein NAP1_00650 [Erythrobacter sp. NAP1]
Length = 323
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/316 (15%), Positives = 116/316 (36%), Gaps = 30/316 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + S Y ++ ++R++++ ++ S K +
Sbjct: 1 MEIIQTLLITVVIFSALVAGYILLTGPAAGKAQKRRLEALRYRHSESTDAKVESQFKKAI 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++R + + E + +L G ++++ L V L + ++
Sbjct: 61 AARKPKAHKVA----------GSGSRTEALEVRLDRTG--KGWTVSQYLYVTLGIILVVG 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I ++ +VG P + +S ++KR + + D ++
Sbjct: 109 VLLYI-----------QTGAPFLSLAAGAFVGLGLPHLVVSFFIKKRTNDFNAKFADGIE 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL+ + SG+ + + L VA+++ G P+ E + + + + + +R +
Sbjct: 158 LLVRGLRSGLPVTETLAVVAQEVPG---PVGLEFKGIVERIKIGKTMEDSLQETADRLGI 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
T L G ++ ++L L R M+ + KA S K + I+ LP
Sbjct: 215 PEFNFFTITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSSESKASA-YIVGSLP 273
Query: 309 VLILVII---GPAILS 321
++ +I P+ +
Sbjct: 274 FIVFGLIYSVNPSYIG 289
>gi|167911026|ref|ZP_02498117.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 112]
Length = 264
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 1/263 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 3 DDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 62
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 63 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 121
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 122 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 181
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 182 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 241
Query: 306 FLPVLILVIIGPAILSIIDTMKD 328
+P + L+ GPA++ +I
Sbjct: 242 VMPTVALIAAGPAVIRLIAVFHK 264
>gi|121607251|ref|YP_995058.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
gi|121551891|gb|ABM56040.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
Length = 313
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 59/281 (20%), Positives = 113/281 (40%), Gaps = 14/281 (4%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
R + + + RL + + + L + KLR AG
Sbjct: 34 RPEDRSYKDPPPLAMRLLWWPIQWIGQHLGP-RLGTGKSVRTLQLKLRQAGLDYTLDPAQ 92
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG-----------AVILIGYVGFCAP 164
+ R+V + L + +D L + A+ + +G+ P
Sbjct: 93 FIASRIVSAFVATALLWWAVSSFDGLPIGAGGVDAARRYIATGTYLQAMAIGALLGWFYP 152
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++W+ + + R+ + R P LD++ +CVE+G+++ A+ + G + EE
Sbjct: 153 AIWLKDRIALRRRELLRMMPFFLDIITLCVEAGLNMHGAIAQAVA--KGPQGTVREEFQR 210
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ ++ R + + R V A+IQ++R G ++G LR + RSER
Sbjct: 211 VLRDVRAGKARTESLRDMAERLNEPGVTQFVMAVIQAERMGMNLGPVLRAQADQQRSERF 270
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ AEK A K+ +P+I F P +V++ P + I+T
Sbjct: 271 LRAEKLAMEAPVKMLLPLIAFIFPCTFIVLLFPIAMKFINT 311
>gi|126454623|ref|YP_001066155.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242317969|ref|ZP_04816985.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106b]
gi|126228265|gb|ABN91805.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106a]
gi|242141208|gb|EES27610.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 1106b]
Length = 314
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 1/263 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 53 DDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 113 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 171
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 172 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 231
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 232 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 291
Query: 306 FLPVLILVIIGPAILSIIDTMKD 328
+P + L+ GPA++ +I
Sbjct: 292 VMPTVALIAAGPAVIRLIAVFHK 314
>gi|319943385|ref|ZP_08017667.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
gi|319743200|gb|EFV95605.1| type II secretion system protein [Lautropia mirabilis ATCC 51599]
Length = 298
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 121/308 (39%), Gaps = 20/308 (6%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
++ V++ +L+ + + L E+ ++Q+ L
Sbjct: 7 SVLPFVAVGALVLCIWLFMLAGSRAAA---------EVPKQQKNEYQDDPPRYWALLGWL 57
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ +V L + + +LR G + + +++ ++ +
Sbjct: 58 GHATTFWVTPLVSPTMRR--RLHEQLRRGGLEFALTPEQFVAGQVLGA-------LLALA 108
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ +L VG P W+ +L +R I +A P LD++ + +E+
Sbjct: 109 LLVLAWLPHGLPSLPWCVLALVVGAFLPVSWLRDLGARRTRQIAKALPFYLDIITLAIEA 168
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G ++ AL+ + P+SEE+ + ++ R + R ++ + N
Sbjct: 169 GSNMTGALQHAVDKGPT--GPMSEELRRVLRDIRAGRTRAESLRALAERLRIPAISNWVA 226
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A++ +++ G+S+G LR + R+ER M+AE A K+ P++I P +++
Sbjct: 227 AILTAEKQGSSLGPILRAQADQRRNERFMQAEAMALKAPVKMLFPLMICIFPCTFIIVFF 286
Query: 317 PAILSIID 324
P + I++
Sbjct: 287 PIAIRIME 294
>gi|328545275|ref|YP_004305384.1| Bacterial type II secretion system protein F domain [polymorphum
gilvum SL003B-26A1]
gi|326415017|gb|ADZ72080.1| Bacterial type II secretion system protein F domain [Polymorphum
gilvum SL003B-26A1]
Length = 339
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/318 (19%), Positives = 130/318 (40%), Gaps = 25/318 (7%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T +AVA+ A SI +IYA+ P L E+R+ +A R Q + + +
Sbjct: 13 TTIAVALLAAFSIGGVIYALFEPVLSGSKRREQRLGQIAA-----RPQAASDRRPVRDAE 67
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDE-NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R L+ F +K + + + N+L AG ++ ++ +V ++FLI
Sbjct: 68 KRRKSVQDQLKEFEEKQKARQKRANSLTLTNRLEQAGL--DWERKHFIIFSIVSGLVFLI 125
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG + + + + + G P +++ +KR + P+A+D+
Sbjct: 126 LGFLL-----------TRSPILTLAIAFVGGLGFPRWYLARRRRKRFDAFLNELPNAVDI 174
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V++G+ + ++ VA + P++ E + A +R +
Sbjct: 175 IVRGVKAGLPLGDCIKIVASEARD---PVAGEFRKIVEAQVMGLTLTEAVGRLPDRVPLA 231
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
+ + G + ++L L R + ++ + +A S K + +I + F+
Sbjct: 232 EANFFAIVVAIQQQAGGGLSEALGNLGKVLRGRKTLKGKIRALSSEAKSSAAIIGSLPFI 291
Query: 308 PVLILVIIGPAILSIIDT 325
LIL +I P + ++ T
Sbjct: 292 VSLILYLIAPDYIMLLFT 309
>gi|261820219|ref|YP_003258325.1| type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
gi|261604232|gb|ACX86718.1| Type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
Length = 319
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 75/291 (25%), Positives = 145/291 (49%), Gaps = 5/291 (1%)
Query: 39 GELEKRMK-SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
+LE RM+ + Q+ + +A S L + + L ++L+ + N
Sbjct: 33 KQLEIRMRGHLPTASIEAASQENILRGQGTALSPLLEKLLQPLAIQGERLS-GSDRDRRN 91
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L AG R ++ L++ + + I ++G+ + V A ++
Sbjct: 92 LRRLLDLAGLRRNEAVGWLVMGKFAAGALLAIAL---VWGWLPPADRAGLTGVAAGLIGF 148
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+VG P W+ R + RA PDALDL+++C E+G+ I + L+ V++++G S
Sbjct: 149 FVGSMVPEWWLKWRAASRGEKLARAVPDALDLMVVCAEAGLPIGRVLQVVSKELGLSSPE 208
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+++E+ T AEL L +R +A + RT++ + + LIQ++RYGT + +LR +
Sbjct: 209 MADELHYTAAELQILSDRTLAMRHLAERTRVSEIESMVATLIQAERYGTPLSQALRTIAD 268
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E+R ++ E+KA L +L+VP++ LP +I ++ PA++ +I +
Sbjct: 269 ESRKTLILGLEEKAGKLPAQLSVPLMALILPPIIAIMASPALVRVIRLLAQ 319
>gi|254473793|ref|ZP_05087188.1| type II secretion system protein [Pseudovibrio sp. JE062]
gi|211957179|gb|EEA92384.1| type II secretion system protein [Pseudovibrio sp. JE062]
Length = 339
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/313 (14%), Positives = 118/313 (37%), Gaps = 23/313 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +S+ + + ++ P +L KR +S+ + S +K ++R +
Sbjct: 15 YLITALIMISVVGVTFTLLAPLFSKDKLGKRKESLV---QKDISGLKGSNKKLDITARRK 71
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + K + + AG ++ ++ ++ ++ ++
Sbjct: 72 SVQDQLNAMEAAQAAKKKNADKPIFADWIGQAGL--NWTKPRYYAYSVICGVLLFLVSML 129
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
Q ++ L+ F P ++S +KR + +P+A+D+++
Sbjct: 130 -----------SGQSIWISLALLFVGIFGLPRFYVSRARKKRFNRFLEEFPNAVDIIVRG 178
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + + A + P+ E L + ++ A ++ R +
Sbjct: 179 IKSGMPLGDCMHIAASEAKD---PVGTEFSLVLDKMQMGMPLAEAIQSLPKRVPLQETNF 235
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI-- 311
+ + G S+ ++L L R + M+ + +A S K + II LP ++
Sbjct: 236 LAIVVTIQAQAGGSLSEALGNLSKTLRQRKEMKGKIRAVSQEAKSSAA-IIGSLPFIVTA 294
Query: 312 -LVIIGPAILSII 323
L ++ P + ++
Sbjct: 295 LLFVLSPDYIKLL 307
>gi|323137429|ref|ZP_08072507.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
gi|322397416|gb|EFX99939.1| Type II secretion system F domain [Methylocystis sp. ATCC 49242]
Length = 326
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/304 (16%), Positives = 113/304 (37%), Gaps = 28/304 (9%)
Query: 26 SLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
++YA V P L + +KR ++ R + ++ K + N
Sbjct: 17 GVMYAFVYPYLSGEIKAQKRTAALTSGRSERGAVAGRGTVDPAKRRKMIAESLKEVENQN 76
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
KK L + ++ AG ++ + L+ + ++ ++
Sbjct: 77 KKKKL-------TLEQRIMQAGL--TWTPQVFLIGSVAFGLLVAFFLLVVNGDI------ 121
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + F P+ +S L ++R S +P ++D+++ V++G+ +
Sbjct: 122 -----MVVIGGAAVGIFGLPNWLLSFLRKRRISKFIEEFPGSIDVIIRGVKAGLPVADCF 176
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R +A + P+ E I + + A E F R + + + +
Sbjct: 177 RVIASEGQE---PVRGEFRRIIESQAIGLSVGEAVERFAERVPVPEASFFSIVINIQQKS 233
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAILS 321
G ++ ++L L R + M+ + KA S K + II LP L+ + + P+ +
Sbjct: 234 GGNLSEALGNLSRVLRDRKKMKGKVKAMSSEAKASAG-IIGSLPFLVGGAVYLTTPSYMM 292
Query: 322 IIDT 325
++ T
Sbjct: 293 VLFT 296
>gi|254252516|ref|ZP_04945834.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
gi|124895125|gb|EAY69005.1| Flp pilus assembly protein TadC [Burkholderia dolosa AUO158]
Length = 333
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/297 (19%), Positives = 119/297 (40%), Gaps = 11/297 (3%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK------KLNLKAI 92
L++RM ++ + Q D+ +R R ++ L
Sbjct: 41 DALDRRMAALDAAKARQAPNDAAPAQFDAQRTRGGQRVARFLERLSAAGMRWLDTGFGQY 100
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+V + L G+ + + L R+V I +L I G K + +
Sbjct: 101 VVAQEDRRLLEQCGYIDARTRGLFLSARIVCGIALPLLFAIVASGRMKGSLW-----LIG 155
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ +GF P ++ R+ S+ P +D+L + G+S+DQ+L+ V D
Sbjct: 156 LFAAFGLGFMLPKFYVKRRAAARRQSVVDELPLLVDMLRLLQGVGLSLDQSLQVVTNDFR 215
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G LS E+ + + + R+ + + + +R + +IQ D++G ++ + L
Sbjct: 216 GMLPVLSSEVGIAQRQFAAGRTREQSLQRLSGGFDNEDLRAVVRLMIQVDKHGGAVQEPL 275
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ R R ++ L K+T M++ LP L++V GP +L+++ + H
Sbjct: 276 KQFGDRLRETRRAMLRERIGRLTVKMTGVMVLTLLPALLIVTAGPGMLAVMHALSAH 332
>gi|187919328|ref|YP_001888359.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187717766|gb|ACD18989.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 325
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/317 (17%), Positives = 117/317 (36%), Gaps = 28/317 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + A+ +++ I AV + K V E +R
Sbjct: 1 MNTSFIGFAVLAFLAVVLAIEAVYLFWSSHHG-----KDVKRMDERIRALSAGGNVSSQQ 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + L I + +L+ +G ++S+ + L+ ++
Sbjct: 56 LSILKQRMLS--ESPFVTQLLLRIPRVHALDRQLQQSGL--KWSVARFVTYTLLCAVLGA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G + + + + V P++ + KR ++R PDA D
Sbjct: 112 LGGFVLLLPAPVMG------------VFAVVASLLPTLILCRKRTKRVLQLERQLPDAAD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S AL V E++ PL E L E+++ + A N NR +
Sbjct: 160 LIARALRAGHSFPAALGMVGEELPN---PLGGEFALVFDEINYGVSMSDALLNMVNRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +R A++ G ++ + L + R + + + S +L+ ++ LP
Sbjct: 217 EDLRYFVIAVLIQREAGGNLAEILGSIAGIIRERLKLLGKVRVLSAEGRLSA-WVLGVLP 275
Query: 309 VLILVI---IGPAILSI 322
IL + + P +S+
Sbjct: 276 FAILGLLSVLNPGYISV 292
>gi|198284409|ref|YP_002220730.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665047|ref|YP_002427077.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248930|gb|ACH84523.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517260|gb|ACK77846.1| tight adherence protein TadC [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 312
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/312 (18%), Positives = 123/312 (39%), Gaps = 7/312 (2%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ TA+++ S+ AV++ R+ +A R + + S +
Sbjct: 6 ALLTALAVASIALAVLLGVFFW---AYRLVMIARARSAMDRVAPKLEAGSEPSEVAAQME 62
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L N + +L L AG+R + +I +R ++P++ +++ +
Sbjct: 63 RGPLANV--RWDLLDRWRSGEDARLLLRAGYRRPAAPSIFNTIRFLLPVVLVVVTGMTEH 120
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ +++ + VG+ P + + + R ++ P +D+L +
Sbjct: 121 LLAPHMLK--LTFWMSLLAVAIVGYLLPKFILESKAKSRGDAVNAEIPFFVDMLALLQGV 178
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+S++Q+L +A+ L+ EM ++ R A + +
Sbjct: 179 GLSLEQSLASLAQTSEAGIPLLAGEMREMGKHIAIGRPRVEAMQKLAEQLGDPDFEELVN 238
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L Q +R+G + LR + +R M ++ L K+T M + LP L+L+ G
Sbjct: 239 MLRQIERFGGDVAQPLRDFAGRLQEKRQMALRERVGKLNVKMTAVMTLTMLPALLLITAG 298
Query: 317 PAILSIIDTMKD 328
PA+L+++
Sbjct: 299 PAVLALLRFFDK 310
>gi|115361041|ref|YP_778178.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286369|gb|ABI91844.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 323
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 77/319 (24%), Positives = 144/319 (45%), Gaps = 6/319 (1%)
Query: 9 FDATELA-VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ + + IF +V L + +R A + S
Sbjct: 1 MQNLSVIHTVMLAGLFIFVAGGVLVAMLLFAPRNIERRIQQASGASAGIGGGADGDGQTS 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S+ + + + + +L AG+R+ + + + V+ ++
Sbjct: 61 RWIAKLVELSQPISRLS---VPQEGWENSPLRIRLMNAGWRNPNAGALYFAAKTVLALVL 117
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + + + + +G+ P+V +S + RQ I +PDAL
Sbjct: 118 PGAALLALATTRLAEQRMLLSFILVAL--AGIGYYVPNVILSRRIATRQRVIFEDFPDAL 175
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL +CVE+G+ +D AL RV+E++ +S ++ E+ L + E+ ++ A NF RT
Sbjct: 176 DLLTVCVEAGLGLDAALMRVSEELRFRSEVVAGELDLLLLEMRSGFTKETALRNFALRTG 235
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + + LIQ+DR+GTSI +SLRVL R+ R M AE++AA + KL P+I
Sbjct: 236 VEDIESFCAMLIQADRFGTSIAESLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFNIF 295
Query: 308 PVLILVIIGPAILSIIDTM 326
P L+ V++GPA++ + +
Sbjct: 296 PALMCVLLGPAMIHVYRVL 314
>gi|317122043|ref|YP_004102046.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592023|gb|ADU51319.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 331
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 69/288 (23%), Positives = 130/288 (45%), Gaps = 8/288 (2%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
KR++ + + + L + + LR + + V
Sbjct: 52 ARKRLRELGRRGAPPDQAEAEELAQPFSRRVLRPWWEALVAAAERW---TPQGVAARWER 108
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
L+ AG L L+ ++ + LG++ L R ++L+G +G
Sbjct: 109 LLQTAG--RPLGLGALVCLKAAGAAVGGGLGLLSAGWLPDPLGGSPAGRAAGLVLLGLLG 166
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P + + +R+ + RA PD +DLL + VE+G+ D A+++V+E P+S
Sbjct: 167 WGLPDAVLRDRAARRRRQMARALPDVMDLLSVSVEAGLGFDGAIQKVSEKF---PAPVST 223
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + EL R+ A + +R ++ +R+ A+IQ+DR G S+ LRV + R
Sbjct: 224 EFRQYLKELRLGVEREEALRSLADRCELPELRSFAAAVIQADRLGVSLARVLRVQAEQLR 283
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+R AE++A K+ +P+++F P L +V++GPA++ I+ D
Sbjct: 284 FQRKQRAEEQAMKTPIKMLLPLVLFIFPTLFIVLLGPALIQILAAFND 331
>gi|119962497|ref|YP_948623.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119949356|gb|ABM08267.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 296
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 9/268 (3%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
T+L + + + + L + L G + L LL++
Sbjct: 35 RTNLSRSAGMATDLGAQPSAFNLHRLGAKLTPKGYTIWLDKLLAKLGRPAGMPLGRLLIL 94
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + + ++G+++ P + + + P + I +RQ +I
Sbjct: 95 KPALALAAGLVGLLFFL------RAPSGQGFLLYLAAVLLVYFIPDLIIHGRAAERQKAI 148
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P+ LD +LI VE+G+ + A+ R ++ S PL+ EML T+ ++ +R+ A+
Sbjct: 149 QTELPNTLDQMLISVEAGLGFEGAMARAGQN---GSGPLAMEMLRTLQDMQAGRSRKEAY 205
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + +R A++Q+D YG +I + LR + R +R AE++A L K+
Sbjct: 206 VALAERVDVHDLRAFVGAIVQADTYGIAIANVLRTQAKQMRIKRRQRAEEQAMKLPVKVL 265
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
P++ LPVL +VI+GPA+L+++ +
Sbjct: 266 FPLMFCILPVLFIVIMGPAVLNVMTNLA 293
>gi|194335918|ref|YP_002017712.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308395|gb|ACF43095.1| type II secretion system protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 332
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/313 (13%), Positives = 111/313 (35%), Gaps = 19/313 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
++ +++ ++ + +L + K ++ +Q + + R
Sbjct: 4 FLISFFAFLAVMLIMLLLYGVWFHFFDLRNQAKKKHLQAIYNAVRQSGQSLGNEQTPRQE 63
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ R+ + + L+ A + RL+V ++ +
Sbjct: 64 SAIETWFRSRSRTFETWLRSRSGTLETLLQRA-------HTPFTIGRLIVLML-----AL 111
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L Q ++++ P +W+ ++R+ P+ALD +
Sbjct: 112 FTLVVVLGLLLLPQTNPLHLLMLAVAIASMPVLWLLRQAKQRRKVFGDKLPEALDYISRA 171
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S+ A+ V +++ P+ E E+SF + A + +R Q + +
Sbjct: 172 MRAGHSLTSAIGMVGKELPD---PIGYEFKTVFDEISFGIPFKDAIGHLADRIQSNDLNF 228
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI-- 311
+L G ++ + L L R + + + S + + I+ +P +
Sbjct: 229 FVISLKIQHETGGNLAELLHGLAKTIRERVKLRGKVRTLSSEGRASA-WILGTMPFVFAG 287
Query: 312 -LVIIGPAILSII 323
L++I P +S++
Sbjct: 288 ILMLINPGYISVL 300
>gi|126440858|ref|YP_001058913.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|254198255|ref|ZP_04904677.1| bacterial type II secretion system protein [Burkholderia
pseudomallei S13]
gi|126220351|gb|ABN83857.1| bacterial type II secretion system protein [Burkholderia
pseudomallei 668]
gi|169654996|gb|EDS87689.1| bacterial type II secretion system protein [Burkholderia
pseudomallei S13]
Length = 314
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 72/263 (27%), Positives = 134/263 (50%), Gaps = 1/263 (0%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
D + + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 53 DDGARSMPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGA 112
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + ++ +Y LRV + +G P + ++ +RQ +I PD
Sbjct: 113 CAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPD 171
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 172 ALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAAR 231
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 232 IGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLF 291
Query: 306 FLPVLILVIIGPAILSIIDTMKD 328
+P + L+ GPA++ +I
Sbjct: 292 VMPTVALIAAGPAVIRLIAVFHK 314
>gi|257791502|ref|YP_003182108.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475399|gb|ACV55719.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 295
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/317 (20%), Positives = 140/317 (44%), Gaps = 27/317 (8%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
E+ VA+ S +Y + L + DS+
Sbjct: 1 MEMMVALLIGCSAGFAVYLLFASRLFPSYRK------------------IEKPPDSSVDA 42
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + +FV + + + N+ N++ AAG + + + +++ ++ +I
Sbjct: 43 NVSDRMAAAASFVSNMLPLSRAQERNLRNQIAAAGLNMK--PSTFYGLSVILSLLGMIAL 100
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+++ L V+ G +G P ++ +RQ +I R +DLL
Sbjct: 101 LVFSPYIVGSDTTSLLLFNAVVVAAGILG---PRGFLILKRNERQEAINRELASVIDLLS 157
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDC 250
I VE+G+++++A+R V+E + G L +E+ L +++ +R+ A +R Q +
Sbjct: 158 ISVEAGLTMERAMRHVSERLDGT---LCKEIALCERDINLLGYSREDALRRLADRCQTEG 214
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V ++I S + G+SI L++ S R+ + E+K L K+ PM +F +P L
Sbjct: 215 VSMFVSSVIVSAKSGSSISRVLKMQASVARNRQFTALEEKVEKLPTKMIFPMSMFIMPSL 274
Query: 311 ILVIIGPAILSIIDTMK 327
+L+++ PA+L+++++
Sbjct: 275 MLIVMAPAVLTLVESFS 291
>gi|15887569|ref|NP_353250.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155106|gb|AAK86035.1| components of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 334
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/321 (19%), Positives = 123/321 (38%), Gaps = 21/321 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T + +A+ A+S +L YA + + + E + +
Sbjct: 1 MDPTIVLLAVLVAISAGALAYAFLFQQIEVEKKTTSRFKRVQAAETDHTNIKAARDRVQE 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S+ R SLR+ KK N K + ++ +KL AG S+ ++
Sbjct: 61 LSKRRKSMQDSLRDMEKKQNEKAKKAKNVSLRDKLVQAGL--TISVRQFHLLSAGAAACA 118
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +I+ + A+ + P ++ L+++RQ +P+AL
Sbjct: 119 AFISLIYGLSL-----------LTALPIAVVAALGLPRWVLAFLLKRRQKKFLEEFPNAL 167
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ ++SG+ ++ A+R +A P+ E + E
Sbjct: 168 DVMCRSIKSGLPLNDAVRLIAS---DGQEPVKTEFQRVVDAQQVGIGIPQGIERMMLTMP 224
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V + + + G ++ ++L L R R M A+ A S+ K + +II L
Sbjct: 225 LFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVNALSMEAKASA-VIIGAL 283
Query: 308 PVLILVII---GPAILSIIDT 325
P ++++++ P LSI+ T
Sbjct: 284 PFIVMLLVHFTSPDYLSILFT 304
>gi|16263304|ref|NP_436097.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307304377|ref|ZP_07584128.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
gi|14523983|gb|AAK65509.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306902579|gb|EFN33173.1| Type II secretion system F domain protein [Sinorhizobium meliloti
BL225C]
Length = 333
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/319 (16%), Positives = 114/319 (35%), Gaps = 19/319 (5%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
AT L + + + I +++ + + ER R + S ++
Sbjct: 1 MATSLLFPVFVFLLASTSIGGMMVAAFYPRVSKASAYRQRFERISARAEDKRSEPAETDG 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R K+LR +K A + +LR +G FL+
Sbjct: 61 RDRRRSVEKTLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAY------------FLV 108
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + +L + +V G P ++++ R + +P+A+D+
Sbjct: 109 CAGATLATWVVMLLLLGLGPLVSVGFAIAGGLLLPHLYVNMKRNARFTRFAAEFPNAVDV 168
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ +++G+ + LR +A P+ E L + + + A + R +
Sbjct: 169 IVRGLKAGLPMPDCLRVIA---MEAQEPVKGEFLAIVQDQTLGIPVDEAVKRMSERMPLA 225
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ R G S+ ++L L R + M+ + KA S K + II LP
Sbjct: 226 EANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAKSSAG-IIGALPF 284
Query: 310 LI---LVIIGPAILSIIDT 325
L+ + + P ++++ T
Sbjct: 285 LVAGAVYFMSPDYMALLFT 303
>gi|218708112|ref|YP_002415733.1| putative bacterial type II secretion system protein [Vibrio
splendidus LGP32]
gi|218321131|emb|CAV17081.1| putative bacterial type II secretion system protein, TadC-like
protein [Vibrio splendidus LGP32]
Length = 301
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/307 (17%), Positives = 128/307 (41%), Gaps = 20/307 (6%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + + + + + R+ ++A + + + ++
Sbjct: 12 LFFAWAGVAFGLLLIFYWLVVCTQKKHRIAALAKHHRLADQSKEAEIK------------ 59
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L ++ ++ + + +I + AG + ++ L +G + +
Sbjct: 60 ---LNRWLTPMSTIFVTSESDIAVRFANAGVSDIRWAQWFMPLKYS----ALFIGQVVVA 112
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G E + + V P + +S++ + RQ I R P +DL+ ICV++
Sbjct: 113 GVCWFFEVSSESWIAIAAGWAMVVIVMPDLVLSSMAKNRQRRISRQMPYLIDLMAICVQT 172
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G++I+ +++ ++ ++ LS + +T + A E Y + VR+
Sbjct: 173 GMTIEASMKYLSIEMKSFDKELSSLLEVTNQRARL-VGMENALEELYRKVPSPEVRSFVM 231
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L QS ++G+SI + L L + R +++E E++ L K+++P+I+F L ++ VI
Sbjct: 232 TLTQSIQHGSSIYNVLTTLAGDIREVQMLELEEEIGKLAAKMSIPLIVFILIPIVFVIAA 291
Query: 317 PAILSII 323
P ++ ++
Sbjct: 292 PGVMRMM 298
>gi|86144313|ref|ZP_01062645.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
gi|85837212|gb|EAQ55324.1| Flp pilus assembly protein TadC [Vibrio sp. MED222]
Length = 288
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 128/313 (40%), Gaps = 29/313 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T + ++ +S+ Y + ++E R + E R
Sbjct: 4 ETVIIWSVIFIISMVLATYCLRFWDNTRADIETRKIIGSTREEKKRA------------- 50
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + +++ KL AAGF S++ ++ ++++V + L L
Sbjct: 51 -------DLFKAILSRISFNK----HETKRKLVAAGFYSDFLADVYYLLKIVPFCVCLAL 99
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + + ++ + P ++S + I P LDL+
Sbjct: 100 IGFDFY----SGDTKTVFALLYLMGALLIFIIGPDSYVSARGKSNIKHISSRLPFLLDLM 155
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+CV +G++I+ +L +A+++ L+ + +T+ + A E FY
Sbjct: 156 NVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVERSRL-VGLEKALEEFYELVPTSE 214
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ ++QS ++G+S+G L L S+ R +M+ E++ +G K+++P+I F + +
Sbjct: 215 SQSFVMTMVQSLQFGSSVGPVLVTLASDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPI 274
Query: 311 ILVIIGPAILSII 323
I++I P I+ +
Sbjct: 275 IILIAAPGIMRAL 287
>gi|167902780|ref|ZP_02489985.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei NCTC 13177]
Length = 270
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 72/266 (27%), Positives = 134/266 (50%), Gaps = 1/266 (0%)
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
D + + R ++ + + +++ + + +L +AGFR +++++ ++LV
Sbjct: 6 APVDDGARSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLV 65
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
V + + ++ +Y LRV + +G P + ++ +RQ +I
Sbjct: 66 VGACAGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAY 124
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDALDLL+IC +G S+ A+RRVA ++ PL++E + EL + A
Sbjct: 125 LPDALDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAM 184
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM
Sbjct: 185 AARIGLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPM 244
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
++F +P + L+ GPA++ +I
Sbjct: 245 MLFVMPTVALIAAGPAVIRLIAVFHK 270
>gi|284991838|ref|YP_003410392.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065083|gb|ADB76021.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 295
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 9/281 (3%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
++ + + +L + +S L + AAG
Sbjct: 23 ALLARPQDAAARTRANLTRGLDLPGAAPARPRSRLLPGLVRALTPAGTVARLNRLAGAAG 82
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
E+ + L+ +LV+ + G + P L V + + V + P +
Sbjct: 83 RPGEWPVPRLVAAKLVLAAVAA------ALGGLVVTAGPGPLTVLMAVGVTGVAYVVPEL 136
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + Q+RQ +I D LD + I VE+G+ + A+ R + G PL+EE++ T+
Sbjct: 137 LLYSRGQERQQAIALELADTLDQMTIAVEAGLGFEAAMARAGRNGRG---PLAEELVRTL 193
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+++ R+ A+ RT + +R +A++Q+D YG SI D LR +E R +R
Sbjct: 194 QDIAVGQPRREAYLALAERTAVPDLRRFIRAVVQADAYGVSIADVLRTQAAEMRLKRRQR 253
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
AE+KA + K+ P+I+ LP L +V++GPA+L I
Sbjct: 254 AEEKAMQIPVKVIFPLILCILPTLFIVLLGPAVLDIAAAFG 294
>gi|307318084|ref|ZP_07597520.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
gi|306896125|gb|EFN26875.1| Type II secretion system F domain protein [Sinorhizobium meliloti
AK83]
Length = 333
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/319 (16%), Positives = 114/319 (35%), Gaps = 19/319 (5%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
AT L + + + I +++ + + ER R + S ++
Sbjct: 1 MATSLLFPVFVFLLASTSIGGMMVAAFYPRVSKASAYRQRFERISARAEDKRSEPAETDG 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R K+LR +K A + +LR +G FL+
Sbjct: 61 RDRRRSVEKTLREIEEKRQANARKGKVTLSARLRQSGLHWSRKAY------------FLV 108
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + +L + +V G P ++++ R + +P+A+D+
Sbjct: 109 CAGAALATWVVMLLLLGLGPLVSVGFAIAGGLLLPHLYVNMKRNARFTRFAAEFPNAVDV 168
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ +++G+ + LR +A P+ E L + + + A + R +
Sbjct: 169 IVRGLKAGLPMPDCLRVIA---MEAQEPVKGEFLAIVQDQTLGIPVDEAVKRMSERMPLA 225
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ R G S+ ++L L R + M+ + KA S K + II LP
Sbjct: 226 EANFFAIVVAIQSRTGGSLSEALGNLSKVLRERKKMKGKIKAMSSEAKSSAG-IIGALPF 284
Query: 310 LI---LVIIGPAILSIIDT 325
L+ + + P ++++ T
Sbjct: 285 LVAGAVYFMSPDYMALLFT 303
>gi|86147189|ref|ZP_01065505.1| bipartite nuclear localization signal containing protein, TadC-like
protein [Vibrio sp. MED222]
gi|85835073|gb|EAQ53215.1| bipartite nuclear localization signal containing protein, TadC-like
protein [Vibrio sp. MED222]
Length = 301
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/307 (16%), Positives = 126/307 (41%), Gaps = 20/307 (6%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + + + + + R+ ++A + + + ++
Sbjct: 12 LFFAWAGVAFGLLLIFYWLVVCTQKKHRIAALAKHHRLADQSKEAEIK------------ 59
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L ++ ++ + + +I + AG + ++ I ++ +
Sbjct: 60 ---LNRWLTPMSTIFVTSESDITVRFANAGVSDIRWAQWFMPLKYSALFIGQVVVAGVCW 116
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
E + + V P + +S++ + RQ I R P +DL+ ICV++
Sbjct: 117 FI----EVSSESWIAIAAGWAMVVIVMPDLVLSSMAKNRQRRISRQMPYLIDLMAICVQT 172
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G++I+ +++ ++ ++ LS + +T + A E Y + VR+
Sbjct: 173 GMTIEASMKYLSIEMKSFDKELSSLLEVTNQRARL-VGMENALEELYRKVPSPEVRSFVM 231
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L QS ++G+SI + L L + R +++E E++ L K+++P+I+F L ++ VI
Sbjct: 232 TLTQSIQHGSSIYNVLTTLAGDIREVQMLELEEEIGKLAAKMSIPLIVFILIPIVFVIAA 291
Query: 317 PAILSII 323
P ++ ++
Sbjct: 292 PGVMRMM 298
>gi|92116009|ref|YP_575738.1| type II secretion system protein [Nitrobacter hamburgensis X14]
gi|91798903|gb|ABE61278.1| type II secretion system protein [Nitrobacter hamburgensis X14]
Length = 324
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/319 (17%), Positives = 122/319 (38%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ LA+A A ++ + + + P+L + R + Q D A
Sbjct: 1 MNLQTLAMAFMAATAVGGVAWVFLYPALSGEAKAE------KRRSAFARTAPAVRQVDRA 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + SLR ++ + + + +++ AG +S L+V + +
Sbjct: 55 QRSRREQIEGSLREIEQRQKRDSKI---TLNDRIAQAGL--SWSKEKFLIVSGIFGAVCF 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + AV L GF P + L +R+ + RA PDA+D
Sbjct: 110 AVPMF-----------SGAGPIAAVGLAFAAGFGLPRWLLGFLKTRREKAFLRALPDAVD 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ +++G+ + ++++ VA PL E I + A Y R +
Sbjct: 159 VIVRGIKAGLPLFESIKVVA---ADSPEPLKSEFAAIIETQAIGMPLGEACARLYERMPV 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M + +A S+ K + +I P
Sbjct: 216 PEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAAIIGSLPP 275
Query: 309 VLILV--IIGPAILSIIDT 325
V++++ + P ++++ T
Sbjct: 276 VVMMLVYLTTPDYIAMLWT 294
>gi|127511576|ref|YP_001092773.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636871|gb|ABO22514.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 287
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 9/231 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + KL+ +G + +R++ + L L +I D + ++L
Sbjct: 66 ERVSKKLQVSGLSYIMTAEQYFAIRILSTLFSLGLTLICSAMLDAYVPQ-------YLLL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G+ P + +++L +KRQ I ++ P LD L + +E+G+++ AL + E G +
Sbjct: 119 AAVFGYFLPVMTLNDLRKKRQGLIVKSLPVYLDYLTMSIEAGLNMTGALSQAVE--RGPA 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E I ++ +R AF N +R Q+ V + AL Q++R G S+G +LR+
Sbjct: 177 GPLRIEFEKVIRDMRAGMSRAQAFRNMADRVQVTEVNSLVSALAQAERTGASLGQTLRIQ 236
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R ER AEKKA KL P+I+F PV +++ P + + +
Sbjct: 237 SDQRRIERFQRAEKKALEAPVKLVFPLIVFIFPVTFMILAFPIAMKFMYEL 287
>gi|269105136|ref|ZP_06157830.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae CIP
102761]
gi|268160586|gb|EEZ39085.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae CIP
102761]
Length = 293
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 50/247 (20%), Positives = 109/247 (44%), Gaps = 6/247 (2%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
SL K L + I K +AGF + + ++ ++ +I +
Sbjct: 52 SLEELKKYLPSALSADVKEIDKKFYSAGFYDFKYAYLYMPIKYLLVLIGSG-----SIYW 106
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + + + P + ++ + + I P LDLL +CV++G+
Sbjct: 107 FSKGIFDNPTMMAIICVWVVLCISMPDIVLAQKSKTLRHKISGQLPYLLDLLAMCVQTGM 166
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+I+ ++ ++ ++ G LS + T + A + Y R + +R+ +
Sbjct: 167 TIESSMSYLSREMKGFDRDLSHLLTRTNDRARI-IGLEQALDELYIRVPTNEMRSFVMTI 225
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
QS +YG+SI + L L ++ R R++ E+K L K+++P+I+F L ++++I P
Sbjct: 226 KQSLQYGSSIYNILTTLAADIRDMRMLTLEEKIGKLAAKMSIPLILFILIPIVILIAAPG 285
Query: 319 ILSIIDT 325
+L ++
Sbjct: 286 VLRMLQN 292
>gi|319795559|ref|YP_004157199.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598022|gb|ADU39088.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 295
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/316 (19%), Positives = 129/316 (40%), Gaps = 23/316 (7%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ + +AI + +I + + SL + + T +
Sbjct: 1 MRSLILLAIIFLCATVGVILLLYMISLIRKA---------------KPSERTHMDPLPRM 45
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
RL L+ V ++ ++LV +L+ AG + V++V ++
Sbjct: 46 LRLVWPVVNILQFHVSEIAPTSMLVKR--KRQLQLAGLEFVLKAEEFIAVQVVSLVVVAA 103
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG+ + +V ++ +G+ P +W+ + +KR+ +I R P LD+
Sbjct: 104 LGLWTAGLLGAMAG----TKVWVTLMSCAMGWYYPVMWMRDRRKKREKNILRTLPGYLDM 159
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +C ++G+S+ A+ + + G L E + E+ +R A R
Sbjct: 160 ITLCCQAGLSLTGAIAQAVQKGPG--GALGIEFDRMMREMRTGVSRMDALNAMAERLDNK 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+++ L Q++ G S+ D+L + + R+ER AEK A K+ P++IF PV
Sbjct: 218 HIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQHAEKLAMEAPVKMIGPLVIFIFPV 277
Query: 310 LILVIIGPAILSIIDT 325
++I P ++ + T
Sbjct: 278 TFIIIFFPLVMQFLQT 293
>gi|258515694|ref|YP_003191916.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
gi|257779399|gb|ACV63293.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
Length = 294
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 118/282 (41%), Gaps = 14/282 (4%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAA 105
V E R ++ + ++++ L K +K L ++ E + LR A
Sbjct: 24 VKRREEKKRLEEYLQISEENSEENLSLSLQKIKAGVIKLFRPLLPSVTTLEKMEFNLRRA 83
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
+ + + +RL + + +L I+ F + G + F P+
Sbjct: 84 N--CKITAEEIYTLRLTLSVGAAVLTGIFYFP-------AIDKILLYGGATGGLFFLLPT 134
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+I+ ++ RQ + D +DLL +++G+ + ++ RV + + G L+EE
Sbjct: 135 KYINMKIRARQKRAQLEILDFIDLLTNGIDAGLDLSTSIDRVTKHMPGI---LAEEFQYA 191
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E+ R A +N R + V A+IQ++R G I L+ + + +
Sbjct: 192 FVEIELGRRRSEALKNMAQRLDIKDVNLLVDAIIQAERTGVPIAKVLKDQANRIKQDFRT 251
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A K A + K+ PMI+F LP L +V++GP + I MK
Sbjct: 252 NALKMAQAASIKMLAPMILFILPALFIVVLGPPFIGIGQLMK 293
>gi|39936744|ref|NP_949020.1| type II secretion system protein [Rhodopseudomonas palustris
CGA009]
gi|39650600|emb|CAE29123.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 324
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 59/321 (18%), Positives = 122/321 (38%), Gaps = 31/321 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+ A+++ + + V P L +E+R+ VA +R+ T
Sbjct: 1 MEMQTLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQR---- 56
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + S++ + + + + KL AG +++ VV + I
Sbjct: 57 ---SRREQIEGSIKEIETRNEKQK---NVPLTAKLSQAGL--DWTPGKFGVVSASLGIFM 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + II F G P + L ++R+ A PDA+
Sbjct: 109 LGIAIILGASLPAAAGLGFAAGFGL-----------PRWTLGYLKRRREKKFLAALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + +++ VA PL E I + A Y R
Sbjct: 158 DIIVRGIKAGLPLFDSIKMVA---ADSPEPLRSEFNAIIETQAIGMPIGEACARLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + +A S+ K + II L
Sbjct: 215 IPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAA-IIGSL 273
Query: 308 PVLILVIIG---PAILSIIDT 325
P+++++++ P +S++ T
Sbjct: 274 PIIVMMLVYVTTPDYISLLWT 294
>gi|149186258|ref|ZP_01864572.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
gi|148830289|gb|EDL48726.1| hypothetical protein ED21_31014 [Erythrobacter sp. SD-21]
Length = 323
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 51/320 (15%), Positives = 115/320 (35%), Gaps = 30/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ +L + + + +L + ++R++ V ++ S K +
Sbjct: 1 MNMIQLVLVAGGLLVLATLGVSAFAGPSAGKASQRRLQQVRYRHSESTDAKVESQLKKAI 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+SR + ++ + E + +L G +SL+ L V +
Sbjct: 61 ASRKPKQFKQA----------GSGSRLEALAVRLDRTG--KGWSLSQYAYASLGVGMAVA 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + ++ L + G P + ++KR + + DA++
Sbjct: 109 VILFLRSGSLP-----------LSLALGTFAGAGIPHFVVGRAIKKRTNQFNVKFADAIE 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL+ + SG+ + + L V+++I G P+ EE + + + + + +R +
Sbjct: 158 LLVRGLRSGLPVTETLNVVSQEIPG---PVGEEFKSIVERIKIGRTMEESLQETADRLGI 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
L G ++ ++L L R M+ + KA S K + I+ LP
Sbjct: 215 PEFNFFCITLAIQRETGGNLAETLSNLADVLRKRTQMKLKIKAMSSESKASA-YIVGSLP 273
Query: 309 VLI---LVIIGPAILSIIDT 325
++ + I P L T
Sbjct: 274 FIVFGLIFWINPEYLGGFFT 293
>gi|121534350|ref|ZP_01666174.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307120|gb|EAX48038.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 308
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 69/318 (21%), Positives = 135/318 (42%), Gaps = 12/318 (3%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + + + V++F L+Y ++ + + G + R+K++ + I
Sbjct: 1 MLMLIVVLSFVTVFLLVYLLLAANALAQGNIAMRLKALNT--MTAGRSDIDQELARPFKE 58
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R+ + + + +A+ + K+ AAG + + L++ +F +
Sbjct: 59 RVLSPLRSDFAAALSRFTPRALRR--AVEEKMAAAGGFGSLTPDEFLLLSG----LFAVA 112
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
L VG + P ++ + R+ SI++ PD LDLL
Sbjct: 113 APAVAATLAALTGAAAHQIVGLSFMAFASALLLPFFLLNRKIAMRKRSIQKDLPDVLDLL 172
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ VE+G+ D AL +++E + G L +E + E+ R+ A R +
Sbjct: 173 TVSVEAGLGFDGALAKLSEKMKGA---LVDEFTRALQEMRMGVPRREALRAMGLRCDVPD 229
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ T +LIQ+D+ G SIG LRV + R +R ++ A K+ +P++ F P +
Sbjct: 230 LSLFTTSLIQADQLGVSIGQVLRVQSASMREKRRQRTQELAMKAPVKMLLPLVFFIFPAI 289
Query: 311 ILVIIGPAILSIIDTMKD 328
+V++GPAI+ I T
Sbjct: 290 FVVVLGPAIIQIFLTFSQ 307
>gi|312621086|ref|YP_003993814.1| type ii/iv secretion system protein tadc,associated with flp pilus
assembly [Photobacterium damselae subsp. damselae]
gi|311872807|emb|CBX86898.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Photobacterium damselae subsp. damselae]
Length = 303
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 109/246 (44%), Gaps = 6/246 (2%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
SL K L + I K +AGF + + ++ ++ +I +
Sbjct: 62 SLEELKKYLPSALSADVKEIDKKFYSAGFYDFKYAYLYMPIKYLLVLIGSG-----SIYW 116
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + + + P + ++ + + I P LDLL +CV++G+
Sbjct: 117 FSKGIFDNPTMMAIICVWVVLCISMPDIVLAQKSKTLRHKISGQLPYLLDLLAMCVQTGM 176
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+I+ ++ ++ ++ G LS + T + A + Y R + +R+ +
Sbjct: 177 TIESSMSYLSREMKGFDRDLSHLLTRTNDRARI-IGLEQALDELYIRVPTNEMRSFVMTI 235
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
QS +YG+SI + L L ++ R R++ E+K L K+++P+I+F L ++++I P
Sbjct: 236 KQSLQYGSSIYNILTTLAADIRDMRMLTLEEKIGKLAAKMSIPLILFILIPIVILIAAPG 295
Query: 319 ILSIID 324
+L ++
Sbjct: 296 VLRMLQ 301
>gi|222147178|ref|YP_002548135.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734168|gb|ACM35131.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 334
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/300 (17%), Positives = 110/300 (36%), Gaps = 20/300 (6%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
+ + R+ V K+Q+ + S R ++ K+
Sbjct: 22 VLLFSRVQADKKTATRLARVKNAEADTAKKQVARDRVQELSKRRKSVQDTLKEIERKQNE 81
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+ +++ +L G + SL + + ++F L + L
Sbjct: 82 KNKKISSQSLKQRLGQTGL--DVSLIQFSIASTTLGLVFFCLCFVLGMSLFVSLG----- 134
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ G P +S L+++RQ +P+ALD+++ ++SG+ ++ ALR +A
Sbjct: 135 ------IAFTAGAGLPRWIVSFLIRRRQEKFLTEFPNALDVMVRSIKSGLPLNDALRMIA 188
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
P+ E + A +N + V + + G ++
Sbjct: 189 ---VDAQEPVKTEFRRVVDAQQLGITVPEACGRMFNSMPLQEVSFFAIVIAIQSQAGGNL 245
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
++L L R R M+A+ A S+ K + +II LP ++ ++ PA + ++ T
Sbjct: 246 SEALSNLSKVLRERRKMKAKVSALSMEAKASA-VIIGALPFIVAFLVYISSPAYIMVLFT 304
>gi|170725110|ref|YP_001759136.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810457|gb|ACA85041.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 287
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 9/231 (3%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I KL+ +G + +R++ + + L I D + + +IL
Sbjct: 66 ERISKKLQISGVSYMMTAEQYFAIRILSTLFAVGLATICGLLLDD-------ISIKYLIL 118
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G G+ P + +++L +KRQ+ I ++ P LD L + +E+G+++ A+ + E G S
Sbjct: 119 AGLFGYILPVITLNDLRKKRQALIVKSLPVYLDYLTMSIEAGLNMTGAISQAVE--RGPS 176
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E I ++ +R +F N R Q+ + + AL Q+++ G S+G +LRV
Sbjct: 177 GPLRIEFEKVIRDMRAGMSRAQSFRNMAERVQITEINSLVSALAQAEKTGASLGQTLRVQ 236
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R ER AEKKA KL P+I+F PV +++ P + + +
Sbjct: 237 SDQRRIERFQRAEKKALEAPVKLVFPLIVFIFPVTFMILAFPIAMKFMYEL 287
>gi|264680614|ref|YP_003280524.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262211130|gb|ACY35228.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 317
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 9/315 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ +++ +LI A VI E ++ A+ R + A
Sbjct: 7 YLMLSIALLAVAALIGAAVIAYTHQRRERSSQVVRDALSRSGAAAANEAATPARPADLLR 66
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
L +L LV + L G+ S + L+ R ++ ++F +L
Sbjct: 67 SLNGDGELPAHWLNTSLGKALVAQEDRILLSKCGWGSTRAQLQYLIARCLISVLFSLLAA 126
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
G + + + +GF P + ++ ++R++ + R P +DLL +
Sbjct: 127 FVFLGSKQF--------LLYLFAAFTIGFLLPKWVLRSVARRRRACVARELPLFVDLLGL 178
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+G+S+DQ L+ + D G LS E+ L + S R+ +F Q D +
Sbjct: 179 LQGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGSTRERSFGRMSEVYQNDNLA 238
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
N T +IQ DRYG ++ + LR+ R +R + ++ + K+T M++ LP LI+
Sbjct: 239 NLTSLMIQIDRYGGAVQEPLRIFGERLREQRKAKMKELIGKISVKMTAVMVVTLLPALII 298
Query: 313 VIIGPAILSIIDTMK 327
+ GP L++I +
Sbjct: 299 ITAGPGFLAVIRALG 313
>gi|160897511|ref|YP_001563093.1| type II secretion system protein [Delftia acidovorans SPH-1]
gi|160363095|gb|ABX34708.1| type II secretion system protein [Delftia acidovorans SPH-1]
Length = 334
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/335 (16%), Positives = 128/335 (38%), Gaps = 24/335 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYA--VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+L +A + ++ +++A +V S ++ + R+ + +
Sbjct: 1 MTPQQLWIASISLGALGLVLWACALVWKLWRSARASSQVARILQARDTASTPKAATKSAM 60
Query: 67 SASSRLRTRDSKSLRNFVK---------------KLNLKAILVDENIVNKLRAAGFRSEY 111
A+ + + L+ + L AG +
Sbjct: 61 QANDAQLLNPLSINVRSSDSPQAVAANLPPPAWLQWGVAKALLADEDRKLLDQAGVGTRN 120
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ R+V+ ++ +L + + + + L +G P ++ +
Sbjct: 121 GSMAYVASRMVLCVVLPLLALGVLRPGEN-------AALMYGFLGVSLGLMLPKWFLRSR 173
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ R+ + P +DLL + G+S+DQ+L+ +A + +S E+ L +
Sbjct: 174 AKGRREQVVEELPLFVDLLRLLQGVGLSVDQSLQILASEFKSVLRVISGELALANQLYNT 233
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
R+ +F+ N + D + L+Q D++G ++ + LR R +R ++K
Sbjct: 234 GRTREQSFQRMVNMSADDDMSAIVNLLVQVDKHGGAVQEPLREFSIRLREKRQASFKEKI 293
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S+ K+T M++ LP L+++ GP L++I +
Sbjct: 294 GSITVKMTGVMVLTLLPALLVITAGPGFLAVIRAL 328
>gi|258620798|ref|ZP_05715833.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|258624768|ref|ZP_05719699.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|262173889|ref|ZP_06041566.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
gi|258582930|gb|EEW07748.1| Flp pilus assembly protein TadC [Vibrio mimicus VM603]
gi|258586996|gb|EEW11710.1| Flp pilus assembly protein TadC [Vibrio mimicus VM573]
gi|261891247|gb|EEY37234.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus MB-451]
Length = 291
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 62/278 (22%), Positives = 118/278 (42%), Gaps = 5/278 (1%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
S+ + LR T + TR+ K+ FV L + KL AG
Sbjct: 17 SLVITHFALRSWDRTKATISTRKIIGSTREEKNRFEFVYSLLNMVSFNQDETKKKLVKAG 76
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+++ + +++ P I F K E + + ++ +G P +
Sbjct: 77 IYNQFIARSYYLFKII-PFGLCAFFSILAFLSGKTDETMLVVSLAIGAIVFLLG---PDM 132
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+I+ +K I P LDL+ +CV +G++I+ L +A ++ L+ + T+
Sbjct: 133 YIAARGKKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTV 192
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A FY+ ++ + QS +YG+SIG L L S+ R +M+
Sbjct: 193 ERSKL-VGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMD 251
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
E+K +G K+++P+I F + +I++I P I+ +
Sbjct: 252 LEEKIGKMGAKMSIPLIAFIMVPIIILIAAPGIMRMFS 289
>gi|227823975|ref|YP_002827948.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227342977|gb|ACP27195.1| putative type II/IV secretion system protein TadB, Flp pilus
assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 336
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 54/299 (18%), Positives = 110/299 (36%), Gaps = 21/299 (7%)
Query: 30 AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL 89
+ + E R++ V+ E R + + + + S+ R SL+ KK
Sbjct: 26 VLYSRIENDKKAEGRLRRVSAA-ETDRAKIKAARDRVNEMSKRRKSLQDSLKELEKKQQE 84
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K+ ++ +L A S V ++ + LI+ +I G
Sbjct: 85 KSANAAPSMKKRLVQANL--SISPAQFYVFSVIFGLFALIVVLIAGAGLWIAGGVALITA 142
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
G P + +V++R +P+ALD+++ ++SG+ ++ ALR +A
Sbjct: 143 AG-----------LPRWLVGAMVKRRCKKFLDEFPNALDVMVRSIKSGLPLNDALRLIAS 191
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
P+ E + N A + V + + G ++
Sbjct: 192 ---DGQEPVKTEFRRVVESQQVGLNVPDACARMIQSIPLPEVNFFAIVIAIQAQAGGNLS 248
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
++L L R + M+A+ A S+ K + II LP ++ ++ P + ++ T
Sbjct: 249 EALGNLSKVLRERKKMKAKVGALSMEAKASA-CIIGALPFIVATLVYLTSPEYMMVLFT 306
>gi|13475422|ref|NP_106986.1| hypothetical protein mlr6486 [Mesorhizobium loti MAFF303099]
gi|14026174|dbj|BAB52772.1| mlr6486 [Mesorhizobium loti MAFF303099]
Length = 305
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/253 (20%), Positives = 107/253 (42%), Gaps = 2/253 (0%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
L + + R + + + + L + + KL AGF +
Sbjct: 35 LAEGITNRRSLHAQQELNRISAQRPVDAYFRGLEKERG-EPNALEAKLFRAGFYQTSAPV 93
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
I + RL I + + + P + LIG PS+ + +
Sbjct: 94 IYTLSRLGAVCIGFLACYAVLSRVLP-PQLPGFVAFAGSALIGLGCLVIPSIALDRFESR 152
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
++ +R +PD +D+++ C ++G+S++ A+ RV ++ G L ++ + +L
Sbjct: 153 QKQVYRRGFPDFMDMMITCADAGMSLEAAVERVGAELAGTHKWLGIQLSIVTLQLRAGKP 212
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A +R +D R QS+ GTS+ D+LR+ E R++R+M AE++A +L
Sbjct: 213 LREALRELADRIGLDEARALAVLFRQSEELGTSLTDALRIYSDEMRTQRIMNAEERANAL 272
Query: 295 GPKLTVPMIIFFL 307
K+ +P+ +
Sbjct: 273 PVKMMIPLGLCIF 285
>gi|84494453|ref|ZP_00993572.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
gi|84383946|gb|EAP99826.1| hypothetical protein JNB_06644 [Janibacter sp. HTCC2649]
Length = 310
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 109/319 (34%), Gaps = 10/319 (3%)
Query: 9 FDATELAVAITTAV-SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ + AI + + L+ +P L R+ + + Q
Sbjct: 1 MNDLARSGAILGFLTGVGLLLAWFGLPRHRQAGLADRVLPYLRDTPRPSNLLAANAQTRG 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A L L V+++ + ++ +L AG + ++ +++ +
Sbjct: 61 AIGTLFAPIVGELSGHVERV----MGGTASVRRRLLRAGLAPD--VDKFRAQQVIWGVGG 114
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + L V + G A V++S +R+ + +P
Sbjct: 115 GLGMLAVGTLSAVTRGSSPVLVVLLTAIGIASGVVAADVFLSRRANQREERMLAEFPTVA 174
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+LL + V +G AL RV G LS+E+ + + + VA +RT
Sbjct: 175 ELLALAVGAGEGAVGALERVCRLSRG---ELSDELRRCLGDARAGASLPVALHGLADRTG 231
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + ++ + GT + D LR + R E + + +P++ L
Sbjct: 232 LMSLTRFVDGIVIAVERGTPLADVLRAQAQDVREEGRRAIMEAGGKKEIAMMIPVVFLVL 291
Query: 308 PVLILVIIGPAILSIIDTM 326
P+ +L I P + TM
Sbjct: 292 PITVLFAIFPGFSFLNFTM 310
>gi|91775991|ref|YP_545747.1| type II secretion system protein [Methylobacillus flagellatus KT]
gi|91709978|gb|ABE49906.1| type II secretion system protein [Methylobacillus flagellatus KT]
Length = 300
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 50/310 (16%), Positives = 124/310 (40%), Gaps = 15/310 (4%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+S+ L+ V+ + R + A EI +++ +L ++
Sbjct: 5 VVISVLGLLAGSVLLLVAEFSKSIRYDAHARFDEIFGRKRRLNLP----------SPARG 54
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ + +++L++ D I+ L AG++ + + V+R I +L + +
Sbjct: 55 IEHVIERLSILPSSKDPEILKLLVQAGYKGKARVVFNAVIR-----IGPVLTAVGTLLVN 109
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ + + + + + + L +R+ I + L +L++ +SG+S
Sbjct: 110 LVQGQDLFHCLASALFGFALFYVGIRYLLRWLAARRRKMISKEITTFLYMLVMLFDSGLS 169
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
++ +LR + E L++E+ +A + ++ A + + + A L
Sbjct: 170 LEHSLRIMVEQASDIMPHLAQELERVLARIRAGQDQGKALMSMSQMLDIPELSEAVAMLK 229
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
Q + G ++ DS+ + + ++ + L K+T+ M+IF P L++ I GP
Sbjct: 230 QVAQQGGNVRDSIMRYAALIEERQFSHLRERVSKLSAKMTIVMMIFMFPALMIFIAGPGF 289
Query: 320 LSIIDTMKDH 329
+ + +
Sbjct: 290 IGLGKALSGQ 299
>gi|309792339|ref|ZP_07686809.1| type II secretion system protein [Oscillochloris trichoides DG6]
gi|308225654|gb|EFO79412.1| type II secretion system protein [Oscillochloris trichoides DG6]
Length = 309
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 71/316 (22%), Positives = 141/316 (44%), Gaps = 14/316 (4%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + +++ ++ +V+ E+ +R+ + L + ++ D
Sbjct: 7 PTMLILGVVGIAVIGVVIFLVLRMRKPDEISERLNTFTERELTLEELELQQPIMDRIFIP 66
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+L + K + E + L+ AG + + + +R+ + ++ +
Sbjct: 67 AAKAMLATLGKYGAKQS------AERLRTNLQQAGNPGGITPTMFVGLRVGLALVLGL-- 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ L + ++ +G+ P W+ ++KR+ SI +A PDALDLL
Sbjct: 119 ---LITVITLRSMELSQALLYSMIGFVLGYMLPVTWLGQQIKKRKKSITKALPDALDLLC 175
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
I VE+G++ D AL+RV + LS E ++++ R+ A ++ RT +D V
Sbjct: 176 ISVEAGLAFDLALQRVTQKWDD---ELSREFKKVLSDIRLGRTRREALKDLGVRTGVDDV 232
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ T A+IQ+D+ G S+ LR+ + R R AE+ A K+ PM+ P L
Sbjct: 233 QTFTAAVIQADQLGVSMSKILRLQSDQMRQRRRQRAEEAAQQAPIKMLFPMVFLIFPALF 292
Query: 312 LVIIGPAILSIIDTMK 327
+VI+GPA+ I+++
Sbjct: 293 VVILGPAVPRIMESFG 308
>gi|192292570|ref|YP_001993175.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
gi|192286319|gb|ACF02700.1| type II secretion system protein [Rhodopseudomonas palustris TIE-1]
Length = 324
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 60/321 (18%), Positives = 122/321 (38%), Gaps = 31/321 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+ A+++ + + V P L +E+R+ VA +R+ T
Sbjct: 1 MEMQTLALGFFAAIAVGGVAWVFVYPLLSGEKTVEQRLTFVARSTPTVRQADRTQR---- 56
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + SL+ + + + + KL AG +++ VV + I
Sbjct: 57 ---SRREQIEGSLKEIETRNEKQK---NVPLTAKLSQAGL--DWTPGKFGVVSASLGIFM 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + II F G P + L ++R+ A PDA+
Sbjct: 109 LGIAIILGASLPAAAGLGFAAGFGL-----------PRWTLGYLKRRREKRFLAALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + +++ VA PL E I + A Y R
Sbjct: 158 DIIVRGIKAGLPLFDSIKMVA---ADSPEPLRSEFNAIIETQAIGMPIGEACARLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + +A S+ K + II L
Sbjct: 215 IPEANFFGIVISIQQKSGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAA-IIGSL 273
Query: 308 PVLILVIIG---PAILSIIDT 325
P+++++++ P +S++ T
Sbjct: 274 PIIVMMLVYVTTPDYISLLWT 294
>gi|227818620|ref|YP_002822591.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|36958876|gb|AAQ87301.1| TadB-like protein involved in pilus formation and/or protein
secretion [Sinorhizobium fredii NGR234]
gi|227337619|gb|ACP21838.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 332
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 106/314 (33%), Gaps = 20/314 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ S + +++ + ++ ER Q + D + R R+
Sbjct: 6 LFPVLIFFLASSFVGGLMLAAFYPRTVKASAYRQRFERVAGHTQINRTGSADESRDRRRS 65
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ + +LR AG +S V + +L +
Sbjct: 66 VEKTLRDIEEQQKAHVRKGRKPKLEARLRQAGL--GWSTRAYWVACAGTGLAIYVLVALL 123
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G A+ G P ++ +R +P+A+D+++ +
Sbjct: 124 GLG-----------AFAALGFATAGGLYLPHFHVNTTRNRRLKRFTAEFPNAVDVIVRGL 172
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+ + LR +A P+ E L + + A E R + R
Sbjct: 173 KAGLPMTDCLRVIA---AEAQEPVKGEFLTIAHDQTLGLPVDEAVERLCERMPLPEARFF 229
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI--- 311
+ R G S+ ++L L R + M+A+ KA S K + II LP +
Sbjct: 230 AIVITIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSAEAKSSAG-IIGALPFFVAGA 288
Query: 312 LVIIGPAILSIIDT 325
+ + P +S++ T
Sbjct: 289 VYLTSPDYMSLLFT 302
>gi|86360589|ref|YP_472477.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
gi|86284691|gb|ABC93750.1| putative tadC pilus assembly protein [Rhizobium etli CFN 42]
Length = 314
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 67/303 (22%), Positives = 141/303 (46%), Gaps = 5/303 (1%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ-KDSASSRLRTRDSKSLRNF 83
+ +AV+I + + EL R + V+V Q D+ + L +++ +R +
Sbjct: 9 LIVFFAVLIFTAAASELFFRQREVSVRVLKSSAAAREEFQLGDTTIADLGEAENRLIRRY 68
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + + N+L AG+ + ++ VVR V+ I L+ + + +
Sbjct: 69 FE--ITRRDTNVNSTQNRLIRAGYFAAGAVTTFQVVRAVICIGMLVAAVWAVNRIAPAMS 126
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + F +++I ++ +R +PD +D+L++C+++G+SI+ A
Sbjct: 127 Q--MAALIIAMFAAGATFILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAA 184
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
RVA + + + + + E+ + A N R ++D R + QS+
Sbjct: 185 ANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARALSVLFRQSEE 244
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
GTS+ +LRV +E R R++ AE+KA +L K+ +P+ F PV +L+++ P I+ ++
Sbjct: 245 LGTSVTQTLRVYSNEMRDLRVVRAEEKANALPVKMLLPLGAFLFPVSLLIVLVPIIMRVV 304
Query: 324 DTM 326
+
Sbjct: 305 SLL 307
>gi|309778765|ref|ZP_07673538.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308922473|gb|EFP68097.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 329
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/333 (15%), Positives = 121/333 (36%), Gaps = 21/333 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITS------ 62
D T + +++T A + + + + + + R A+ +
Sbjct: 1 MDETLITLSLTAAAAAVLVFGGLALRATLTRHRSARKLDTALSDMRATAANPAAPAASPV 60
Query: 63 -------LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
S ++ + + L +V E L G+ E++ +
Sbjct: 61 VPPAARPRPHGSREAQQLQQQIAKVGQRWIDTGLGRRIVTEEDRKLLEECGYYGEHARTV 120
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
R+++P + + G + + +G+ AP + + R
Sbjct: 121 FGGTRILLPPLLAVFGAL--------HASSVLFVFVFGFVGFALGYLAPKWLLGRRKESR 172
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ + P +D+L + G+SIDQ+L+ +A + G L+ E + + R
Sbjct: 173 RRRMDDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLAGEFGRANQQFASGRPR 232
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + ++ L Q DR+G ++ + LR + R +++ L
Sbjct: 233 EQTLLRIARLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGGRLQENRRARLKERVGKLT 292
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++T+ M++ LP L+++ GP + ++ +++
Sbjct: 293 VQMTMIMVMTLLPALLIITAGPGFMGVMRSLQQ 325
>gi|148976302|ref|ZP_01813026.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
gi|145964396|gb|EDK29651.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
Length = 283
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 6/237 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
E+ KL G S + LV+R + I ++ + + +
Sbjct: 51 GFQGQESRRRKLTLIGLGSPNAETYFLVIRFTLMTIGAMI------WHMTQISESDVYSI 104
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
I I V + V + I R PDA+DL++ICV SG++++ R V E+
Sbjct: 105 AECIAIAIVTGILIDRILDWWVNQVLMQISRVVPDAIDLMVICVASGLTLESVFRCVGEE 164
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ S LS E LLT E+S L + Q A N R Q+ + N + Q+ +YGT + D
Sbjct: 165 MRSISPALSREWLLTATEISVLDSPQTALNNLDKRVQLPDINNVVTTMNQALQYGTPLAD 224
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+L+++ S++R +E E+ + K++ P+++F + ++ +II P +L+++ T+
Sbjct: 225 ALKLIASDSRQYYFLELEEWVGKIPAKMSFPLVVFIMLPVVAIIIAPIMLNLMQTLG 281
>gi|148655424|ref|YP_001275629.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567534|gb|ABQ89679.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 327
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/320 (11%), Positives = 109/320 (34%), Gaps = 32/320 (10%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D T+L + ++I ++ + S + E+R+ A R +++
Sbjct: 6 DPTQLIAPVGIFLAILAVFAFLASRSASNPSYEERLTQFAGRRADQQQRTA--------- 56
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + V + L A + ++ +++ L+
Sbjct: 57 ----KEQLREIDKVVAR-----GKRGSETARNLARADL--KLTVTEFYMIK-------LL 98
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + ++ ++ + I+ + P +++ ++R + D +++
Sbjct: 99 AAGVGAVVGAFIGRASWEAQLLSGIVGFALFSFLPDLYVGYAAKQRVTKFNAQLGDTINM 158
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + SG S+ Q++ V+ P + E + E+ + A +N R +
Sbjct: 159 LANSLRSGYSLLQSMELVSR---EAPEPTASEYRRVVQEVGLGLRTEDALDNLLKRVPSE 215
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
+ A+ G ++ L + R ++ E + +++ +I +
Sbjct: 216 DLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQGRISAYVITGLPIG 275
Query: 308 PVLILVIIGPAILSIIDTMK 327
+ + +I P ++ + +
Sbjct: 276 LAIFITVINPNYMAPMFSFG 295
>gi|116671481|ref|YP_832414.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611590|gb|ABK04314.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 294
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 118/242 (48%), Gaps = 9/242 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L + L AG + + L +L + + ++ L I+ P
Sbjct: 62 GLAPAAYVRKLDRLLSLAGRPAAWPLGRILAAKPALGLVGASLFILISM------SSPKP 115
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ A + + ++G+ P + + + +RQ +++ + LD +LI VE+G+ + A+ R
Sbjct: 116 IIKLAGLFLLFLGYFIPDLLLYSKGMERQKAMQLELANTLDQMLISVEAGLGFEGAMARA 175
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
E+ G PL+EE++ T+ ++ +R+ ++ RT + +R+ QA++Q+D YG +
Sbjct: 176 GENGKG---PLAEEIIRTLQDMQVGRSRRESYLALAERTNIPELRSFVQAIVQADTYGIA 232
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
I LR+ R +R AE+KA L + P++ F PVL + I+GPA+++ + T
Sbjct: 233 ISRVLRIQAKVMRVKRRQRAEEKAMKLPVMILFPLLFFIFPVLFIAILGPAVINTVVTFS 292
Query: 328 DH 329
Sbjct: 293 GQ 294
>gi|220913395|ref|YP_002488704.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860273|gb|ACL40615.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 294
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 9/277 (3%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
+ + +T+L A+ R D K L + L AG +
Sbjct: 27 DRQGRAAVTNLLARGAAPTARATDYKPSVLEGVGRRLTPPTYVAFLDRLLALAGRPASMP 86
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L +L +L + + + G L A + + ++G+ P + + +
Sbjct: 87 LGKVLGTKLALGLAGV------GLGLHLTAIGSTPLMKLAGLFVLFLGYFIPDLLLYSKG 140
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
Q+RQ +++ + LD +LI VE+G+ + A+ A + PL+EE++ T+ ++
Sbjct: 141 QERQKTMQLELANTLDQMLISVEAGLGFEGAM---ARAGDNGNGPLAEELVRTLQDMQVG 197
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+R+ ++ RT + +R+ QA++Q+D YG +I LRV R +R AE+KA
Sbjct: 198 RSRRESYTALAARTSIPELRSFVQAVVQADTYGIAISRVLRVQAKVMRVKRRQRAEEKAM 257
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
L + P++ F PVL + I+GPA+++ + T
Sbjct: 258 KLPVMILFPLLFFIFPVLFIAILGPAVINTVVTFTGQ 294
>gi|220913151|ref|YP_002488460.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860029|gb|ACL40371.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 312
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 55/313 (17%), Positives = 112/313 (35%), Gaps = 10/313 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVERE-ILRKQQITSLQKDSASSRLR 73
+ ++ A ++ + + + + R ++A E L+ Q + S +
Sbjct: 1 MITVSPAAAVCGAVLGIGLWLVIFRSPIMRATTLAQRIEPQLKSQNLESRLLSGEHTLTP 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDE----NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + + + A+ +L AG S+ +++
Sbjct: 61 FGPLERILRPFIRDGIAALGKMSPAPGATARRLAQAGI--NKSVIDFRAEQVIWAAAGFA 118
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + + L A+I G GF W+ V++R+ + +P +L
Sbjct: 119 LTSAIVAVGAAAGRFNALLAAVAIIGSGISGFIVRDYWLGVQVRRREERMMAEFPSLAEL 178
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + V +G S AL RV G LS+E +AE A + F RT +
Sbjct: 179 MALAVGAGESATGALDRVCRSARG---ELSKEFSTILAETRAGKPLVNALQEFSARTDLA 235
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ ++ + GT + D LR + R + + A + VP++ LP+
Sbjct: 236 PLVRFVDGIVVAVERGTPLADVLRAQAQDVRDTAKRDLMEAAGKKEIAMMVPLVFGVLPL 295
Query: 310 LILVIIGPAILSI 322
++ + P I +I
Sbjct: 296 TVVFAVFPGISAI 308
>gi|262164953|ref|ZP_06032691.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
gi|262027333|gb|EEY46000.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio mimicus VM223]
Length = 291
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 5/278 (1%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
S+ + LR T + TR+ K+ FV L + KL +G
Sbjct: 17 SLVITHFALRSWDRTKATISTRKIIGSTREEKNRFEFVYSLLNMVSFNQDETKKKLVKSG 76
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+++ + +++ P I F K E + + ++ +G P +
Sbjct: 77 IYNQFIARSYYLFKII-PFGLCAFFSILAFLSGKTDETMLVVSLAIGAIVFLLG---PDM 132
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+I+ +K I P LDL+ +CV +G++I+ L +A ++ L+ + T+
Sbjct: 133 YIAARGKKITKKISSRLPFLLDLMNVCVHTGMTIEACLEYLAFELRTVDHHLAYVVKKTV 192
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A FY+ ++ + QS +YG+SIG L L S+ R +M+
Sbjct: 193 ERSKL-VGLEKALNEFYDLVPTAEAQSFVMTMTQSLKYGSSIGPVLATLASDIREMNMMD 251
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
E+K +G K+++P+I F + +I++I P I+ +
Sbjct: 252 LEEKIGKMGAKMSIPLIAFIMVPIIILIAAPGIMRMFS 289
>gi|134295599|ref|YP_001119334.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134138756|gb|ABO54499.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 330
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 8/294 (2%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVD 95
LE+RM ++ R Q+ + R L +L +V
Sbjct: 41 DALERRMAALEAARTRTAPDDGAGTQQVARGRERIERMLSRLAAAGMRLLDTGFGKHIVA 100
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E L G+ + + L RLV I +L I G K + +
Sbjct: 101 EEDRRLLEQCGYVDARTRGLFLSARLVCGITVPLLFAILASGRMKGGYWT-----IGMFA 155
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
VGF P +++ R+ S+ P +D+L + G+S+DQ+L+ V D G
Sbjct: 156 AFSVGFMLPKLYVQRRAAARRQSVIDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMM 215
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
LS E+ + + + R + + + + +R + ++Q D++G ++ + L+
Sbjct: 216 PVLSSEVGIAQRQFAAGRTRDQSMQRLSSGFDNEDLRAIARLMVQVDKHGGAVQEPLKQF 275
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
R R + L K+T M++ LP L++V GP +L+++ + H
Sbjct: 276 GDRLRETRRAMLRDRIGRLTVKMTGVMVVTLLPALLIVTAGPGLLAVMRALAVH 329
>gi|150398545|ref|YP_001329012.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150030060|gb|ABR62177.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 336
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/290 (17%), Positives = 109/290 (37%), Gaps = 21/290 (7%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENI 98
+ E R+ V+ E R + + + + S+ R SL+ KK K+ ++
Sbjct: 35 KKTEGRLLRVSAA-ETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANSAPSM 93
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+L A S+ + + + ++ + G G
Sbjct: 94 KKRLLQANL--SISVAQFYLFSALFGLFTFVVVFLAGAGALIAAGVGLTAAAG------- 144
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P + + +++R +P+ALD+++ ++SG+ ++ ALR +A P+
Sbjct: 145 ----LPRWIVGSRIKRRCRKFLDEFPNALDVMVRSIKSGLPLNDALRLIAS---DGQEPV 197
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E + N A + + V + + G ++ ++L L
Sbjct: 198 RTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKV 257
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
R R M+A+ A S+ K + II LP ++ ++ PA ++I+ T
Sbjct: 258 LRERRKMKAKVNALSMEAKASA-CIIGALPFIVATLVYLTSPAYMAILFT 306
>gi|117617658|ref|YP_855996.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559065|gb|ABK36013.1| Flp pilus assembly protein TadC [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 294
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/283 (20%), Positives = 128/283 (45%), Gaps = 4/283 (1%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ + A ++QQ + + R ++ ++ + + L
Sbjct: 16 LAAFAGWHGYRQQQQWLAQSRRYGPPRQGREVARDWLSWCGRGYPVGAREQARLQQLLAQ 75
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG S + + L +L+ + + ++W + + V++ VG P
Sbjct: 76 AGIFSRHGFDRLRAAKLLGGLGGAMAVLLWRLLAAPADGFT----LMWVLVAYVVGAGVP 131
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
W+ +K +++ ++ PDA+DLL+I VE+G+++D+AL RV +G L+ + L
Sbjct: 132 ERWLQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYLGALEPGLARQFLR 191
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T AE+ ++ RT + + L + +YG+ + +++R + E R R
Sbjct: 192 THAEIQMRGDQAGCLARLAWRTGLPELDRLANTLQMAQQYGSPLAETMRTISQEARQMRR 251
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ E++A SL K+T+ + + ++++II P + +I++++
Sbjct: 252 LALEEQAGSLPGKITLIQMALIMLPMLVLIIAPTLNLLINSLR 294
>gi|153833197|ref|ZP_01985864.1| bipartite nuclear localization signal containing protein [Vibrio
harveyi HY01]
gi|156977404|ref|YP_001448310.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
gi|148870468|gb|EDL69383.1| bipartite nuclear localization signal containing protein [Vibrio
harveyi HY01]
gi|156528998|gb|ABU74083.1| hypothetical protein VIBHAR_06191 [Vibrio harveyi ATCC BAA-1116]
Length = 280
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/263 (18%), Positives = 107/263 (40%), Gaps = 9/263 (3%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
T ++ + + +S + + + K+ AG+ +
Sbjct: 23 RTEQRRKKIALYVGGNAHRSPSRVNRFFVRFGKEHRQELEQKMIEAGYYNTEWAKFYFPA 82
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ L+LG++ F + QL V LI + P + +
Sbjct: 83 K------LLVLGLVSGFVLLSDMTQSNQLIVITFTLIAVI--VGPDSLLQMRRKILIRKT 134
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P LD++ +CV++G++I+ AL + +++ L ++ T + A
Sbjct: 135 SAQLPYLLDMMSVCVQTGMTIEAALVYLGKELAEFDSDLCYQIKRTSDSAKI-HGLEKAL 193
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ R +R+ +IQ+ +YGTS+ L L + R +++ E+K L K++
Sbjct: 194 NDLSERIPTPPIRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILTVEEKVGKLSAKMS 253
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
VP+I+F + ++++I+ P I+ +
Sbjct: 254 VPLILFIMFPIVILILAPGIMQM 276
>gi|222084473|ref|YP_002543002.1| pilus assembly protein [Agrobacterium radiobacter K84]
gi|221721921|gb|ACM25077.1| pilus assembly protein [Agrobacterium radiobacter K84]
Length = 335
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/319 (17%), Positives = 129/319 (40%), Gaps = 21/319 (6%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D L + + AVS ++ Y V+ + + + S E R + + +
Sbjct: 5 DPVVLLIVVLAAVSAAAVCYGVLYSQIEAQKKTDSRVSRVKAAESDRTKVKVARDRVQEM 64
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S+ R +L++ ++K ++ +++ +L AG + V ++ + ++
Sbjct: 65 SKRRKSVQDTLKD-LEKRQVENTKKKQSLKARLVQAGL--SLTPARFYVFSVLFGLFVMV 121
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ ++ + PF F P + L+++RQ+ +P+ALDL
Sbjct: 122 VAFLFGAPLAVIAGLPF-----------AAAFGLPRWVVGFLIKRRQNKFLEEFPNALDL 170
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + SG+ ++ A+R VA + P+ E + + A N +
Sbjct: 171 ITRSIRSGLPLNDAVRLVASEARE---PVRTEFRRVVETQQVGLSMTDACARMNNHMPLQ 227
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V + + + G ++ ++L L R + M+A+ A S+ K + +II LP
Sbjct: 228 EVNFFSIVIAIQAQAGGNLSEALGNLAKVLRERKKMKAKVVALSMEAKASA-VIIGALPF 286
Query: 310 LILVII---GPAILSIIDT 325
++++++ P + I+ T
Sbjct: 287 IVMLLVYLTSPQYMMILFT 305
>gi|116671217|ref|YP_832150.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611326|gb|ABK04050.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 313
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/290 (18%), Positives = 108/290 (37%), Gaps = 6/290 (2%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+P + +R++ + + K + S + L L+ + L +
Sbjct: 26 LPFMRPMSFAERIEPQLKSQNLESKLLLASTDNLTPFGPLELILRPMLKEGLSVLA-RFN 84
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L + +L AG R S+ +L+ ++ +L I ++ V A
Sbjct: 85 LGSSALSRRLAQAGVR--KSVVDFRAEQLLWAVLGFVLATGLILVGAASGQFNPFFAVVA 142
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+ GF + + +++R+ + +P +L+ + V +G S AL RV
Sbjct: 143 VLGSALGGFLFRDYCLGSQIKRREKLMMAEFPSLAELMALAVSAGESATGALDRVCR--- 199
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ E L + E A + F RT + + +I + GT + D L
Sbjct: 200 SSHGELAREFELVLGETRAGKPLVEALQRFSARTDLGPLVRFVDGIIVAVERGTPLADVL 259
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R + R + + A + VP++ LP+ ++ + P + +I
Sbjct: 260 RAQAQDVRDTAKRDLMESAGKKEIAMMVPLVFGVLPLTVIFAVFPGLAAI 309
>gi|167738668|ref|ZP_02411442.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 14]
Length = 253
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 71/254 (27%), Positives = 131/254 (51%), Gaps = 1/254 (0%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R ++ + + +++ + + +L +AGFR +++++ ++LVV + +
Sbjct: 1 RVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALAL 60
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
++ +Y LRV + +G P + ++ +RQ +I PDALDLL+IC
Sbjct: 61 GAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICT 119
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S+ A+RRVA ++ PL++E + EL + A R + +R
Sbjct: 120 NAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRAL 179
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+
Sbjct: 180 VTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIA 239
Query: 315 IGPAILSIIDTMKD 328
GPA++ +I
Sbjct: 240 AGPAVIRLIAVFHK 253
>gi|170692559|ref|ZP_02883721.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170142215|gb|EDT10381.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 318
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 81/298 (27%), Positives = 146/298 (48%), Gaps = 8/298 (2%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
++ L ++++R+ E ++ + SA S R + R +
Sbjct: 23 VVALMWWLMPRDMQRRI-------EQAGGVSLSPEARPSAVSGWAERIADISRPISQLSI 75
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
K D + +L AG+RS + + + + ++ +LG+ + + + +
Sbjct: 76 PKEGWEDSPLRLRLMNAGWRSSTAAGLYFAAKTALALLLPLLGL-VALTHMPSINTDYTV 134
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ L+ G+ P+ ++ +RQ I ++PDALDLL +CVE+G+ +D AL RVA
Sbjct: 135 IALILALLAAFGYYVPNAVLARCRARRQRRIVESFPDALDLLTVCVEAGLGMDAALMRVA 194
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ S ++ E+ L + EL ++ A NF RT + + L+Q++R+GTSI
Sbjct: 195 DEMTLASPEVANELQLMLLELRSGFTKEKALRNFALRTGAEDIDTFASMLVQAERFGTSI 254
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
G SLRV+ R+ R M AE++AA + KL P+I P L+ V+IGPA + I +
Sbjct: 255 GASLRVMSDTLRTRRRMRAEERAAKIALKLLFPLIFCIFPALMTVLIGPAFIHIYRVL 312
>gi|319940445|ref|ZP_08014790.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
3_1_45B]
gi|319806071|gb|EFW02820.1| hypothetical protein HMPREF9464_00009 [Sutterella wadsworthensis
3_1_45B]
Length = 303
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/309 (19%), Positives = 144/309 (46%), Gaps = 8/309 (2%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ T + +F+L ++ + + ++ +++ ++ + +
Sbjct: 1 MITWIIVFALALLSIVVFVFALRSQQDAEALEDRLAGTIDEEAAAHPHQAGGIEPLPEWI 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + F KL E L AGF SL + L+++ ++ +
Sbjct: 61 QPVARFGLKLAGNDKSR-ETTALLLAQAGFARPGSLGVFLLLKTLLGLGIAAALFF---- 115
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + + G P + ++ +R ++++R+ PDALDL++IC E+G
Sbjct: 116 ---GTQERSIGTIALMGAGYFAGGILPEWVLKSMAARRYTALERSMPDALDLMVICAEAG 172
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + ++ V+ ++ + L+ E+ LT AEL +P R A N RT++ +
Sbjct: 173 LPFTRIVKVVSRELELSAPVLAHELTLTNAELEIMPERSAALRNLAERTRVPSIEGMVST 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
LIQ++++GT + +L + +E+RS ++ E++A L +L++P++ LP ++ ++ P
Sbjct: 233 LIQAEQFGTPLAQALHNIAAESRSTLILTLEERAGKLPARLSLPLMTLILPPVVAIVAAP 292
Query: 318 AILSIIDTM 326
A++ +I ++
Sbjct: 293 ALMRVIRSL 301
>gi|323529408|ref|YP_004231560.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386410|gb|ADX58500.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 319
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 82/322 (25%), Positives = 150/322 (46%), Gaps = 9/322 (2%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
D+ + + ++ F+ + AV+ + E +
Sbjct: 1 MMQTLDSANMLLLGGVFLAAFAAVVAVMWWMTPRD--------MQRRIEQAGGVSLAPEA 52
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ +S + + R + K D + +L AG+RS + + + V+
Sbjct: 53 PSAVASGWAEKIADMSRPISQLSIPKEGWEDSPLRLRLMNAGWRSSTAAALYFAAKTVLA 112
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ +LG+ + + F + + ++ +G+ P+ ++ +RQ +I +P
Sbjct: 113 LLLPLLGLAALMQMPSVNGQ-FAVSALILAMLAAIGYYVPNAVLARCRARRQRAIVEGFP 171
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALDLL +CVE+G+ +D AL RVA ++ S ++ E+ L + EL ++ A NF
Sbjct: 172 DALDLLTVCVEAGLGMDAALMRVAGEMQLASPEVASELQLMLLELRSGFTKEKALRNFAL 231
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +D + L+Q+DR+GTSIG SLRV+ R+ R M AE++AA + KL P+I
Sbjct: 232 RTGVDDIDTFASMLVQADRFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKLLFPLIF 291
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P L+ V++GPA + I +
Sbjct: 292 CIFPALMTVLMGPAFIHIYRVL 313
>gi|54309665|ref|YP_130685.1| Flp pilus assembly protein TadC [Photobacterium profundum SS9]
gi|46914103|emb|CAG20883.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum SS9]
Length = 283
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/262 (18%), Positives = 106/262 (40%), Gaps = 9/262 (3%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
++ S L + L + + +++ + AGF + + +
Sbjct: 25 EQAKQAHVESYLSAKKDGRLTRLNRFITHLGKNHQQDLEQQFVDAGFYNTQFTKYYVPAK 84
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + +I+ + + F + + P + +S +
Sbjct: 85 LTL--------VIFTCVVVLMSDLSFTNQAAIGAVAMIAILLVPEMVLSMRKKALILKTS 136
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD++ +CV++G++I+ AL ++ ++ L + T + A
Sbjct: 137 RQLPYMLDMMSVCVQTGMTIEAALTYLSTELEAFDRDLCFHIKKTADSARV-KGLEKALI 195
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R VR+ T LIQ+ +YGTSI + L L + R +++ E+K L K++V
Sbjct: 196 ELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTMEEKIGKLAAKMSV 255
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
P+I+ + ++++I+ P ++ +
Sbjct: 256 PLILLIMFPIVILILAPGMMQM 277
>gi|167821658|ref|ZP_02453338.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 91]
Length = 266
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/262 (27%), Positives = 133/262 (50%), Gaps = 1/262 (0%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
A + R ++ + + +++ + + +L +AGFR +++++ ++LVV
Sbjct: 6 RAGRSVPRRVAQRVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGAC 65
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ + ++ +Y LRV + +G P + ++ +RQ +I PDA
Sbjct: 66 AGLAALALGAHVPRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPDA 124
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL+IC +G S+ A+RRVA ++ PL++E + EL + A R
Sbjct: 125 LDLLVICTNAGNSLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAARI 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R L+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F
Sbjct: 185 GLPSMRALVTTLVQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFV 244
Query: 307 LPVLILVIIGPAILSIIDTMKD 328
+P + L+ GPA++ +I
Sbjct: 245 MPTVALIAAGPAVIRLIAVFHK 266
>gi|221070078|ref|ZP_03546183.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220715101|gb|EED70469.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 317
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/321 (19%), Positives = 128/321 (39%), Gaps = 10/321 (3%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + L + ++ A + + ++ + E+ K V + S
Sbjct: 1 METSRLLLMLSVAFLALAALIGAILIAYAHQRRERSSKVVQDALSRSGAAAANTTAVLSK 60
Query: 69 SSRLRTRDSKS--LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ L + L + LV + L G+ S + L+ R
Sbjct: 61 PADLLRSLNGDGDLPAHWLNTSFGKALVAQEDRILLSKCGWGSTRAQLQYLLARC----- 115
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ + + + + + + +GF P + ++ ++R++S+ R P
Sbjct: 116 ---VVSVLLLLLAAFVFSGSKHFLLYLFAAFTIGFLLPKWVLRSVARRRRASVARELPLL 172
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DLL + +G+S+DQ L+ + D G LS E+ L + S R+ +F
Sbjct: 173 VDLLGLLQGTGMSLDQTLQVIGSDFGNVMPVLSREIQLANQQYSRGGTRERSFARMSEVY 232
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
Q D + N T + Q DRYG ++ + LR+ R +R + ++ + K+T M++
Sbjct: 233 QSDNLANLTSLMTQIDRYGGAVQEPLRIFGERLREQRKAKMKEMIGKISVKMTGVMVLTL 292
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LP LI+V GP L+++ +
Sbjct: 293 LPALIIVTAGPGFLAVMKALG 313
>gi|167719676|ref|ZP_02402912.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei DM98]
Length = 249
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 70/250 (28%), Positives = 128/250 (51%), Gaps = 1/250 (0%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ + +++ + + +L +AGFR +++++ ++LVV + +
Sbjct: 1 RVASLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHV 60
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
++ +Y LRV + +G P + ++ +RQ +I PDALDLL+IC +G
Sbjct: 61 PRVGDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGN 119
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ A+RRVA ++ PL++E + EL + A R + +R L
Sbjct: 120 SLAVAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTL 179
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+QS +YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA
Sbjct: 180 VQSQQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPA 239
Query: 319 ILSIIDTMKD 328
++ +I
Sbjct: 240 VIRLIAVFHK 249
>gi|94497257|ref|ZP_01303829.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
gi|94423362|gb|EAT08391.1| hypothetical protein SKA58_13683 [Sphingomonas sp. SKA58]
Length = 332
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/298 (20%), Positives = 119/298 (39%), Gaps = 22/298 (7%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I AV + +++ V + G + R + VA R + L+ R+R S
Sbjct: 6 ILIAVLLAAMLGMVAMAFAGPSPEKARKRRVATIRGRHGESAEALLEA-----RMRRAIS 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K+ + + +N+ +++ G +++L+ + ++ ++ L + F
Sbjct: 61 NRPTGAEAKMLVSLVPNPDNLTKRIKMTG--KKWTLSQYMTACAIIFLLITALLALRGFP 118
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ A+++ G P W+ L+ KR S +PDAL+LL + SG
Sbjct: 119 F-----------FFAMLVGAAAGLGLPHWWVGRLITKRVSQFNAKFPDALELLTRGLRSG 167
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ I + L V+ +I G P+ EE L + + A + +R +
Sbjct: 168 LPIAETLGVVSNEIPG---PVGEEFKLITERIKIGRTMEQALQETADRLGTAEFQFFVIT 224
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L G ++ ++L L + R M+ + +A S K + II LP L+ +I
Sbjct: 225 LSIQRETGGNLAETLSNLATVLRQRSQMKLKIRAMSSESKASA-YIIGVLPFLVFGMI 281
>gi|84385679|ref|ZP_00988710.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
12B01]
gi|84379659|gb|EAP96511.1| hypothetical Flp pilus assembly protein TadC [Vibrio splendidus
12B01]
Length = 280
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 100/245 (40%), Gaps = 9/245 (3%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ + + K+ AG+ + + +L + + G
Sbjct: 41 RAPSRVNRFFVRFGKEHRHELEQKMIEAGYYNTDWAKFYFPAK--------LLVLALVSG 92
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L + ++ VI P + + S P LD++ +CV++G
Sbjct: 93 LVLLGDMTSTNKLLVVIFSLIGVIVVPDTMLQMRRKMLISRTSAQLPYLLDMMSVCVQTG 152
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++I+ AL + +++ L ++ T + A + R VR+
Sbjct: 153 MTIEAALVYLGKELAEFDSDLCYQIKRTSDSAKI-HGLEKALNDLSERIPTPPVRSFVLT 211
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+ +YGTS+ L L + R +++ E+K L K++VP+I+F + ++++I+ P
Sbjct: 212 IIQNLQYGTSVASVLSDLAEDMRKVQILTVEEKVGKLSAKMSVPLILFIMFPIVILILAP 271
Query: 318 AILSI 322
+I+ +
Sbjct: 272 SIMQM 276
>gi|299069494|emb|CBJ40763.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
Length = 324
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/327 (16%), Positives = 127/327 (38%), Gaps = 21/327 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVI--PSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
D + L +++T A + + + + + + K +++ R + +
Sbjct: 1 MDDSLLTLSLTAATAGLLVFGGIAVHAVLMRYRSVRKLDTALSDVRAAGTQAAAPAGVPV 60
Query: 67 SASSRLRTRDSKSLRNFVKKLN-------LKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ ++ L+ V K+ L +V E L G+ E + +
Sbjct: 61 PVPAPKPRPQAQQLQQQVAKVGQRWIDTGLGHRIVTEEDRKLLEECGYYGEQARTVFGGT 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R+++P ++G+++ F+ + +G+ AP ++ R+ +
Sbjct: 121 RILLPPFLCVVGVLYA--------ASFREALLCGFAGFALGYLAPKWLLARRKASRRHRL 172
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D+L + G+SIDQ+L+ +A + G L++E + + R+
Sbjct: 173 DDELPVMVDMLRLLQGVGLSIDQSLQVIANEFHGMLPVLADEFGRANQQFASGRPREQTL 232
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ L Q DR+G ++ + LR + R +++ L K+T
Sbjct: 233 LRISRLFDNEDLKGLITLLTQVDRFGGAVQEPLRQFGLRLQENRRSRLKERVGKLTVKMT 292
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
V M++ L ++ GP +S+ ++
Sbjct: 293 VVMVLTLL----IITAGPGFMSVTRSL 315
>gi|28900581|ref|NP_800236.1| putative TadC protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260365461|ref|ZP_05777998.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|260877526|ref|ZP_05889881.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|260897533|ref|ZP_05906029.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|260901735|ref|ZP_05910130.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|28808961|dbj|BAC62069.1| putative TadC [Vibrio parahaemolyticus RIMD 2210633]
gi|308087116|gb|EFO36811.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus Peru-466]
gi|308090674|gb|EFO40369.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AN-5034]
gi|308108821|gb|EFO46361.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ4037]
gi|308114358|gb|EFO51898.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus K5030]
gi|328470523|gb|EGF41434.1| putative TadC protein [Vibrio parahaemolyticus 10329]
Length = 288
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/251 (22%), Positives = 110/251 (43%), Gaps = 9/251 (3%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+T L + +L+ E N L AG SE+ +++++ L+ +
Sbjct: 46 KTPFVDKLSLHLSRLSFNK----EETKNNLVRAGIHSEFIAQAYYLLKIIP----LVFCL 97
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+I E F + L V AP ++IS+ + P LDL+ +
Sbjct: 98 AFIGYSYIQGEMEFSSAFISFSLSMLVCLIAPDMYISSRGNANVRHVSSRLPFLLDLMNV 157
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G++++ +L ++ ++ L+ + T A FY+ +
Sbjct: 158 CVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSERAKI-VGLDRALTEFYDLVPTTEAQ 216
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L QS +YG+S+G L L S+ R ++E E+K +G K+++PMI F + +++
Sbjct: 217 SFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPMIAFIMIPIVV 276
Query: 313 VIIGPAILSII 323
+I P I+ ++
Sbjct: 277 LIAAPGIMRML 287
>gi|167824262|ref|ZP_02455733.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 9]
gi|167919042|ref|ZP_02506133.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei BCC215]
Length = 246
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 70/247 (28%), Positives = 127/247 (51%), Gaps = 1/247 (0%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ +++ + + +L +AGFR +++++ ++LVV + + ++
Sbjct: 1 SLGERVPVVDATQRMKLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRV 60
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+Y LRV + +G P + ++ +RQ +I PDALDLL+IC +G S+
Sbjct: 61 GDY-VVLRVLMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLA 119
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+RRVA ++ PL++E + EL + A R + +R L+QS
Sbjct: 120 VAIRRVASELKTICPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQS 179
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+YGT I SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++
Sbjct: 180 QQYGTPITQSLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIR 239
Query: 322 IIDTMKD 328
+I
Sbjct: 240 LIAVFHK 246
>gi|153836407|ref|ZP_01989074.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
gi|149750309|gb|EDM61054.1| Flp pilus assembly protein TadC [Vibrio parahaemolyticus AQ3810]
Length = 288
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/251 (22%), Positives = 110/251 (43%), Gaps = 9/251 (3%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+T L + +L+ E N L AG SE+ +++++ L+ +
Sbjct: 46 KTPFIDKLSLHLSRLSFNK----EETKNNLVRAGIHSEFIAQAYYLLKIIP----LVFCL 97
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+I E F + L V AP ++IS+ + P LDL+ +
Sbjct: 98 AFIGYSYIQGEMEFSSAFISFSLSMLVCLIAPDMYISSRGNANVRHVSSRLPFLLDLMNV 157
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G++++ +L ++ ++ L+ + T A FY+ +
Sbjct: 158 CVHTGMTLEASLDYLSNELKTVDENLAYVVKKTSERAKI-VGLDRALTEFYDLVPTTEAQ 216
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L QS +YG+S+G L L S+ R ++E E+K +G K+++PMI F + +++
Sbjct: 217 SFVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSIPMIAFIMIPIVV 276
Query: 313 VIIGPAILSII 323
+I P I+ ++
Sbjct: 277 LIAAPGIMRML 287
>gi|27378607|ref|NP_770136.1| hypothetical protein blr3496 [Bradyrhizobium japonicum USDA 110]
gi|27351755|dbj|BAC48761.1| blr3496 [Bradyrhizobium japonicum USDA 110]
Length = 302
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 66/300 (22%), Positives = 139/300 (46%), Gaps = 7/300 (2%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
+V ++ +G + + + + ++ + + + +
Sbjct: 5 LGLVALAVAAGSATSLLIIREIHIRTVDARVANAVMGGAGGATPFQDVTGWFSWLGTRYR 64
Query: 89 -LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
A + + L+++GF +L + V+ V + I+ +L
Sbjct: 65 RFYAEENLDQLRTILQSSGFNHRRALPTWIGVKAVAMFLCPIIAGCVA----QLFAKSMT 120
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ ++ VG P + ++ L ++ ++I+ PD +DLL++C E+G+ ++ L RV
Sbjct: 121 DVLVFTLMGVMVGILGPRLILAVLKRRFDAAIRVGTPDMIDLLVVCSEAGMGLESGLARV 180
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A+++ + P++ + + +L LPNR AF+ T D +R + QS +YGT
Sbjct: 181 AQEMSETNPPMARVLHCLLDDLRILPNRSDAFDKLG--TTSDGLRRFGTMVAQSLQYGTP 238
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+G +LR + + R ER+ + E++A LG KLT+PM++F LP + +V+ G IL ++ +
Sbjct: 239 VGQALRNIAVDLRRERITKLEERAHKLGAKLTIPMVLFLLPAMFVVLGGSPILHLVRSFA 298
>gi|283778864|ref|YP_003369619.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437317|gb|ADB15759.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 361
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 126/333 (37%), Gaps = 33/333 (9%)
Query: 5 FFDLFDATELAVAITTA----------VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREI 54
DL +L + A V++ + A+V+ + KR K VAVER
Sbjct: 1 MQDLIQQVQLWLFTIGAPAWLQRPGSWVALGCGLLALVLVI---RMILKRTKQVAVER-- 55
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
SL + + LR AGF S ++
Sbjct: 56 -------------GLEPEAGGVFGSLTPALAAQIPGSEKERTEFAAMLRQAGFYSRTAMA 102
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ R ++ + L+ + + + + I P ++I +K
Sbjct: 103 SVYAYRFLLLVFPLVCAGLIAIFSPRSQTFRI---LFVGAFIAIALSIIPRLYIFFRRRK 159
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R + I D LD+L +C+ G+ + +L VA+++ L++E+L+ + +
Sbjct: 160 RLTEINNGLADMLDMLGMCLSGGMPLSASLDHVAKNL-TNYPALADELLIMKRQAEV-SS 217
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A +F NR VR L + D+ G+SI +L R+ R A +A
Sbjct: 218 LKHALADFANRLDTPEVRQVASLLSRGDQLGSSISRNLLDQADHFRTARRQMATMQANRT 277
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
LT P++ F P ++++++ P+ + + + +
Sbjct: 278 PVFLTFPLMFCFAPAVLILLMSPSFMQLSEFLS 310
>gi|296158799|ref|ZP_06841628.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891004|gb|EFG70793.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 336
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 6/278 (2%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS 109
E + + + L R + + ++ +V E L GF
Sbjct: 61 GEGSQSGARAAARSVQPTGLKGLLERFAHTGIRWLD-TPFGRQIVAEEDRRLLEQCGFVD 119
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ + LV RLV ++ +L G + Y V VI+ GF P +
Sbjct: 120 TRTRGLFLVARLVGALVLPVLAGTLTRGQLEGPRY-----VALVIIAAMAGFMLPKFALR 174
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
KR++ + P +DLL + G+S+DQ+L+ V D G L+ E+ + +
Sbjct: 175 RRAGKRRNGVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQRQF 234
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ R+ + + +R + L+Q DR+G ++ + L+ R R +
Sbjct: 235 AAGRTREQSLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAMLRE 294
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ L K+T MI+ LP L++V GP +L++ ++
Sbjct: 295 RIGRLAVKMTGVMIVTLLPALMIVTAGPGVLAVQHSLG 332
>gi|209546474|ref|YP_002278392.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537718|gb|ACI57652.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 314
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/304 (18%), Positives = 123/304 (40%), Gaps = 10/304 (3%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
++E + + ++ A E+ R+ + T++ +
Sbjct: 1 MSSEYGIYLIVFFAVLIFTAAASELFFRQREVSVRVSKSSATAREEFHLGDTTIADLGEA 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + +N + N+L AG+ + ++ VR + +
Sbjct: 61 ENRLIRRYFEITRRDTNVN--------STQNRLIRAGYFAAGAVTTFQAVRA--AVCIGV 110
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + + + A + F +++I ++ +R +PD +D+
Sbjct: 111 MVSMVWTLNWVVPDMSGVATLIAAMFAAGSTFILVNIYIDRRGAAKEREYRRLFPDFMDM 170
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L++C+++G+SI+ A RVA + + + + + E+ + A N R ++D
Sbjct: 171 LIVCLDAGMSIEAAANRVAREFVDKRQDFGLHLSIMMLEVRGGRRLREALANLAIRLRID 230
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R + QS+ GTS+ +LRV E R R++ AE+KA +L K+ +P+ F PV
Sbjct: 231 EARALSVLFRQSEELGTSVTQTLRVYCKEMRDIRIVRAEEKANALPVKMLLPLGAFLFPV 290
Query: 310 LILV 313
+++
Sbjct: 291 SLII 294
>gi|148655544|ref|YP_001275749.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148567654|gb|ABQ89799.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 299
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 70/314 (22%), Positives = 136/314 (43%), Gaps = 23/314 (7%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ +++ +++ + +R+++ E +I + + S +R
Sbjct: 1 MSVVISVMAIIAVELFFAGL-----------RRIRTPGYEAQIAQYGSLAHTGPRSRYAR 49
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ L + V L+ + E L AG + +++ V+L + L++G
Sbjct: 50 WVRPYALRLASNVT--ALRGLTDFEKTARMLDYAGNPAGMTVHEFHGVQLYGGLAGLLIG 107
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+W L ++++ GF P +W+ V++RQ +I A PD LD+L
Sbjct: 108 GVW-------FALGLPLGAILLVILPLGGFFYPLLWLRGRVKQRQHAITVALPDLLDMLA 160
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CV +G+ D AL + E PL EEM + EL R+ AF N R D +
Sbjct: 161 VCVSAGMGFDIALTLLVE---RGEGPLYEEMGRMLHELQMGAPREQAFRNLAARNSSDAL 217
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R AL+Q++ G+ I +L + R+ R A ++ A K+T+ +++ P ++
Sbjct: 218 RGFIDALLQAEELGSPIATTLERQAEDIRTGRRYRAREEGAKAATKITLIVVVLVTPSVL 277
Query: 312 LVIIGPAILSIIDT 325
+II +SI+ +
Sbjct: 278 CLIIAALGMSIMRS 291
>gi|149188858|ref|ZP_01867148.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
gi|148837278|gb|EDL54225.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
Length = 282
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/266 (15%), Positives = 103/266 (38%), Gaps = 9/266 (3%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ ++ + + S + + K AG+ +
Sbjct: 20 ESLRAEQRRKKVEDYIGGQTLNSSSRVNRFFVRFGKEHRHELEQKFIEAGYYNTEWARFY 79
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+L V + + + + ++ V++ P + + +
Sbjct: 80 FPAKLAVLAV--------LSVLVLMTDMTASNKLLTVLVSLVAVIVVPDMLLQLRRKVLI 131
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
P LD++ +CV++G++I+ AL + +++ L ++ T +
Sbjct: 132 GKTSAQLPYLLDMMSVCVQTGMTIEAALIYLGKELAEFDSDLCYQVKRTSDSAKI-HGLE 190
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + +R VR+ +IQ+ +YGTS+ L L + R +++ E+K L
Sbjct: 191 KALNDLSDRIPTPAVRSFVLTIIQNLQYGTSVAQVLSDLAEDMRKVQILAVEEKVGKLSA 250
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
K+++P+I+F + ++++I+ P I+ +
Sbjct: 251 KMSIPLILFIMFPIVILILAPGIMQM 276
>gi|316933035|ref|YP_004108017.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
gi|315600749|gb|ADU43284.1| Type II secretion system F domain [Rhodopseudomonas palustris DX-1]
Length = 324
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/321 (18%), Positives = 126/321 (39%), Gaps = 31/321 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+ AV++ + + + P L + +EKR+ SVA +R+ T
Sbjct: 1 MEMQTLALGFFAAVAVGGVAWVFIYPLLSGEKNVEKRLTSVARTTPAVRQVDRTQR---- 56
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + SL+ + + + + +L AG +++ VV + ++
Sbjct: 57 ---SRREQIEGSLKEIETRSQKQK---NVPLGMRLSQAGL--DWTPAKFGVVSAAIGVVV 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + I+ G F G P + L ++R+ A PDA+
Sbjct: 109 LGIAIMIGTGLVAAAGLGFAAGFGL-----------PRWTLGFLKRRREKKFLAALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + +++ VA PL E I + A Y R
Sbjct: 158 DVIVRGIKAGLPLFDSIKVVA---ADAPEPLRSEFNAIIETQAIGMPLADACARLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + +A S+ K + II L
Sbjct: 215 LPEANFFGIVIAIQQKSGGNLSEALSNLSKVLRDRKKMAEKIQAMSMEAKASA-TIIGAL 273
Query: 308 PVLILVIIG---PAILSIIDT 325
P+++++++ P +S++ T
Sbjct: 274 PLIVMLLVYLTTPDYISLLWT 294
>gi|255020083|ref|ZP_05292154.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970445|gb|EET27936.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 337
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 9/221 (4%)
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+++ AG + + ++++ + L ++ +L +
Sbjct: 119 RIQKAGLNYLITPRDFMALKILSALFALFFALLVYAAIGVFRWE-------FTLLGMVLT 171
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P +W+ ++RQ I + P LD + + VE G+++ A++ + G PL
Sbjct: 172 SFYPDLWLVEQAKRRQKRILKDLPVYLDFITLMVEGGLNLTGAIQIAVD--KGPEGPLRN 229
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + + +L R F F +R M +R+ A+IQ++ G S+ L+ + R
Sbjct: 230 EFRIILRDLRSGMPRVEVFRRFGDRVAMQELRSLVTAIIQAEERGGSLAPVLKAQAEQRR 289
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
ER + AEK A KL P+I+F P++ +V+ +
Sbjct: 290 EERFLRAEKAALEAPVKLLAPLIMFIFPIVFIVLTFVIYMK 330
>gi|119773848|ref|YP_926588.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
gi|119766348|gb|ABL98918.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
Length = 287
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 9/279 (3%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
V+ R R + D + L+ ++ E I KL+ +G
Sbjct: 18 VSCARIYRRVPEERREFMDPLTPGLKLIWPLVNVVAFYFSEKLSVDYLERIAKKLQVSGL 77
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ +R++ + + + + D+L ++L G+ P +
Sbjct: 78 SYLMTAEQYFAIRILSTLFATFIVWLGCWMLDELSAN-------YLLLAAIAGYFLPMLT 130
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+++L + RQ I + P LD L + +E+G+++ A+ + E G PL E I
Sbjct: 131 LNDLRRTRQEQIVKVLPVYLDYLTMAIEAGLNMSAAIAQAVE--RGPDGPLKIEFEKVIR 188
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ +R AF N +R Q+ + + AL Q++R G S+G +LR+ + R ER A
Sbjct: 189 DMRAGISRAQAFRNMADRVQISELNSLVSALAQAERTGASLGYTLRIQADQRRVERFQRA 248
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
EKKA KL P+I+F PV L+++ P + + M
Sbjct: 249 EKKAMEAPIKLMFPLIMFIFPVTFLILLFPILSKFLFEM 287
>gi|307726380|ref|YP_003909593.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586905|gb|ADN60302.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 318
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 80/316 (25%), Positives = 150/316 (47%), Gaps = 8/316 (2%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
++ + + + ++ + ++++R+ E + S SS
Sbjct: 5 DSQNVLLLGGVFMVVFAAVVAIMWWMTPKDMQRRI-------EQAGGVSLAPQAVPSGSS 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + R + K D + +L AG+RS + + + + ++ L
Sbjct: 58 GWAEKIADISRPISQLSIPKEGWEDSPLRLRLMNAGWRSATAAALYFAAKTALALLLPAL 117
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G++ + + F + + ++ +G+ P+ ++ +RQ +I +PDALDLL
Sbjct: 118 GLVALLQMPFINGQ-FAVSALILAMLAAIGYYLPNAVLARCRARRQRAIVEGFPDALDLL 176
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+CVE+G+ +D AL RVA +I S ++ E+ L + EL ++ A NF RT ++
Sbjct: 177 TVCVEAGLGMDAALMRVAGEIELASPEVASELQLMLLELRSGFTKEKALRNFALRTGVED 236
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L+Q+DR+GTSIG SLRV+ R+ R M AE++AA + KL P+I P L
Sbjct: 237 IDTFASMLVQADRFGTSIGASLRVMSDTLRTRRRMRAEERAAKIALKLLFPLIFCIFPAL 296
Query: 311 ILVIIGPAILSIIDTM 326
+ V++GPA + I +
Sbjct: 297 MTVLMGPAFIHIYRVL 312
>gi|91977989|ref|YP_570648.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
gi|91684445|gb|ABE40747.1| type II secretion system protein [Rhodopseudomonas palustris BisB5]
Length = 324
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 124/320 (38%), Gaps = 29/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
L++ AV++ L + + P L + EKR SVA +R+ + T
Sbjct: 1 MQMQALSLGFFAAVAVGGLAWVFLYPMLSGEKQAEKRRSSVARVTPAVRQVERTQR---- 56
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + SLR+ + K + + +L AG +++ + + V+ +
Sbjct: 57 ---SRREQVEGSLRDIEAR---KQKQKNVALSTRLTQAGL--DWTPKKFITISAVLGVFV 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +++ G F G P + L ++R+ A PDA+
Sbjct: 109 FAVTMLFGGGLTAAAGLAFAAGFGL-----------PRWMLGFLKKRREKRFLNALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + +++ VA PL E I + A Y+R
Sbjct: 158 DVIVRGIKAGLPLFDSIKVVA---ADSPEPLKTEFNAIIETQTIGMPIGEACARLYDRMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + +A S+ K + +I
Sbjct: 215 VPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMSMEAKASAAIIGSLP 274
Query: 308 PVLILV--IIGPAILSIIDT 325
P+++L+ + P ++++ T
Sbjct: 275 PIVMLLVYMSTPDYIALLWT 294
>gi|84498180|ref|ZP_00996977.1| putative membrane protein [Janibacter sp. HTCC2649]
gi|84381680|gb|EAP97563.1| putative membrane protein [Janibacter sp. HTCC2649]
Length = 654
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 116/314 (36%), Gaps = 26/314 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A A+ + +L + + + R+ V E L + + ++ +S +
Sbjct: 334 LIAALIALFVGALTLVIAVLDPFRSKRHDRVAQV--EHYTLGEASRLPRKAEANASVVAQ 391
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + ++ A V+R+V ++ L +
Sbjct: 392 SAVRMGERVMA-----GRETTSRTMALIQRADLPLR--AGEWFVLRVVAIVVGGALTPVV 444
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ V + +G+ P+ + L +R ++ PD L L+ +
Sbjct: 445 L----------AMPWWFTVPIGIALGYFLPAAVLRMLAGRRAKKFEQMLPDILMLVATTL 494
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SG S+ QAL VA + P +E T+AE + A EN R + +R
Sbjct: 495 ASGFSLTQALDAVAR---DSAQPAGKEFSRTLAETRIGADVSDALENMSVRMDSEAMRWT 551
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
T A+ G ++ D+LR R ++ + + S +L+ I+ LP+L+ V
Sbjct: 552 TMAIRIQRDVGGNLADTLRTTAHTLRERESLKRQVNSLSAEGRLSA-YILLGLPILLFVY 610
Query: 315 I---GPAILSIIDT 325
+ PA S++ T
Sbjct: 611 MAWSNPAYTSLLWT 624
>gi|83859361|ref|ZP_00952882.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
gi|83852808|gb|EAP90661.1| hypothetical protein OA2633_13190 [Oceanicaulis alexandrii
HTCC2633]
Length = 331
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 47/298 (15%), Positives = 109/298 (36%), Gaps = 18/298 (6%)
Query: 30 AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNL 89
+ +GS + R + + + A+++ R + + L+
Sbjct: 20 GLGWVFVGSSADKARKARLEGAVGGPVQSTRRRVGAVDAAAQKRRQIQEGLKELEDSQKA 79
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + +L AG I I F ++
Sbjct: 80 ER-KKSLTLRARLDQAGLFKTGPTQFW------------IFSAILGFVAAFMVVVTGLNI 126
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ AV G P + + + RQ + DALD+++ V+SG+ +++ L+ +A+
Sbjct: 127 LFAVAAAIIAGLGLPRWVLGMMRKGRQKKFTENFADALDIIVRGVKSGLPLNETLKIIAQ 186
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ P+ +E L + L+ + + + R + + T L + G ++
Sbjct: 187 EGE---APVKQEFQLLVEGLAVGVDVEEGMRRMHRRMPLPELSFFTTVLAIQQKTGGNLA 243
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--VLILVIIGPAILSIIDT 325
++L L + R+ ++M + A S K + +I P +++ I+ P ++ + T
Sbjct: 244 EALNNLSAVLRARKMMREKVSALSSEAKASAWIIGSLPPGVGVMVSIMSPDYMTPLLT 301
>gi|218676254|ref|YP_002395073.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
gi|218324522|emb|CAV26000.1| putative Flp pilus assembly protein TadC [Vibrio splendidus LGP32]
Length = 288
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 59/313 (18%), Positives = 129/313 (41%), Gaps = 29/313 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
T L + +S+ IY + +E R + E R
Sbjct: 4 ETVLIWGVIFIISMVLAIYCLRFWDNTRANIETRKIIGSTREEKKR-------------- 49
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L+ + +++ I KL AAGF S++ + +++++ +
Sbjct: 50 ------KDLLKAVLSQISFNKI----ETKRKLVAAGFYSDFLADAYYLLKIIP----FSV 95
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ I E + ++ AP ++S + I P LDL+
Sbjct: 96 CLVLIGFDFYNGETEVIFALLYLLGALLAFIIAPDSYVSARGKANIKHISSRLPFLLDLM 155
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+CV +G++I+ +L +A+++ L+ + +T+ + A E FY
Sbjct: 156 NVCVHTGMTIESSLEYLAKELHSVDSNLAHVVRVTVERSRL-VGLEKALEEFYELVPTSE 214
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ ++QS ++G+S+G L L ++ R +M+ E++ +G K+++P+I F + +
Sbjct: 215 SQSFVMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPI 274
Query: 311 ILVIIGPAILSII 323
+++I P IL ++
Sbjct: 275 VVLIAAPGILRML 287
>gi|148975967|ref|ZP_01812756.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
SWAT-3]
gi|145964712|gb|EDK29965.1| hypothetical Flp pilus assembly protein TadC [Vibrionales bacterium
SWAT-3]
Length = 280
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/305 (17%), Positives = 120/305 (39%), Gaps = 29/305 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ S+ L ++++ + S ++R K VA + +
Sbjct: 1 MMILASLIVLFFSLLFLIIESVRADQRQKKVA--------------------AYIGGDAI 40
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K + + KL AG+ + +++V + + G
Sbjct: 41 KPPSRMNRFFVRFGKEHRHELEQKLIEAGYYNTEWAKFYFPAKVLVLGL--------VSG 92
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L + ++ VI+ P + + S P LD++ +CV++G
Sbjct: 93 LVLLGDMTSTNKLLVVIVSLIAVIVVPDTLLQMRRKMLISKTSAQLPYLLDMMSVCVQTG 152
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++I+ +L + +++ L ++ T + A + R +R+
Sbjct: 153 MTIEASLVYLGKELAEFDSDLCYQIKRTSDSAKI-HGVEKALNDLTERIPTPAIRSFVLT 211
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+IQ+ +YGTS+ +L L + R +++ E+K L K++VP+I+F + ++++I+ P
Sbjct: 212 IIQNLQYGTSVAQTLSDLAEDMRKVQILTVEEKVGKLSAKMSVPLILFIMFPIVILILAP 271
Query: 318 AILSI 322
+I+ +
Sbjct: 272 SIMQM 276
>gi|319785604|ref|YP_004145080.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171492|gb|ADV15030.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 337
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/320 (16%), Positives = 112/320 (35%), Gaps = 21/320 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T LA + S ++ YA + + + + + E R S + +
Sbjct: 4 IDGTVLAFVVLAGFSAGAVAYAFLFTRISNEKQVGKRLETIRTAETDRSVVKASRDRVAE 63
Query: 69 SSRLRTRDSKSLRNFVKKLNLKA-ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+++ R SL K K + + +LR AG + ++ + + I+
Sbjct: 64 AAKRRKSVQDSLNELDAKQKTKDSRVKKPPLKAQLRQAGL--KTTIERFYIYSAICGIVL 121
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + L +G +++ +R + +P+AL
Sbjct: 122 TMAAFVAGAPLIALPGVLLAGGLGLP-----------RWFVTFRRARRVKAFLNEFPNAL 170
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ V+SG+ ++ A+R +A P+ E + + A
Sbjct: 171 DIIVRAVKSGLPLNDAVRLIAN---ESPEPVKTEFRRIVDSQQMGLSIPDATLRMPETMP 227
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G ++ ++L L R + M+A+ A S+ K + II L
Sbjct: 228 CTEASFFGIVIQIQSQAGGNLSEALGNLSRVLRDRKKMKAKVAALSMEAKASAA-IIGAL 286
Query: 308 PVLILVII---GPAILSIID 324
P ++ ++ PA L +
Sbjct: 287 PFIVAFLVYLSSPAYLMPLF 306
>gi|239817416|ref|YP_002946326.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239803993|gb|ACS21060.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 319
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 65/321 (20%), Positives = 129/321 (40%), Gaps = 8/321 (2%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKD 66
F +LA +++ +I A + + ++ A++R+ + + +
Sbjct: 2 TFSPNQLATISLALLALGLMIAAGALIAAELRRARSGQVIGRALQRDATGQVDLKTPVDA 61
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
++S LR K+ V + + GF S+ + I LV RL++ +
Sbjct: 62 ESNSSLRADIELPFHWLDSKIG--RAFVADEDRRLIDQCGFASKQAQLIFLVTRLLLAFL 119
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
I+ I + + + VGF P + + R+ I R P
Sbjct: 120 LPIISYIVW-----KSHLTERTVLVVLAAAFVVGFMTPKWALGRIAAGRRERIARELPLF 174
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DLL + G+S+DQ+L+ +A+D L E+ + S R+ +
Sbjct: 175 VDLLKLLQGVGLSLDQSLQIMADDFSHVLHVLGHELTFANRQYSQGRTREHSLHRLATLH 234
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R L+Q DR+G ++ + LR+ R R E +++ + K+T M+
Sbjct: 235 GNEDLRGLVSLLVQVDRHGGAVQEPLRIFGERLRERRRSEMKERIGKITVKMTGVMVSTL 294
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LP L++V GP ++I ++
Sbjct: 295 LPALVIVTAGPGFIAIFRSLG 315
>gi|148253057|ref|YP_001237642.1| hypothetical protein BBta_1517 [Bradyrhizobium sp. BTAi1]
gi|146405230|gb|ABQ33736.1| putative membrane protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 320
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 79/315 (25%), Positives = 156/315 (49%), Gaps = 13/315 (4%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ + ++ + + + L +R+ L + + +
Sbjct: 15 LMGLFGIIVLAAGGAVLIASSILVHADALARRVN------LALPQAAMAEAAAPGEAHPT 68
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ SL V K L+ I+ + + ++ +++ +V R+V + F L
Sbjct: 69 IVQQLPSLAVGVSKTELQQIIRLFSYLR------VPADRAMSYFVVARVVFALSFATLTA 122
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L + A I+ VG+ +P +I ++V+++ ++ PDAL+LL++
Sbjct: 123 AAAVHWA-FSGARWWLPIMAAIVAAIVGWISPIFYIDHVVRQQTKAVASGLPDALELLVV 181
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CVE+G+S+++ L RVA ++ L++E++LT AE++ LP+R A NF R + VR
Sbjct: 182 CVEAGLSLEEGLHRVAHELREAQPALADELVLTWAEINVLPSRAQALTNFAARNDIPSVR 241
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L QS + GT + SLRV E R++++M E++A+ L LT+P+++F +P + L
Sbjct: 242 SVVSMLSQSLQLGTPLAQSLRVGAVEMRNDQMMLLEERASRLPAMLTIPVMLFIMPTVFL 301
Query: 313 VIIGPAILSIIDTMK 327
++ GPA L +ID +
Sbjct: 302 LVGGPAALRLIDMFQ 316
>gi|294012436|ref|YP_003545896.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675766|dbj|BAI97284.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 332
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/307 (19%), Positives = 123/307 (40%), Gaps = 26/307 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + +A+ A + ++ A PS + ++RM+ + + + + +
Sbjct: 1 MNGNIILMAVLLATMLGLVVMAFSGPSPEKAQ-KRRMELIRGRHSDSTDAILEARMRKAI 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S+R ++ L + V EN+ ++R G +++++ + V+ +
Sbjct: 60 SNRPAGNEASMLVSLV--------PNPENLAKRIRMTG--KKWTVSQYMTACAVIFLALC 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L ++ F + AV+L G P +W+S L++ R +PDAL+
Sbjct: 110 ALLMLRGFP-----------PLFAVMLGLAAGLGLPHMWVSRLIKGRVLKFNAKFPDALE 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + SG+ I + L V+ ++ G P+ EE L + A + +R
Sbjct: 159 LLTRGLRSGLPIAETLNVVSNEVPG---PVGEEFKLITERIKIGKTMDQALQETADRLGT 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +L G ++ ++L L + R M+ + +A S K + II LP
Sbjct: 216 PEFQFFVISLAIQRETGGNLAETLSNLATVLRQRAQMKLKIRAMSSESKASA-YIIGVLP 274
Query: 309 VLILVII 315
+ +I
Sbjct: 275 FTVFGLI 281
>gi|170701756|ref|ZP_02892692.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170133339|gb|EDT01731.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 337
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/274 (18%), Positives = 107/274 (39%), Gaps = 5/274 (1%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
++ + ++ ++V E L GF +
Sbjct: 66 RKEPDARQAPGQPSRLAQMQARLSVFGMRWLDTSIGRLVVAEEDRLLLEQCGFVDTRTRG 125
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ L R+ I+ + + V + VGF P +++ K
Sbjct: 126 LFLSARIACSIVIPLA-----YIGVVGPHVSGTQWWLGVGISFIVGFMVPKLYLRRRAAK 180
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ ++ P +D+L + G+S+DQ+++ V D G LS EM + + +
Sbjct: 181 RRQAVTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRT 240
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R+ + + + + + +R + LIQ D++G ++ + L+ R R ++ L
Sbjct: 241 REQSLQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRL 300
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+T MI+ LP L++V GP ++S++ +
Sbjct: 301 TVKMTGVMIVTLLPALLIVTAGPGMISVLRALNQ 334
>gi|325673436|ref|ZP_08153127.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
gi|325555457|gb|EGD25128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
Length = 296
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 134/311 (43%), Gaps = 21/311 (6%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ A V++ +R ++ + L S S +
Sbjct: 5 LVLVAALSVGGALGVLVWLTAGARDPERGPALQNLQSQLALPIPVSGGAPPLSLGRFVKL 64
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L + AG + + + ++V+ +
Sbjct: 65 ------------LSPPGTMARLERLHILAGRPAAWVPERAAMAKIVLAAAAA------LL 106
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G + P RV + + P + + + Q+RQ++I+ A D LD + I VE+
Sbjct: 107 GLLAVGASPGVGRVLFAAAAVALAYFVPELLLQSRGQERQAAIELALADTLDQMTIAVEA 166
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ + A++R A++ G PL+EE + T+ ++ +R++A+ + RT+ +R +
Sbjct: 167 GLGFEAAMQRAAKNGKG---PLAEEFIRTLQDIQMGQSRRIAYLDLAARTKAPNLRRFLR 223
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A+IQ+D YG +I + LR SE R +R AE+KA + K+ P++ LP + +VI+G
Sbjct: 224 AVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEKAMKVPVKVLFPLMTCILPTIFIVILG 283
Query: 317 PAILSIIDTMK 327
PA++++++ +
Sbjct: 284 PAVINMMEVLG 294
>gi|149188841|ref|ZP_01867131.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
gi|148837261|gb|EDL54208.1| hypothetical Flp pilus assembly protein TadC [Vibrio shilonii AK1]
Length = 283
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 102/232 (43%), Gaps = 9/232 (3%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + KL AG+ ++ L + V + + + + + + +
Sbjct: 57 QRKELEQKLLDAGYYNKNLAKYYLPTKFAVAVCISLAILFLNIAVLYKVVAVVVVMITVI 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
IL + + + I R P LD++ +CV++G++I+ + + +++
Sbjct: 117 ILP--------DIILDIKKKLMVRKISRNLPYVLDIMSVCVQTGMTIEASFDYLHKELAA 168
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
LS ++ T + A + NR V++ +IQ+ +YGTS+ + L
Sbjct: 169 FDSDLSYQIKKTSDAGKI-HGIEKALNDLNNRLPAPEVQSFVLTIIQNLQYGTSVANILS 227
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L + R +L++ E+K L K++VP+I+ + ++++I+ P ++ + T
Sbjct: 228 DLAEDMRRIQLLKVEEKVGKLSAKMSVPLILLIMFPIVILILAPGVMQLDFT 279
>gi|304392380|ref|ZP_07374321.1| type II secretion system protein [Ahrensia sp. R2A130]
gi|303295484|gb|EFL89843.1| type II secretion system protein [Ahrensia sp. R2A130]
Length = 332
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/285 (18%), Positives = 105/285 (36%), Gaps = 16/285 (5%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
S +K+ K ++ +K ++ + + R +L+N + +
Sbjct: 22 YALLYNSIASDKKSKERMQRLQMDKKTKMKVESRKMDEKQRRKSREAALKNVDDQKSKGK 81
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
E L AGF SL VV V+ I+F + ++++ + +
Sbjct: 82 TAGKETFREILEQAGF--TISLGKFYVVSAVIGILFFFIALVFMGATLPIAGGVGFVMGF 139
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
P W+ +KR ++ + +P+A+D+++ ++SG+ ++ LR +A
Sbjct: 140 GA----------PRWWVKRKRKKRFAAFTKTFPNAIDVIVRGIKSGLPLNDCLRIIAT-- 187
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
P+ E I A E Y + + G ++ ++
Sbjct: 188 -DSDEPVRGEFRKLIEAAQMGIPVPEACERLYKSIPTSETNFFSIVIAIQSSAGGNLSEA 246
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L L R R M + +A S K T MII LP ++ +++
Sbjct: 247 LGNLSKVLRERRKMADKIQAFSSEAK-TSTMIIGALPFVVAIMVF 290
>gi|320158388|ref|YP_004190766.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
gi|319933700|gb|ADV88563.1| type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus MO6-24/O]
Length = 292
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 129/309 (41%), Gaps = 27/309 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A+ I A+ + ++ + E ++ + + +K+
Sbjct: 8 AIFILVALIVSVVVAIFALKMWDETRAEISVRKIIGSTKEQQKRD--------------- 52
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+F K+ + + KL AAG S++ + ++V + + G++
Sbjct: 53 ---DLFLSFFKRFSFNK----DETKKKLVAAGIYSDFIAQTYYLFKIVPLFLTIGGGLLA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ F + + P +++S+ + P LDL+ +CV
Sbjct: 106 V----SQEVIDFNEMILIGAFALIIFVAGPDLYLSSRTNTITRHVSSRLPFLLDLMNVCV 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G++I+ L +A+++ L+ + +T+ + A E FY ++
Sbjct: 162 HTGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKV-IGIEKALEEFYEMVPSSEAQSF 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L+QS ++G+S+G L L ++ R +ME E+K LG K+++PMI+F + +I++I
Sbjct: 221 VMTLVQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIPMIVFIMVPIIILI 280
Query: 315 IGPAILSII 323
I P I+ ++
Sbjct: 281 IAPGIMRML 289
>gi|251789651|ref|YP_003004372.1| type II secretion system protein [Dickeya zeae Ech1591]
gi|247538272|gb|ACT06893.1| type II secretion system protein [Dickeya zeae Ech1591]
Length = 318
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 70/292 (23%), Positives = 140/292 (47%), Gaps = 6/292 (2%)
Query: 39 GELEKRMKS--VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE 96
L R+ + E + + A + + + + +L + +
Sbjct: 31 RRLRDRLAAHVAMAETAAVGAPDSILRNQGKALPPRLEKILQPIAAWGVQLA-GSARDRQ 89
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ L AG R +L L+ +L ++ +L + G + + + A ++
Sbjct: 90 QLRRLLDLAGIRRTEALGWLMAGKLGGGLLLALLL---VGGALPPPDRTGLIGLAAALIG 146
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+ G P W+ R + RA PDALDL+++C E+G+SI + L+ V++++G S
Sbjct: 147 FFAGSLLPEAWLKMRAAGRGEKLARAVPDALDLMVVCAEAGLSIGRVLQVVSKELGLSSP 206
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+++E+ T AEL L +R A ++ RT++ + + L+Q++RYGT + +LR +
Sbjct: 207 EMADELRYTAAELQILADRNTALQHLAERTRVSEIESMVATLLQAERYGTPLSQALRTIA 266
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E+R L+ E+KA L +L+VP++ LP +I ++ PA+L ++ + +
Sbjct: 267 DESRKTLLLTLEEKAGKLPAQLSVPLMALILPPIIAIMASPALLRVVRLLGN 318
>gi|90425201|ref|YP_533571.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
gi|90107215|gb|ABD89252.1| type II secretion system protein [Rhodopseudomonas palustris
BisB18]
Length = 324
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/319 (17%), Positives = 125/319 (39%), Gaps = 27/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
LA+A +A+++ L + + PSL + ++ R L + + Q D
Sbjct: 1 MLIQTLAIAFLSAMAVGGLAWVFIYPSLSGQKTAEQ------RRASLARPEPVVRQIDRT 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + SL+ + + + + +L AG +++ L+ V+ +
Sbjct: 55 QRSRREQVEGSLKEVEARHRKEKKV---ALTTRLTQAGV--KWTPKGFLIGSAVLGVTMF 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + G L F G P ++ L ++R+ + +A PDA+D
Sbjct: 110 AITSLLGGGLLAALALGFAAGFGL-----------PRWALNFLKKRREKNFLKALPDAVD 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ +++G+ + +L+ VA PL E L + + A Y R +
Sbjct: 159 VIVRGIKAGLPLFDSLKVVA---ADAPEPLKSEFLAILETQAIGMPLGEACARLYERMPL 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G ++ ++L L R + M + +A S+ K + +I P
Sbjct: 216 PEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKRMAEKIQAMSMEAKASAGIIGSLPP 275
Query: 309 VLILV--IIGPAILSIIDT 325
+++L+ + P +S++ T
Sbjct: 276 IVMLLVYLSTPDYISLLWT 294
>gi|312882149|ref|ZP_07741898.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370195|gb|EFP97698.1| hypothetical protein VIBC2010_06159 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 280
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 110/267 (41%), Gaps = 9/267 (3%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + + + T+ S++ + + KL AG +
Sbjct: 23 RMTQRNKKVALLIGTQSSRTPSRVNRFFVRFGKEHRHELEKKLIDAGIYNRELAKFYFPA 82
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+L++ +I + + + Q ++ IL P + + I
Sbjct: 83 KLMI--------LIVVTSLILISDMTMQNQLMFGILNLIGVILLPDTLLHIKGKLLIGKI 134
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P LD++ +C+++G++I+ +L + E++ L ++ T + A
Sbjct: 135 SAQLPYLLDMMAVCIQTGMTIEASLVYLGEELEEFDKDLCYQIQRTSDSAKI-HGLEKAL 193
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+F +R VR+ +IQ+ +YGTS+ L L + R +++ E+K L K++
Sbjct: 194 NDFADRVPTTAVRSFVLTIIQNLQYGTSVAQVLGDLSEDMRKVQILTVEEKVGKLSAKMS 253
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
+P+I+ + ++++I+ P I+ ++ M
Sbjct: 254 LPLILLIMFPIVVLILAPGIMQMMINM 280
>gi|146338119|ref|YP_001203167.1| putative pilus assembly protein membrane protein [Bradyrhizobium
sp. ORS278]
gi|146190925|emb|CAL74930.1| putative pilus assembly protein; putative membrane protein
[Bradyrhizobium sp. ORS278]
Length = 324
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/304 (16%), Positives = 117/304 (38%), Gaps = 27/304 (8%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
I + + + P L ++ R + K + Q + R + SL++
Sbjct: 16 IGGIAWVFIYPMLSGERKAEQ------RRSSVAKAEPVVRQVERNQRSRREQVESSLKDL 69
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
K ++ + + ++ AG ++++ I+ + F +
Sbjct: 70 EAKAQKQSKV---PLNIRISQAGL--DWTVQKFW-----------IISGVLGFVVCAVAF 113
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ +GA+ L G P + L ++R+ A PDA+D+++ +++G+ + ++
Sbjct: 114 FAGGGPLGALGLGFAAGLGLPRWILGYLKKRREKKFLAALPDAVDVIVRGIKAGLPLFES 173
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
++ VA PL E L I + A Y R + + +
Sbjct: 174 IKVVA---ADAPEPLRSEFLAIIETQAIGMPLGEACARLYERMPLPEANFFGIVIAIQQK 230
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--IIGPAILS 321
G ++ ++L L R + M + +A S+ K + +I P+++L+ + P +S
Sbjct: 231 SGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAGIIGSLPPIVMLLVYLSTPDYIS 290
Query: 322 IIDT 325
++ T
Sbjct: 291 LLWT 294
>gi|115351460|ref|YP_773299.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115281448|gb|ABI86965.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 337
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/274 (19%), Positives = 112/274 (40%), Gaps = 8/274 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLN 114
++ + ++ + L F + + ++V E L GF +
Sbjct: 66 RKEPAGRQAPGQPSRLAQMQARLSVFGMRWLDTGVGRLVVAEEDRLLLEQCGFVDTRTRG 125
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ L R+ I+ + + V + VGF P +++ K
Sbjct: 126 LFLSARIACSIVIPLA-----YIGVVGPHVSGTQWWLGVGISFIVGFMVPKLYLRRRAAK 180
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ ++ P +D+L + G+S+DQ+++ V D G LS EM + + +
Sbjct: 181 RRQAVTDELPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMMPVLSSEMEIAQRQFAAGRT 240
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R+ + + + + + +R + LIQ D++G ++ + L+ R R ++ L
Sbjct: 241 REQSLQRLSSGFENEDLRAIVRLLIQVDKHGGAVQEPLKQFGERLREARRAMLRERIGRL 300
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+T MI+ LP L++V GP ++S++ +
Sbjct: 301 TVKMTGVMIVTLLPALLIVTAGPGMISVLRALNQ 334
>gi|187923649|ref|YP_001895291.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187714843|gb|ACD16067.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 336
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 115/293 (39%), Gaps = 15/293 (5%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN----------LKAILVD 95
++V + T + A + R+ + +++ +V
Sbjct: 46 RAVQSAALAAAAARGTEGAQAGAKAAARSVPPTGFKGLLERFAHTGIRWLDTPFGRQVVA 105
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E L GF + + L+ RLV ++ +L + Y VI+
Sbjct: 106 EEDRRLLEQCGFVDTRTRGLFLLARLVGALVLPVLAGTLASTHLDGSRYG-----ALVIV 160
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
GF P + + KR+ ++ P +DLL + G+S+DQ+L+ V D G
Sbjct: 161 AVMAGFMLPKLVLRRRAGKRRHAVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGML 220
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+ E+ + + + R+ + + + +R + L+Q D +G ++ + L+
Sbjct: 221 PVLAGELEIAQRQFAAGRTREQSLNRLASSYDNEDLRAVVRLLVQVDLHGGAVQEPLKQF 280
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R R ++ L K+T MI+ LP L++V GP +L++ ++
Sbjct: 281 GDRLREARRAMLRERIGRLAVKMTGVMIVTLLPALMIVTAGPGVLAVQHSLGK 333
>gi|187251609|ref|YP_001876091.1| TadC subunit [Elusimicrobium minutum Pei191]
gi|186971769|gb|ACC98754.1| TadC subunit [Elusimicrobium minutum Pei191]
Length = 296
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 70/326 (21%), Positives = 136/326 (41%), Gaps = 40/326 (12%)
Query: 5 FFDLFDATELAVAITTA-VSIFSLIYAVVIP----SLGSGELEKRMKSVAVEREILRKQQ 59
FD L +++ ++F L+ + P S KRMK+
Sbjct: 1 MFDQMKEVGLMISLGAGSFAVFMLVMRLFAPEDAPLSVSDIEAKRMKA---------TSS 51
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+S+++D+ +L L+A +++ + + G + +L
Sbjct: 52 FSSIKQDTMWGKLCL------------YILEAFKLEKPLEEQHLLLGSPATPQPVTILYQ 99
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+++ + L+ ++ +GF P+ +++ +QKRQ +
Sbjct: 100 KILWA-------------ILLPILVLLVLKNFLFVIFIPLGFYIPTALVNSKIQKRQRDM 146
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +DL + +ESG+ A R+ ++ L EE+ + E+ +R+ A
Sbjct: 147 LGNFSTTVDLAALIIESGLDYMTAFDRIIRIAKEKT-VLEEELDKMLNEVKLGYSRREAL 205
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E NRT + +R+ +IQSD GTS+ D LR + R R+ +AEK AA K+
Sbjct: 206 ERLANRTGVQEIRSFVGLIIQSDELGTSLVDLLRNFSIDLRFRRMNKAEKLAAQASTKML 265
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDT 325
VP+ +F P + ++I+ P + II +
Sbjct: 266 VPLFLFIFPTVFILILAPMLKDIISS 291
>gi|330816719|ref|YP_004360424.1| Type II secretion system protein [Burkholderia gladioli BSR3]
gi|327369112|gb|AEA60468.1| Type II secretion system protein [Burkholderia gladioli BSR3]
Length = 329
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 122/308 (39%), Gaps = 6/308 (1%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL-RTRDSKSL 80
++I + L++R+++ +Q ++ AS ++ +
Sbjct: 24 MAILRSLLVQRSERTLLKALDQRVEAGRAAASRAGQQAQAKPRETPASGLAAWRTRAEQI 83
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
L LV + L G+ + + L R++ + + ++
Sbjct: 84 GMRWLDSGLGKQLVADEDRQFLEQCGYVEARARGLFLFSRVLCASVLPLAVLMISLVRGS 143
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + +GF P ++I R+ S+ P +D+L + G+S+
Sbjct: 144 GG-----KSLIYIAFAIAIGFMLPKLYIRRKAAARRESVAEEMPLFVDMLRLLQGVGLSL 198
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
DQ+++ ++ D LS E+ + + + R+ + + + +R+ + LIQ
Sbjct: 199 DQSMQVISHDFTTMLPVLSWELGVAQRQFAAGRTREQSLARLTSSFDNEDLRSIVRLLIQ 258
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
D++G ++ + LR+ R R ++ L K+T MI+ LP L++V GP I+
Sbjct: 259 VDKHGGAVQEPLRMFGDRLRDGRRALLRERIGRLTVKMTGVMIVTLLPALLIVTAGPGIM 318
Query: 321 SIIDTMKD 328
+++ +
Sbjct: 319 TVVSALSQ 326
>gi|300856045|ref|YP_003781029.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
gi|300436160|gb|ADK15927.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
Length = 306
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/284 (21%), Positives = 128/284 (45%), Gaps = 9/284 (3%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+K E L K + ++ + S R+ ++ + ++ +V + KL
Sbjct: 31 IKKRFTELNELDKLKEEEIENKTFSERMIMPFYENFSKVLLRITPHQKIVM--LNKKLER 88
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG ++ ++ + ++ +IF + + + ++ + IL+
Sbjct: 89 AGVLKNSTVQKWILKKSMIILIFSTILGVLVLMV----DFNIMKVIVFTILVVITINVFF 144
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++S +Q R++ I + P LDL+ + VE+G+S D A+ RV +I G L +E
Sbjct: 145 NFYLSRRIQNRKNKILKDLPYTLDLITVSVEAGLSFDGAIARVISNIRG---ELCDEFAK 201
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
++ E++ R+ A +N R + + +LIQ+D G S+ LR+ + R R
Sbjct: 202 SLKEITMGIERKAALKNMSERCDVKELSMFISSLIQADELGVSLSKVLRIESANLREHRR 261
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ +KA K+ P+I F P + ++I+GPA++ +I
Sbjct: 262 QVSREKAMKAPIKMLFPLIFFIFPTIFIIILGPAVIRMITIFAK 305
>gi|209551763|ref|YP_002283680.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537519|gb|ACI57454.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 335
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/298 (15%), Positives = 113/298 (37%), Gaps = 21/298 (7%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
++ + + + E R + + + S+ R +L++ ++K +
Sbjct: 26 LMYSRIEADKKSASRIDRVKSAESDRVKVKAARDRVQEMSKRRKSVQDNLKD-LEKRQHE 84
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ ++L AG ++ ++ + + L++ + +
Sbjct: 85 KTKKTLTMKSRLVQAGL--TITVGKFYIISAIFACVLLLMAFLIGVSL-----------M 131
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + G P + L+++RQ+ P+ALD++ ++SG+ ++ A+R +A
Sbjct: 132 VIIGIAVVAGLGLPRWIVGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIAT- 190
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ P+ E I + A + V + + G ++ +
Sbjct: 191 --EGTEPVKSEFRRVIEAQQVGLSIPDACARMTAHMPLQEVSFFAIVIAIQSQAGGNLSE 248
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
++ L R R M+A+ A S+ K + +II LP ++ ++ P+ + I+ T
Sbjct: 249 AIGNLSKVIRERRKMKAKVSALSMEAKASA-VIIGALPFIVATLVYLTSPSYMMILFT 305
>gi|27376546|ref|NP_768075.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349687|dbj|BAC46700.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 340
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/304 (17%), Positives = 113/304 (37%), Gaps = 26/304 (8%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
+ + + + P L K+ I R + Q + + R + SL++
Sbjct: 31 VGGIAWVFLYPLLSGER-----KAENRRASIARADAPAAKQTEKSQRSRREQVETSLKDL 85
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + + +L AG +++ +V VV + + + G
Sbjct: 86 EAR---RQQEKSVPLNIRLSQAGL--DWTPQKFWIVSAVVAGVLFVAAMFVGGGLLGGAG 140
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
F G P +S L ++R+S A PDA+D+++ +++G+ + ++
Sbjct: 141 LAFAGGFGL-----------PRWALSFLKKRRESKFLAALPDAVDVIVRGIKAGLPLFES 189
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
++ VA PL E L I + A Y+R + + +
Sbjct: 190 IKVVA---ADSPEPLRSEFLAIIETQAIGMPLGEACSRLYDRMPLPEANFFGIVISIQQK 246
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV--LILVIIGPAILS 321
G ++ ++L L R + M + +A S+ K + +I P+ ++ + P +S
Sbjct: 247 SGGNLSEALGNLSKVLRDRKKMREKIQAMSMEAKASAAIIGSLPPIVMFLVYLTTPHYIS 306
Query: 322 IIDT 325
++ T
Sbjct: 307 LLWT 310
>gi|312883759|ref|ZP_07743478.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368508|gb|EFP96041.1| Flp pilus assembly protein TadC [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 284
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/259 (20%), Positives = 114/259 (44%), Gaps = 6/259 (2%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R ++ + + + KL G+ S + +I + R I
Sbjct: 31 KIRLDRVARFSAEQASRGGVLRWATNPKRAQKLAMLGYVSSQADSIFMTARASAMTGVGI 90
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
++ + + + + I + V + I + PDALDL
Sbjct: 91 AWFFFLQLSFDIGGVAQGVVIALSLGIAI------DRVLDWRVNVVRQEIAKHIPDALDL 144
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+++CV SG +++ V +++ S LS E L+T E++ L + QVA N R +
Sbjct: 145 MVVCVSSGQNLEATFNTVGQEMKSISPSLSREWLVTSTEMAVLDSPQVALTNLDARLALP 204
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ N + Q+ ++G + ++L+++ S++R ++E E+ + K++ P+++F +
Sbjct: 205 EINNMIATMSQALKFGAPMAEALKLIASDSRQYHMLELEEWVGKIPAKMSFPLVVFIMLP 264
Query: 310 LILVIIGPAILSIIDTMKD 328
++++I+ P +LSI T+
Sbjct: 265 VVVIIVAPMVLSIFQTIGQ 283
>gi|312139259|ref|YP_004006595.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311888598|emb|CBH47910.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 296
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 134/311 (43%), Gaps = 21/311 (6%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ A V++ +R ++ + L S S +
Sbjct: 5 LVLMAALSVGGALGVLVWLTVGARDPERGPALRNLQSQLALPIPESGGAPPLSLGRFVKL 64
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L + AG + + + ++V+ +
Sbjct: 65 ------------LSPPGTMARLERLHILAGRPAAWVPERAAMAKIVLAAAAA------LL 106
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
G + P RV + + P + + + Q+RQ++I+ A D LD + I VE+
Sbjct: 107 GLLAVGASPGVGRVLFAAAAVALAYFVPELLLQSRGQERQAAIELALADTLDQMTIAVEA 166
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ + A++R A++ G PL+EE + T+ ++ +R++A+ + RT+ +R +
Sbjct: 167 GLGFEAAMQRAAKNGKG---PLAEEFIRTLQDIQMGQSRRIAYLDLAARTKAPNLRRFLR 223
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A+IQ+D YG +I + LR SE R +R AE+KA + K+ P++ LP + +VI+G
Sbjct: 224 AVIQADEYGVAIAEVLRTQASEMRLKRRQSAEEKAMKVPVKVLFPLMTCILPTIFIVILG 283
Query: 317 PAILSIIDTMK 327
PA++++++ +
Sbjct: 284 PAVINMMEVLG 294
>gi|237653361|ref|YP_002889675.1| type II secretion system protein [Thauera sp. MZ1T]
gi|237624608|gb|ACR01298.1| type II secretion system protein [Thauera sp. MZ1T]
Length = 301
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 67/294 (22%), Positives = 120/294 (40%), Gaps = 11/294 (3%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
+ L + ++A +R + T L RL ++ + + V L
Sbjct: 17 AVALLAGFGSAGIVAALARSVSAVRPEDRTWLDTPPRFLRLLWWPTRWIAHLVAPLLPAR 76
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ + +LR AG S LL R+ V + L G+ + P
Sbjct: 77 L--QARLAVRLRLAGLDYTLSPAQLLAHRVAVGLCGLAAGLGCAHAWALPPALPALAGAT 134
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A LI W+ + ++ R+ + + P LDL+ +CVE+G+++ AL++ A
Sbjct: 135 AGTLIA-------WSWLDDRIRCRRRLMLKQLPFVLDLITLCVEAGLNLTGALQQAAA-- 185
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G + PL EE+ + ++ +R A F +R + N +IQ++ G S+G
Sbjct: 186 KGPAGPLGEELHRVLRDVRAGKSRADALRGFADRIGEPAIANLVSTVIQAENMGMSLGPM 245
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
LR + R+ER AEK A K+ +P+I P +V+ P + +
Sbjct: 246 LRAQGEQRRAERFARAEKAAMEAPVKMLLPLIACIFPCTFIVLGFPIAVKFMTM 299
>gi|302381752|ref|YP_003817575.1| type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192380|gb|ADK99951.1| Type II secretion system F domain protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 326
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/313 (15%), Positives = 115/313 (36%), Gaps = 19/313 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I AV F I + +G + + A E + + +
Sbjct: 1 MLPILAAVLAFITIAGLGWVFVGGDDSSAQAIKRA-EGFTSGTVRTARAKAAKVEANTPE 59
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
K++ +K+ K + +L+ AG + ++ + ++ ++ +++
Sbjct: 60 ARRKAIELQLKEAERKERKARMTMKARLKHAGM--SMGIRTFWIISACLGVVAFLMPLVF 117
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
A+ + VG P + + ++R + +A+D+++ +
Sbjct: 118 GLNI-----------FVAIGIALVVGLGLPRWVVGFIGKRRLKKFSLEFANAVDVIVRGI 166
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+SG+ + + +A P+ E + L A E Y R +R
Sbjct: 167 KSGLPVHDCFKIIAR---ESPAPVGPEFQTLVEGLGVGLTLGQALEKMYERIPTPELRFF 223
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI--L 312
T + + G ++G++L L + R+ R+M + KA S + +I PV++ +
Sbjct: 224 TIVIAIQQKTGGNLGEALSNLTTVLRARRMMGEKIKALSSEATASAGIIGSLPPVVMTLV 283
Query: 313 VIIGPAILSIIDT 325
+ PA + ++ T
Sbjct: 284 GLTTPAYMGLMFT 296
>gi|218516696|ref|ZP_03513536.1| probable pilus assembly protein [Rhizobium etli 8C-3]
Length = 335
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/298 (15%), Positives = 113/298 (37%), Gaps = 21/298 (7%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
++ + + + E+ R + + + S+ R +L++ ++K +
Sbjct: 26 LMFSRFEADKKSASRINRVKSAEVDRVKVKAARDRVQELSKRRKSVQDNLKD-LEKRQHE 84
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
++ ++L AG S+ ++ V + L + + + +
Sbjct: 85 KTRKTLSMKSRLLQAGLPI--SVGKFYLISAVFASVLLFVAFVVGASW-----------M 131
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + G P + L+++RQ+ P+ALD++ ++SG+ ++ A+R +
Sbjct: 132 VMIGIAVVAGLGLPRWVLGFLIKRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGT- 190
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ P+ E I + A + V + + G ++ +
Sbjct: 191 --EGTEPVKSEFRRVIEAQQVGLSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSE 248
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
++ L R R M+A+ A S+ K + +II LP ++ ++ P + I+ T
Sbjct: 249 AIGNLSKVLRERRKMKAKVSALSMEAKASA-VIIGALPFIVATLVYLTSPNYMMILFT 305
>gi|90412171|ref|ZP_01220177.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum 3TCK]
gi|90326895|gb|EAS43280.1| hypothetical Flp pilus assembly protein TadC [Photobacterium
profundum 3TCK]
Length = 283
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 9/262 (3%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
++ S L + L + + +++ + AGF + + +
Sbjct: 25 EQAKQAHVESYLSAKKDGRLTRLNRFITRLGRNHQQDLEQQFVDAGFYNTQFAKYYVPAK 84
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + +I+ + + + + P + +S +
Sbjct: 85 LTL--------VIFTCVVVIISDLSLMNKAAISAVAMITILLVPEMVLSMRKKALILKTS 136
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P LD++ +CV++G++I+ AL ++ ++ L + T + A
Sbjct: 137 RQLPYMLDMMSVCVQTGMTIEAALTYLSIELEAFDKDLCFHIKKTADGARV-KGLEKALI 195
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R VR+ T LIQ+ +YGTSI + L L + R +++ E+K L K++V
Sbjct: 196 ELSERIPTPDVRSFTLTLIQNLQYGTSIANVLSALAEDMRKMQVLTMEEKIGKLAAKMSV 255
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
P+I+ + ++++I+ P ++ +
Sbjct: 256 PLILLIMFPIVILILAPGMMQM 277
>gi|308176986|ref|YP_003916392.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744449|emb|CBT75421.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 313
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/286 (17%), Positives = 105/286 (36%), Gaps = 6/286 (2%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+P R+ + S +S S L + + + +K+L
Sbjct: 26 LPGWRKMAFADRIAPHVRVGVRSSRMLEDSWHSESGYSAL-GQLAAPMLLQIKRLASLHS 84
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + +L AAG + S+ +V + L+ G ++ L V
Sbjct: 85 PSADTLRKRLDAAGL--DMSVIDYRSQEIVYALTGLVAGSAFMAFAAIQYRVSLVLSVLV 142
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V+ G +G+ W+ + +R I +P ++L + V +G S A+ R++
Sbjct: 143 VVGFGIIGYAMRGWWLGEQINRRARKILTQFPTVAEVLALTVGAGESTTGAIERISRIC- 201
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ +E T+ ++ A ++ +R Q+ + A++ + GT + L
Sbjct: 202 --HGVIGDEFTKTLNDIHAGTPMVQAMQHMSDRMQVGAMTRFVDAIVVATERGTPLAQVL 259
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
R + R E + A + VP++ LP+ I+ + P
Sbjct: 260 RDQAQDVRDASKRELMEVAGKREISMLVPVVFGILPLTIVFAVFPG 305
>gi|254506088|ref|ZP_05118232.1| bipartite nuclear localization signal containing protein [Vibrio
parahaemolyticus 16]
gi|219550906|gb|EED27887.1| bipartite nuclear localization signal containing protein [Vibrio
parahaemolyticus 16]
Length = 248
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 4/230 (1%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
++ I +K + AG S+ S + L + L + L I+I+ + P + A
Sbjct: 21 NQEINDKFKRAGISSK-SKWVALYMPLKYGALMLGCAAIYIYSIKSAISTPTLIAFMATW 79
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L + P + + R S + P LDLL +CV++G++I+ A+ +++++ G
Sbjct: 80 L--IICIVVPDALLDGRGKARVSRVSGQLPYLLDLLAVCVQTGMTIESAMNYLSKEMVGF 137
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
L+ + T Q A + Y +R+ L QS +YG+SI L
Sbjct: 138 DKELAGLLKKTNDRARL-VGMQKALDELYEDIPSSEMRSFVMTLKQSLQYGSSIYGVLTT 196
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
L + R +++ E+K L K++VP+I+F + ++++I P IL ++
Sbjct: 197 LAGDIRDVQMLTLEEKIGKLAAKMSVPLILFIMMPIVILIAAPGILRMMS 246
>gi|87199098|ref|YP_496355.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134779|gb|ABD25521.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 324
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 30/312 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+L + T + L YA + S E+ +R++SV ++ + + + ++R
Sbjct: 6 QLLLMSTGLMVAMVLGYAALSGPSASKEVNRRLQSVRFRHSESTLDKVEAQYRKTLAARK 65
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + E + +L G ++L+ L V + I+ +L
Sbjct: 66 PKTMRPA----------GSSSRLEALELRLHRTG--KGWTLSQYLYVSGGLAILIFLLVY 113
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + A+ ++G P + + + KR + PDALDLL+
Sbjct: 114 LRTGA-----------PLLALGSGIFIGGGLPHMLVGRAINKRIDNFVTRLPDALDLLVR 162
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ SG+ + + L VA ++ G P+ EE L + + A ++ +R +
Sbjct: 163 GLRSGLPVTETLGVVAAELPG---PVGEEFKLVTDRIKVGRTMEEALQDTADRLNLPEFN 219
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI- 311
L G ++ ++L L R M+ + KA S K + I+ LP ++
Sbjct: 220 FFCITLAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSSESKASA-YIVGALPFIVF 278
Query: 312 --LVIIGPAILS 321
+ I P L
Sbjct: 279 ALIYWINPVYLG 290
>gi|148258239|ref|YP_001242824.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
gi|146410412|gb|ABQ38918.1| putative pilus assembly protein [Bradyrhizobium sp. BTAi1]
Length = 324
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/304 (17%), Positives = 119/304 (39%), Gaps = 27/304 (8%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
I + + + P L ++ R + K + Q + R + SL++
Sbjct: 16 IGGIAWVFLYPMLSGERKAEQ------RRSSVAKSEPVVRQAERNQRSRREQVESSLKDL 69
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
K ++ + + ++ AG ++++ I+ + F +
Sbjct: 70 EAKAQKQSKV---PLNLRISQAGL--DWTVQKFW-----------IISGVLGFMAAAIAF 113
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ +GA+ L GF P ++ L ++R+ A PDA+D+++ +++G+ + ++
Sbjct: 114 FGGGGPLGALGLGFAAGFGLPRWILNFLKKRREKKFLAALPDAVDVIVRGIKAGLPLFES 173
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
++ VA PL E L I + A Y R + + +
Sbjct: 174 IKVVA---ADAPEPLRSEFLAIIETQAIGMPLGEACARLYERMPLPEANFFGIVVAIQQK 230
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--IIGPAILS 321
G ++ ++L L R + M + +A S+ K + +I P+++L+ + P +S
Sbjct: 231 SGGNLSEALGNLSKVLRDRKKMAEKIQAMSMEAKASAGIIGSLPPIVMLLVYLSTPDYIS 290
Query: 322 IIDT 325
++ T
Sbjct: 291 LLWT 294
>gi|149909167|ref|ZP_01897824.1| putative type IV pilus protein [Moritella sp. PE36]
gi|149807691|gb|EDM67637.1| putative type IV pilus protein [Moritella sp. PE36]
Length = 294
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 68/312 (21%), Positives = 145/312 (46%), Gaps = 22/312 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +++ AV++ + + G + + + + + ++ T L + ++S L
Sbjct: 1 MTLSLWIAVALLITGAVIALMFNGQAQRRELLLQRLTLVSVEQSRRFTHLPQAESTSSLW 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ V +I L AGF + L+ ++ V +I +
Sbjct: 61 ----------------PRLNVAPDISMLLVKAGFHGPRAGAYFLLSKISVMLISGLAWQW 104
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ + + ++ G W+ + I A PDALDL++IC
Sbjct: 105 YVDFDLD------KFVLAKTLVFAISGGLLAEHWLKWRARTVNYRIALALPDALDLMVIC 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VESG++++ +RV ++ S LS E L+T AEL L +R A N RT + V N
Sbjct: 159 VESGLTLEAVFQRVGHEMTAVSPELSREWLITEAELRLLDSRLTALNNLAKRTDLVEVEN 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
AL Q+++YG+ I ++R++ S++R + + E+K + K+++P+++ + ++++
Sbjct: 219 MVIALSQAEKYGSKIAPTMRLIASDSRQYQYLRLEEKVGKIPAKMSLPVVVLIMLPVVVL 278
Query: 314 IIGPAILSIIDT 325
I+ P I++++D+
Sbjct: 279 IVAPTIIALLDS 290
>gi|319791197|ref|YP_004152837.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315593660|gb|ADU34726.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 296
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/316 (20%), Positives = 128/316 (40%), Gaps = 23/316 (7%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ + +AI + +I + + SL R + T +
Sbjct: 1 MRSLILLAIIFLCATTGVILLLYMISLIRKA---------------RPSERTHMDPLPRM 45
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
RL L+ V ++ ++LV +L+ AG + V+ V +I
Sbjct: 46 LRLVWPVVNILQFHVSEIAPTSMLVKR--KRQLQLAGLEFVLKAEEFIAVQCVSMLIVAA 103
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG+ D ++ + G+ P +W+ + ++R+ I R P LD+
Sbjct: 104 LGLWTAGLLDATAG----TKIWVTLASCVTGWLYPVMWMRDRRKRREKDILRTLPGYLDM 159
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +C ++G+S+ A+ + + G L +E + E+ +R A +R
Sbjct: 160 ITLCCQAGLSLTGAIAQAVQKGPG--GALGQEFDRMMREMRTGASRMDALNALADRLDNK 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+++ L Q++ G S+ D+L + + R+ER AEK A K+ P++IF PV
Sbjct: 218 HIKSLVSNLTQAESLGASLADTLSAISDQRRTERFQMAEKLAMEAPVKMIGPLVIFIFPV 277
Query: 310 LILVIIGPAILSIIDT 325
++I P ++ ++T
Sbjct: 278 TFIIIFFPLVMQFLET 293
>gi|296134294|ref|YP_003641541.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032872|gb|ADG83640.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 320
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 53/310 (17%), Positives = 114/310 (36%), Gaps = 26/310 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ IF ++ L + +RM +E+ R + + + S + +
Sbjct: 4 LVLLLIFGTVFVFSYFVLMAVTARRRMLIARMEQYTKRIYEADNRARKPKESINLKKLFQ 63
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ + E I + G +++ ++ + IL I+ +
Sbjct: 64 KSSKIFAARSFAKTMEAELIKADIPLRG-------EEFVLINVLCVLGMGILAFIFTGNF 116
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ GF P + QKR + DAL ++ + +G
Sbjct: 117 ------------VLGWVGASAGFIVPKYVVKAAKQKRVARFNAQIGDALIIMANSLRAGF 164
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S QA+ V++++ P+S E + E++ + A +N NR + + + A+
Sbjct: 165 SFLQAMELVSKEM---PAPISVEFARALREMNLGTATEEALQNLCNRVESEDLDLVITAV 221
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVII 315
+ + G ++ L + R ++ E K + +++ MI+ LPV LIL +I
Sbjct: 222 LIQRQVGGNLSQILEGISHTIRERVRIKGEIKTLTAQGRISG-MIVGALPVGMGLILAVI 280
Query: 316 GPAILSIIDT 325
P + I+ +
Sbjct: 281 NPGYIGILFS 290
>gi|323495642|ref|ZP_08100713.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
gi|323319277|gb|EGA72217.1| type II secretion system protein F [Vibrio sinaloensis DSM 21326]
Length = 296
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 57/307 (18%), Positives = 117/307 (38%), Gaps = 19/307 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + + S+ VV+ L L KR + S + S
Sbjct: 7 LYVFLQLCSVFLGVVLFVLVMYRLVKR-------------KLFLSQLSLKSDSNRMAGFM 53
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ V K ++ I K + AG ++ + ++ +
Sbjct: 54 DFVSEKVAK--PAVESNNQEINEKFKRAGISTKSRWFSFYMPIKYGALLVGGVSFYIYAT 111
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + + P + + + R + I P LDLL +CV++G
Sbjct: 112 ASDMESASMIAGLATWL---ILCIILPDAILDSRGKARIARISAQLPYLLDLLAVCVQTG 168
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++I+ A+ +++++ G L+ + T Q A + Y +R+
Sbjct: 169 MTIESAMNYLSKEMIGFDKELAGLLKKTNERSRL-VGMQKALDELYEDIPSSEMRSFVMT 227
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L QS +YG+SI L L + R +++ E+K L K++VP+I+F + ++++I P
Sbjct: 228 LKQSLQYGSSIYGVLTTLAGDIRDVQMLGLEEKIGKLAAKMSVPLILFIMIPIVILIAAP 287
Query: 318 AILSIID 324
IL ++
Sbjct: 288 GILRMMS 294
>gi|327189775|gb|EGE56919.1| putative tadC pilus assembly protein [Rhizobium etli CNPAF512]
Length = 314
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 63/290 (21%), Positives = 126/290 (43%), Gaps = 5/290 (1%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ-KDSASSRLRTRDSKSLRNF 83
+ +AV+I S + EL R + V+V D+ + L +++ +R +
Sbjct: 9 LIVFFAVLIFSAAASELFFRQREVSVRVSKSSAAAGDEFHLGDTTIADLGEAENRLIRRY 68
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + + N+L AG+ + ++ VVR V + +L
Sbjct: 69 FE--ITRRDTNANSTQNRLIRAGYFAAGAVTTFQVVRAV--VCISVLVGAVWAANRIAPN 124
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + F +++I ++ +R +PD +D+L++C+++G+SI+ A
Sbjct: 125 MSQMATLILGMFAAGATFILVNIYIDRRGAAKEREYRRLFPDFMDMLIVCLDAGMSIEAA 184
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
RVA + + + + + E+ + A N R ++D R + QS+
Sbjct: 185 ANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRIDEARALSVLFRQSEE 244
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
GTS+ +LRV E R R++ AE+KA +L K+ +P+ F PV + +
Sbjct: 245 LGTSVTQTLRVYSKEMRDIRVVRAEEKANALPVKMLLPLGAFLFPVSLFI 294
>gi|167845808|ref|ZP_02471316.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei B7210]
gi|167894380|ref|ZP_02481782.1| bacterial type II secretion system protein F domain [Burkholderia
pseudomallei 7894]
Length = 237
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 1/238 (0%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ +L +AGFR +++++ ++LVV + + ++ +Y LRV
Sbjct: 1 DATQRMKLAARLASAGFREHRAVSVMAGLKLVVGACAGLAALALGAHVPRVGDY-VVLRV 59
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ +G P + ++ +RQ +I PDALDLL+IC +G S+ A+RRVA +
Sbjct: 60 LMMAGAFVIGMMLPEHALGFVLARRQKTIAAYLPDALDLLVICTNAGNSLAVAIRRVASE 119
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ PL++E + EL + A R + +R L+QS +YGT I
Sbjct: 120 LKTICPPLADEFSVCADELQIGGDAAFALNAMAARIGLPSMRALVTTLVQSQQYGTPITQ 179
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
SLR+L R+ +++ E+KAA L PK+T+PM++F +P + L+ GPA++ +I
Sbjct: 180 SLRMLSRTERAMQMIALEEKAAKLAPKMTLPMMLFVMPTVALIAAGPAVIRLIAVFHK 237
>gi|85859133|ref|YP_461335.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
gi|85722224|gb|ABC77167.1| flp pilus assembly protein [Syntrophus aciditrophicus SB]
Length = 327
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/321 (15%), Positives = 114/321 (35%), Gaps = 29/321 (9%)
Query: 10 DATELAVAITTAVSIFSLIYA-VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + +S+ +++ V + S + +KR+ ++ + +Q L D
Sbjct: 1 MDMDFLPFVIIFISVVAVVEGFVFLISWRTNPEKKRI----NQQLKMLSRQKEQLAYDDF 56
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+TR+ S+ + L+ I + A S+
Sbjct: 57 DITRKTRELSSVPWLNE--LLQKIPRLLPTDRLIEQARAPYTMSVY-------------- 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
IL + +F L+ + + G P +++ R PDALD
Sbjct: 101 ILAALLLFFVGTLIFHALTKTFLVAVPAGLAMSYLPFLFLIMKKNSRMKKFDAQLPDALD 160
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ- 247
L+ +++G + ++ VA++ P+ E + E +F + A N NR
Sbjct: 161 LMARALKAGHAFPGGIQMVAKEFDD---PIGIEFAKVVEETNFGVGVEEALRNLANRFDS 217
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ A++ G ++ + L + R + + S +L+ +I+ +
Sbjct: 218 SSDLKFFAIAVMIQRESGGNLAEILESIARIIRERFKLMGTIRTLSAEGRLSA-IILVAI 276
Query: 308 PVLILV---IIGPAILSIIDT 325
P + I+ P ++++ T
Sbjct: 277 PFFVAFALSIMNPQYITVLAT 297
>gi|218461009|ref|ZP_03501100.1| probable pilus assembly protein [Rhizobium etli Kim 5]
gi|218662450|ref|ZP_03518380.1| probable pilus assembly protein [Rhizobium etli IE4771]
Length = 335
Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 47/276 (17%), Positives = 109/276 (39%), Gaps = 21/276 (7%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E+ R + + + S+ R +L++ ++K + ++ ++L AG S
Sbjct: 48 EVDRVKVKAARDRVQELSKRRKSVQDNLKD-LEKRQHEKTRKTLSMKSRLLQAGLPI--S 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ ++ + + LI+ I + + + + G P + L+
Sbjct: 105 VGKFYLISAIFASVLLIVAFIVGASW-----------MVMIGIAVVAGLGLPRWVLGFLI 153
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ+ P+ALD++ ++SG+ ++ A+R + + P+ E I
Sbjct: 154 KRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGT---EGTEPVKSEFRRIIEAQQVG 210
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + V + + G ++ +++ L R R M+A+ A
Sbjct: 211 LSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSAL 270
Query: 293 SLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
S+ K + +II LP ++ ++ P + I+ T
Sbjct: 271 SMEAKASA-VIIGALPFIVATLVYLTSPNYMMILFT 305
>gi|144897440|emb|CAM74304.1| Flp pilus assembly protein TadC [Magnetospirillum gryphiswaldense
MSR-1]
Length = 199
Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 73/151 (48%), Positives = 109/151 (72%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++ R +PDALDL++ICVE+G+S++ AL +V +++ + L+EE+ LT AEL+FL +R+
Sbjct: 49 QALARGFPDALDLMVICVEAGLSVEAALLKVTDEMANSAPELAEEIGLTAAELAFLGDRR 108
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A++N RT + V++ + AL+QS++YGT + +LRVL E R R+ AEKKAASL
Sbjct: 109 QAWDNLAERTGLAQVKSLSTALVQSEKYGTPVAQALRVLSQENRETRMAAAEKKAASLPA 168
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
KLTVPMI+FFLPVL +VI GPA + ++ K
Sbjct: 169 KLTVPMIVFFLPVLFIVIAGPAAIQVMAAWK 199
>gi|170724975|ref|YP_001759001.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810322|gb|ACA84906.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 281
Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/254 (19%), Positives = 104/254 (40%), Gaps = 9/254 (3%)
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L T L K + E + + AGF + ++ + ++ +
Sbjct: 34 QRYLETSQESGLEKLSKLVVRVGQEKREELEQQFIEAGFYDTRFARFYVPAKIGLALVII 93
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L +I + +V + + P ++ + R P LD
Sbjct: 94 LLIVI--------SDMTLSNKVMIGAVAMVMTLIVPDSILAMRKKMLVKKTSRQLPYMLD 145
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +CV++G++++ AL +AE++ L + T + A R
Sbjct: 146 MMSVCVQTGMTVEAALAYLAEELKAFDKDLCFHIKKTADTSRI-TGLEKALLELSERIPT 204
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
VR+ + LIQ+ +YGTSI + L L + R +++ E+ L K++VP+I+F +
Sbjct: 205 PEVRSFSLTLIQNIQYGTSIANVLADLAEDMRQMQVLAMEESIGKLAAKMSVPLILFIMF 264
Query: 309 VLILVIIGPAILSI 322
++++I+ P + +
Sbjct: 265 PIVVLILAPGFMQL 278
>gi|163851907|ref|YP_001639950.1| type II secretion system protein [Methylobacterium extorquens PA1]
gi|163663512|gb|ABY30879.1| type II secretion system protein [Methylobacterium extorquens PA1]
Length = 323
Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 55/297 (18%), Positives = 110/297 (37%), Gaps = 28/297 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AV+ SL Y ++P+L R R++ + Q A
Sbjct: 8 LTVGLVAVAAGSLAYVFLMPALSG-----------ERRAEQRRKALGQPQAVLAERGAAA 56
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + +K+L K + +L AG ++S VV + ++ + +
Sbjct: 57 SRREQVAKSLKELEAKKDKTKVTLELRLARAGL--DWSRQKYRVVSAITAVVLALAAFLV 114
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ A + + GF P+ W+ ++R + P+A+D+++ +
Sbjct: 115 SHNV-----------IVAGLALFVGGFGLPAWWLKRRQKRRVEAFIEELPNAMDVVVRGL 163
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SGI + LR +A PL E +T+ + + A Y R + V
Sbjct: 164 RSGIPLGDCLRMIAR---EAKEPLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFF 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + G ++ ++L L R + M + +A S+ K + II LP ++
Sbjct: 221 SIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALPFVV 276
>gi|332284566|ref|YP_004416477.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
gi|330428519|gb|AEC19853.1| hypothetical protein PT7_1313 [Pusillimonas sp. T7-7]
Length = 291
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 2/205 (0%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ + + FL L + + + + + G +G P W+ L ++RQ
Sbjct: 85 IVAMQFMGFLALLLASVLVLQTSGDARLAHILLPCLGAGLIGMLWPRYWLHGLARQRQFQ 144
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ R +P LD+ +CVE+G+++ AL++ A+ PL E+ +A++ R A
Sbjct: 145 MLREFPFLLDMTTLCVEAGLNLHGALQQAAQHGPD--GPLRGELRHALADMRAGVPRIQA 202
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ +R + V++ AL Q+D+ G S+G LR + R+ER + AEK A K+
Sbjct: 203 LQELADRCGLPAVQSLVTALAQADQLGMSLGPLLRSQSEQRRAERFLRAEKLALEAPVKM 262
Query: 299 TVPMIIFFLPVLILVIIGPAILSII 323
PM+ P L+I P ++ ++
Sbjct: 263 LFPMVFCIFPCTFLIIGFPIVIKLL 287
>gi|170696831|ref|ZP_02887931.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170138259|gb|EDT06487.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 372
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 53/271 (19%), Positives = 115/271 (42%), Gaps = 6/271 (2%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ ++++ L R + + ++ ++ +V + L GF + +
Sbjct: 104 RGTSANVKRARGMKGLLERCADAGTRWLD-TSVGRQVVAQEDRRLLEQCGFVDARARGLF 162
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L+ R+ I+ ++ + Y V VI+ G AP + + R+
Sbjct: 163 LMARIAGAIMLPLVAGPIAHAHVDGPRY-----VLVVIVAFMCGVMAPKLVLRRRAAARR 217
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++ P +DLL + G+S+DQ+L+ + D G L+ E+ + + + R+
Sbjct: 218 GAVVDELPMLVDLLRLLQGVGLSLDQSLQVMVNDFRGVLPVLASELEIAQGQFAAGRTRE 277
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ + + +R + LIQ DR+G ++ + L+ R R ++ +
Sbjct: 278 QSLSRLASSFDNEDLRAVVRLLIQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRMAV 337
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+T MI+ LP L++V GP ++S+ ++K
Sbjct: 338 KMTGVMILTLLPALMIVTAGPGVMSVSHSLK 368
>gi|116249985|ref|YP_765823.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254633|emb|CAK05707.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 335
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/276 (17%), Positives = 110/276 (39%), Gaps = 21/276 (7%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E R + + + S+ R +L++ ++K + ++ ++L AG +
Sbjct: 48 ESDRVKVKAARDRVQELSKRRKSVQDNLKD-LEKRQHEKTKKTVSMKSRLVQAGL--TIT 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ V + L++ ++ + + + G P + L+
Sbjct: 105 AAKFYLISAVFASVLLLIALVVGASL-----------MVMIGIAVVAGLGLPRWVVGFLI 153
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ+ +P+ALD++ ++SG+ ++ A+R +A + P+ E L I
Sbjct: 154 KRRQTKFLNEFPNALDVITRSIKSGLPLNDAIRLIAT---EGTEPVKSEFLRVIEAQQVG 210
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + V + + G ++ +++ L R R M+A+ A
Sbjct: 211 LSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSAL 270
Query: 293 SLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
S+ K + +II LP ++ ++ P + I+ T
Sbjct: 271 SMEAKASA-VIIGALPFIVATLVYMTSPNYMMILFT 305
>gi|297581613|ref|ZP_06943535.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
gi|297534020|gb|EFH72859.1| flp pilus assembly protein TadC [Vibrio cholerae RC385]
Length = 305
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 134/299 (44%), Gaps = 3/299 (1%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
+ I S L + + + Q ++ + + ++ +
Sbjct: 10 LLIAIVSFVGLLLVGMLLWRDQQMQTQWLAQSLRYRQLHLTDTMTENGTRHWLAVLGGYY 69
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+ + + L AG S+ +L+ + +L++ ++ +L + W + +L +
Sbjct: 70 PTSDTEKKRLTQMLEQAGIYSKDALDKVRGAKLLLGLLTAMLALGWQWSKGELF---TAM 126
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ +G P + ++ + ++ DA+DL++I +E+G+S+D+AL RV
Sbjct: 127 TLTMALVGYVLGSNLPEYGLRRQSKQAKQRQQQIVADAMDLMVISIEAGLSLDRALERVG 186
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ L+++ L T AE+ L + + + RT + + L + RYG+ +
Sbjct: 187 HYLLDVEPMLAKQFLRTHAEIQVLGDTALCMKKLAWRTGLQELERCAATLAMAQRYGSPL 246
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+++R + + R R M +++A L ++T+ + F + L+++II P + ++++++
Sbjct: 247 AETMRNISQDARQMRKMALQEQAGKLPGRITLIQMAFIMLPLLVLIIAPTLNVLLESLR 305
>gi|190889885|ref|YP_001976427.1| pilus assembly protein [Rhizobium etli CIAT 652]
gi|190695164|gb|ACE89249.1| probable pilus assembly protein [Rhizobium etli CIAT 652]
gi|327194690|gb|EGE61536.1| putative pilus assembly protein [Rhizobium etli CNPAF512]
Length = 335
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 108/276 (39%), Gaps = 21/276 (7%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E+ R + + + S+ R +L++ ++K + ++ ++L AG S
Sbjct: 48 EVDRVKVKAARDRVQELSKRRKSVQDNLKD-LEKRQHEKTRKTLSMKSRLLQAGLPI--S 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ ++ V + L + + + + + + G P + L+
Sbjct: 105 VGKFYLISAVFASVLLFVAFVVGASW-----------MVMIGIAVVAGLGLPRWVLGFLI 153
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ+ P+ALD++ ++SG+ ++ A+R + + P+ E I
Sbjct: 154 KRRQNKFLNELPNALDVITRSIKSGLPLNDAIRLIGT---EGTEPVKSEFRRVIEAQQVG 210
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + V + + G ++ +++ L R R M+A+ A
Sbjct: 211 LSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSAL 270
Query: 293 SLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
S+ K + +II LP ++ ++ P + I+ T
Sbjct: 271 SMEAKASA-VIIGALPFIVATLVYLTSPNYMMILFT 305
>gi|307293453|ref|ZP_07573299.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306881519|gb|EFN12735.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 332
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/307 (19%), Positives = 121/307 (39%), Gaps = 26/307 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + +A+ + + A PS ++RM+ + + + + +
Sbjct: 1 MNGNLILMAVLLTTMLGLIAMAFAGPSPDKAR-KRRMELIRGRHSDSADAILEARMRKAI 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S+R +S L + V EN+ ++R G +++++ + V+ ++
Sbjct: 60 SNRPTGAESTMLVSLV--------PNPENLAKRIRMTG--KKWTVSQYMTSCAVIFLVLC 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L ++ F + AV+L G P +W+S L+ KR +PDAL+
Sbjct: 110 ALLMLRGFA-----------PLFAVMLGLAAGLGLPHMWVSRLINKRVQQFTAKFPDALE 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + SG+ I + L V+ ++ G P+ EE L + A + +R
Sbjct: 159 LLTRGLRSGLPIAETLGVVSSEVPG---PVGEEFKLITERIKIGKTMDQALQETADRLGT 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +L G ++ ++L L + R M+ + +A S K + II LP
Sbjct: 216 AEFQFFVISLAIQRETGGNLAETLSNLATVLRQRSQMKLKIRAMSSESKASA-YIIGVLP 274
Query: 309 VLILVII 315
+ +I
Sbjct: 275 FTVFGLI 281
>gi|91783015|ref|YP_558221.1| putative tight adherence TadC related transmembrane protein
[Burkholderia xenovorans LB400]
gi|91686969|gb|ABE30169.1| Putative tight adherence TadC related transmembrane protein
[Burkholderia xenovorans LB400]
Length = 337
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 6/270 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
++ T + L R + + ++ +V E L GF + + L
Sbjct: 70 KRATRHAPPTGLKGLLERFAHTGIRWLD-TPFGRQIVAEEDRRLLEQCGFVDTRTRGLFL 128
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V RL ++ +L + ++ V VI+ GF P + KR++
Sbjct: 129 VARLAGAMVLPVLAGMLT-----RGQFEGSRYVALVIIAAMAGFMLPKFVLRRRAGKRRN 183
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ P +DLL + G+S+DQ+L+ V D G L+ E+ + + + R+
Sbjct: 184 GVVDELPLLVDLLRLLQGVGLSLDQSLQVVVNDFRGMLPVLAGELEIAQRQFTAGRTREQ 243
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + +R + L+Q DR+G ++ + L+ R R ++ L K
Sbjct: 244 SLNRLATSYDNEDLRAVMRLLVQVDRHGGAVQEPLKQFGDRLRETRRAMLRERIGRLAVK 303
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+T MI+ LP L++V GP +L++ ++
Sbjct: 304 MTGVMIVTLLPALMIVTAGPGVLAVQHSLG 333
>gi|194288829|ref|YP_002004736.1| tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
gi|193222664|emb|CAQ68667.1| Tad secretion system, secretion accessory protein [Cupriavidus
taiwanensis LMG 19424]
Length = 325
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 54/319 (16%), Positives = 115/319 (36%), Gaps = 30/319 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDS 67
A I V++ + + + G KR+++ LR
Sbjct: 1 MSTIFYAFGILLFVAVVLCVEGIYLWWNNAHGPAAKRIEA------RLRALSAGGHVGAE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R + L + + L +G S +S+ L +V +
Sbjct: 55 QLSILKKRLLADSPRLQQW--LMRVPRIGALDRWLEQSG--STWSVAQLFGYCALVVLCT 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ L + L V+L + P + + +L KR ++ PDA+
Sbjct: 111 VALIPLL------------PLPASLVMLGAVLAAMLPVLHVVHLRAKRLKQLEAQLPDAV 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + +G S AL V +++ P+ E T E+++ A N R
Sbjct: 159 DMISRALRAGHSFSGALSMVGQEMK---APIGPEFRTTFEEINYGVALDEAMTNLAMRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + + R + + + S KL+ ++ L
Sbjct: 216 VADLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEGKLSA-WVLGLL 274
Query: 308 PV---LILVIIGPAILSII 323
P ++++I P ++++
Sbjct: 275 PFGTAGMILVINPGFMNVL 293
>gi|240139030|ref|YP_002963505.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
gi|240009002|gb|ACS40228.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens AM1]
Length = 323
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 55/297 (18%), Positives = 112/297 (37%), Gaps = 28/297 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AV+ SL Y ++P+L R R++ + Q A
Sbjct: 8 LAVGLVAVAAGSLAYVFLMPALSG-----------ERRAEQRRKALGQPQAVLAERGAAA 56
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + +K+L K + +L AG ++S VV ++ ++ ++ +
Sbjct: 57 SRREQVAKSLKELEAKKDKTKVTLELRLARAGL--DWSRQKYRVVSVITAVVLALVAFLA 114
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ A + + GF P+ W+ ++R + P+A+D+++ +
Sbjct: 115 SHNV-----------IVAGLALFVGGFGLPAWWLKRRQKRRVEAFIEELPNAMDVVVRGL 163
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SGI + LR +A PL E +T+ + + A Y R + V
Sbjct: 164 RSGIPLGDCLRMIAR---EAKEPLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFF 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + G ++ ++L L R + M + +A S+ K + II LP ++
Sbjct: 221 SIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALPFVV 276
>gi|148974880|ref|ZP_01811860.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
gi|145965389|gb|EDK30638.1| Flp pilus assembly protein TadC [Vibrionales bacterium SWAT-3]
Length = 288
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 131/309 (42%), Gaps = 29/309 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ VS+ Y + +E R + E R
Sbjct: 8 IWGVIFVVSMVLATYCLRFWDNTRANIETRRIIGSTREEKKR------------------ 49
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ + +++ + KL AAGF S++ + ++++V I LIL
Sbjct: 50 --TDLFKSILSRISFNK----DETKRKLVAAGFYSDFLADAYYLLKIVPFSICLILIGFD 103
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + + +GA++ P ++S + I P LDL+ +CV
Sbjct: 104 FYSGETEVLFSLLYLLGALLAFVIA----PDAYVSARGKANIKHISSRLPFLLDLMNVCV 159
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G++I+ +L +A+++ L+ + +T+ + A E FY ++
Sbjct: 160 HTGMTIESSLEYLAKELHSIDSNLAHVVRVTVERSRL-VGLEKALEEFYALVPTSESQSF 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++QS ++G+S+G L L ++ R +M+ E++ +G K+++P+I F + ++++I
Sbjct: 219 VMTMVQSLQFGSSVGPVLATLATDIRELNMMDLEERIGKMGAKMSIPLIAFIMVPIVVLI 278
Query: 315 IGPAILSII 323
P IL ++
Sbjct: 279 AAPGILRML 287
>gi|323525750|ref|YP_004227903.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323382752|gb|ADX54843.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 367
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 5/240 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
++ +V E L GF + + L+ R+ I+ ++ + + Y
Sbjct: 129 SVGRQVVAEEDRRLLEQCGFVDARARGLFLIARVAGAIVLPLVAGALGHAHVEGPRY--- 185
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V VI+ G AP V + R+ ++ P +DLL + G+S+DQ+L+ +
Sbjct: 186 --VLVVIVAFVCGVMAPKVVLRRRAAARRGAVVDELPMLVDLLRLLQGVGLSLDQSLQVM 243
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D G LS E+ + + + R+ + + + + +R + LIQ DR+G +
Sbjct: 244 VNDFRGVLPVLSSELDIAQRQFAAGRTREQSLSRLASSFENEDLRAVVRLLIQVDRHGGA 303
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + L+ R R ++ + K+T MI+ LP L++V GP +LS+ ++K
Sbjct: 304 VQEPLKQFGDRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVLSVSHSLK 363
>gi|299532823|ref|ZP_07046210.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719047|gb|EFI60017.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 311
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 8/291 (2%)
Query: 37 GSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDE 96
E ++ A+ R + A L +L LV +
Sbjct: 25 QRRERSSQVVQDALSRSGAAAANEAATPARPADLLRSLNGDGELPAHWLNTSLGKALVAQ 84
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
L G+ S + L+ R VV ++ ++L G + + +
Sbjct: 85 EDRILLGKCGWGSTRAQLQYLIARCVVSVLLVLLAAFVFSGSKQF--------LLYLFAA 136
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+GF P + ++ +R++S+ R P +DLL + +G+S+DQ L+ + D G
Sbjct: 137 FAIGFLLPKWVLRSVAGRRRASVARELPLLVDLLGLLQGTGMSLDQTLQVIGSDFGNVMP 196
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS E+ L + S R+ +F Q D + N T +IQ DRYG ++ + LR+
Sbjct: 197 VLSREIKLANQQYSRGSTRERSFGRMSEVYQNDNLANLTSLMIQIDRYGGAVQEPLRIFG 256
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R +R + ++ + K+T M++ LP LI++ GP L++I +
Sbjct: 257 ERLREQRKAKMKELIGKISVKMTAVMVVTLLPALIIITAGPGFLAVIRALG 307
>gi|296284555|ref|ZP_06862553.1| hypothetical protein CbatJ_13051 [Citromicrobium bathyomarinum
JL354]
Length = 323
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 53/318 (16%), Positives = 117/318 (36%), Gaps = 28/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D +L + ++ L+ A + +L++R+ V ++ S K +
Sbjct: 1 MDVIQLFILSLGFLAAIGLVAAALAGPSTRKQLQRRLSGVRTRHTDDANARVESQMKKAL 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++R + + + +L+A G + + L V I +
Sbjct: 61 AARKPKIQKAA----------GNGSRSQALALRLQATGMGWTVKQYVYASIGLAVMIGMI 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + I +G P + + +++R + +PDA+D
Sbjct: 111 VYA-------------QTGVPLLSAIAGLLIGAGVPHMAVGFFMKRRTAQFNARFPDAID 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL+ + SG+ + + L VA++I G P+ E I + + + A + +R +
Sbjct: 158 LLVRGLRSGLPVTETLAVVAQEIPG---PVGIEFKGIIERIKIGRSMEEAMQESADRLGI 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFF 306
AL G ++ ++L L R M+ + KA S K + ++ + F
Sbjct: 215 AEFNFFVIALAIQRETGGNLAETLSNLSDVLRKRAQMKLKIKAMSSESKASAYIVGSLPF 274
Query: 307 LPVLILVIIGPAILSIID 324
L ++ + P+ L
Sbjct: 275 LVFAMIWWVNPSYLGAFF 292
>gi|309792340|ref|ZP_07686810.1| type II secretion system protein [Oscillochloris trichoides DG6]
gi|308225655|gb|EFO79413.1| type II secretion system protein [Oscillochloris trichoides DG6]
Length = 325
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 14/241 (5%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+ +I L A + ++ + V+L+ ++ L++G+
Sbjct: 65 VSKSKQGGDITRDLARADL--KLTVAEFMGVKLIAAVVGLLVGMYV-------GRANQAA 115
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
GA ++ + AP+++++ +KR S D + ++ + G S Q L VA
Sbjct: 116 MFGAGLVGAVIFSFAPNIYLNMRAKKRIKSFNDQLGDTITMMANALRGGFSFLQTLDMVA 175
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
P+S E + E+ + A ++ R + + A+ G ++
Sbjct: 176 R---DAPAPMSGEFRRVVQEVGLGRTTEEALQSLLRRMPSEDLDLLITAVNIQMEVGGNL 232
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDTM 326
L + R ++ E + + +++ +I + + + +I P + I +
Sbjct: 233 AQILDTIGHTIRERVRIKGEIQTLTAQGRISGWVITGLPIGLAIFITMINPEYMMPIFSF 292
Query: 327 K 327
Sbjct: 293 G 293
>gi|299067811|emb|CBJ39022.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum CMR15]
Length = 325
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 51/320 (15%), Positives = 115/320 (35%), Gaps = 25/320 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + ++ V+I + R ++ L+ + S D
Sbjct: 1 MNTLMIGFLLSVFVAIALGVLGTYQWWSTH-----RSQTARRLSHRLQTALLNSASHDKE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S L+ R F + L+ + + + L +G ++S+ LL + L ++
Sbjct: 56 ASILKQRVLSDSPEFAQ--LLQRLPRIDVVDRFLLQSGL--DWSVGRLLGLSLASAVLAG 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + + L G P +++ KR ++ P+A D
Sbjct: 112 GLVSLLHPLWVAQLSITLM------------GASLPLLYVLRCRAKRLLRLEEQLPEAAD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G S+ AL ++ P+ E+ L +E+++ A +R +
Sbjct: 160 LLSRALRAGHSLPSALDMAGSEL---PAPIGAELALVFSEINYGVPMGDALTGLTDRVPI 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + A++ G ++ + L + S R + + + S ++ I+ LP
Sbjct: 217 EDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEGRM-GGWILTLLP 275
Query: 309 VLILVIIGPAILSIIDTMKD 328
++ VI+ +I T+
Sbjct: 276 PVVGVIVYELNPDLISTLWK 295
>gi|300741822|ref|ZP_07071843.1| putative type II secretion system protein F domain protein [Rothia
dentocariosa M567]
gi|300381007|gb|EFJ77569.1| putative type II secretion system protein F domain protein [Rothia
dentocariosa M567]
Length = 310
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 45/307 (14%), Positives = 103/307 (33%), Gaps = 5/307 (1%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
A+ + ++ A + +R+ I + ++
Sbjct: 1 MNFAIIFGLFFAFGVMLIASSLRKRRGPNFGERIAPQMRSVSIRESLHRENQASGTSVLD 60
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + DE + +LR AG S+ +++ +++ + + L
Sbjct: 61 ALYSFLEPMMQSFLGRVRSTESRDEALAARLRRAG--SDQTVSAFRAEQILWAVSSVALL 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + +IL G GF A W+ ++ +R+ + +P +++
Sbjct: 119 GVLSVIGLLENQLSLWSGLMLIILGGVTGFLARDWWLGQIIVRREKQLIAEFPALAEMMA 178
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ V +G + AL + L+ E +A+ + A F TQ+ +
Sbjct: 179 LSVAAG---ESALASLERICRTSRGELAREFNDILAQTRAGSSLLAALNEFAQSTQIPAL 235
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + GT + D LR + R E + A + P++ LP+ +
Sbjct: 236 SRFVDGVAVAIERGTPLADVLRAQAQDVRDNAKRELLEVAGKKEIAMLAPVVFLILPLTV 295
Query: 312 LVIIGPA 318
+ I P
Sbjct: 296 VFAIFPG 302
>gi|222111305|ref|YP_002553569.1| type II secretion system protein [Acidovorax ebreus TPSY]
gi|221730749|gb|ACM33569.1| type II secretion system protein [Acidovorax ebreus TPSY]
Length = 288
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 10/224 (4%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
LR AG + ++V + +LG++ + + +++I + F
Sbjct: 73 LRRAGQDYALTPRQFFAGKVVSAVAGALLGVMLSGMLEG--------GLSIIVVIAMLAF 124
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P +W+ ++R +I +A P +DLL + +E+G+++ A+++ G PL E
Sbjct: 125 FYPDLWLKETTKQRNLAILKALPFFIDLLTLSIEAGLNLSGAMQQAVAKSAG--GPLMVE 182
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ + ++ R A +F R + + AL+Q ++ G+S+G LR + R+
Sbjct: 183 INRVLRDVRAGKARIDALRDFSARLDFTPITSFVSALVQGEKTGSSLGPILRAQAEQRRT 242
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
ER + AEK A K+ P+I F P +VI P + + +
Sbjct: 243 ERFLRAEKLAMEAPVKMLGPLIFFIFPCTFIVIGFPIAMKFLAS 286
>gi|186474107|ref|YP_001861449.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184196439|gb|ACC74403.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 326
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 26/309 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
D T LA A+ V+I LI + + G + KRM + +R
Sbjct: 1 MDTTLLAFAVLGFVAIVLLIEGLYVFWNSRHGPVVKRMDA------RIRAMSAGGHVSGE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R F + L + + L+ +G +S+ +
Sbjct: 55 QMSILKQRLLSESPTFTR--VLMRVPRVHLLDLYLQQSGLP--WSVGRFVGYSAASA--- 107
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
FG +L V + + P V++ + KR ++R PDA
Sbjct: 108 --------FGGLLFGMGGMRLPVVLALPVAGGAALLPLVYLRSRRAKRVVQLERLLPDAA 159
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S AL VA+++ PL E + E++ + A N +R
Sbjct: 160 DLIARALRAGHSFPAALGMVADEL---PQPLGGEFRIAFDEINCGVSMNDALMNLVSRVP 216
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D VR A++ G ++ + L + + R + A+ + S +L+ I+ L
Sbjct: 217 VDDVRYFVIAVLIQREAGGNLAEILGNIATIIRERLKLLAKVRVLSAEGRLSA-WILGLL 275
Query: 308 PVLILVIIG 316
P +++ +
Sbjct: 276 PFIVIAALS 284
>gi|156741662|ref|YP_001431791.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156232990|gb|ABU57773.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 327
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 104/320 (32%), Gaps = 32/320 (10%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D T V I ++ + S G+ E+R+ A R ++
Sbjct: 6 DLTRFIAPAAIFVVILAVFALLARRSAGNASYEERLTQFAGRRTDQLQRSA--------- 56
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + V + L A + ++ ++L+ +
Sbjct: 57 ----KDQLREIDKVVAR-----GKRGSETQRNLARADL--KLTVTEFYAIKLLAAAV--- 102
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ ++ ++ + I+ + P +++ ++R + D +++
Sbjct: 103 ----GAAVGAFIGRASWEAQLLSGIVGFALFSFFPDLYVGYAAKQRVTKFNAQLGDTINM 158
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + SG S+ Q++ V+ P + E + E+ + A +N R +
Sbjct: 159 LANSLRSGYSLLQSMELVSR---EAPEPTASEYRRVVQEVGLGLRTEDALDNLLKRVPSE 215
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
+ A+ G ++ L + R ++ E + +++ +I +
Sbjct: 216 DLDLLITAVKIQMESGGNLAQILDTIGHTIRERIRIKGEIAVLTAQGRISAYVITGLPIG 275
Query: 308 PVLILVIIGPAILSIIDTMK 327
+ + +I P +S + +
Sbjct: 276 LAIFITVINPNYMSPMFSFG 295
>gi|241207161|ref|YP_002978257.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861051|gb|ACS58718.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 335
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/276 (17%), Positives = 110/276 (39%), Gaps = 21/276 (7%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E R + + + S+ R +L++ ++K + ++ +L AG +
Sbjct: 48 ESDRVKVKAARDRVQELSKRRKSVQDNLKD-LEKRQHEKTKKTVSMKARLVQAGL--TIT 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ V + L++ ++ + + V + G P + L+
Sbjct: 105 AAKFYLISAVFASMLLLVALVVGASW-----------MVMVGIAVVAGLGLPRWVVGFLI 153
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ+ P+ALD++ ++SG+ ++ A+R +A + P+ E L I
Sbjct: 154 KRRQTKFLNELPNALDVITRSIKSGLPLNDAIRLIAT---EGTEPVKSEFLRVIEAQQVG 210
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + V + + G ++ +++ L R R M+A+ +A
Sbjct: 211 LSIPDACARMTIHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVQAL 270
Query: 293 SLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
S+ K + +II LP ++ ++ P + I+ T
Sbjct: 271 SMEAKASA-VIIGALPFIVATLVYMTSPNYMMILFT 305
>gi|114568974|ref|YP_755654.1| type II secretion system protein [Maricaulis maris MCS10]
gi|114339436|gb|ABI64716.1| type II secretion system protein [Maricaulis maris MCS10]
Length = 327
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/287 (17%), Positives = 109/287 (37%), Gaps = 23/287 (8%)
Query: 42 EKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK 101
+KRM + R ++ TS +A R R + +++ +I +
Sbjct: 31 KKRMNRAVGTGGLQRGRRQTSALDQAAQ---RKRQVQESLKDLEQRQRDQRKKSLSIKAR 87
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
++ AG ++ + +V + L++ I Q + + G
Sbjct: 88 IQQAGM--SFTPAVFWMVSAGMAAAGLLIAFI-----------TGQSLLVTAGIGLVSGL 134
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P W+ L +RQ + +ALD++ V+SG+ +++ L+ ++ P+ E
Sbjct: 135 GMPRWWLGFLRGRRQKQFSGEFANALDVITRGVKSGLPLNECLKILS---VESPEPVKTE 191
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ ++ + + R + + LI + G ++ ++L L RS
Sbjct: 192 FAKLVEGIAVGVSLPDGLDRMCERMPLPELNFFRTVLIIQQKTGGNLAETLGNLSVVLRS 251
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
++M + A S K + II LP ++ I+ P+ + + T
Sbjct: 252 RKMMREKIGALSSEAKSSAA-IIGSLPPGVMGIVYATTPSYMGQMFT 297
>gi|303241938|ref|ZP_07328431.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590493|gb|EFL60248.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 289
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 10/241 (4%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L E + L A + S+ +L ++ +I L I + GY +
Sbjct: 58 RLMGNEYQEKMRIMLLQADMEN-VSVETVLFTSIIASVIAATLFSIILTGYGNI------ 110
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L V I + GF P +I V KR+ + ++LL ++G++ + A+ R+
Sbjct: 111 LAVFGFIAGAFTGFKIPEAYIKRKVDKRKDILNATILYYVELLSTACQAGLNTENAIERI 170
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A++ + L++E+ E R+ A ++ R + VR +++ Q GT
Sbjct: 171 ADN---TNSILADEIKRIWKESYKTKTREEAIQDMIQRCGTNEVRLFMESVGQGLEMGTP 227
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ D L+ RS E KK K+ PMI+F LP ++LV + PA+++++ ++
Sbjct: 228 VTDILKDQARSIRSRAKSEIVKKGELAKVKIVFPMILFLLPSVLLVALTPALITLMKIIQ 287
Query: 328 D 328
+
Sbjct: 288 E 288
>gi|311111713|ref|YP_003982935.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943207|gb|ADP39501.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 310
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/307 (14%), Positives = 103/307 (33%), Gaps = 5/307 (1%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
A+ + ++ A + +R+ I + ++
Sbjct: 1 MNFAIIFGLFFAFGVMLIASSLRKRRGPNFGERIAPQMRSVSIRESLHRENQVSGTSVLD 60
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + DE + +LR AG S+ +++ +++ + + L
Sbjct: 61 ALYSFLEPMMQSFLGRVRSTESRDEALAARLRRAG--SDQTVSAFRAEQILWAVSSVALL 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + +IL G GF A W+ ++ +R+ + +P +++
Sbjct: 119 GVLSVIGLLENQLSLWSGLMLIILGGVTGFLARDWWLGQIIVRREKQLIAEFPALAEMMA 178
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ V +G + AL + L+ E +A+ + A F TQ+ +
Sbjct: 179 LSVAAG---ESALASLERICRTSRGELAREFNDILAQTRAGSSLLAALNEFAQSTQIPAL 235
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + GT + D LR + R E + A + P++ LP+ +
Sbjct: 236 SRFVDGVAVAIERGTPLADVLRAQAQDVRDNAKRELLEVAGKKEIAMLAPVVFLILPLTV 295
Query: 312 LVIIGPA 318
+ I P
Sbjct: 296 VFAIFPG 302
>gi|296158517|ref|ZP_06841347.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891085|gb|EFG70873.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 293
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 3/267 (1%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL-RAAGFRSEYSLN 114
R + KSLR +N + KL + +
Sbjct: 22 RSLNGLAGAVPEEDRLFLDPLPKSLRPLWPLVNFVVHHFGNSFSAKLVEKTDLQLRLTSL 81
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
L+ + +I ++ L+ V +IL+ +G+ P +W ++ ++
Sbjct: 82 TFLMNARQFIALSIIASVLASLVVLVLMLALGMFSVLVLILVAALGYIYPRIWTRDVRRR 141
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R I R P LD L + VE+G++I+ A+++ E G PL E+ + +L N
Sbjct: 142 RVGQILRHLPIYLDFLTLAVEAGLNINGAIQKSVE--KGPEGPLRRELEHVLRDLKSGLN 199
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R A +R ++ V N ++Q++R G+ + SLR + RSER AEK+A
Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILS 321
KL P+++F P+ +V+ P ++
Sbjct: 260 PVKLVFPLLMFIFPITFIVLGFPIVMK 286
>gi|86355868|ref|YP_467760.1| pilus assembly protein [Rhizobium etli CFN 42]
gi|86279970|gb|ABC89033.1| probable pilus assembly protein [Rhizobium etli CFN 42]
Length = 335
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/276 (17%), Positives = 109/276 (39%), Gaps = 21/276 (7%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E+ R + + + S+ R +L++ K+ N + ++ ++L AG +
Sbjct: 48 EVDRAKVKAARDRVQEMSKRRKSVQDNLKDLEKRQN-EKTKKTLSMKSRLVQAGL--TVT 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + + + L + I + + + + G P I L+
Sbjct: 105 LTQFYLFSAIFASVLLFMAFIIGASW-----------LVMIGIAFVAGLGLPRWVIGFLI 153
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ+ +P+ALD++ ++SG+ ++ A+R +A + P+ E I
Sbjct: 154 KRRQNKFLNEFPNALDVITRSIKSGLPLNDAIRLIAT---EGTEPVKSEFRRVIEAQQVG 210
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + V + + G ++ +++ L R R M+A+ A
Sbjct: 211 LSIPDACARMTLHMPLQEVNFFAIVIAIQSQAGGNLSEAIGNLSKVLRERRKMKAKVSAL 270
Query: 293 SLGPKLTVPMIIFFLPVLILVII---GPAILSIIDT 325
S+ K + +II LP ++ ++ P + ++ T
Sbjct: 271 SMEAKASA-VIIGALPFIVATLVYLTSPNYMIVLFT 305
>gi|254561625|ref|YP_003068720.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
gi|254268903|emb|CAX24864.1| Pilus assembly protein, type II secretion protein [Methylobacterium
extorquens DM4]
Length = 323
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/297 (18%), Positives = 109/297 (36%), Gaps = 28/297 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AV+ SL Y ++P+L R R++ + + A
Sbjct: 8 LAVGLVAVAAGSLAYVFLMPALSG-----------ERRAEQRRKALGQPKAVLAERGAAA 56
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + +K+L K + +L AG ++S VV + ++ +
Sbjct: 57 SRREQVAKSLKELEAKKDKTKVTLELRLARAGL--DWSRQKYRVVSAITAVVLALAAFFV 114
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ A + + GF P+ W+ ++R + P+A+D+++ +
Sbjct: 115 SHNV-----------IVAGLALFVGGFGLPAWWLKRRQRRRVEAFIEELPNAMDVVVRGL 163
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SGI + LR +A PL E +T+ + + A Y R + V
Sbjct: 164 RSGIPLGDCLRMIAR---EAKEPLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFF 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + G ++ ++L L R + M + +A S+ K + II LP ++
Sbjct: 221 SIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALPFVV 276
>gi|149909542|ref|ZP_01898196.1| bipartite nuclear localization signal containing protein, similarto
TadC [Moritella sp. PE36]
gi|149807447|gb|EDM67398.1| bipartite nuclear localization signal containing protein, similarto
TadC [Moritella sp. PE36]
Length = 296
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 109/249 (43%), Gaps = 5/249 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L + L+ + I K AAGF ++ + V+ +V I
Sbjct: 50 ESKGFLERLSELLSKAFTSNQDEIKMKFIAAGFYQFKYASLFMPVKYLVLFSGGIG---- 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
++ + + + + + + P ++ ++ I P LDL+ +CV
Sbjct: 106 LYFLSESMAFESASLIAIIASWLVLIIILPDAVLNLRAKQLTEKISNKLPYLLDLMAVCV 165
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G++++ A+ +++++ L+ ++ T +A + Y R + +R+
Sbjct: 166 QTGMTLESAISYLSKEMTEFDKDLTNVLVKTNDRARI-VGLAMALDELYLRVPSNEMRSF 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L QS ++G+SI L L + R +++ E+K L K+++P+I+F + ++++I
Sbjct: 225 VMTLKQSLQFGSSISQVLTTLSGDIRQVQILGLEEKIGKLAAKMSIPLIVFIMVPVVILI 284
Query: 315 IGPAILSII 323
P I+ ++
Sbjct: 285 AAPGIMRMM 293
>gi|255327037|ref|ZP_05368113.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
gi|255296254|gb|EET75595.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
Length = 310
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/307 (16%), Positives = 111/307 (36%), Gaps = 5/307 (1%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L + ++ + + + S R+ S + +++ +
Sbjct: 1 MNLPLIFGLLLAAGVGLILSSVLNTRSISFSDRVASQLRGETLRESLLKEQERREPSLLE 60
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ L + + L D ++ +LR AG S S++ +L+ + + +
Sbjct: 61 AISAFCAPLLRSLSSSLSGSSLSDSSVQERLRRAG--SSQSVSAFRAEQLLWALAGVTVM 118
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + V++ G GF A W+ V KR+ + +P +++
Sbjct: 119 SALTVIGVVQERFSILVALMLVLVSGLSGFLARDWWLGEAVTKREKQLVAEFPALAEMMA 178
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ V +G S AL R+ L+ E +A+ + A + F RT++ +
Sbjct: 179 LSVTAGESALAALERIC---LTSRGELAREFSEILAQTRTGVSLLSALQEFAERTRVPAL 235
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + GT + D LR + R E + A + P++ F LP+ +
Sbjct: 236 SRFVEGIAVAIERGTPLADVLRAQAQDVRDNAKRELMETAGKKEIAMLAPVVFFILPLTV 295
Query: 312 LVIIGPA 318
+ + P
Sbjct: 296 IFAVFPG 302
>gi|307726638|ref|YP_003909851.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587163|gb|ADN60560.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 293
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 2/215 (0%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + L+ + +I +I + V ++ +G+ P +
Sbjct: 74 LQLRLTSLTFLMNAHQFIALSVIGAVIAALLALLAMLALGVFFVPVLLGAALLGYFYPRI 133
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W ++ ++R + I + LD L + VE+G++I+ A+++ E G + PL E+ +
Sbjct: 134 WTRDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVE--KGPAGPLRWELEHVL 191
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+L NR A +R ++ V N A++Q++R G + SLR + RSER
Sbjct: 192 RDLKSGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQRRSERFQR 251
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
AEKKA KL P+++F P+ +V+ P +
Sbjct: 252 AEKKAMEAPVKLVFPLLVFIFPITFIVLGFPIAMK 286
>gi|78486064|ref|YP_391989.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
gi|78364350|gb|ABB42315.1| Flp (type IV) pilus assembly protein, TadB homolog [Thiomicrospira
crunogena XCL-2]
Length = 296
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 117/313 (37%), Gaps = 17/313 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + +F +V+ + + +E LR + Q + +
Sbjct: 1 MVWVLLAVAILFFTATLLVVKTFKKNQ----QAQEDIEYLKLRIGLVNQYQANVNRHKTC 56
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ K L AGFR E+ L ++ + L++ ++
Sbjct: 57 HWC-----ALGAFMGPKNEKEINANRQFLMNAGFREEHHLGAYFFIKYALVFSSLLVMLV 111
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
FQ+ IL+ P + R + + A PD LD+ IC
Sbjct: 112 L--------WSWFQVSPIVAILVPLAFLLLPERVLIFWGNHRLNKVNIALPDFLDMANIC 163
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G+S +A++RV++++ + E I ++ RQ A + F R +++
Sbjct: 164 MSAGLSYLEAIKRVSKELESTFPEICYEFNFLIEQIKIGVPRQEALKQFALRNPSKDIQD 223
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
Q LIQ+++ G+ I +L +R E+KAA K+ + ++ F + ++
Sbjct: 224 LVQMLIQNEKLGSPISTALNEFSRRMYQKRESAMEEKAAKTSAKMAIVILPFLMLPYFML 283
Query: 314 IIGPAILSIIDTM 326
++G I+ +
Sbjct: 284 MLGEKIVMLGRNF 296
>gi|91777214|ref|YP_552422.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689874|gb|ABE33072.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 293
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 3/267 (1%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL-RAAGFRSEYSLN 114
R + KSLR +N + KL + +
Sbjct: 22 RSLNGLAGAVPEEDRLFLDPLPKSLRPLWPLVNFVVHHFGNSFSAKLVEKTDLQLRLTSL 81
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
L+ + +I I+ L+ V +IL+ +G+ P +W ++ ++
Sbjct: 82 TFLMNARQFIALSIIASILASLVTLLLMLALGMFSVLILILVAALGYFYPRIWTRDVRRR 141
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R + I R P LD L + VE+G++I+ A+++ E G PL E+ + +L N
Sbjct: 142 RVAQILRHLPIYLDFLTLAVEAGLNINGAIQKAVE--KGPEGPLRRELEHVLRDLKSGLN 199
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R A +R ++ V N ++Q++R G+ + SLR + RSER AEK+A
Sbjct: 200 RTEALRRLDDRLRIKEVTNLVGTVVQAERMGSGLAKSLRFQSEQRRSERFQRAEKQAMEA 259
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILS 321
KL P++ F P+ +V+ P +
Sbjct: 260 PVKLVFPLLFFIFPITFIVLGFPIAMK 286
>gi|325963896|ref|YP_004241802.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469983|gb|ADX73668.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 313
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 104/308 (33%), Gaps = 6/308 (1%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AV + + + P + + L +R++ + + + + Q + L
Sbjct: 8 AVISGFVMGVGLWLIVFRSPLMRATTLTERIEPQLKSQNLESRLLNSGEQNLTPFGPLER 67
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R+ + L +L AG S +L+ +
Sbjct: 68 ILRPVFRDAMAALGKLN-PSPGATTRRLAQAGI--NKSSLEFRAEQLLWAAAGFAAALGV 124
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L AV+ GF W+ V++R++ + +P +L+ + V
Sbjct: 125 TAIGAAAGRVNPLLAAVAVMGSAVGGFILRDYWLGAQVKRRETRMMAEFPSLAELMALAV 184
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S AL RV LS E +AE A + F RT + +
Sbjct: 185 SAGESATGALDRVCR---SAKGELSREFSNILAETRAGKPLVQALQEFSARTDLAPLVRF 241
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++ + GT + D LR + R + + A + VP++ LP+ ++
Sbjct: 242 VDGIVVAVERGTPLADVLRAQAQDVRDTAKRDLMEAAGKKEIAMMVPLVFGVLPLTVVFA 301
Query: 315 IGPAILSI 322
+ P + +I
Sbjct: 302 VFPGLAAI 309
>gi|193213110|ref|YP_001999063.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
gi|193086587|gb|ACF11863.1| type II secretion system protein [Chlorobaculum parvum NCIB 8327]
Length = 322
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/318 (16%), Positives = 122/318 (38%), Gaps = 35/318 (11%)
Query: 12 TELAVAITTAVSIFSLI---YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T ++ ++ ++ Y V + KR + +++ + Q S+ + +
Sbjct: 2 TTFLISFFAFAAVILIVLFAYGVWVNFFDPSNKAKRKRLKSIKSAVQWGGQSPSIAQINQ 61
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ +S + + N L A RS +S LL + V I+ +
Sbjct: 62 NDSDLEIWLRSHYRVFVR-----------LENLLHRA--RSPFSALRLLGIMSAVFILVV 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG++ + ++ +P +W+S KR+ + P+ALD
Sbjct: 109 MLGLLV------------HTNPIVLFVLAVAFASSPLLWLSRQANKRRQAFSEKLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + +G S+ A+ V ++ G P+ +E + E+SF + A + +R +
Sbjct: 157 YVTRSLRAGHSLTSAIGIVGKEFPG---PIGQEFKIVFDEISFGIPFKEAMDRLADRVES 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +L G ++ + L L R + + + S +++ +++ +P
Sbjct: 214 VDLNFFVISLEIQHETGGNLTELLEGLAKTIRERFKLRGKVRTLSAEGRISA-LVLGSMP 272
Query: 309 VL---ILVIIGPAILSII 323
+ IL +I P S++
Sbjct: 273 FILTAILTVINPEYTSVL 290
>gi|261251593|ref|ZP_05944167.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
gi|260938466|gb|EEX94454.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
Length = 284
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/257 (22%), Positives = 115/257 (44%), Gaps = 6/257 (2%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R ++ V + + + KL G+ S + +I + R I ++
Sbjct: 33 RLDRVARFGAVQVSRGGILRWARNPKRAQKLAMFGYVSSQAESIFMTARASAMTIAGVVW 92
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + V I I + V + I + PDALDL++
Sbjct: 93 FYSQQLSVDVGGFAQCVVVALSIGIVI------DRALDWRVNVVRQEIAKNIPDALDLMV 146
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+CV SG S++ V +++ S LS E L+T E++ L + QVA N R + V
Sbjct: 147 VCVSSGQSLEATFNTVGQEMKSISPSLSREWLVTATEMAVLDSPQVALTNLDTRLALPEV 206
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
N + Q+ ++GT + D+L+++ S+ R ++E E+ + K++ P+++ + ++
Sbjct: 207 NNMIVTMSQALKFGTPMADALKLIASDNRQYHMLELEEWVGKIPAKMSFPLVVLIMLPVV 266
Query: 312 LVIIGPAILSIIDTMKD 328
++I+ P +LS+ T+
Sbjct: 267 VIIVAPMVLSLFQTLGQ 283
>gi|294139875|ref|YP_003555853.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
gi|293326344|dbj|BAJ01075.1| Flp pilus assembly protein TadC [Shewanella violacea DSS12]
Length = 293
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/273 (24%), Positives = 136/273 (49%), Gaps = 6/273 (2%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
+ +Q + +N I V ++I L AGF S+++ ++
Sbjct: 26 KARQRDGVVARLQLVERGAIAFSKPQNNNNNQLKSKIRVSDDIKALLLRAGFYSDHAASL 85
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+V +L+V I I + + ++ + ++ +G W+ +
Sbjct: 86 FVVAKLLVAISCFIGWMAYSGFSLD------KIILAKGVVFAVIGGIGVEHWVKFRARLV 139
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
S I A PDALDL+++CVESG++++ RV +++ S LS E L+T AEL L +R
Sbjct: 140 SSRIAGATPDALDLMVVCVESGLTLEAVFGRVGQEMVNFSPELSREWLITEAELRLLDSR 199
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A +N RT + + N AL Q+++YG+ I S+R++ S++R + + E+K +
Sbjct: 200 PQALKNLALRTGIIEIENMVIALSQAEKYGSPIAKSMRLIASDSRQHQYLALEEKVGKIP 259
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K+++P+++ + ++++I+ P I+ ++ ++ +
Sbjct: 260 AKMSMPLVVLVMIPVVVLIVAPTIIELMTSIGE 292
>gi|283457757|ref|YP_003362345.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
gi|283133760|dbj|BAI64525.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
Length = 310
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/303 (17%), Positives = 112/303 (36%), Gaps = 8/303 (2%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + +++ S+ + VA + ++ ++D L S
Sbjct: 5 LIFGLLLATGVGLILSSVLNTRSISFSDRVASQLRGETLRESLLKEQDRREPSLLEAISA 64
Query: 79 S---LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L + + L D ++ +LR AG S S++ +L+ + + +
Sbjct: 65 FCAPLLRSLSSSLSGSSLSDSSVQERLRRAG--SSQSVSAFRAEQLLWALAGVTVMSALT 122
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + V++ G GF A W+ V KR+ + +P +++ + V
Sbjct: 123 VIGVVQERFSILVALVLVLVSGLSGFLARDWWLGEAVTKREKQLVAEFPALAEMMALSVT 182
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S AL R+ L+ E +A+ + A + F RT++ +
Sbjct: 183 AGESALAALERIC---LTSRGELAREFSEILAQTRTGVSLLSALQEFAERTRVPALSRFV 239
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + + GT + D LR + R E + A + P++ F LP+ ++ +
Sbjct: 240 EGIAVAIERGTPLADVLRAQAQDVRDNAKRELMETAGKKEIAMLAPVVFFILPLTVIFAV 299
Query: 316 GPA 318
P
Sbjct: 300 FPG 302
>gi|221633001|ref|YP_002522226.1| type II secretion system protein F domain [Thermomicrobium roseum
DSM 5159]
gi|221156079|gb|ACM05206.1| Bacterial type II secretion system protein F domain
[Thermomicrobium roseum DSM 5159]
Length = 323
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/316 (17%), Positives = 121/316 (38%), Gaps = 30/316 (9%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+F L +A++ A + L+ A + L+ R++ A + ++ ++ +
Sbjct: 1 MFGDPLLLIAVSLAGAAVMLVLAGLHARSRGHSLDHRLEQFA--------RSESAPEEVT 52
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
A L R ++ E I L A R ++ L +R +V ++
Sbjct: 53 AGPHLLARQLDR--------AVRGRPFAEAIRMSLARADIR--LTVGEFLFLRGLVTLLA 102
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++G + G + L + ++ G+ AP ++ + R D +
Sbjct: 103 FVIGFLLGRGITQ-----PLLGLFTGLVFAVSGWLAPHYYVLWRGRHRLQRFVNQLGDTI 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L+ + +G S+ Q + VA + P+SEE + E+ Q A ++ R
Sbjct: 158 GLMANSLRAGYSLLQTMDLVAR---ESAPPMSEEFRRVVREVGLGVPLQDALDHLLERIP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A+ + G ++ L ++ R ++ E + + L+ II L
Sbjct: 215 SEDLDLLVTAIAINHEVGGNLAQILEIIGETIRERVRIKGEIRVLTAQQSLSG-YIISLL 273
Query: 308 PV---LILVIIGPAIL 320
PV +++ ++ P+ L
Sbjct: 274 PVGLAILIFLLNPSYL 289
>gi|317124421|ref|YP_004098533.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315588509|gb|ADU47806.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 314
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 109/312 (34%), Gaps = 8/312 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
A+ A+ + +P LE+R+ + + + + + L
Sbjct: 10 AAVGVAMLAGLSLIGAGLPWRRRATLEQRLAPYLRDAPMPSRLLGSGPSTLTIFG-LGDL 68
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ LR+ + +L AG ++ L +++ LG++
Sbjct: 69 LAPYLRSLGAGFERVLGGGPSVVRRQL-RAGRGAD--LERFRAEQVLWATGGAALGLLGS 125
Query: 136 FGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + V ++ VG +S ++R+ + +P +LL + V
Sbjct: 126 GVLAVSKRSFSVPMLVLLTVIGVAVGAVLRDYSLSRAARRREQRMLAEFPTVAELLALAV 185
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G AL RV L++E+ +A+ N A + +RT + +
Sbjct: 186 SAGEGATGALERVCRL---SDGELADELRRCLADARAGANLPTALQGLADRTGLPSLSRF 242
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++ + GT + D LR + R + ++ + VP++ LPV +L
Sbjct: 243 VDGIVVAVERGTPLADVLRAQAQDVREDGRRVLMEQGGKREIVMMVPVVFLILPVTVLFA 302
Query: 315 IGPAILSIIDTM 326
I P + + +
Sbjct: 303 IYPGLSFLRFEL 314
>gi|75674495|ref|YP_316916.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
gi|74419365|gb|ABA03564.1| type II secretion system protein [Nitrobacter winogradskyi Nb-255]
Length = 324
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 120/320 (37%), Gaps = 29/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+A A ++ + + + P L + EKR ++A +R+ +
Sbjct: 1 MNLQTLALAFMAATAVGGVAWVFLYPVLSGEMKAEKRRAALARTSPAIRQVDRAQRSRRE 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ + + N++ AG +S L+V ++ +
Sbjct: 61 QIEESLREIEQR----------QKRDRKVTLNNRIAQAGL--SWSKEKFLIVSGILALAS 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ I+ G F G P + L ++R+++ RA PDA+
Sbjct: 109 FAVPIVLGAGPLAAAGLAFAAGFGV-----------PRWLLGFLKKRRETAFLRALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + ++L+ VA PL E I + A Y R
Sbjct: 158 DVIVRGIKAGLPLFESLKVVA---ADSPEPLKSEFAAIIETQAIGMPLGEACSRLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + KA S+ K + +I
Sbjct: 215 VPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVSMEAKASAAIIGSLP 274
Query: 308 PVLILV--IIGPAILSIIDT 325
P+++L+ + P ++++ T
Sbjct: 275 PIVMLLVYLSTPDYIALLWT 294
>gi|254420696|ref|ZP_05034420.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
gi|196186873|gb|EDX81849.1| Bacterial type II secretion system protein F domain [Brevundimonas
sp. BAL3]
Length = 326
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 121/314 (38%), Gaps = 23/314 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ A+ ++I L + V SG+ KR +++ + K + + ++ +R +
Sbjct: 4 ILAAVLAFITIGGLGWVFVGGDDSSGQAVKRAQNLGEGKRNAAKARKAAAAANTPEARRK 63
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +++ + N+ KL+ AG S+ +V V +I + +
Sbjct: 64 QIMVQ-----LQEAERRERKARANMAAKLKQAGL--TISVRTFYIVSGGVGLIAAVAALA 116
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + L VG P + L + R +P+A+D+++
Sbjct: 117 FGL-----------HVLIVLGLAIVVGLGLPRWIVGFLAKARMKKFSLEFPNAVDVIVRG 165
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ + + + +A PL + L + A + + + +R
Sbjct: 166 IKSGLPVHECFKIIAR---ESPAPLGPAFKKLVEALGVGMTLEQALDKMFEQMPTPELRF 222
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T + + G ++ ++L L + R+ R+M + KA S + +I P ++ +
Sbjct: 223 FTIVIAIQQKTGGNLAEALSNLSTVLRARRMMREKVKALSSEALASAGIIASLPPAVMTM 282
Query: 314 II--GPAILSIIDT 325
++ P + + T
Sbjct: 283 VMFTSPGYMMALFT 296
>gi|307730002|ref|YP_003907226.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307584537|gb|ADN57935.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 353
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 5/239 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+ V L GF + + L+ R+ ++ + + Y
Sbjct: 116 VGRQFVAHEDRRLLEQCGFVDARARGLFLIARVAGAVVLPLAAGTLAHAQVQGPRY---- 171
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V AVI+ G AP V + R++++ P +DLL + G+S+DQ+L+ +
Sbjct: 172 -VLAVIVAFVCGVMAPKVVLRRRAAARRAAVVDELPMLVDLLRLLQGVGLSLDQSLQVMV 230
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
D G LS E+ + + + R+ + + + +R + LIQ DR+G ++
Sbjct: 231 NDFRGVLPVLSGELEIAQRQFAAGRTREQSLARLASSFDNEDLRAVVRLLIQVDRHGGAV 290
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ L+ R R ++ + K+T MI+ LP L++V GP +LS+ ++K
Sbjct: 291 QEPLKQFGDRLRETRRAMLRERIGRMAVKMTGVMILTLLPALMIVTAGPGVLSVSHSLK 349
>gi|282865305|ref|ZP_06274357.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282559778|gb|EFB65328.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 295
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/305 (20%), Positives = 120/305 (39%), Gaps = 26/305 (8%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
EL +A ++++ + + + ++ A L + + +
Sbjct: 1 MELLIAAVFGLAVYGAFHGIRMY-----------RAEAELPGDLAVALEVGASRTTVTGS 49
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R V ++ + + KL AG +++ R V + I
Sbjct: 50 AIDRMGMRYAPRVLRMMGPK--RVDKVRRKLDMAGNPGGMTVDRYAARRAVYTGLGGIAA 107
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + +L G G+ V I + + +R+ I R PD LD+L
Sbjct: 108 LSMLMNGQT----------VLAVLFGVYGYFWTDVIIRSAISRRKDDIDRTLPDFLDVLA 157
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ V +G+ QAL RVAE S P ++E+ +T+ ++ +R+ AF+ R + + V
Sbjct: 158 VVVSAGLGFRQALERVAEKY---SGPWADELRITLRQMDMGVSRREAFDQLRKRNESEQV 214
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
AL Q + G I D+L + ++ R A +KAA PK T+ + F LP +
Sbjct: 215 SMFVSALQQGEELGAPIVDTLIQIANDMRRTDAQNARRKAAKAVPKATLIVTSFMLPGTM 274
Query: 312 LVIIG 316
++I
Sbjct: 275 ILIAV 279
>gi|116671473|ref|YP_832406.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611582|gb|ABK04306.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 292
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/280 (23%), Positives = 131/280 (46%), Gaps = 11/280 (3%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ +R+ Q + AS + L ++L + + L AG
Sbjct: 24 IVADRKSRLVIQGNLSKGLEASGAATAPQNMDLERMARRLTPSGY--EAKLDRLLALAGR 81
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
S L LLV + + ++ +L ++ + + + + + P +
Sbjct: 82 PSSMPLPRLLVAKPALALVVAVLMMLML------SRNGSAQMILLAVFATGLAYFVPDLL 135
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I + Q+RQ I+ P+ LD +LI VE+G+ + A+ R ++ G PL+EE++ T+
Sbjct: 136 IYSRGQERQKKIQLELPNTLDQMLIAVEAGLGFESAMARAGQNGKG---PLAEELIRTLQ 192
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ +R+ ++ R+ + +R +A++Q+D YG +I L+ E R +R A
Sbjct: 193 DMQVGRSRRDSYLALAERSNVQDLRTFVRAVVQADTYGIAIAKVLKAQAKEMRVKRRQRA 252
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
E+KA L + P+++F PV+ +VI+GPA+++II+
Sbjct: 253 EQKAMKLPVLVLFPLLLFIFPVIFIVILGPAVINIIEAFS 292
>gi|257069182|ref|YP_003155437.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
gi|256560000|gb|ACU85847.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
Length = 314
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 123/305 (40%), Gaps = 10/305 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVERE--ILRKQQITSLQKDSASSRLRTRD 76
+ ++ L++ + + R + + + + R + ++ ++SRLR
Sbjct: 7 LLSGAVLGLLFGAGVALVAGQLPWLRSRDLDARIDPYLRRSRSMSLFAAPRSTSRLRMVL 66
Query: 77 SKSLRNFVKKLN---LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
L ++ + ++ + +LR AG RS S + V ++V I L+LG++
Sbjct: 67 ENLLGPVAVRVLGVLERLTGGNDQLERRLRLAGRRS--STDSFRVEQVVFGAIGLVLGVV 124
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L L + V G + +++R + + R +P DLL +
Sbjct: 125 LAVMAIALRGSSPLLGLVIVGFGALTGVLLRDYLLGVEIKRRATRMAREFPTVADLLALA 184
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G S A+ RVA L +E T+A++ + A + RT +D +
Sbjct: 185 VAAGESPIAAMERVAR---TSHGALPDEFAATVADIRAGTSVSQALASLGTRTPLDSLGR 241
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + + GT + + LR + R E E + A + VP++ F LP++I+
Sbjct: 242 FGEGVSIAIERGTPLAEVLRAQAQDAREESKRELMETAGQREILMLVPVVFFVLPLVIVF 301
Query: 314 IIGPA 318
I P
Sbjct: 302 AIFPG 306
>gi|113867007|ref|YP_725496.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113525783|emb|CAJ92128.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 293
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 17/303 (5%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
V F+L +V + +R+ + + L S R +
Sbjct: 4 VVAFALAAGLVGVLAATTMAMRRLTVAVPD------EARDYLDPLPPSLRAVWPVVRFFD 57
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ + + K++ + +LR G + L + +V + F +L I + G
Sbjct: 58 HHLVWITPKSL--RAAVDEQLRLTGMSFLMTARQFLSLSIVSALAFCLLAGIAMLGLGVF 115
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
GF P +W+ ++ ++ + R P LD L + VE+G++I+
Sbjct: 116 SPLLLLAASAL-------GFFYPRIWLRDVRKRNLLQVTRHLPVFLDFLTLSVEAGLNIN 168
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
AL + E G PL E + +L +R A +R ++ V N A+IQ+
Sbjct: 169 GALLQAVE--KGPEGPLRREFEHVLRDLKSGLSRADALRRMDDRLRVKEVTNFVGAVIQA 226
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+R G+ + +LR + R+ER AEK+A KL P+++F PV +V+ P ++
Sbjct: 227 ERMGSGLAATLRFQSEQRRTERFQRAEKQAMEAPVKLIFPLVVFIFPVTFIVLGFPIVMK 286
Query: 322 IID 324
+
Sbjct: 287 FMQ 289
>gi|296444391|ref|ZP_06886356.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
gi|296258038|gb|EFH05100.1| Type II secretion system F domain protein [Methylosinus
trichosporium OB3b]
Length = 322
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/309 (18%), Positives = 116/309 (37%), Gaps = 30/309 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDS 67
D L A A+++ ++YAVV P L + +KR ++ + R+ + K
Sbjct: 1 MDRQSLIGATLAALAVGGVMYAVVYPYLSGDFKAQKRTAALMASGDRRREGRSADPAK-- 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R SL++ K + ++ AG S +F
Sbjct: 59 ----RRKMIQDSLKDIETK------AKQITLEQRIAQAGLAVSRS-------------LF 95
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I + Q + A+ + VG P + L ++R + A+P ++
Sbjct: 96 MIGAGVAGLFAALFSFILNQDPLLAIGVGVAVGVGLPHWGLGFLARRRVAKFIEAFPGSV 155
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + R +A P+ E + + + A E F R
Sbjct: 156 DIIIRGIKAGLPVGDCFRMIAS---EADEPVRSEFRQIVESQTIGLSIGEATERFAERMP 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + ++ G ++ ++L L R + M+A+ +A S K + II L
Sbjct: 213 VAEASFFSIVISLQEKSGGNLSEALSNLAGVLRERKKMKAKVRAMSAEAKASAG-IIGSL 271
Query: 308 PVLILVIIG 316
P L+ + +
Sbjct: 272 PFLVGLAVW 280
>gi|145299824|ref|YP_001142665.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
salmonicida A449]
gi|88866591|gb|ABD57359.1| FlpH [Aeromonas salmonicida subsp. salmonicida A449]
gi|142852596|gb|ABO90917.1| flp pilus assembly protein FlpH [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 294
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/296 (20%), Positives = 130/296 (43%), Gaps = 4/296 (1%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKA 91
V+ G +V R ++QQ + R R ++ + +
Sbjct: 3 VMQLFGLALACLASAAVVGWRGYQQQQQWQAQSHRYGPVRQRRDAARDWLAWCGRGYPVG 62
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ L AG S + + L +L+ + + ++W + +
Sbjct: 63 AREQARLQQLLAQAGIFSRHGFDRLRAAKLLGGLGGALAALLWRLLAAPADGFT----LM 118
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
V++ VG P W+ +K +S+ ++ PDA+DLL+I VE+G+++D+AL RV +
Sbjct: 119 WVLVAYVVGAGVPERWLQWRARKVKSAQQKVVPDAIDLLVISVEAGLALDRALLRVGHYL 178
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
G L+ + L T AE+ ++ RT + + L + +YG+ + ++
Sbjct: 179 GALEPGLARQFLRTHAEIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYGSPLAET 238
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+R + E R R + E++A SL K+T+ + + ++++II P + +I++++
Sbjct: 239 MRTISQEARQMRRLALEEQAGSLPGKITLIQMALIMLPMLVLIIAPTLNLLINSLR 294
>gi|17545370|ref|NP_518772.1| tight adherence TadB-related transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|17427662|emb|CAD14181.1| probable pilus assembly tadb transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 325
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/320 (15%), Positives = 111/320 (34%), Gaps = 25/320 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + ++ V+I + R ++ E + ++ S
Sbjct: 1 MNTLMIGFLLSVFVAIALGVLGAYQWWSTHRSQTAR--RLSHRLETALLNSASHNKEASI 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ DS +++L + + L +G ++S+ LL + L I
Sbjct: 59 LKQRVLSDSPEFARLLQRL-----PRIDMVDRFLLQSGL--DWSVGRLLGLSLASAAIVG 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + + L G P +++ KR ++ P+A D
Sbjct: 112 GLVWLLHPLWVAQLSITLM------------GASLPLLYVLRCRAKRLLRLEEQLPEAAD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G S+ AL ++ P+ E+ L +E+++ A +R +
Sbjct: 160 LLSRALRAGHSLPSALDMAGSELP---APIGAELALVFSEINYGVPMNDALAGLTDRVPI 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + A++ G ++ + L + S R + + + S ++ I+ LP
Sbjct: 217 EDLHYLVIAVLIQRESGGNLAEILDNVGSLIRKRLQLLDKVRVLSAEGRM-GGWILTLLP 275
Query: 309 VLILVIIGPAILSIIDTMKD 328
++ VI+ +I T+
Sbjct: 276 PVVGVIVYELNPDLISTLWK 295
>gi|254521552|ref|ZP_05133607.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
gi|219719143|gb|EED37668.1| type II secretion system protein [Stenotrophomonas sp. SKA14]
Length = 311
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 120/309 (38%), Gaps = 11/309 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + + + + + E+R + R + S +
Sbjct: 9 LSLLVLAAGVALLGFAGWVRSHREQRTSATLKTALQPRDEAREVEATGRDS----LGWLE 64
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ L+A L+ L AG+ + I L VRL++ ++ +
Sbjct: 65 RFGRSLSGGRLEAALLANEDRLLLDLAGWNTRRGTAIYLGVRLLL-------ALLVLALA 117
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
E ++ VI G P +S V++R+ +++ P +DLL + G
Sbjct: 118 LAFSEATGLAKIMVVIGALAAGLLLPKFALSAWVKRRRRAVENELPLLIDLLRLLQGVGF 177
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ+L+ + + + L E+ + R + + D + + Q +
Sbjct: 178 SMDQSLQTLGDKLRDALPILGGELQEANVAYTHGRTRAQSLRRLSDVYGDDDLSSLVQLI 237
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+Q +G ++ + LR R +R ++K L K+TV M++ LP L+LV+ GPA
Sbjct: 238 LQVHAHGGAVQEPLRQFSIRLREQRRNSLKEKVGKLSVKMTVVMMLTLLPALMLVLAGPA 297
Query: 319 ILSIIDTMK 327
++++ TM
Sbjct: 298 LVALAATMS 306
>gi|163857687|ref|YP_001631985.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
gi|163261415|emb|CAP43717.1| putative Flp pilus assembly protein [Bordetella petrii]
Length = 332
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/300 (18%), Positives = 116/300 (38%), Gaps = 3/300 (1%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN 88
+V G + ++ R+ R + + + + +L + +
Sbjct: 29 LGMVWRLRGQARSMRVVEQALAGRDPARAALPADESQPAGRLAALAQSTDALGKRLSEGR 88
Query: 89 LKAILVDENIVNKLRAAGFRSEY-SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L L+ + + AG+ + +V+R + + + ++ + L
Sbjct: 89 LAESLLPDEDNKLIELAGYAKPAHARARYVVLRFGLALALPMAAVLARRAW--LGPGSMM 146
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
V + + VG+ P + V+ R+ + P +DLL + G+S+DQ+L +
Sbjct: 147 ALVFTLFIGFAVGYLLPKWMLVRRVKARKKQAGKELPLLVDLLRLLQGVGLSVDQSLSVI 206
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
D L E ++ A + R+ + D + + L+Q DR+G +
Sbjct: 207 VNDFTPVLPVLGHEFGVSTAVYARGRTREQSLARLSQGFDDDDLAAICRLLVQVDRHGGA 266
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + L R +R E ++K L K+T MI+ LP L++V G ILS++ +
Sbjct: 267 VQEPLNRFAQRIRDKRRFELKEKIGRLTVKMTGVMIVTLLPALLIVTGGMGILSVLRGLS 326
>gi|94309585|ref|YP_582795.1| type II secretion system protein [Cupriavidus metallidurans CH34]
gi|93353437|gb|ABF07526.1| flp pilus assembly protein TadB [Cupriavidus metallidurans CH34]
Length = 325
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/319 (16%), Positives = 115/319 (36%), Gaps = 30/319 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDS 67
A I V++ + A+ + G KR+++ LR
Sbjct: 1 MSTIFYAFGILLFVAVVLSVEAIYLWWNNAHGPAAKRIEA------RLRALSAGGHVSAE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R + L ++ + L +G S +S+ +F
Sbjct: 55 RLSILKKRLLSDSPRMQRW--LMSVPRIGALDRWLEQSG--STWSVAQ----------LF 100
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
G++ + + P L + + + P + + L KR ++ PDA+
Sbjct: 101 GYCGLVVLCAVALIPLVPVPLPIILGCMAFV--WLLPFLHVMRLRTKRLKQMEVQLPDAV 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + +G S AL V ++I PL E T E+++ A N R
Sbjct: 159 DMISRALRAGHSFAGALGMVGQEIK---APLGPEFRTTFEEINYGVALDEAMTNLAMRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + + R + + + S +L+ I+ L
Sbjct: 216 VGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEGRLSA-WILGLL 274
Query: 308 PV---LILVIIGPAILSII 323
P +++++ P + ++
Sbjct: 275 PFGTAGLIMVVNPGFMRVL 293
>gi|121534345|ref|ZP_01666169.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121307115|gb|EAX48033.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 324
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/313 (16%), Positives = 120/313 (38%), Gaps = 22/313 (7%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + F ++ VV+ G +R + + R + + + + + A++
Sbjct: 1 MLTLIVAATFITVFVVVVGLYYFGTAARREVKMRISRYVAKPPAPAAPRPEQAAAPAMGA 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+R + + ++L AG S LV+ ++ ++ I
Sbjct: 61 WRSLVRQLSRYFESFQWSR--WLEHRLMQAGLPLRGS--EFLVICTGSALVGMLTLFILA 116
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
G R ++ +G+ P + + V++R + DAL L+ +
Sbjct: 117 RG-----------RPIFAVIGAIIGYLVPLLVLRVKVERRTKAFNDQLGDALILIANSLR 165
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S Q++ V+ ++ P++ E + E++ + A N R D +
Sbjct: 166 TGYSFLQSIEMVSREM---LPPIATEFARVLREMNLGVTTEEALNNLAKRVDSDDLDLVV 222
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LIL 312
A++ + G ++ + L + RS ++ E K + +++ +II LPV L++
Sbjct: 223 TAVLIQRQVGGNLAEVLENIAGTIRSRIKIKGEIKTLTAQGRISG-VIIGLLPVALGLVI 281
Query: 313 VIIGPAILSIIDT 325
+ P + I+ T
Sbjct: 282 YALNPGYMQILFT 294
>gi|85373128|ref|YP_457190.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
gi|84786211|gb|ABC62393.1| hypothetical protein ELI_01505 [Erythrobacter litoralis HTCC2594]
Length = 323
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 103/301 (34%), Gaps = 27/301 (8%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
+ G ++ + + R R + T + +S +
Sbjct: 17 MVVGYSALSGPNAAKESQRRLNAVR--YRHSESTDTKVESQLKKAIAARKPKAHRIA--- 71
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ E + +L G ++++ L V + +L +
Sbjct: 72 --GSASRIEALELRLDRTG--KGWTVSQYFYASLGVGLTVAVLIFLRSGAL--------- 118
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ ++ + +G P + + KR + +PDA++LL+ + SG+ + + L V
Sbjct: 119 --LLSLGVGAVIGAGLPHFVVGFFINKRTADFNSKFPDAIELLVRGLRSGLPVTETLAVV 176
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A+++ G P+ E + + + ++ ++ + L G +
Sbjct: 177 AQEVPG---PVGVEFKSIVERIKIGKTMEEGLQDTADKLNIPEFNFFCITLAIQRETGGN 233
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSIID 324
+ ++L L R M+ + +A S K + I+ LP + ++ I P +
Sbjct: 234 LAETLSNLSEVLRKRGQMKLKIRAMSSESKASA-YIVGALPFIVFAMIWWINPTYIDGFF 292
Query: 325 T 325
T
Sbjct: 293 T 293
>gi|194366101|ref|YP_002028711.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
gi|194348905|gb|ACF52028.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
Length = 311
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 124/314 (39%), Gaps = 11/314 (3%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + + + + I + I E R + R++ + S
Sbjct: 5 AWFALSLLVLAAGIALLGIGGWVRSHREHRTSATLKTALQPREEARDNETTQRDS----L 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + L+A L+ L AG+ + I L +RL++ ++
Sbjct: 61 GWLERFGRALSGGRLEAALLANEDRLLLDLAGWNTRRGTAIYLGLRLLLA-------LLV 113
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + ++ VI G P +S+ V++R+ ++ + P +DLL +
Sbjct: 114 LALALAVSDATGLAKIMVVIGALAAGLLLPKFVLSSWVKRRRRAVDKELPLLIDLLRLLQ 173
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+DQ+L+ + + + L E+ + R + D + +
Sbjct: 174 GVGFSMDQSLQTLGDKLRDALPVLGGELQEANVAYTHGRTRAQSLRRLSEVYADDDLSSL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
Q ++Q +G ++ + LR R +R ++K L K+TV M++ LP L+LV+
Sbjct: 234 MQLILQVHAHGGAVQEPLRQFSIRLREQRRNTLKEKVGKLSVKMTVVMMLTLLPALMLVL 293
Query: 315 IGPAILSIIDTMKD 328
GPA++++ TM
Sbjct: 294 AGPALVALATTMSK 307
>gi|110636325|ref|YP_676533.1| type II secretion system protein [Mesorhizobium sp. BNC1]
gi|110287309|gb|ABG65368.1| type II secretion system protein [Chelativorans sp. BNC1]
Length = 337
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/317 (17%), Positives = 123/317 (38%), Gaps = 19/317 (5%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ LA + A S L Y ++ ++ S + +R +I + + + ++
Sbjct: 7 SLLAFVVLAACSAGGLAYVLMFNTIASEKKVERRLETVKRAQIEGNVVRAARDRAAEIAK 66
Query: 72 LRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
R +SL++ + + L + ++R AG E S+ ++ VV ++F+I+
Sbjct: 67 RRRSIQESLKDIETRQKDQDRFLKRPPLKIQIRQAGL--EMSMERFYILSAVVGLLFVIV 124
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
I + + F AP I+ L ++R + +P+ALD++
Sbjct: 125 TFIAGAPL-----------LAVAGAMVAGFFGAPRWIIAYLRRRRVQAFLNEFPNALDII 173
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V+SG+ ++ A+R +A P+ E + A
Sbjct: 174 VRAVKSGLPLNDAVRMIA---VEAQEPVRTEFRRLVEAQQLGLPMAEAAMRMSETMPCPE 230
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLP 308
V L + G ++ ++L L R + ++A +A S+ K + +I + +
Sbjct: 231 VNFFGIVLQIQSQAGGNLSEALGNLSRVLRERKKIKARVQALSMEAKASAVIIGALPIVV 290
Query: 309 VLILVIIGPAILSIIDT 325
++ I PA + + +
Sbjct: 291 AALVYITSPAYIMPLFS 307
>gi|84385699|ref|ZP_00988730.1| putative TadC [Vibrio splendidus 12B01]
gi|84379679|gb|EAP96531.1| putative TadC [Vibrio splendidus 12B01]
Length = 290
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/250 (24%), Positives = 122/250 (48%), Gaps = 5/250 (2%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T++ SL++ K + + L AG +E+ + ++++V P+IF I+ I
Sbjct: 45 TQEKVSLKDKFLVFTSKLAFNRDEVKANLIKAGIHNEFFSQVYYLIKIV-PMIFCIVTIG 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+++ +L + VG +LI + P ++I++ + S I P LDL+ +C
Sbjct: 104 YMYLNSRLDMLNSFMSVGISLLIFLIA---PDMYIASRGKSNISHISSRLPFLLDLMNVC 160
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G++++ +L ++ ++ L+ + T A FY+ ++
Sbjct: 161 VHTGMTLEASLEYLSNELKMVDENLAFVVQTTSERAKV-VGLDKALSEFYDLVPTTEAQS 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L QS +YG+S+G L L S+ R ++E E+K +G K++VPMI F + ++++
Sbjct: 220 FVMTLTQSLKYGSSVGAVLASLASDIREINMLELEEKIGKMGAKMSVPMIAFIMIPIVIL 279
Query: 314 IIGPAILSII 323
I P I+ ++
Sbjct: 280 IAAPGIMRML 289
>gi|163801322|ref|ZP_02195221.1| hypothetical protein 1103602000598_AND4_10654 [Vibrio sp. AND4]
gi|159174811|gb|EDP59611.1| hypothetical protein AND4_10654 [Vibrio sp. AND4]
Length = 298
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 133/309 (43%), Gaps = 15/309 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD--SASSRLRTR 75
+ A+SI + ++ L S +++ + V + ++ + + S L+
Sbjct: 1 MIIAISILLFLLGTIVFILNSKSMKEEQEYVDNFKFMISDHDSKQEYYNLFNQISELKDI 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
S+ +KK L + L + G ++ S ++ L+ +I LG+ +
Sbjct: 61 IDDSIYLVIKKF-----LSGNELYTMLSSGGLVNKKSKINFFLIYLIETVI--ALGLFYY 113
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
DK + F L + I F ++ + + + LDLL +
Sbjct: 114 LTEDKTKFFMFILGFLVINNIAVKMFFKKFFVNVERLRTKTN-----FTYFLDLLATATK 168
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG++++ AL V+E IG S LS + + ++S +A EN + VR+ T
Sbjct: 169 SGMTVELALVAVSEYIGNMSSSLSNYIKIYSNDIS-NNGFSIAGENLRKSLDLPEVRDFT 227
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L + G + D+LRVL E R+ +E E+K + K+ +P+I+F + +I+ II
Sbjct: 228 AVLENALESGAPVTDALRVLSKEIRNFHFIETEEKIGKVNAKMGIPLILFIMFPIIVEII 287
Query: 316 GPAILSIID 324
P +L+++
Sbjct: 288 APGVLNLLS 296
>gi|150377236|ref|YP_001313831.1| type II secretion system protein [Sinorhizobium medicae WSM419]
gi|150031783|gb|ABR63898.1| type II secretion system protein [Sinorhizobium medicae WSM419]
Length = 332
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 111/319 (34%), Gaps = 20/319 (6%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
AT L + + + I V++ + + + R + S +
Sbjct: 1 MATSLLFPVFVFLLASTSIGGVMVAAFYPRVSKASAYRQRLARMSAPAENKRSEPTEPDG 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R K+LR +K A + +LR +G +S VV +
Sbjct: 61 RDRRRSVEKTLREIEEKRQANARKGKTTLTARLRQSGLH--WSPKTYFVVCACAALASWC 118
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
++ + + G P V+++ R + +P+A+D+
Sbjct: 119 AMLLL-----------DTGALVSAGFAISGGLLLPHVYVNIKRNARFAKFTAEFPNAVDV 167
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ +++G+ + LR +A + P+ E L + + + A + R +
Sbjct: 168 IVRGLKAGLPMPDCLRVIATEAQE---PVKGEFLAIVQDQTLGIPVDEAVKRMSERMPLA 224
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ R G S+ ++L L R + M+A+ KA S K + II LP
Sbjct: 225 EAHFFAIVIAIQSRTGGSLSEALGNLSKVLRERKKMKAKIKAMSSEAKSSAG-IIGALPF 283
Query: 310 LI---LVIIGPAILSIIDT 325
L+ + P ++++
Sbjct: 284 LVAGAVYFASPDYMALLFA 302
>gi|187921509|ref|YP_001890541.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719947|gb|ACD21170.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 293
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 63/307 (20%), Positives = 124/307 (40%), Gaps = 21/307 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + V F LI + I KSV + + T L S R+
Sbjct: 1 MLLLIAFVVSFGLIAVIAIGY----------KSVNGLAGSVPDENRTFLDPLPKSLRVLW 50
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + ++ ++ +L + L+ + +I ++
Sbjct: 51 PLVNFVVHHFGGKFSRKLVEKTDLQLRL---------TSLTFLMNAHQFIALSIIASVLA 101
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L+ ++ + +G+ P +W ++ ++R + I + P LD L + V
Sbjct: 102 TLVALLLMLALGMFSALVLLGVAVLGYFYPRIWTRDVRRRRVARILKHLPIYLDFLTLAV 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G++I+ A+++ E G PL E + +L NR A +R ++ V N
Sbjct: 162 EAGLNINGAIQKAVE--KGPEGPLRWEFEHVLRDLKSGLNRMEALYRMDDRLRIKEVTNL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
++Q++R G+ + SLR + RSER AEK+A KL P+++F P+ +V+
Sbjct: 220 VGTVVQAERMGSGLSKSLRFQSEQRRSERFQRAEKQAMEAPVKLVFPLLVFIFPITFIVL 279
Query: 315 IGPAILS 321
P +
Sbjct: 280 GFPIAMK 286
>gi|117928944|ref|YP_873495.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649407|gb|ABK53509.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 311
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 110/308 (35%), Gaps = 8/308 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
A+ + + + +P L R+ R+ R Q + + +
Sbjct: 7 AAVGLCAGVGTALAVSGVPHFRHPRLADRLAPYL--RDRSRPSQPPVHTAARGTWPVVGQ 64
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + + + ++ +L AAG ++ V +++ I ++G+
Sbjct: 65 LLAPVLADIARRVDRVMGGPGSVRRRLDAAG--RNMAVEEFRVEQVLWGSIGFLVGLGVS 122
Query: 136 FGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
P ++ G A V +S Q+R + +P +LL + V
Sbjct: 123 LLLLAQNPHRPPLALGMLCVIAACCGAIARDVTLSREAQRRSRRMLAEFPTVAELLALAV 182
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S AL RV G LS E ++E + A EN R +D +
Sbjct: 183 GAGESPAAALERVVRVCRG---ELSVEFARALSEARTGGSLVTALENLAARNPLDIMSRF 239
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+I + + GT + D LR S+ R + VP++ LP+ +L
Sbjct: 240 VDGMIVAMQRGTPLADVLRAQASDVREAAKRSLLDIGGRKEIGMMVPVVFLILPITLLFA 299
Query: 315 IGPAILSI 322
+ P+ +S+
Sbjct: 300 LFPSFVSL 307
>gi|206559898|ref|YP_002230662.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035939|emb|CAR51831.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 332
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 58/320 (18%), Positives = 127/320 (39%), Gaps = 11/320 (3%)
Query: 13 ELAVAITTAVSIFSLIYA-----VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ V + A++I ++ ++ +L + + +
Sbjct: 15 SVGVLLLAALAIVRIVLVQRAERALVNALDRRTAAVEAAAARAGAAEPARDAVAPAAPRV 74
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ LR R +++ L+ + L GF + + + R+V I+
Sbjct: 75 RFAGLRARFEDVGMRWLE-TGFSRYLIADEDRQLLEQCGFVDVRARALFVGARIVCAILL 133
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ + G + +P + V G+ P +++ R+ SI P +
Sbjct: 134 PALAVLVLIGRGQQTRWPLWISV-----ALVTGYMLPKIYVRRRATARRQSIAAELPLLV 188
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L + G+S+DQ+++ V D LS E+ + + + R+ + + N
Sbjct: 189 DMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQSLQRLTNSFD 248
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+ L
Sbjct: 249 NEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLL 308
Query: 308 PVLILVIIGPAILSIIDTMK 327
P L++V GP I++++ +
Sbjct: 309 PALLIVTAGPGIMTVLAALA 328
>gi|319779646|ref|YP_004130559.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
MCE9]
gi|317109670|gb|ADU92416.1| Type II/IV secretion system protein TadC [Taylorella equigenitalis
MCE9]
Length = 267
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 103/238 (43%), Gaps = 8/238 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ + L +G ++++ + L+ ++ ++ + +L
Sbjct: 37 KILGWQFGAGLNVSLAKSGLSTKWTPHKLV------GLVAFVILFELVLVLWVILADLQI 90
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
L + + + ++ P +I + KR++ + +P LD+L + + SG + +L+
Sbjct: 91 LYLYILFIFIFITLLWPKAYIKRYISKRRTELSEIFPFFLDVLSVSLSSGQNFTMSLQYA 150
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ + L +E+ TI E+ + A ++ R+ ++ V+ + Q+D+ G
Sbjct: 151 FNSLP--NGVLKDELGFTIREMQAGKPKLEAIDDMAQRSDLNVVKQWVNNIKQADQLGLQ 208
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + R S R +R + AEK A K+ P++ F P +V++ P + I+++
Sbjct: 209 LASAFRAQASYIRKQRYLMAEKLAFEAPVKMLFPLVFFIFPCTFIVLLFPVFMQILES 266
>gi|114321307|ref|YP_742990.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114227701|gb|ABI57500.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 312
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 60/317 (18%), Positives = 118/317 (37%), Gaps = 13/317 (4%)
Query: 14 LAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ ++ +F+ A+V P + R+ E ++ + D
Sbjct: 2 MVWLFVASLVLFAAGLALVVWPLWRRSQEYGRV-----EGRLMGTARGGGRDWDEPVDGR 56
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR--SEYSLNILLVVRLVVPIIFLIL 130
+ R + A+ D + +LR G R + + LLV L ++ L
Sbjct: 57 SGAHTLWRRLAAGRGAAPALAQDPVLARRLRQWGLRRAGDRAAVALLVQALPWVVVAGGL 116
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G +WI E VG + L+G P ++ L RQ I A+ +L
Sbjct: 117 GFVWISRGALTGED-----VGLLALLGLAALFLPKRVVAGLASARQMRIGEQVTTAVQIL 171
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG S+ AL VA + LS E+ L + + ++
Sbjct: 172 RMLLDSGQSVQHALGMVAVEGRELMPDLSRELDLALNRARSGEGLVEVLDGLARDLEVPE 231
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + L Q G ++ + L L + ++K + K++V M++F P L
Sbjct: 232 LDDTVLILKQVVEQGGNVDEPLTRLAELINDRQRTRTQEKVTKMSAKMSVVMMLFLFPAL 291
Query: 311 ILVIIGPAILSIIDTMK 327
++V+ P ++S++ +
Sbjct: 292 LVVLAAPGLISLVGALG 308
>gi|312883313|ref|ZP_07743039.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368929|gb|EFP96455.1| putative Flp pilus assembly protein TadC [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 288
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 112/230 (48%), Gaps = 5/230 (2%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+++ +L +AGF L + ++ ++ +F + +I L F V +V
Sbjct: 63 DKDDLEKRLFSAGFYHPMILKLYYPLKYIIMFLFSVCILISFIVGIISLYDLFLYNVISV 122
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+I F P I ++ +I P LDL+ +CV +G++I+ +L +A+++
Sbjct: 123 FMI----FFIPDKIIGLRIKSNIKNISSRLPFLLDLMNVCVHTGMTIESSLEYLAKELQM 178
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L+ + LT+ A + FY+ ++ L+QS ++G+S+G L
Sbjct: 179 VDRQLARVVTLTVERAKI-VGLDKALQEFYDLVPTSESQSMVMTLVQSLQFGSSVGAVLS 237
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + R +M+ E+K +G K+T+P+++F + ++++I+ P ++ ++
Sbjct: 238 TLSKDIRELNMMDIEEKIGKMGAKMTMPLVVFIMIPMLVLIVAPKVMRVM 287
>gi|260892929|ref|YP_003239026.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865070|gb|ACX52176.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 305
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 117/269 (43%), Gaps = 10/269 (3%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
++ S R+ L + L E N L AG +N L +
Sbjct: 45 REQELREPLSRRIFKPWLTKLGRLGGRF-LPGGSRKEMWANLLAMAGHPWGLGVNEFLAL 103
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+++ + + +++ + ++ +GF P + + +++RQ +
Sbjct: 104 KVLAALTGGMAFVLFFW------HLTPFAAPLWGVVGWLLGFLFPDFLLRSRIRRRQREV 157
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+R P+ +DLL + VE+G+ + AL RV E + G PL +E+ + E+ R+ A
Sbjct: 158 RRQLPEVIDLLTVSVEAGLGFEGALTRVVEKMDG---PLPQEICRALQEIRVGRPRREAL 214
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R ++ + + A+I +++ G S+ LR+ E R R +A++ A K+
Sbjct: 215 REMAQRIGVEELLSFVGAVIMAEQMGVSLARVLRLQSQEIRRRRRQQAQEAAFKAPVKML 274
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+P+++ P +V++GPA+L I+
Sbjct: 275 LPLVLCIFPATFVVLLGPAVLRIMRFFGK 303
>gi|295690794|ref|YP_003594487.1| type II secretion system F domain-containing protein [Caulobacter
segnis ATCC 21756]
gi|295432697|gb|ADG11869.1| Type II secretion system F domain protein [Caulobacter segnis ATCC
21756]
Length = 325
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 122/314 (38%), Gaps = 22/314 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V F I + +G K+ + I K+ ++
Sbjct: 1 MLFILAGVLGFITIAGLGFAFVGDDSQAS--KAAKRAQVIGAGGVDRQAAKNKPAANPNE 58
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+++ +K+ K +I +++AAG L ++ + L V +I ++L +
Sbjct: 59 VRRQTILKALKEQERKQKKATLSIAARMQAAGLGPNVRLFWMVSLGLAVGVILIVLAL-- 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
Q A+ G P +S L Q R A+ DA+D+++ +
Sbjct: 117 -----------GQTVWIALGAGFAAGLGLPRWLLSILAQGRIRKFTEAFSDAIDIIVRGI 165
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+SG+ + LR + + PL+ E + ++ A + + R + +R
Sbjct: 166 KSGLPLHDCLRIIGQ---ESPEPLAGEFRMLTENVAMGVPLDAALDKMHERMPTNELRFF 222
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L + G ++ ++L L + RS ++M+ + KA S + +II LP ++V+
Sbjct: 223 AIVLAIQQKTGGNLAEALGNLSTVLRSRKMMKEKIKALSAEAVASA-LIIGALPPGVIVL 281
Query: 315 I---GPAILSIIDT 325
I PA + + T
Sbjct: 282 ISVTSPAYMQPLFT 295
>gi|134291850|ref|YP_001115619.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134135039|gb|ABO59364.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 325
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 109/308 (35%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ I T V++ I V R LR +
Sbjct: 1 MDSIFYGFVILTFVAVVLAIEGVYQWWNARHGNAARRIE-----SRLRAMSAGGSVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + +++ L+ +G + ++L L +
Sbjct: 56 MSILKKRMLDESKPF--DRLLLRVPRVQSLDLVLQQSGLDWTVAKLVVLSGALCAATALV 113
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ L + AV+ + C P+++++ ++R ++R PD D
Sbjct: 114 L--------------SVTPLPLVAVLPVALFAGCIPTLYVTRHRRRRMLKLERQLPDVCD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S AL V E+ P+S E +T E+++ + A N R
Sbjct: 160 MIARALRSGHSFTSALGMVGEEF---PEPMSGEFRITFDEINYGVSLHDALVNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +R A++ G ++ + L + + R + + + S +L+ I+ LP
Sbjct: 217 NDLRYFVIAVLIQRETGGNLAELLDSIAALVRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAGMMA 283
>gi|190574783|ref|YP_001972628.1| putative transmembrane type II secretion protein [Stenotrophomonas
maltophilia K279a]
gi|190012705|emb|CAQ46333.1| putative transmembrane type II secretion protein [Stenotrophomonas
maltophilia K279a]
Length = 311
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 122/310 (39%), Gaps = 11/310 (3%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + + + + + I E+R + R++ + S +
Sbjct: 9 LSLLVLAAGVALLGIAGWVRSHREQRTSATLKTALQPREEARDTEAARRDS----LGWLE 64
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ L++ L+ L AG+ + I L +RL++ G++ +
Sbjct: 65 RFGRALSGGRLESALLANEDRLLLDLAGWNTRRGTAIYLGLRLLL-------GVLVLVLA 117
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
R+ VI G P +S+ V++R+ ++ P +DLL + G
Sbjct: 118 LAFSSTQGLARMMVVIGALAAGLLLPKFILSSWVKRRRRAVDNELPLLIDLLRLLQGVGF 177
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+DQ+L+ + + + L E+ + R + D + + Q +
Sbjct: 178 SMDQSLQTLGDKLRDALPVLGGELQEANVAYTHGRTRAQSLRRLSEVYADDDLTSLMQLI 237
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+Q +G ++ + LR R +R ++K L K+TV M++ LP L+LV+ GPA
Sbjct: 238 LQVHAHGGAVQEPLRQFSIRLREQRRNTLKEKVGKLSVKMTVVMMLTLLPALMLVLAGPA 297
Query: 319 ILSIIDTMKD 328
++++ TM
Sbjct: 298 LVALATTMSK 307
>gi|226325183|ref|ZP_03800701.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
gi|225206531|gb|EEG88885.1| hypothetical protein COPCOM_02975 [Coprococcus comes ATCC 27758]
Length = 303
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 64/321 (19%), Positives = 117/321 (36%), Gaps = 22/321 (6%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ + + A + + Y + RM +
Sbjct: 1 MNIQYLLVLLFACAAGGMTYVLAGEPFRKPLARARM----------SIAARKGMHAKPTQ 50
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+K+ + + +KL AG + S + + I
Sbjct: 51 RMKIAEAIDRAGEAFEKVIPLKLSESRELQDKLDLAGLKITPSTWR------AISLGITI 104
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
I + G + Y + + I+ G+ VW+S+ + R I R P AL+L
Sbjct: 105 FTAIMLAGAALVGGYGIAMALLVGIIGAVGGWAVCGVWLSHAGKTRGEEIDRYLPPALEL 164
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQM 248
L I V +G+ +++ R++AE+ PL++E T E+S +R A ++ R
Sbjct: 165 LTISVSAGVLVERGFRQLAEN--KALGPLADEFARTDMEISHLGVSRVDALDHMRRRCDS 222
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ ALI++ R GTSI L R R + L K+ VP++ F +
Sbjct: 223 PLMGYFCAALIEATRKGTSISGVLESQAKLARKARYDALTAQINKLSTKMAVPLVFFLIA 282
Query: 309 VLILV---IIGPAILSIIDTM 326
VL+L+ +I P +++ M
Sbjct: 283 VLVLILPPLIIPTASMLMEIM 303
>gi|51597675|ref|YP_071866.1| hypothetical protein YPTB3377 [Yersinia pseudotuberculosis IP
32953]
gi|51590957|emb|CAH22615.1| Putative exported protein [Yersinia pseudotuberculosis IP 32953]
Length = 277
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 1/204 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ IL I+ I ++ + + +L P + I N + KR +++ ++ P
Sbjct: 74 IVIFILSILTILAIFNVVNINQKTLLTIGLLSIISTLYLPKMIIKNALTKRTNNLLKSLP 133
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+ CV+SG++I+ +L + + L M + A +
Sbjct: 134 FFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEIN-GLENAIKELQY 192
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ ++ L S +G+++ + L L + R +L+ E+ + L KLT+P+ +
Sbjct: 193 YSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFL 252
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
F L +L++I P+IL +++ +K+
Sbjct: 253 FILIPFVLLVISPSILELLNYVKN 276
>gi|326388861|ref|ZP_08210443.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326206461|gb|EGD57296.1| type II secretion system protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 323
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 56/310 (18%), Positives = 118/310 (38%), Gaps = 29/310 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +AI V+ ++ I + + + E +R+++V + ++ + + + ++R
Sbjct: 7 ILMAIGLTVAAWAGI-TLFMGPNPARESSRRLQAVKLRHSESTTDKVEAQYRKALAARKP 65
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ E + +L G ++++ L L + I+F I
Sbjct: 66 KAYK----------LAGSSSRLEALSLRLDRTG--RGWTISQYLYASLGLVILFGGFVWI 113
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
V + L +G P +S + KR ++ +PDAL+LL+
Sbjct: 114 -----------KSGSLVLGLALGIAIGAGLPHFAVSWAINKRINNFITRFPDALELLVRG 162
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG+ I + L VA ++ G P+SEE + + + A + +R +
Sbjct: 163 LRSGLPISETLVVVANELPG---PVSEEFKIVTDRIRLGRTMEDALQETADRLDLAEFSF 219
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L G ++ ++L L R M+ + KA S K + ++ ++ +
Sbjct: 220 FCITLAIQRETGGNLAETLANLADVLRKRAQMKLKIKAMSSESKASAYIVGSLPFIVFAL 279
Query: 314 I--IGPAILS 321
I I P L
Sbjct: 280 IYSINPRYLG 289
>gi|167587310|ref|ZP_02379698.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 264
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 52/266 (19%), Positives = 114/266 (42%), Gaps = 6/266 (2%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + + ++L R S + ++ +V + L G+ + + L R+
Sbjct: 1 AAGRRARVAQLLERMSTAGARWLD-TGFGRHIVADEDRRLLEQCGYVDARTRGLFLSARI 59
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ +L + ++ + V ++L GF P + I R+ ++
Sbjct: 60 AGALVAPVLFLAFVGPRLHGGRW-----VLGLVLAFVTGFMLPKILIRRRAAARRQAVVD 114
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+S+DQ+L+ V D G LS EM + + + R+ + +
Sbjct: 115 ELPLLVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEMGIAQRQFAAGRTREQSLQR 174
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + +R + +IQ D++G ++ + L+ R R ++ L K+T
Sbjct: 175 LASGFDNEDLRAIVRLMIQVDKHGGAVQEPLKQFGDRLREARRAMLRERIGRLTVKMTGV 234
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
MI+ LP L++V GP ++S++ +
Sbjct: 235 MIVTLLPALLIVTAGPGMISVMHALS 260
>gi|269926133|ref|YP_003322756.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789793|gb|ACZ41934.1| type II secretion system protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 336
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 54/320 (16%), Positives = 129/320 (40%), Gaps = 22/320 (6%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+F E +T A+ IF + + + + ++R+ + + +
Sbjct: 7 IFTQPENLAGVTVALGIFLIFLGLTL-YIKHRRWQERLHQLIGRHLEATSSSQDTSPEIL 65
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L + + LK +++ +L AG + + ++VRL ++
Sbjct: 66 PQKALLSWRI--------REKLKDLIITPKFRRELLTAGL--GIAADKFILVRLAGALLC 115
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ I R A I G+ P +++ ++R S+++R P A+
Sbjct: 116 SFLVMLLI------PGNYPLFRTIAAIFGLIAGYQLPRAYLALRRKRRLSALERQLPGAI 169
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L +E+G S+ QA+ A ++ S P+S+E++ + + +++ A R
Sbjct: 170 DVLAGALEAGSSLAQAMMLAAREM---SNPISDELIKVVRDQELGLSQEEALRRMLERCP 226
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IF 305
+ + A+ R G S+ L+ + + R ++ E K + +++ ++ I
Sbjct: 227 SEDLDMMITAINIQYRVGGSLAHVLKSISTTIRERLRIKGEIKVLTAQGRISAYIVTAIP 286
Query: 306 FLPVLILVIIGPAILSIIDT 325
FL ++ ++ + + + T
Sbjct: 287 FLLTAVIFLLNRSYIMPLFT 306
>gi|309780756|ref|ZP_07675497.1| TadB protein [Ralstonia sp. 5_7_47FAA]
gi|308920438|gb|EFP66094.1| TadB protein [Ralstonia sp. 5_7_47FAA]
Length = 325
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 122/319 (38%), Gaps = 25/319 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + A++ +++ + AV + R S L+ +S+
Sbjct: 1 MDPLVIGFALSVFIAMMLAVLAVYLWWDSRHSSAARRFS-----HRLKMALASSVSHGGT 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R L + + + +L +G ++S++ + L+VP +
Sbjct: 56 DSILKQRMLSESPEVAA--MLGRLPRIQTLDRRLLQSGL--DWSVSRFSALTLMVPAMIA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ ++ +++ G P++++ + +R ++ P+A D
Sbjct: 112 IVFSLF------------DPPPMTLLVFVLAGASLPALYVMHRRTRRLLKLEAQLPEATD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S+ AL ++ P+ E+ + ++++F + AF +R +
Sbjct: 160 LISRALRAGHSLPAALEMAGTEL---PAPIGAELAIVFSQINFGVSMSDAFAGLTDRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +R A++ G ++ + L + R + + + S +L I+ LP
Sbjct: 217 DDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVLSAEGRL-GGWILTLLP 275
Query: 309 VLILVIIGPAILSIIDTMK 327
++ + I ++ T+
Sbjct: 276 PVMGLAIYLLNPELMSTLW 294
>gi|241662161|ref|YP_002980521.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|240864188|gb|ACS61849.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 325
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 122/319 (38%), Gaps = 25/319 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + A++ +++ + AV + R S L+ +S+
Sbjct: 1 MDPLVIGFALSVFIAMMLAVLAVYLWWDTRHSSAARRFS-----HRLKMALASSVSHGGT 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R L + + + +L +G ++S++ + L+VP +
Sbjct: 56 DSILKQRMLSESPEVAA--MLGRLPRIQTLDRRLLQSGL--DWSVSRFFALTLMVPAMIA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ ++ +++ G P++++ + +R ++ P+A D
Sbjct: 112 IVFSLF------------DPPPMTLLVFVLAGASLPALYVMHRRTRRLLKLEAQLPEATD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S+ AL ++ P+ E+ + ++++F + AF +R +
Sbjct: 160 LISRALRAGHSLPAALEMAGTEL---PAPIGAELAIVFSQINFGVSMSDAFAGLTDRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +R A++ G ++ + L + R + + + S +L I+ LP
Sbjct: 217 DDLRYLVIAILIQRESGGNLAEILDNVGKLIRKRLQLLDKVRVLSAEGRL-GGWILTLLP 275
Query: 309 VLILVIIGPAILSIIDTMK 327
++ + I ++ T+
Sbjct: 276 PVMGLAIYLLNPELMSTLW 294
>gi|238750902|ref|ZP_04612399.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
gi|238710816|gb|EEQ03037.1| Type II secretion system protein [Yersinia rohdei ATCC 43380]
Length = 265
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 1/204 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
II + L I+ I L+ + + ++ F P + I N++ KR S+ ++ P
Sbjct: 62 IIVVNLVILVILLSTGLININITVFIVFGLITIVGTFFLPKIIIKNILYKRTESVLKSLP 121
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+ CV+SG++ID AL A+ + LS M+ ++A + +
Sbjct: 122 FFIDITAACVQSGMTIDGALNYTAKKFKLINPDLSLIMIKMSKRAEIN-GLELAIKELHQ 180
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R AL S +G+SI D L L E R +L+ +E+K + L KLT P+ I
Sbjct: 181 CSTAMEIRMFCSALQYSISFGSSIYDQLAKLSQEMREMQLLVSEEKVSKLSTKLTFPLFI 240
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
F L I+++I P++L ++ ++
Sbjct: 241 FILIPFIVLVISPSVLELLTHVQK 264
>gi|22127363|ref|NP_670786.1| hypothetical protein y3489 [Yersinia pestis KIM 10]
gi|45442765|ref|NP_994304.1| hypothetical protein YP_3003 [Yersinia pestis biovar Microtus str.
91001]
gi|108809095|ref|YP_653011.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
gi|108810710|ref|YP_646477.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
gi|145597782|ref|YP_001161858.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
gi|150260282|ref|ZP_01917010.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162421097|ref|YP_001604880.1| hypothetical protein YpAngola_A0262 [Yersinia pestis Angola]
gi|165925128|ref|ZP_02220960.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939890|ref|ZP_02228429.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009023|ref|ZP_02229921.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212095|ref|ZP_02238130.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167419193|ref|ZP_02310946.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167425195|ref|ZP_02316948.1| type II secretion system protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466380|ref|ZP_02331084.1| type II secretion system protein [Yersinia pestis FV-1]
gi|186896813|ref|YP_001873925.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|218927879|ref|YP_002345754.1| hypothetical protein YPO0688 [Yersinia pestis CO92]
gi|229837370|ref|ZP_04457533.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Pestoides A]
gi|229840582|ref|ZP_04460741.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842868|ref|ZP_04463020.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. India
195]
gi|229900907|ref|ZP_04516031.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Nepal516]
gi|270487717|ref|ZP_06204791.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|294502754|ref|YP_003566816.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
gi|21960448|gb|AAM87037.1|AE013952_4 hypothetical [Yersinia pestis KIM 10]
gi|45437631|gb|AAS63181.1| putative exported protein [Yersinia pestis biovar Microtus str.
91001]
gi|108774358|gb|ABG16877.1| hypothetical protein YPN_0545 [Yersinia pestis Nepal516]
gi|108781008|gb|ABG15066.1| hypothetical protein YPA_3104 [Yersinia pestis Antiqua]
gi|115346490|emb|CAL19364.1| putative exported protein [Yersinia pestis CO92]
gi|145209478|gb|ABP38885.1| hypothetical protein YPDSF_0472 [Yersinia pestis Pestoides F]
gi|149289690|gb|EDM39767.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162353912|gb|ABX87860.1| type II secretion system protein [Yersinia pestis Angola]
gi|165912201|gb|EDR30839.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|165923328|gb|EDR40479.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992362|gb|EDR44663.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206841|gb|EDR51321.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166963187|gb|EDR59208.1| type II secretion system protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167055958|gb|EDR65739.1| type II secretion system protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186699839|gb|ACC90468.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682246|gb|EEO78338.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Nepal516]
gi|229690135|gb|EEO82192.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. India
195]
gi|229696948|gb|EEO86995.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229705493|gb|EEO91503.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis Pestoides A]
gi|262364731|gb|ACY61288.1| hypothetical protein YPD8_0598 [Yersinia pestis D182038]
gi|270336221|gb|EFA46998.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|294353213|gb|ADE63554.1| hypothetical protein YPZ3_0644 [Yersinia pestis Z176003]
gi|320016749|gb|ADW00321.1| Type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 277
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 1/204 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ IL I+ I ++ + + +L P + I N + KR +++ ++ P
Sbjct: 74 IVIFILSILTILAIFNVVNINQKTLLTIGLLSIISTLYLPRMIIKNALTKRTNNLLKSLP 133
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+ CV+SG++I+ +L + + L M + A +
Sbjct: 134 FFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEIN-GLENAIKELQY 192
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ ++ L S +G+++ + L L + R +L+ E+ + L KLT+P+ +
Sbjct: 193 YSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFL 252
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
F L +L++I P+IL +++ +K+
Sbjct: 253 FILIPFVLLVISPSILELLNYVKN 276
>gi|304311188|ref|YP_003810786.1| type II secretion system protein [gamma proteobacterium HdN1]
gi|301796921|emb|CBL45134.1| type II secretion system protein [gamma proteobacterium HdN1]
Length = 319
Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats.
Identities = 55/318 (17%), Positives = 116/318 (36%), Gaps = 16/318 (5%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
FD + A+ + + +
Sbjct: 3 MFDSITLQSGLFSYLPALLGALTAAFLTYSLT--------VIIRNRRAATGLLGDESWRD 54
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
RL K L V+ L E I N+L + G R + ++ +
Sbjct: 55 PTPLIYRLFKPFIKLLA--VEFSKLIKPAKRERISNRLSSGGLRYAILPEEFMAMKYICA 112
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ + + + + L + VGF P +W+S+ + +R+ + +P
Sbjct: 113 VVAGGITVWSLLTMPDMKAEFKLLLYPLAL----VGFFYPDIWLSDQINRRRRITLKEFP 168
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDLL++ + +G++ AL E + + + +E + E+ +R+ A +
Sbjct: 169 FMLDLLVLGMRAGLNYAAALGHAIEAMP--NGVIRDEFSKVLREIRAGKSRREALLTLAD 226
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ + N A+ Q + G I L V + R+ER AE A ++ +PM++
Sbjct: 227 RMNLEAISNFVAAVNQVEETGGEIVSVLMVQAEQRRNERFTAAEIAANKAPIRMLIPMML 286
Query: 305 FFLPVLILVIIGPAILSI 322
F P++ +++ I+ +
Sbjct: 287 FLFPIIFMLLTFIIIVKL 304
>gi|330830427|ref|YP_004393379.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
gi|328805563|gb|AEB50762.1| Flp pilus assembly protein TadC [Aeromonas veronii B565]
Length = 294
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 112/242 (46%), Gaps = 4/242 (1%)
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+ + L AG + + L +L+ + I+ + W +
Sbjct: 57 RGYPVGGREQARLQQLLAQAGIFASQGFDRLRGAKLLGGLGLAIMVLTWRLLGAPADGFT 116
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ V++ VG P W+ +K +++ ++ PDA+DLL+I VE+G+++D+AL
Sbjct: 117 ----LMWVLMAYVVGAGLPERWLQWRARKVKAAQQKVVPDAIDLLVISVEAGLALDRALL 172
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RV + L+ + L T AE+ ++ RT + + L + +YG
Sbjct: 173 RVGHYLEALEPGLARQFLRTHAEIQMRGDQASCLARLAWRTGLPELDRLANTLQMAQQYG 232
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + +++R + E R R + E++A SL K+T+ + + ++++II P + +I++
Sbjct: 233 SPLAETMRTISQEARQMRRLALEEQAGSLPGKITLIQMALIMLPMLVLIIAPTLNLLINS 292
Query: 326 MK 327
++
Sbjct: 293 LR 294
>gi|269955831|ref|YP_003325620.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304512|gb|ACZ30062.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 312
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 50/292 (17%), Positives = 107/292 (36%), Gaps = 11/292 (3%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS--SRLRTRDSKSLRNFVKKLNLK 90
L R+ R+ + RL L ++ ++L
Sbjct: 26 WFRARRVTLASRLAPALRPRDATSGLLREQPVRSPFPVVERLLAPWLADLAHWFERLGSP 85
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ +L AG S S++ ++V L++G++ +
Sbjct: 86 RA----EVRRRLDRAG--STESVDQFRARQVVWTGAGLVVGLVLALLIGAARGFAPVPLA 139
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
V++ G GF A ++ + +R+ + +P +LL + V +G + AL RVA
Sbjct: 140 ALVLISGACGFAACDQVLTRQISQREERMVAEFPTIAELLALAVTAGEAPISALERVA-- 197
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
LS E+ T+A++ +A + +RT + + + + + GT + +
Sbjct: 198 -ATARGELSVEIRRTLADVRAGAPIALALTDMADRTGLPSLTRFAEGVAVALERGTPLAE 256
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
LR + R + + VP++ LP+ ++ I P++ ++
Sbjct: 257 VLRAQAQDVRESGRRALMEAGGRKEVVMLVPVVFLILPITVVFAIYPSLATL 308
>gi|323529156|ref|YP_004231308.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386158|gb|ADX58248.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 293
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 2/223 (0%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ + + L+ + +I + + V +I
Sbjct: 66 RKLVAKTELQLRLTSLTFLMNAHQFIALSIIGAALASLLALLAMLALGVFSVLVLIGAAL 125
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+G+ P +W ++ ++R + I + LD L + VE+G++I+ A+++ E G + P
Sbjct: 126 LGYFYPRIWTRDVRRRRVAQILKHLSIYLDFLTLAVEAGLNINGAIQKAVE--KGPAGPF 183
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
E+ + +L NR A +R ++ V N A++Q++R G + SLR +
Sbjct: 184 RWELEHVLRDLKSGLNRTEALRRLDDRLRIKEVTNFVGAVVQAERMGAGLAKSLRFQSEQ 243
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
RSER AEK+A KL P+++F P+ +V+ P +
Sbjct: 244 RRSERFQRAEKQAMEAPVKLVFPLLVFIFPITFIVLGFPIAMK 286
>gi|170732851|ref|YP_001764798.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169816093|gb|ACA90676.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 332
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/320 (18%), Positives = 128/320 (40%), Gaps = 11/320 (3%)
Query: 13 ELAVAITTAVSIFSLIYA-----VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ V + A++I ++ ++ +L + ++ +
Sbjct: 15 SVGVLLLAALAIVRIVLVQRAERALLHALDRRAAAVEAAAARAGSADAAREAAAPVAPRV 74
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+RLR R ++ L+ + L GF + + + R+V I+
Sbjct: 75 RFARLRERFEDVGMRWLD-TGFSRYLIADEDRRLLEQCGFVDVRARALFVGARIVCAILL 133
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ + G + +P L + G+ P +++ R+ S+ P +
Sbjct: 134 PALAVLVLIGRGQQARWPLWLSI-----ALVTGYMLPKIYVRRRATARRQSLGAELPLLV 188
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L + G+S+DQ+++ V D LS E+ + + + R+ + + N
Sbjct: 189 DMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQSLQRLTNSFD 248
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+ L
Sbjct: 249 NEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLL 308
Query: 308 PVLILVIIGPAILSIIDTMK 327
P L++V GP I++++ +
Sbjct: 309 PALLIVTAGPGIMTVLSALA 328
>gi|153950588|ref|YP_001399590.1| type II secretion system protein [Yersinia pseudotuberculosis IP
31758]
gi|152962083|gb|ABS49544.1| type II secretion system protein [Yersinia pseudotuberculosis IP
31758]
Length = 277
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 1/204 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ IL I+ I ++ + + +L P + I N + KR +++ ++ P
Sbjct: 74 IVIFILSILAILAIFNVVNINQKTLLTIGLLSIISTLYLPRMIIKNALTKRTNTLLKSLP 133
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+ CV+SG++I+ +L + + L M + A +
Sbjct: 134 FFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEIN-GLENAIKELQY 192
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ ++ L S +G+++ + L L + R +L+ E+ + L KLT+P+ +
Sbjct: 193 YSPAIEMKMFCSTLQYSLSFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFL 252
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
F L +L++I P+IL +++ +K+
Sbjct: 253 FILIPFVLLVISPSILELLNYVKN 276
>gi|293606486|ref|ZP_06688844.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292815109|gb|EFF74232.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 330
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/300 (17%), Positives = 114/300 (38%), Gaps = 6/300 (2%)
Query: 32 VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLN--- 88
+ + R + V + R+ + + + ++ F K+L+
Sbjct: 28 GVSMTRRLRGQGRSRQVIDQALATRQGGGAAAAPVEGNPGRLSSAARVADAFGKRLSEGR 87
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLN-ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L L+ + AG+ + + + R + I I+ ++ K L
Sbjct: 88 LADTLLAAEDRKMVDMAGYANAGTARSRFVAARFGLAIALPIVAVL--IDLHKSLTNSSM 145
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
A +G+ P +S + +R+ P +DLL + G+SIDQ+++ +
Sbjct: 146 GVFIAAFFGFAIGYMLPKWVVSRRLARRKRMAGDELPLLIDLLRLLQGVGLSIDQSMQVL 205
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
++ LS E+ L R+ + D + + + Q D++G +
Sbjct: 206 IKEFAQVLPVLSYELRLASEGYVRGRTREQSLARLATGFDNDDLSAICRLIAQVDQHGGA 265
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + L R +R +E ++K A K+T MI+ LP L++V G ++++ +
Sbjct: 266 VQEPLNRFGERLRDKRRLELKEKVAKTTVKMTGVMIVTLLPALLIVTGGAGFIAVLRGLS 325
>gi|237798377|ref|ZP_04586838.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021229|gb|EGI01286.1| type II secretion system protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 295
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 113/275 (41%), Gaps = 6/275 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFV--KKLNLKAILVDENIVNKLRAAGFRSEYS 112
R++ + + +R SL + ++ ++I +D L G+R
Sbjct: 23 RRRRNERLVAQRLRGKVVRESRIGSLLRLLGDTRIGQRSISLDSETQVLLNRIGWRRARK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VPI + + + + K +E P + A + G+ P ++ +
Sbjct: 83 RSLFAACQIGVPIGLMCVVALGQLLFFKNIEQP----LIAPVFALGAGYLLPKRALAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ I + LL I ESG++++QALR ++ + LSEE+ + +A +
Sbjct: 139 KRRQKQIVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLARVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKMAALLDVDELSDTCIILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K+++ M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSMVMMVFLFPALLIVLAGPGFIAISRALG 293
>gi|115361040|ref|YP_778177.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115286368|gb|ABI91843.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/320 (17%), Positives = 113/320 (35%), Gaps = 25/320 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ I T V++ I V R LR +
Sbjct: 1 MDSIYYGFVILTFVAVVLAIEGVYQWWNARHGAAARRIE-----SRLRAMSAGGSVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + + L+ +G ++++ L+ + V+P+
Sbjct: 56 LSILKKRMLDESKPF--DRLLMRVPRIQALDLVLQQSGL--DWTVAKLVTISAVLPVTAA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + L + AV+ I + C P++++ +R ++R PD D
Sbjct: 112 LALAV------------TPLPLIAVLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S AL V E+ P+ E +T E+++ + A N R
Sbjct: 160 MIARALRSGHSFSSALGMVGEEFPD---PMGGEFRITFDEINYGVSLHDALVNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ I+ LP
Sbjct: 217 HDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIGPAILSIIDTMKD 328
++ + +
Sbjct: 276 FGTAAMMAMMNREFLSVLWQ 295
>gi|16127171|ref|NP_421735.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|221235972|ref|YP_002518409.1| TadB-like pilus assembly protein [Caulobacter crescentus NA1000]
gi|7208429|gb|AAF40196.1|AF229646_8 TadB [Caulobacter crescentus CB15]
gi|13424567|gb|AAK24903.1| hypothetical protein CC_2941 [Caulobacter crescentus CB15]
gi|220965145|gb|ACL96501.1| TadB-related pilus assembly protein [Caulobacter crescentus NA1000]
Length = 325
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/313 (16%), Positives = 117/313 (37%), Gaps = 20/313 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + F I + G K+ + I + + + + A++
Sbjct: 1 MLFVLAGILGFITIAGLGFAFAGGDSASS--KAAKRAQIIAKGGERQANVRAKAAANTPD 58
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+++ +K + K +I +L+AAG + F I+
Sbjct: 59 ARRQAILKALKDQDRKQKKASLSIAARLQAAGLGDNVKM-------------FWIVSGTL 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
++ Q + A+ G P + L + R A+ DA+D+++ +
Sbjct: 106 GLFIAMIILLLGQSPLVALGAGFAAGAGLPRWVLGFLAKGRTQKFTEAFADAVDIIVRGI 165
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+SG+ + L+ + ++ PL+ E + ++ A E Y R + +R
Sbjct: 166 KSGLPVHDCLKIIGKECPE---PLAGEFRILTENVAMGVPMDAALEKMYERMPTNELRFF 222
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--VLIL 312
L + G ++ ++L L + RS +LM+ + KA S + +I P V ++
Sbjct: 223 AIVLAIQQKTGGNLAEALGNLSAVLRSRKLMKEKIKALSAEAVASAFIIGCLPPGVVTLI 282
Query: 313 VIIGPAILSIIDT 325
+ PA ++ + T
Sbjct: 283 SVTSPAYMAPMFT 295
>gi|119961380|ref|YP_948378.1| type II secretion system protein subunit F [Arthrobacter aurescens
TC1]
gi|119948239|gb|ABM07150.1| putative type II secretion system protein F domain [Arthrobacter
aurescens TC1]
Length = 313
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 106/284 (37%), Gaps = 6/284 (2%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
+ V +P + R++ + + + T + +R+ + +
Sbjct: 21 LIVVRLPFMRGTRFADRIEPQLKSQNLESRLLRTPTHNLTPFGPFERILRPIIRDALTSM 80
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+ + + + + KL AG S+ S +L+ +L I+ + +
Sbjct: 81 S-RFNVGNTALAKKLARAG--SKKSTLDFRAEQLLWAGAAFVLSIVVVVAGASAGRFSPA 137
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ +VI G+ + +++R+S + +P +L+ + V +G + A+ +
Sbjct: 138 VSCSSVIASALGGYLLRDYALGLRIKRRESRMLSEFPSLAELMALAVAAG---ESAMGAM 194
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ LS E +A+ A + F +R+++ + L+ + GT
Sbjct: 195 DRVSRSSNGELSAEFATILADTRSGKPLTEALQAFSSRSELPPLVRFIDGLMVAVERGTP 254
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ D LR ++ R + + A + VP++ LP+ +
Sbjct: 255 LADVLRAQAADVRDAAKRDLMESAGRKEIAMMVPLVFGVLPLTV 298
>gi|152981972|ref|YP_001355002.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
gi|151282049|gb|ABR90459.1| Flp pilus assembly protein TadC [Janthinobacterium sp. Marseille]
Length = 317
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/292 (20%), Positives = 114/292 (39%), Gaps = 8/292 (2%)
Query: 39 GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL--NLKAILVDE 96
+L + M+S +++ Q+ +K LR L + L LV
Sbjct: 27 RQLWQFMRSERTLEKMIDVQEHPGAEKLPEGPVLRRWMDGFLAYMAHWVDTPLGKQLVAP 86
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
L G + R+++ I I + E Q + AV
Sbjct: 87 EDRTLLDQCGVNDSRGKTLFFATRVLLGIGLPIFAWLLF------AEKSIQTLLLAVFFG 140
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
+G+ P + ++R+ P +DLL + G+SIDQ+L V +
Sbjct: 141 FALGYMGPKWVMQIRARERRQQANEELPLLIDLLRLLQGVGMSIDQSLHVVENEFSTSLP 200
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L +E+ + + R+ + F + + + + + ++Q DRYG ++ L+
Sbjct: 201 VLGKELQIAAQQYQNGRTREQSLRRFSSLFENEDMSAVARLIVQVDRYGGAVQQPLQQFS 260
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R +R ++ ++K L K+T M++ LP L+++ G L+II T+
Sbjct: 261 DRLREQRKLDMKEKVGKLTVKMTGVMVLALLPALLIITGGAGFLAIIRTLSK 312
>gi|116689547|ref|YP_835170.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|116647636|gb|ABK08277.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 332
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/320 (18%), Positives = 128/320 (40%), Gaps = 11/320 (3%)
Query: 13 ELAVAITTAVSIFSLIYA-----VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ V + A++I ++ ++ +L + ++ +
Sbjct: 15 SVGVLLLAALAIVRIVLVQRAERALLHALDRRAAAVEAAAARAGSADAAREAAAPVAPRV 74
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+RLR R ++ L+ + L GF + + + R+V I+
Sbjct: 75 RFARLRERFEDVGMRWLD-TGFSRYLIADEDRRLLEQCGFVDVRARALFVGARIVCAILL 133
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ + G + +P L + G+ P +++ R+ S+ P +
Sbjct: 134 PALAVLVLIGRGQQARWPLWLSI-----ALVTGYMLPKIYVRRRATARRQSLAAELPLLV 188
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+L + G+S+DQ+++ V D LS E+ + + + R+ + + N
Sbjct: 189 DMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQSLQRLTNSFD 248
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+ L
Sbjct: 249 NEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLL 308
Query: 308 PVLILVIIGPAILSIIDTMK 327
P L++V GP I++++ +
Sbjct: 309 PALLIVTAGPGIMTVLSALA 328
>gi|207728102|ref|YP_002256496.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
gi|206591347|emb|CAQ56959.1| pilus assembly protein tadb [Ralstonia solanacearum MolK2]
Length = 325
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 115/321 (35%), Gaps = 27/321 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPS-LGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D + ++ V+I + + + + KR+ L+ ++S +
Sbjct: 1 MDTLVIGFVLSVFVAIALGVSGLYLWWDSSHSQTAKRLSQ------RLKMALLSSARHGG 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R L + + L +G +S L + L +P++
Sbjct: 55 DESILKQRVLAESPEVAA--MLGRLPRIAQLDRILLQSGL--NWSAGRFLALSLGLPVVV 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ P A + + PS ++ +R ++ P+A
Sbjct: 111 IV------------GMSPLNPPWMATLALAVAAGSLPSFYVMYRRTRRLLRLEAQLPEAT 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S+ AL +++ P+ E+ + ++++ + A +R
Sbjct: 159 DLISRALRAGHSLPSALEMAGDELP---QPIGPELAIVFGQINYGVSMNDALAGLIDRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D +R A++ G ++ + L + + R + + + S +L I+ L
Sbjct: 216 VDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRL-GGWILTAL 274
Query: 308 PVLILVIIGPAILSIIDTMKD 328
P + V++ ++ T+
Sbjct: 275 PPAMAVVVYQLNPELMSTLWK 295
>gi|172065280|ref|YP_001815992.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171997522|gb|ACB68439.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/308 (17%), Positives = 110/308 (35%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ I T V++ I V R LR +
Sbjct: 1 MDSIYYGFVILTFVAVVLAIEGVYQWWNARHGAAARRIE-----SRLRAMSAGGSVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + + L+ +G ++++ L+ + V+P+
Sbjct: 56 LSILKKRMLDESKPF--DRLLMRVPRIQALDLVLQQSGL--DWTVAKLVAISAVLPVTAA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + L + V+ I + C P++++ +R ++R PD D
Sbjct: 112 LALAV------------TPLPLIVVLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S AL V E+ P+ E +T E+++ + A N R
Sbjct: 160 MIARALRSGHSFSSALGMVGEEFPD---PMGGEFRITFDEINYGVSLHDALVNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ I+ LP
Sbjct: 217 HDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAAMMA 283
>gi|296156493|ref|ZP_06839331.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295893092|gb|EFG72872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 325
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/317 (16%), Positives = 112/317 (35%), Gaps = 28/317 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + A+ +++ I V + K V E +R
Sbjct: 1 MNTSFIGFAVLAFLAVVLSIEGVYLFWTSHHS-----KGVKRMDERIRALSAGGNVSSEQ 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + L + + +L+ +G ++S+ + L+ +
Sbjct: 56 LSILKRRMLSD--SPFVTSLLLRMPRVHALDRQLQQSGL--KWSVARFIAYTLLSALTGA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G + L + V P++ + +R ++R PDA D
Sbjct: 112 FAGFVLHVPAPVLG------------VFAAVAGLLPTMIVRRKRVRRILQLERQLPDAAD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G S L V +++ PL E L E+++ + A N +R +
Sbjct: 160 LIARALRAGHSFPATLGMVGQELPD---PLGGEFALVFDEINYGVSMNDALLNMVSRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +R A++ G ++ + L + R + + + S +L+ ++ LP
Sbjct: 217 EDLRYFVIAVLIQREAGGNLAEILGSISGIIRERLKLLGKVRVLSAEGRLSA-WVLAVLP 275
Query: 309 VLILVI---IGPAILSI 322
IL + + P +S+
Sbjct: 276 FAILGLLTVLNPGYISV 292
>gi|167836788|ref|ZP_02463671.1| type II secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 267
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 98/252 (38%), Gaps = 6/252 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + L +V E L G+ ++ + L R+ I +
Sbjct: 17 DRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGVFLSARIACAIALPAAVALA 76
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + V L GF P +++ R+ S+ P +D+L +
Sbjct: 77 GGETVRTHLTAW------VALCVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQ 130
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G+S+DQ+++ V D G LS E+ + + R+ + + + +R
Sbjct: 131 GVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAI 190
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ D++G ++ + L+ R R ++ L K+T MI+ LP L +V
Sbjct: 191 VRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVT 250
Query: 315 IGPAILSIIDTM 326
GP +L++ +
Sbjct: 251 AGPGMLAVTHAL 262
>gi|107022598|ref|YP_620925.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|105892787|gb|ABF75952.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
Length = 321
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/323 (17%), Positives = 125/323 (38%), Gaps = 10/323 (3%)
Query: 9 FDATELAVAITTAVSIFSLIY----AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
DA L + ++ ++ +L + ++ +
Sbjct: 1 MDANRLGALALVLAIVRIVLVQRAERALLHALDRRAAAVEAAAARAGSADAAREAAAPVA 60
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+RLR R ++ L+ + L GF + + + R+V
Sbjct: 61 PRVRFARLRERFEDVGMRWLD-TGFSRYLIADEDRRLLEQCGFVDVRARALFVGARIVCA 119
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ L ++ + G + +P L + G+ P +++ R+ S+ P
Sbjct: 120 ILLPALAVLVLIGRGQQARWPLWLSI-----ALVTGYMLPKIYVRRRATARRQSLAAELP 174
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + G+S+DQ+++ V D LS E+ + + + R+ + + N
Sbjct: 175 LLVDMLRLLQGVGLSLDQSIQVVTHDFQTMLPVLSWELGVAQRQFAAGRTREQSLQRLTN 234
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+
Sbjct: 235 SFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIV 294
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
LP L++V GP I++++ +
Sbjct: 295 TLLPALLIVTAGPGIMTVLSALA 317
>gi|297618077|ref|YP_003703236.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145914|gb|ADI02671.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 329
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/289 (12%), Positives = 95/289 (32%), Gaps = 28/289 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V ++ + + + L R V E + +K+ ++ L+
Sbjct: 15 MGFVLVMVFFTAMFFTLALV-----RLLDRKSEVKDRLERYIAGNAENEKKEKSTPALKA 69
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ F + E I +L AG + + + +++ + +
Sbjct: 70 GFERMASVFASR------SYTEKIQVELLQAGLPLKG--EEFITLWVLLATAIPAMTWLV 121
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + P ++ + +R + + DAL ++ +
Sbjct: 122 TRNWPLAILVLLLAV------------FGPRFYLQHKKGERLKTFNQQLGDALVIMANAL 169
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G QA+ V ++ P+S E T+ E+ + + N R + D +
Sbjct: 170 RAGFGFQQAMETVRREL---PPPISTEFEWTLREIQLGSTTEESLLNLCERVKSDDLDMV 226
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
A++ + G ++ L + R ++ E + + +L+ +I
Sbjct: 227 VTAVLIQRQVGGNLAQILDNISRTIRDRTRIKGEIRTLTAQGRLSGIII 275
>gi|154250530|ref|YP_001411354.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154480|gb|ABS61697.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 315
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/279 (18%), Positives = 120/279 (43%), Gaps = 6/279 (2%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ V + + + L L +++ V+ + AGF
Sbjct: 29 LLVRHREVSARLSLLFTPEREYGTLTETALVLLERLGRRIE--GTRVNRELRQLALRAGF 86
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
S+ + + +R V + ++ ++ P + + GY+ + +
Sbjct: 87 FQPSSVYVFVALRYGVALAIGLVIVLAR----SDGGVPAVADILYGVFFGYLFYRYVLIA 142
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ +R ++I+R P LD++L+ +++G+S+DQ +R VA + + + + IA
Sbjct: 143 LGVYADRRANTIRRELPPVLDIMLMALDAGVSVDQCMRYVAGVVRRTAPVTGKVLRRHIA 202
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ A + R +D ++ + Q+ G + +LR + +R+ A
Sbjct: 203 DIDAGMPYDAALDRLGQRLGLDEGQDLAATIKQALFQGGELSTTLRRFSVDLSDKRMGMA 262
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ P+LT+ MI+FF+PVL++V+ GPA++++ +
Sbjct: 263 REQVGRKAPQLTLVMILFFMPVLLIVLAGPAVVTLQGAL 301
>gi|220923699|ref|YP_002499001.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219948306|gb|ACL58698.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 327
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/314 (16%), Positives = 113/314 (35%), Gaps = 19/314 (6%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + +++ + R ++ +++R + + + R
Sbjct: 1 MLLPLLVFFLGAFSTGGLLLAAF--HPRLARTSALDRRLQLVRASAGQTTRAAGSDDNRR 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R + L ++ ++V +LR A S I L +G +
Sbjct: 59 KRSVQELLRETEQKQKAKNSAKLSLVMRLRQADLGWSKSTYY---------TICLTVGTL 109
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L+ VG + G P +++S ++R +P+A+D+++
Sbjct: 110 AFLAMWGLMGLGLLPAVGFGLCG---GMLLPHLYVSARRKRRFKRFAAEFPNAIDVIVRG 166
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V++G+ + L VA P+ E + + + Q A E R + R
Sbjct: 167 VKAGLPLVDCLNIVA---AEAQEPVKSEFRALVEDQTLGMPLQDAVERLPERMPLSEARF 223
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--I 311
+ R G S+ ++L L R + M+ + KA S K + +I V+ +
Sbjct: 224 FAIVIAIQSRTGGSLSEALGNLSRVLRERKKMQGKIKAVSSEAKASAGIIAALPIVVGSL 283
Query: 312 LVIIGPAILSIIDT 325
+ + PA ++++ T
Sbjct: 284 VYLTSPAYMALLFT 297
>gi|170700845|ref|ZP_02891834.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170134253|gb|EDT02592.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 104/308 (33%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ I T V++ I V R LR +
Sbjct: 1 MDSIYYGFVILTFVAVVLAIEGVYQWWNARHGAAARRIE-----SRLRAMSAGGSVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + + L+ +G + L
Sbjct: 56 LSILKKRMLDESKPF--DRLLMRVPRIQALDLVLQQSGLD--------------WTVAKL 99
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + L+ L + V+ I + C P++++ +R ++R PD D
Sbjct: 100 VVISAVLAVTAALVLTVSPLPLITVLPIALLTACLPAMYVMRHRNRRMLKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S AL V E+ P+ E +T E+++ + A N R
Sbjct: 160 MIARALRSGHSFSSALGMVGEEFPE---PMGGEFRITFDEINYGVSLHDALVNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ I+ LP
Sbjct: 217 HDLRYFVIAVLIQRETGGNLAELLDSIASLVRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAAMMA 283
>gi|253996762|ref|YP_003048826.1| type II secretion system protein [Methylotenera mobilis JLW8]
gi|253983441|gb|ACT48299.1| type II secretion system protein [Methylotenera mobilis JLW8]
Length = 322
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/321 (18%), Positives = 125/321 (38%), Gaps = 33/321 (10%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDS 67
D AI +++ + + G KR++ R+ + +L K+
Sbjct: 1 MDYLYYLFAILAFLAVVLFLEGAYLAWNAYKGPEAKRIE---------RRLEAMTLGKEH 51
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S+ ++ R + L+ + + + L +G +YS+ L + L+ ++
Sbjct: 52 ESTLVKQRMLANTPGVAS--MLQQVPRIQQLDKALLQSGL--QYSVAKFLGICLMFAVVG 107
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + + V I++ V C P + + + QKR ++I++ P AL
Sbjct: 108 FAIALYFG------------ANVLVSIIVAAVAACLPLLHMFSAKQKRINTIEQQLPSAL 155
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G + AL+ V ++ P++ E + E+++ A N R
Sbjct: 156 DLMGRAMVAGHAFPSALQMVGTEMPE---PIASEFRIVFDEINYGIPTSEALMNLIQRVP 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
V A++ G ++ + L + R+ + + S +L+ I+ L
Sbjct: 213 STDVSYFVIAVLIQRETGGNLAELLGNISELIRARLKLLGSVRVLSAEGRLSA-WILTLL 271
Query: 308 PV---LILVIIGPAILSIIDT 325
P +L ++ P LSI+ T
Sbjct: 272 PFALGAVLQLVNPKFLSILWT 292
>gi|303241710|ref|ZP_07328207.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302590711|gb|EFL60462.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 327
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/312 (17%), Positives = 125/312 (40%), Gaps = 21/312 (6%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ ++ VS Y ++ +G R+ E++ ++ ++ L
Sbjct: 5 ILVSAFVSALLFSYQILKFLIGKQTPIMRLTRYTNLMEMVGGEEKRRSKQKEYKVGL--- 61
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ VK+ + I +L+ A ++++ I I+
Sbjct: 62 --GFISRGVKEAKSLDGYK-KKIQLELQRA----------HILLKPEEYITVSIILFFAF 108
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ +L L + I+ G +G+ PS++I ++KR + DA+ L+ ++
Sbjct: 109 GTFMFVLASSSSLAILVAIVGGVIGWVLPSLYIKIKIKKRLRILNDQLNDAIVLISNSLK 168
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S QA+ V++++ + P++EE E++F + A EN R D +
Sbjct: 169 AGYSFFQAVDIVSKEM---TGPMAEEFAQLQKEVNFGTTTEKALENLVTRVTSDDLELVV 225
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV--LILV 313
A++ + G ++ + L + + R ++ E K + +++ +I P IL
Sbjct: 226 TAVLIQRQVGGNLSEVLDNISTTIRERIRIKGEVKTVTAQGRMSGMIIAALPPALGFILF 285
Query: 314 IIGPAILSIIDT 325
+I + + ++ T
Sbjct: 286 LINKSHVMVLFT 297
>gi|167620218|ref|ZP_02388849.1| hypothetical protein BthaB_28185 [Burkholderia thailandensis Bt4]
Length = 268
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 6/266 (2%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ + + + L +V E L G+ ++ I L R
Sbjct: 4 AAPHARRSRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSAR 63
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ I ++ + + V L GF P +++ R+ S+
Sbjct: 64 IACSIALPAAVALFGSATVRTHLSAW------VALSVIAGFMLPKIYVRRRAAARRQSVV 117
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 118 DEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQ 177
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ +R + LIQ D++G ++ + L+ R R ++ L K+T
Sbjct: 178 RLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTG 237
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
MI+ LP L +V GP +L++ +
Sbjct: 238 VMILTLLPALFIVTAGPGMLAVTHAL 263
>gi|85713509|ref|ZP_01044499.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699413|gb|EAQ37280.1| type II secretion system protein [Nitrobacter sp. Nb-311A]
Length = 324
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/320 (18%), Positives = 124/320 (38%), Gaps = 29/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDS 67
+ LA+ A ++ + + + P+L + EKR + A +R+
Sbjct: 1 MNLQTLALGFMAATAVGGVAWVFLYPALSGEMKAEKRRAAFARTTPAIRQVDRAQR---- 56
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R + SLR ++ L + +++ AG +S L+V V+ +I
Sbjct: 57 ---SRREQIEGSLREIEQRQKRDRKL---TLNHRIAQAGL--SWSKEKFLIVSGVLAMIC 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +I G F G P + L Q+R+++ RA PDA+
Sbjct: 109 FSVPMILGAGPLAAAGLAFAAGFGV-----------PRWLLGFLKQRRETAFLRALPDAV 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+++ +++G+ + ++L+ V + PL E I + A Y R
Sbjct: 158 DVIVRGIKAGLPLFESLKVV---VADSPEPLKSEFAAIIETQAVGMPLGEACSRLYERMP 214
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G ++ ++L L R + M + KA S K + +I
Sbjct: 215 VPEANFFGIVIAIQQKSGGNLSEALGNLSKVLRDRKKMAEKIKAVSTEAKASAAIIGSLP 274
Query: 308 PVLILV--IIGPAILSIIDT 325
P+++L+ + P ++++ T
Sbjct: 275 PIVMLLVYLSTPDYIALLWT 294
>gi|218530658|ref|YP_002421474.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
gi|218522961|gb|ACK83546.1| type II secretion system protein [Methylobacterium chloromethanicum
CM4]
Length = 323
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/297 (17%), Positives = 112/297 (37%), Gaps = 28/297 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
AV+ SL Y ++P+L ++ + + + + ++ + +
Sbjct: 8 LAVGLVAVAAGSLAYVFLMPALSGERRAEQRRRALGQPQAVLAERGAAASRREQ------ 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ +K+L K + +L AG ++S VV + ++ + +
Sbjct: 62 -----VAKSLKELEAKKDKTKVTLELRLARAGL--DWSRQKYRVVSAITAVVLALAAFLV 114
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ A + + GF P+ W+ ++R + P+A+D+++ +
Sbjct: 115 SHNV-----------IVAGLALFVGGFGLPAWWLKRRQKRRVEAFIEELPNAMDVVVRGL 163
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SGI + LR +A PL E +T+ + + A Y R + V
Sbjct: 164 RSGIPLGDCLRMIAR---EAKEPLRSEFRVTMESQALGLSMSDAILRMYERVPVTEVNFF 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + G ++ ++L L R + M + +A S+ K + II LP ++
Sbjct: 221 SIVIGIQQKAGGNLSEALGNLSRVLRERKKMAGKIQAMSMEAKASAA-IIGALPFVV 276
>gi|238762413|ref|ZP_04623384.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
gi|238699398|gb|EEP92144.1| Type II secretion system protein [Yersinia kristensenii ATCC 33638]
Length = 272
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/208 (22%), Positives = 95/208 (45%), Gaps = 1/208 (0%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ + II + L + + L + + +++ + P + N++ R
Sbjct: 63 YNIAYFKLMIIIISLVVTVVLTALNLFSINLKNILIVGVIMLIMMLYLPKYIVKNIITSR 122
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
S+ ++ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 123 NKSLLKSLPFFIDITAACVQSGMTIDSSLSYTAKKFELINADLSLIMLKVTRRAEIN-GL 181
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A + F+ + +R AL S +G ++ + L L + R +L+ E+K + L
Sbjct: 182 ESAIKEFHQSSTELEIRMFCSALQYSISFGATVYEQLIKLSQDMREMQLLVTEEKISKLT 241
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSII 323
KLT+P+ +F L I+++I P++L ++
Sbjct: 242 AKLTIPLFLFILIPFIILVISPSVLELL 269
>gi|21673274|ref|NP_661339.1| TadB protein [Chlorobium tepidum TLS]
gi|21646363|gb|AAM71681.1| tadB protein [Chlorobium tepidum TLS]
Length = 305
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 100/240 (41%), Gaps = 7/240 (2%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+L L + + LR+ E +N++ R ++ ++ +F L +
Sbjct: 39 SLLTNLEEHELETWLRSRSRAFEKLVNLVQQSRSSFSAGSVLGLMLALFAVVLLAGLLTK 98
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ ++++ P +W+S +KR+ + + P+ALD + + +G S+ A+ +
Sbjct: 99 TNILFLLVLAVAIASMPVMWLSRKAKKRRMAFEAKLPEALDYISRSLRAGHSLSSAIGMI 158
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
++ PL E E++F + AF + NR + + + AL+ G +
Sbjct: 159 GKEFPD---PLGGEFKTVFDEMNFGIPFKEAFAHLSNRIRSNDISFFVIALMIQHETGGN 215
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAILSIID 324
+ + L L + R + + + S +++ +++ +P + + +I P + +
Sbjct: 216 LAELLGGLATTIRERFKLRGKVRTLSSEGRISA-LVLGSMPFVFATIISLINPRYILPLF 274
>gi|326424177|ref|NP_762076.2| type II/IV secretion system protein TadC [Vibrio vulnificus CMCP6]
gi|319999560|gb|AAO07066.2| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Vibrio vulnificus CMCP6]
Length = 292
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 121/290 (41%), Gaps = 27/290 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I A+ I ++ + E ++ + + +K+
Sbjct: 9 IFIFVALIISVVVAVFALKVWDETRAEISVRKIIGSTKEQKKRD---------------- 52
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+F K+ + + KL AAG S++ + +++ P+ IL +++
Sbjct: 53 --DLFLSFFKRFSFNK----DETKKKLVAAGVYSDFIAQTYYLFKII-PLFLTILISVYL 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L L + ++I VG P ++IS+ I P LDL+ +CV
Sbjct: 106 MSIKVLDTNELILTIALGMVIFVVG---PDMYISSRANSITRHISSRLPFLLDLMNVCVH 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G++I+ L +A+++ L+ + +T+ A E FY ++
Sbjct: 163 TGMTIEATLEYLAKELQTVDKYLAFTVNVTVQRSKV-IGINKALEEFYEMVPSSEAQSFV 221
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
LIQS ++G+S+G L L ++ R +ME E+K LG K+++PMI+F
Sbjct: 222 MTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIPMIVF 271
>gi|83749634|ref|ZP_00946617.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|207744162|ref|YP_002260554.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
gi|83723695|gb|EAP70890.1| TRANSMEMBRANE TIGHT ADHERENCE TADB-RELATED PROTEIN; tadB1
[Ralstonia solanacearum UW551]
gi|206595566|emb|CAQ62493.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
Length = 325
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 116/321 (36%), Gaps = 27/321 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPS-LGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D + ++ V+I + + + + KR+ L+ ++S +
Sbjct: 1 MDTLAIGFVLSVFVAIALGVSGLYLWWDSRHSQTAKRLSQ------RLKMALLSSARHGG 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R + L + + L +G +S L + L +P++
Sbjct: 55 DESILKQRVLAESQEVAA--MLGQLPRIHQLDLILLQSGL--NWSAGRFLALTLGLPVVV 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ P A + + PS ++ +R ++ P+A
Sbjct: 111 IV------------GVSPLAPPWMATLALAVAAGSLPSFYVMYRRTRRLLRLETQLPEAT 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S+ AL +++ P+ E+ + ++++ + A +R
Sbjct: 159 DLISRALRAGHSLPSALEMAGDELP---QPIGPELAIVFGQINYGVSMNDALAGLIDRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D +R A++ G ++ + L + + R + + + S +L I+ L
Sbjct: 216 VDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRL-GGWILTAL 274
Query: 308 PVLILVIIGPAILSIIDTMKD 328
P + V++ ++ T+
Sbjct: 275 PPAMAVVVYQLNPELMSTLWK 295
>gi|323491539|ref|ZP_08096718.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
gi|323314115|gb|EGA67200.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
Length = 322
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 122/319 (38%), Gaps = 29/319 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ + A+++P+ GS K + R ++ S + A
Sbjct: 1 MQQDATLFFVLLFFAVVFISQALILPAAGSKAKHKELSE--------RLKESQSKLDEEA 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ KSL + ++ L I ++ + +G+ ++SL L++ +
Sbjct: 53 RSLLQEHYLKSLTPWDRR--LVKIEALSSLKKMIELSGY--DWSLTQTLMITSFASVCGF 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++ + I + W+ + R ++ + P+ALD
Sbjct: 109 FIALLIG------------QPIYVGIAAIVAVWVCLYFWLGKKISDRLAAFEEQLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V ++ P+ E T L++ + ++A RT
Sbjct: 157 IMRRMLQAGQPVTQAFNEVGVEM---PAPIGIEFKNTFNLLNYGYDMRMAIMQMAERTPT 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + A++ G ++ ++L + R+ ++ + K S +L+ +++
Sbjct: 214 VSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSAESRLSAWILVLSPF 273
Query: 309 VLILVI--IGPAILSIIDT 325
VL + + I P + + T
Sbjct: 274 VLFIFLSVINPGYVEPLYT 292
>gi|315121887|ref|YP_004062376.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495289|gb|ADR51888.1| pilus assembly protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 328
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/308 (13%), Positives = 117/308 (37%), Gaps = 20/308 (6%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+ + + + +V ++S + R+ + + +++ R + +
Sbjct: 7 SFLLVGLISISVFFLLYFLLFKTTGLESSSESRDPKKVIKDKKNDTIPSAAVKRRKVLRD 66
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ ++ + + +++ + + +G +S + V+ ++F I+ +
Sbjct: 67 AMDKIELSHKEKFGNTKSLSSLISYSGIP--FSKEHFYIFSCVMGLVFGIISLALF---- 120
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
F + + + V P V + L++KR + +P+ALD+++ V SG+
Sbjct: 121 ----SSFFVSLCVCLSSALV---VPRVLLQYLIKKRTAKFLNEFPNALDIIVRSVRSGLP 173
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ A+ + +G S P+ E + + + + V + +
Sbjct: 174 VSDAISII---VGQSSDPVRSEFRRVVEAQHLGLSVSESVARMVRYMPLQEVSFFSTVIS 230
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---G 316
+ G ++ ++L L R + M+ + +A ++ K + II LP + ++
Sbjct: 231 IQAQSGGNLSEALSNLSGILRERKKMKGKVQALAMEAKSSA-WIIGSLPFFVSSLVHFTS 289
Query: 317 PAILSIID 324
P + I+
Sbjct: 290 PGYIDILF 297
>gi|261856881|ref|YP_003264164.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837350|gb|ACX97117.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 298
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/290 (20%), Positives = 112/290 (38%), Gaps = 20/290 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V I + + G + + +D LR
Sbjct: 5 LIIILVGVLIAGSVGMLFWALTG---------------FLRDVPEADRNYQDPLPLGLRL 49
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ E + L+ AG + L +R+ + I+ +
Sbjct: 50 IWPLVNAATFVLAPRLSPDKLEKAHHTLQTAGQDFVLNPEQLYGLRV---VGAGIVVAFF 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L + L ++L +G+ PS+W++ + RQ + + P LD +++ V
Sbjct: 107 WLILAMLHKQSASLFAMTLVLGAVLGWLYPSLWLTERRKHRQRLVIKDLPVFLDFIVMAV 166
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G++I + + + G PL++E + ++ R A + R M + +
Sbjct: 167 EAGLNITGGIEQA--TLKGPKGPLAQEFRRLLRDMRSGLARAEALKRMAERMDMPQISSF 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
T LIQ+DR G S+G SLRV + R ER + AEK A K+ +P+++
Sbjct: 225 TGTLIQADRVGASLGASLRVQADQRREERFLRAEKLALEAPVKMMLPLVM 274
>gi|319788658|ref|YP_004148133.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467170|gb|ADV28902.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 296
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 57/297 (19%), Positives = 121/297 (40%), Gaps = 26/297 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ VA+ A ++ ++ R +R+ ++
Sbjct: 1 MSWMLILVALLAAGAVVLVMLG--------------------TRGAIREVELEDRTYYDP 40
Query: 69 SSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
RL + ++L + + E +L+AAG + +R I+
Sbjct: 41 LPRLMQMMWPLVTVLTRRLAPRLNVSQLEQTHRQLQAAGQDYTLTPEEFYGLRAASAIVV 100
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ ++ + KL + V+ G +G+ P++W+ + R ++ R P L
Sbjct: 101 ILFFLLCVLMLGKLGPSSV---LACVMFGGVLGWLYPALWLGERRKLRHKAVVRDLPVYL 157
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D + + VE+G+++ + + G + LS+E + ++ R A + R
Sbjct: 158 DFITMSVEAGLNVTGGIEQAVA--KGPAGALSQEFSRMLRDIRAGLPRAEALKRMSERMD 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + N T ALIQ+D+ G ++ D+LR ++ R ER + AEK A K+ +P+++
Sbjct: 216 ISQITNFTSALIQADKVGANLSDTLRAQANQRREERFLRAEKLALEAPVKMMLPLVM 272
>gi|239814536|ref|YP_002943446.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239801113|gb|ACS18180.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 330
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/324 (15%), Positives = 132/324 (40%), Gaps = 25/324 (7%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL 63
F +L T + +++ V++ +I + + + + V++ R Q +++
Sbjct: 1 MFQNLVGDTLITLSVLVFVTVLMVIEGLYMLW-------RSYRGPGVQKIGKRLQALSAA 53
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
A +RL S +++++ L + + + AG E++++ +L+ +
Sbjct: 54 TDRIAQARLVKDRVLSEAPWMQRV-LLKLPRAHRLDRFILQAGL--EWTVSHVLLACALS 110
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
++F + +L+ G P +++++ +R + ++R
Sbjct: 111 GMLFFFA-----------MTSLANQPAWIALLVSAAGAAVPLLYLNHRRSRRLAHLERQL 159
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
PDALDL+ + +G S +++ + +++ S P++ E + E+ F + Q A N
Sbjct: 160 PDALDLVTRALRAGHSFASSVQMIGDEM---SEPIAGEFRMVADEVGFGVSLQQALTNMS 216
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + +R +++ G ++ + L L R + A + S +L+ I
Sbjct: 217 ERVPLTDLRYFVVSVLIQRDSGGNLTEVLGNLSRLIRDRLKLLARVRVLSAEGRLSA-WI 275
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+ +P ++ ++ + +
Sbjct: 276 LGLMPFALVALLNAFNPEFMSPLW 299
>gi|238027558|ref|YP_002911789.1| type II secretion system protein [Burkholderia glumae BGR1]
gi|237876752|gb|ACR29085.1| Type II secretion system protein [Burkholderia glumae BGR1]
Length = 330
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/318 (19%), Positives = 120/318 (37%), Gaps = 9/318 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ V + ++I + + L++R+ + + Q L+ A
Sbjct: 16 IGVLLLAGLAIVRAMLLQRSERALASALDQRLAASRAAAARAGQAQAAELKPAEARPAGF 75
Query: 74 TRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ L LV + L G+ S + LVVRL I +
Sbjct: 76 AAWRAQAERIGMRWLDTGLGKQLVADEDRKLLEQCGYVEARSRGLFLVVRLACAIGLPLA 135
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
L + + L GF P V++ R+ S+ P +D+L
Sbjct: 136 ------ILPFLTHGGPGKWLFGLFLALAAGFMLPKVYVRRRAAARRESVADEMPLFVDML 189
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ G+S+DQ+++ + D LS E+ + + + R+ + +
Sbjct: 190 RLLQGVGLSLDQSMQVITHDFTSMLPVLSWELGVAQRQFAAGRTREQSLARLTTSFDNED 249
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R + LIQ D++G ++ + LR+ R R ++ L K+T MI+ LP L
Sbjct: 250 LRAIVRLLIQVDKHGGAVQEPLRLFGDRLREGRRATLRERIGRLTVKMTGVMIVTLLPAL 309
Query: 311 ILVIIGPAILSIIDTMKD 328
++V GP I++++ + +
Sbjct: 310 LIVTAGPGIMTVVVALAN 327
>gi|323700364|ref|ZP_08112276.1| Type II secretion system F domain [Desulfovibrio sp. ND132]
gi|323460296|gb|EGB16161.1| Type II secretion system F domain [Desulfovibrio desulfuricans
ND132]
Length = 324
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/319 (15%), Positives = 124/319 (38%), Gaps = 28/319 (8%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ L +A + +F L+ + + +R + + + D+AS
Sbjct: 1 MSMTLIIAAAAVLIVFLLVMGIGSLMQSGSDKAER------RVKDRLRAMALTADIDAAS 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
L R++ + L+++ N+ L A ++ S + L++ +++ +I
Sbjct: 55 VDLVLREAAMSEVPLFNRLLESMRWSSNLSRLLYQA--DAKGSPGVYLLLCMLLAVIGFY 112
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G F ++ + + P + +KR ++ P+ALDL
Sbjct: 113 AG-------------SFSGKIWVSLAGAIMLGYLPIWILQGKKRKRMDRFQKQLPEALDL 159
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +++G + +R VA++ G P+ E T+ E+++ + A N +R
Sbjct: 160 MARALKAGHTFGGGMRMVADEFDG---PIGPEFGKTLDEINYGMDVDRALSNLQSRVDCP 216
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ ++ G ++ + + + + R + + + S +++ I+ LP
Sbjct: 217 DLKFFVVSVNIQRETGGNLAEIIAKIAALVRERFALFGKIRVLSAEGRVSA-YILIALPF 275
Query: 310 L---ILVIIGPAILSIIDT 325
L IL ++ +S++ T
Sbjct: 276 LLTGILYVVNSDYISLLWT 294
>gi|311743760|ref|ZP_07717566.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312890|gb|EFQ82801.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 303
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/300 (16%), Positives = 107/300 (35%), Gaps = 6/300 (2%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
++ L++ + + +G + R S+ + L +R L +
Sbjct: 4 AVLGLLWGAGLCLVAAGWVRSRRPSLHDRVAPYVRDVHPVLAAGPPVGAVRAVFGPGLTS 63
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
+L + + E++ +L A +L+ +LV L
Sbjct: 64 VASRLG-ELVGSSESVQRRLDRA--SGGGTLDEFRFRQLVWTAGTLAAAGSLSGLVWWER 120
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ ++ G +S V++R+ ++ +P DLL + V +G S
Sbjct: 121 RSGAVALLAFSLIAAIGGALVCDQRLSAEVRRREQAMTEEFPAVADLLALAVAAGESPTA 180
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL+RV + L++E+ +AE+ AF+ RT + + + L +
Sbjct: 181 ALQRV---VARAHGELADELGRVLAEVRTGSTIVQAFDRLAARTGVTSIARFAEGLAVAV 237
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GT + D L ++ R + + VP++ LPV ++ P ++ +
Sbjct: 238 DRGTPVVDVLHAQTADVREAARRHLMETGGRREVLMMVPVVFAILPVTVVFAFYPGLVGL 297
>gi|163733538|ref|ZP_02140981.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
gi|161393326|gb|EDQ17652.1| type II secretion system protein, putative [Roseobacter litoralis
Och 149]
Length = 320
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/320 (16%), Positives = 120/320 (37%), Gaps = 29/320 (9%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E + + + L+ + + + G S+ + +D
Sbjct: 1 MSPEPIIYGLIFIGVLVLVEGLYLVTFGKS------ISLNSRVNRRLEMLDKGTGRDEVL 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + +++ + + L G +++ + +LV+ + L
Sbjct: 55 EKLRKEMQQHMKS-----------KSIPLYSLL---GEKAQKAAIAFTPSQLVMIMGVLA 100
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ P ++ + I +G V F W+S+ KR + I+ PDA++L
Sbjct: 101 VVAFLGLSVGTESSLPVRIMMSIGIGVGAVYF-----WVSSKANKRLAMIEEQLPDAVEL 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G A++ V++++ PL+ EM + E ++ + A + R M
Sbjct: 156 MVRSLRVGHPFSSAVQIVSKEVQD---PLASEMGVIADESAYGRDVGDALKEMAERLDMQ 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ G ++ + L L R+ + KA + K + + PV
Sbjct: 213 DLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGK-FLSAFPV 271
Query: 310 LILVIIGPAILSIIDTMKDH 329
+ L++I + D ++DH
Sbjct: 272 VALIVINVGDPNYYDAVRDH 291
>gi|167648148|ref|YP_001685811.1| type II secretion system protein [Caulobacter sp. K31]
gi|167350578|gb|ABZ73313.1| type II secretion system protein [Caulobacter sp. K31]
Length = 325
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 59/315 (18%), Positives = 125/315 (39%), Gaps = 26/315 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + ++I L + + GS + KR + +A + + + R
Sbjct: 4 IIAGVLGFITIAGLGFVLAGGDGGSAKTVKRAQLIAGGDRQAVAARAKAAANSPDARR-- 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K + +K+ + + +I +LRAAG ++ +I L G I
Sbjct: 62 ----KQILKTLKEQDQQKKKASLSIAARLRAAGLGDNT-----RNFWIISGVIGLTAGAI 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ Q+ + A+ GF P + + + R A+ DA+D+++
Sbjct: 113 LLLLR--------QMPLIALGAAFGAGFGLPRWVVGMMAKARTKKFTEAFSDAIDIIVRG 164
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++SG+ ++ L+ + ++ PL+ E + + + A E Y R + +R
Sbjct: 165 IKSGLPVNDCLKIIGKEC---PEPLAGEFRVLVENTGMGMSMDQALERMYERMPTNELRF 221
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
T L + G ++ ++L L + R+ +LM + KA S + II LP +++
Sbjct: 222 FTIVLTIQAKTGGNLAEALGNLSTVLRARKLMGEKIKALSAEAVASA-FIIGALPPGVVI 280
Query: 314 II---GPAILSIIDT 325
+I P ++ + T
Sbjct: 281 LISVTAPTYMAPMFT 295
>gi|167570100|ref|ZP_02362974.1| hypothetical protein BoklC_09666 [Burkholderia oklahomensis C6786]
Length = 261
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 99/252 (39%), Gaps = 6/252 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L + L +V + L G+ ++ I L R+ I I
Sbjct: 11 DRAGKLGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACGIALPAAVAIV 70
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
E V L VGF P +++ R+ S+ P +D+L +
Sbjct: 71 G------DETVATHLSAWVALSVIVGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQ 124
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G+S+DQ+++ V D G LS E+ + + R+ + + + +R
Sbjct: 125 GVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAI 184
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ D++G ++ + L+ R R ++ L K+T MI+ LP L +V
Sbjct: 185 VRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMIVTLLPALFIVT 244
Query: 315 IGPAILSIIDTM 326
GP +L++ +
Sbjct: 245 AGPGMLAVAHAL 256
>gi|289641000|ref|ZP_06473169.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289509120|gb|EFD30050.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 315
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 6/293 (2%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
P + L RM + + + +S + + +
Sbjct: 25 SPVVRRIRLADRMDPYLRDAPAQSRLLADRPRTTMSSRSGLEELLRPFVRDAAGRLDRFL 84
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
++ +L AG R+ S+ V +++ ++G + P + A
Sbjct: 85 GGRAALLRRLTQAGGRT--SVEEFRVQQVICSAAGALVGAFLLLVRALTGVGPPSIVGVA 142
Query: 153 VILIGYVG-FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+++ G G A W++ +++R+ I +P +LL + V +G S AL RV+
Sbjct: 143 MVVAGVAGGIVARDWWLTRAIREREERILIEFPTVAELLALAVTAGESPVGALERVSRL- 201
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L E+ L +A+ A E RT + + + + GT + +
Sbjct: 202 --SHGELGRELRLALADARAGATLVQALEGMATRTTVPSLARFVDGMAVAIERGTPLAEV 259
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
LR + R + + + VP++ F LP ++ PA++S+
Sbjct: 260 LRAQAVDVREAGKRQLLEAGGRKEIAMMVPVVFFVLPTTVIFAFYPALVSLSF 312
>gi|239908017|ref|YP_002954758.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
gi|239797883|dbj|BAH76872.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
Length = 326
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/285 (13%), Positives = 99/285 (34%), Gaps = 21/285 (7%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R+ + + R +Q+T + + + + + L + L
Sbjct: 30 RLTDTSGKEIARRVEQVTRGEGLGLDTADLVKKHELSGLRWLDVLLSRQAWSRRMDKMLD 89
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
A + L I +++ L+ + + +++ + + V
Sbjct: 90 QADI--KAPLGIFVMLSLIFAVTGYLAASLYLSN------------PLLSLAVAGVCGWL 135
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P W+ KR + +R P+AL+L+ + +G + + V + P+ E
Sbjct: 136 PFKWVVMRKDKRMADFERQLPEALELVGRALRAGHTFTSGMGMVVSEFAD---PIRVEFQ 192
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T+ E++F A +N +R + ++ + G ++ + + + R
Sbjct: 193 TTLEEINFGMGVTTALDNLMDRVDCPDLNFFVVSVKIQNESGGNLAEIIGNISGLIRERF 252
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSIIDT 325
++ + S ++ ++ LP ++ + P L ++ T
Sbjct: 253 KLKGRIQVLSAEGRM-AAWVLCLLPFGVAAVIQFVNPGYLGLLFT 296
>gi|251791986|ref|YP_003006706.1| TadC [Aggregatibacter aphrophilus NJ8700]
gi|247533373|gb|ACS96619.1| TadC [Aggregatibacter aphrophilus NJ8700]
Length = 288
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/204 (20%), Positives = 97/204 (47%), Gaps = 4/204 (1%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
V+L++ I+ ++ + ++++ + P ++++++ +
Sbjct: 84 VKLLIMIVLCGACYLYSLNDSNPNSSSLLISFLTILVVTII---IPGFLVNSILKSKIKK 140
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I +DL+ + V++G+SI+ AL++VA D + L+ ML I + A
Sbjct: 141 IMNDLAGFIDLVAVNVQTGVSIEAALKQVATDFKTLNPDLTYVMLRIIRKSEI-TGMSQA 199
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
++ +R + QS +G+SI L L S+ R +L+ E+K +L K+
Sbjct: 200 LQDLSISLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSSDIRELQLLTIEEKLGTLAAKM 259
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
++P+I+F + +I++I+ P ++ +
Sbjct: 260 SIPLILFIMFPIIILILAPGVMRV 283
>gi|82703470|ref|YP_413036.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
gi|82411535|gb|ABB75644.1| type II secretion system protein [Nitrosospira multiformis ATCC
25196]
Length = 323
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/320 (15%), Positives = 117/320 (36%), Gaps = 30/320 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D I +++ L+ + + +R R Q +++ D+
Sbjct: 1 MDILYYLFLIFCFLAVVLLLEGGYLAWHAH-------RGPEAKRIQERLQAVSAGWGDAE 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ ++ R + + L I ++ L+ +G + L + + +
Sbjct: 54 TGLMKQRLLSNSPALERF--LLQIPRIHSLDRLLQQSGM--SLMVTHFLGYTAMTALGGM 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +L G G P + + +KR I+R P+ +D
Sbjct: 110 ACAALLGL------------PFAVTLLCGATGSVLPLFFTLSAKRKRLEKIERQLPEVID 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ +++G + AL+ + P ++E LT E++F + Q A N R +
Sbjct: 158 LMARALKAGHAFSGALQMAST---DGPEPAADEFRLTFDEINFGVSVQDALMNLATRVPI 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + R+ + + + S +L+ I+ LP
Sbjct: 215 TDLRYFVIAVLIQRESGGNLAELLDKISGLIRARLTLLGKIRVLSAEGRLSA-WILSCLP 273
Query: 309 V---LILVIIGPAILSIIDT 325
L++ ++ P L+++ T
Sbjct: 274 FATALMINLVNPGFLTVLWT 293
>gi|329847257|ref|ZP_08262285.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
gi|328842320|gb|EGF91889.1| bacterial type II secretion system protein F domain protein
[Asticcacaulis biprosthecum C19]
Length = 337
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/318 (15%), Positives = 123/318 (38%), Gaps = 17/318 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + A F +I +V +G G A+ + T+++
Sbjct: 1 MLMTLLIAFLGFVVIASVGFAFIGGGGGGNSGGGAALTKRTQTIGLGTNMRGKRGGKSAA 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDEN---IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + ++L + + +++ AG ++ ++ V+ ++ ++
Sbjct: 61 KSPEERRKQITEQLKEAEKRERKARLTLRSRMLHAGL--TPNVTQFWIITAVLGVVAFVV 118
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + D +L + A+ + + AP + + R +P+A+D+L
Sbjct: 119 PLVLLGKMDFMLRL-----LVALGAGFALSYGAPRWVLGMMATGRLKKFTEEFPNAMDIL 173
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG+ + L+ +++ PL E L + + + + A E R
Sbjct: 174 VRGIKSGLPVHDGLKIISK---ESPAPLGPEFLRLVENVGVGMSVEGALEKMSERIPSPE 230
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R T + + G ++ ++L L + R+ ++M + KA S + II LP
Sbjct: 231 LRFFTIVIAIQAKTGGNLAEALNNLSTVLRARKMMREKIKALSSEAIASAS-IIGVLPPG 289
Query: 311 ILVIIG---PAILSIIDT 325
+ V+I P + + T
Sbjct: 290 VGVMISLTRPEYIGGMFT 307
>gi|110679392|ref|YP_682399.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
gi|109455508|gb|ABG31713.1| type II secretion system protein, putative [Roseobacter
denitrificans OCh 114]
Length = 320
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/320 (16%), Positives = 120/320 (37%), Gaps = 29/320 (9%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E + + + L+ + + + G S+ + +D
Sbjct: 1 MSPEPIIYGLIFIGVLVLVEGLYLVTFGKS------ISLNSRVNRRLEMLDKGTGRDEVL 54
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+LR + +++ + + L G +++ + +LV+ + L
Sbjct: 55 EKLRKEMQQHMKS-----------KSIPLYSLL---GEKAQKAAIAFTPSQLVMIMGMLA 100
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ P ++ + I +G V F W+S+ KR + I+ PDA++L
Sbjct: 101 VVAFLGLSVGTASSLPVRIMMSIGIGVGAVYF-----WVSSKANKRLAMIEEQLPDAVEL 155
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G A++ V++++ PL+ EM + E ++ + A + R M
Sbjct: 156 MVRSLRVGHPFSSAVQIVSKEVQD---PLASEMGVIADESAYGRDVGDALKEMAERLDMQ 212
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ G ++ + L L R+ + KA + K + + PV
Sbjct: 213 DLRFLAVAVNIQQTSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGK-FLSAFPV 271
Query: 310 LILVIIGPAILSIIDTMKDH 329
+ L++I + D ++DH
Sbjct: 272 VALIVINVGDPNYYDAVRDH 291
>gi|221067369|ref|ZP_03543474.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220712392|gb|EED67760.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 329
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 55/270 (20%), Positives = 114/270 (42%), Gaps = 4/270 (1%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+Q S + RLR + + KL + +L D + ++ + R+ +++
Sbjct: 33 KQYKSPEAKRLERRLRALSAADDHSSPTKLVKERVLSDMPRMQRMLQSMPRAHQLDRVIV 92
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
L + L+LGI +F L F L + V+L G V C P +++ +R
Sbjct: 93 QSGLEWTVSGLLLGIGILFFLGALAASMFHLPMELVLLAGAVLGCLPWLYLQRKRNQRLG 152
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
++R P+ALDL+ + +G + L+ E++ S P++ E L E+++ + Q
Sbjct: 153 LLERQIPEALDLIARALRAGHAFSAGLQMAGEEL---SEPIAGEFRLVHDEINYGTSLQQ 209
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A N R + +R A++ G ++ + L L R + A+ + S +
Sbjct: 210 ALNNLGERIPITDLRYFIVAVLIQRESGGNLTEMLSNLSRLIRERLKLHAKIRVLSSEGR 269
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ I+ +P + ++ + T+
Sbjct: 270 MSA-WILGLMPFALAALLNFVNPEFMSTLW 298
>gi|168702878|ref|ZP_02735155.1| secretion system protein TadB [Gemmata obscuriglobus UQM 2246]
Length = 319
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/314 (12%), Positives = 102/314 (32%), Gaps = 34/314 (10%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGS--GELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L + + + +++ + + + G R+ + L++
Sbjct: 4 LLLPVLIGGLVIAMVALLYLALRANPDGAAADRLDQLVGRSSRKDSSADMLLKQALQEVD 63
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+T K + F N+ A + S + G
Sbjct: 64 KKTLMDKLMPEFF------------NLTKTFEQADCNIKPS---------------ALFG 96
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I + + + + + F P VW+ R + PDA++L+
Sbjct: 97 ISLGLSVLGAAMSIWLVNLYVLPIGALTCFALPWVWLHMKRSSRLKAFAAQLPDAMELVA 156
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G S+ + VAE++ P+ +E E + + A + +R +
Sbjct: 157 RALRAGHSLAAGMHVVAEEM---PAPICKEFGRVYEEQNLGIPLEEALKGMCDRVPNLDL 213
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ ++ + G + + L + R + + KA + +L+ ++I L
Sbjct: 214 KFFVTSVAIQRQTGGDLAEILDRIGHIIRERFKILGQVKALTAEGRLSGVVLIALPIGLF 273
Query: 312 LVIIG--PAILSII 323
++++ P + ++
Sbjct: 274 VMMLWTKPDYVEML 287
>gi|167894486|ref|ZP_02481888.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 269
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 2 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 61
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P +++ R+
Sbjct: 62 SARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKIYVRRRAAARRQ 115
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 116 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 175
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 176 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 235
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 236 MTGVMILTLLPALFIVTAGPGMLAVTHAL 264
>gi|37676258|ref|NP_936654.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
gi|37200799|dbj|BAC96624.1| Flp pilus assembly protein TadC [Vibrio vulnificus YJ016]
Length = 292
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 121/290 (41%), Gaps = 27/290 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I A+ I ++ + E ++ + + +K+
Sbjct: 9 IFIFVALIISVVVAVFALKVWDETRAEISVRKIIGSTKEQQKRD---------------- 52
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+F K+ + + KL AAG S++ + +++ P+ IL +++
Sbjct: 53 --DLFLSFFKRFSFNK----DETKKKLVAAGVYSDFIAQTYYLFKII-PLFLTILISVYL 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ L L + ++I VG P ++IS+ I P LDL+ +CV
Sbjct: 106 MSIEVLDTNELILTIALGMVIFVVG---PDMYISSRANSITRHISSRLPFLLDLMNVCVH 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G++I+ L +A ++ L+ + +T+ A E FY ++
Sbjct: 163 TGMTIEATLEYLANELQTVDKYLAFTVNVTVQRSKV-IGINKALEEFYEMVPSSEAQSFV 221
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
LIQS ++G+S+G L L ++ R +ME E+K LG K+++PMI+F
Sbjct: 222 MTLIQSLQFGSSVGQVLGTLATDIRQINMMELEEKIGKLGAKMSIPMIVF 271
>gi|322434107|ref|YP_004216319.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321161834|gb|ADW67539.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 320
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/313 (15%), Positives = 110/313 (35%), Gaps = 28/313 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ +T + L + +V+ L + EK ++ +++ + + + +
Sbjct: 1 MLVTIFIGALILSFGLVLFLLRPDDAEKALERKLRVISSDARKEQAETEGYALTVKKAEG 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ V++ + ++ + +G + ++GI +
Sbjct: 61 ILFEIGEMVERYHFSQ-----DLQQLILHSG---------------TETTVGSVIGISAV 100
Query: 136 FGYDKLLEYPFQLRVGAV-ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L L + V + VG A + + R + A PDA+DL+ +
Sbjct: 101 LAVAAALLAHIFLGIYIVDAVAFVVGGSARWMQLKWKKSSRLGKFEEALPDAIDLMARAL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G ++ A+ VAE + PL+ E + + F + A +R +
Sbjct: 161 RAGHAMSSAIEVVAE---ESAEPLAGEFAIVFQQQKFGLQFRDALLQLGDRVPSKDLSFL 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A++ G + D L R ++ E + + +LT I+ LPV++L +
Sbjct: 218 ITAILVQKETGGDLTDVLDRTTRVIRERIRIQGEIRTYTAQGRLTG-WILSALPVVMLCL 276
Query: 315 IG---PAILSIID 324
I P I+
Sbjct: 277 INVATPGYSHILF 289
>gi|219850072|ref|YP_002464505.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
gi|219544331|gb|ACL26069.1| type II secretion system protein [Chloroflexus aggregans DSM 9485]
Length = 332
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 78/242 (32%), Gaps = 16/242 (6%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+ +I N+L A + ++ ++L ++ + G L
Sbjct: 72 VAKSKQGSSIKNELSRAAL--KLTVAEFFGLKLGAALLGGVFGAFLGRASPYAALALGLL 129
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
P +++ +R + D + ++ + G S Q L VA
Sbjct: 130 CAIIFA-------FLPDIYVKVRAAQRVKAFNNQLGDVITMMANALRGGYSFLQTLDMVA 182
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ P S E + E+ + + A +N R D + A+ G ++
Sbjct: 183 REAPD---PASTEFRRVVQEVGLGRSTEEALQNLLRRVPSDDLDLLVTAVSIQMEVGGNL 239
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILVIIGPAILSIIDT 325
L + R ++ E + +++ II LP + ++ P ++ + T
Sbjct: 240 AQVLDTIGHTIRERVRIKGEISTLTAQGRISS-WIITGLPIGLAAFITVVNPDYMAPLFT 298
Query: 326 MK 327
Sbjct: 299 FG 300
>gi|188581664|ref|YP_001925109.1| type II secretion system protein [Methylobacterium populi BJ001]
gi|179345162|gb|ACB80574.1| type II secretion system protein [Methylobacterium populi BJ001]
Length = 323
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 109/297 (36%), Gaps = 28/297 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A AV+ +L Y ++P L ++ + + + ++ + +
Sbjct: 8 LAAGLVAVASGALAYVFLMPLLSGERRAEQRRKALGQSRAVLAERGAAANRREQ------ 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ +K+L K + ++ AG ++S +V V + + +
Sbjct: 62 -----VAKSLKELEAKKDKTKVTLELRIARAGL--DWSRRKYQIVSAVTAVGVALAAFLI 114
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ A++ + GF P+ + ++R ++ P+A+D+++ +
Sbjct: 115 SHNV-----------IVALLGLFAGGFGLPAWMLKWRQKRRVAAFVEELPNAMDVVVRGL 163
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SGI + LR ++ PL E + + + A Y R + V
Sbjct: 164 RSGIPLGDCLRMISR---EAKEPLRSEFRVAMEAQAMGLPMSDAILRMYERVPVTEVNFF 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + G ++ ++L L R + M + +A S+ K + II LP LI
Sbjct: 221 SIVIGIQQKAGGNLSEALSNLSRVLRERKKMAGKIQAMSMEAKASAG-IIGALPFLI 276
>gi|167911130|ref|ZP_02498221.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 267
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 6/267 (2%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + + L +V + L G+ ++ I L
Sbjct: 2 EAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSA 61
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R+ I + + + V L GF P ++ R+ S+
Sbjct: 62 RIACAIALPAAVALVGGEPVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQSV 115
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ +
Sbjct: 116 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 175
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + +R + LIQ D++G ++ + L+ R R ++ L K+T
Sbjct: 176 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 235
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
MI+ LP L +V GP +L++ +
Sbjct: 236 GVMILTLLPALFIVTAGPGMLAVTHAL 262
>gi|56477521|ref|YP_159110.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
gi|56313564|emb|CAI08209.1| putative Flp pilus assembly protein [Aromatoleum aromaticum EbN1]
Length = 324
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 49/318 (15%), Positives = 116/318 (36%), Gaps = 29/318 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D L A+ T +++ + + S + +R R ++ S +
Sbjct: 1 MDILTLLFALATFITVVLFLEGAYLWWASSHSAD-------AKRLNRRLDEVASGVGSAR 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ L + + +L L A+ I + + R + +L + + +
Sbjct: 54 PASLYKEQNAAGSAAGDRL-LAAVPHLHGINRLIVQS--RLQLTLAQFAGWTVALAALGF 110
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L ++ + + V P++++ + + P+ALD
Sbjct: 111 TLPLLL------------NRPLFLGLGFAVVLGMLPTLYVMRARNQHMQRFELQLPEALD 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G + A++ VAE++ P+ E + E+++ +Q A N +RT
Sbjct: 159 LMGRALRAGHAFPTAIKMVAEEMKD---PIGGEFRILFDEMNYGVPQQTAMLNLASRTDS 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A++ G ++ + L + R+ + E + S KL+ I+ LP
Sbjct: 216 TDLSYFVIAVLIQRDSGGNLAELLDNISKIVRARLKLYGEIRTLSAEGKLSA-WILGCLP 274
Query: 309 V---LILVIIGPAILSII 323
++ I+ P + ++
Sbjct: 275 FATAALINIVNPGFMKVL 292
>gi|311107627|ref|YP_003980480.1| type II secretion system protein F domain-containing protein 3
[Achromobacter xylosoxidans A8]
gi|310762316|gb|ADP17765.1| bacterial type II secretion system protein F domain protein 3
[Achromobacter xylosoxidans A8]
Length = 331
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 114/319 (35%), Gaps = 3/319 (0%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ A + L + + + RE +
Sbjct: 10 TTVLAMALMLVAAGLVVLGLGMARRLRSQSRSRQVVDQALAAREGGAASAPLRGEGGQGR 69
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN-ILLVVRLVVPIIFL 128
TR + + + + L L+ + AG+ + + +++R+ + I+
Sbjct: 70 LAAATRAADTFGKRLSEGRLADALLASEDRKLVDMAGYANPGTARSRFVLIRVGLAILLP 129
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ K L + A L +G+ P + + +R+ P +D
Sbjct: 130 VAA--VTLDLSKHLPDMPMGALVAGFLGFAIGYMLPKWIVQRRLARRRRQAADELPLLID 187
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + G+SIDQ+L+ + ++ G L+ E+ L R+ +
Sbjct: 188 LLRLLQGVGLSIDQSLQVLVKEFGQVLPVLAFELRLASELYVRGRTREQSLARLAAGFDN 247
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D + + + Q D++G ++ + L R +R +E ++K K+T MI+ LP
Sbjct: 248 DDLSAICRLIAQVDQHGGAVQEPLNRFGERLRDKRRLELKEKVGKTTVKMTGVMIVTLLP 307
Query: 309 VLILVIIGPAILSIIDTMK 327
L++V G ++++ +
Sbjct: 308 ALLIVTGGAGFIAVLRGLS 326
>gi|116694144|ref|YP_728355.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
gi|113528643|emb|CAJ94990.1| flp pilus assembly protein TadC [Ralstonia eutropha H16]
Length = 345
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 6/269 (2%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
Q + ++L R + + L +V L G+ S + V
Sbjct: 77 QGRGGAATAIGAQLGARVGERINAHWLDSRLGRAVVTPEDQQLLEQCGWYGPQSRMLFGV 136
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+RL +P + ++W G V + + AP + R
Sbjct: 137 LRLGLPSALALAAMLWHVGAGAF------AIVAWGFGTFALAYLAPKWHLRRRAAARLRM 190
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ P +D+L + G+SIDQ+L+ + + G L E+ + + +R+
Sbjct: 191 VDDELPVLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQT 250
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ +++ L Q D++G ++ + LR + R + + L K+
Sbjct: 251 LLRIGRLFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRLKDEIGRLTVKM 310
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
T M++ LPVL+++ GP L +I +
Sbjct: 311 TAVMVVSLLPVLLILTAGPGFLGVIRMLA 339
>gi|289675688|ref|ZP_06496578.1| type II secretion system protein [Pseudomonas syringae pv. syringae
FF5]
Length = 252
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 104/243 (42%), Gaps = 4/243 (1%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++
Sbjct: 13 TRIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVVAILGQMLFFKGIQQ 72
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
PF A I G+ P ++ + ++RQ + + LL I ESG++++QAL
Sbjct: 73 PF----IAPIFALGAGYLLPKRILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQAL 128
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R ++ + LSEE+ + + + +D + + L Q
Sbjct: 129 RVLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQ 188
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 189 GGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAISS 248
Query: 325 TMK 327
+
Sbjct: 249 ALG 251
>gi|167738780|ref|ZP_02411554.1| type II secretion system protein [Burkholderia pseudomallei 14]
Length = 271
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 98/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 4 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 63
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P ++ R+
Sbjct: 64 SARIACAIALPAAVALVGGEPVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQ 117
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 118 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 177
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 178 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 237
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 238 MTGVMILTLLPALFIVTAGPGMLAVTHAL 266
>gi|66047622|ref|YP_237463.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
gi|63258329|gb|AAY39425.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
Length = 294
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 112/275 (40%), Gaps = 5/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R + ++ +R LR ++ ++I +D L G+R
Sbjct: 23 RQRSNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQILLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ +++ I+ + K ++ P + A I G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMVIVILGQLLFFKGIQQP----LIAPIFALGAGYLLPKRILAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 RRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLMRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFMAISRALG 293
>gi|186473167|ref|YP_001860509.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184195499|gb|ACC73463.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 292
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/297 (19%), Positives = 110/297 (37%), Gaps = 9/297 (3%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
+ V + L + A R + D+ LR
Sbjct: 1 MLTVSLAIAVGCVLVCMLALYAARRLMRNVPNEDRTWLDALPPLLRFIWPTVNFAAHYSA 60
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+LR + L + +V ++ + +
Sbjct: 61 GWFGERFIARTDAQLRLTSLNFLMNARQFLALSMVSSFGAALIALTVMLASG-------L 113
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
A+ VG+ P +W+ ++ ++ +++ R P LD L + VE+G++++ A+++
Sbjct: 114 FSAAALCFAMCVGYFYPRIWMRDVRRRYVATVLRQLPIYLDFLTLAVEAGLNVNGAIQKA 173
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
E PL E + +L R A F R Q+ V N + + Q++R G+
Sbjct: 174 VEKGPD--GPLRREFEHVLRDLKSGLKRGDALRRFDERQQIGEVSNLVRTIAQAERMGSG 231
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ +LR + R+ER AEK+A KL P+++F PV +V+ P + +
Sbjct: 232 LAKTLRFQSEQRRAERFQRAEKQAMEAPVKLLFPLLVFIFPVTFIVLGFPIAMKFMQ 288
>gi|323493929|ref|ZP_08099046.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
20546]
gi|323311870|gb|EGA65017.1| putative Flp pilus assembly protein TadC [Vibrio brasiliensis LMG
20546]
Length = 288
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 59/279 (21%), Positives = 130/279 (46%), Gaps = 5/279 (1%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ S+ V +L+ + TR+ + + VK + E KL A
Sbjct: 14 LFSLLVAAGVLKAWDNARANIATRKIIGSTREERKRVDLVKTALSQFSFNKEETRKKLVA 73
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AGF S+Y ++ +++++ + L L F + + + +GA+ L P
Sbjct: 74 AGFYSDYLADVYYLMKIIPFTLCLALIGFDYFKGETEIAFSLLYLLGALGLFIIG----P 129
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++++ + I P LDL+ +CV +G++I+ +L +++++ L+ + +
Sbjct: 130 DAFVASRGKANTKHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRV 189
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ + A E FY+ ++ ++QS ++G+SIG L L ++ R +
Sbjct: 190 TVDRSRL-VGLEKALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNM 248
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
M+ E++ +G K+++P+I F + ++++I P IL ++
Sbjct: 249 MDLEERIGKMGAKMSIPLIAFIMVPIVVLIAAPGILRML 287
>gi|103486614|ref|YP_616175.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98976691|gb|ABF52842.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 310
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 105/303 (34%), Gaps = 26/303 (8%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
F+++ ++ +R+ V + + + + + S +
Sbjct: 2 AFAVLAILLQGPSAGKAKSRRLAMVKDRHAASTEAVVAAQMRKTIQS---------VGRR 52
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ E + ++R G ++L + + + ++ +I +
Sbjct: 53 GNSSLTSLLPRREELEKRIRRTG--KSWTLTQYMFASMGLFVVATGAMLIVRAPFP---- 106
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
A ++ + P + + ++KR + +PDA+DLL+ + SG+ + +
Sbjct: 107 -------MAALVGLLISLGLPYLVVGMAIKKRVAQFNARFPDAIDLLVRGLRSGLPVTET 159
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ V++++ G P+ EE + + + A + + +
Sbjct: 160 FQVVSQELPG---PVGEEFKGVVERIRIGNTMEAALQETAEMLGTPEFQFFCITIQIQRE 216
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G ++ ++L L R M+ + +A S K + I+ LP + ++ S +
Sbjct: 217 TGGNLAETLANLSDVLRKRAQMKLKIRAMSSEAKASA-YIVGALPFFVFGVVWTVNPSYL 275
Query: 324 DTM 326
Sbjct: 276 AGF 278
>gi|260778157|ref|ZP_05887050.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260606170|gb|EEX32455.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 284
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 55/264 (20%), Positives = 120/264 (45%), Gaps = 6/264 (2%)
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
++ R + S S + + +L GF ++ +++R V
Sbjct: 24 ARQQDVIHRRLKQVSISTLHTRSLGEKWRWKSNPARQKQLALIGFSQNHAETQFVLIRFV 83
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L + + V I + V + + I +
Sbjct: 84 LMLCGAGLWHFSRSLGWSAADIAQDIAVAIACGIAV------DRLLEWRVNQIRQEISKV 137
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDALDL+++CV SG++++ R V E++ S L+ E LT E+S L + Q A +N
Sbjct: 138 APDALDLMVVCVASGLTLENTFRVVGEEMTSVSPALAREWALTATEMSVLDSPQQALQNL 197
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R ++ + N + Q+ ++GT + +L ++ S++R +L++ E+ + K++ P+
Sbjct: 198 DQRLELPDINNMVVTMSQALQFGTPLSQALSLIASDSRQYQLLDLEEWVGKIPAKMSFPL 257
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
++F + ++++I+ P +LS+ +T+
Sbjct: 258 VVFIMLPVVVMIVAPVVLSLFNTL 281
>gi|167919153|ref|ZP_02506244.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 274
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 53/273 (19%), Positives = 101/273 (36%), Gaps = 9/273 (3%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSL 113
+ A F +L L +V + L G+ ++
Sbjct: 3 ARAGMPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTR 62
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
I L R+ I + + + V L GF P +++
Sbjct: 63 GIFLSARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKIYVRRRAA 116
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ S+ P +D+L + G+S+DQ+++ V D G LS E+ + +
Sbjct: 117 ARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGR 176
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R+ + + + +R + LIQ D++G ++ + L+ R R ++
Sbjct: 177 TREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGR 236
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L K+T MI+ LP L +V GP +L++ +
Sbjct: 237 LTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 269
>gi|167824379|ref|ZP_02455850.1| type II secretion system protein [Burkholderia pseudomallei 9]
Length = 266
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 6/267 (2%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + + L +V + L G+ ++ I L
Sbjct: 1 EAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSA 60
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R+ I + + + V L GF P ++ R+ S+
Sbjct: 61 RIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQSV 114
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ +
Sbjct: 115 VDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSL 174
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + +R + LIQ D++G ++ + L+ R R ++ L K+T
Sbjct: 175 QRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMT 234
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
MI+ LP L +V GP +L++ +
Sbjct: 235 GVMILTLLPALFIVTAGPGMLAVTHAL 261
>gi|73542333|ref|YP_296853.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72119746|gb|AAZ62009.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 325
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 117/314 (37%), Gaps = 30/314 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPS-LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
A I V++ + + I G KR+++ LR S L
Sbjct: 6 YAFGILLFVAVVLCVEGIFIWWNSTHGAAAKRIEA------RLRALSAGGQVGAEQLSIL 59
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ R + L ++ ++ L +G S +S+ LL V + + L
Sbjct: 60 KKRLLAGSPRMQQW--LMSLPRVGSLDRWLEQSG--STWSVAQLLGYCATVALCTIALIP 115
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +++ V P + I L KR ++ PDA+D++
Sbjct: 116 VV------------PVPAPLMLVGAAVAAVLPVLHIMRLRAKRIQQMESQLPDAVDMIAR 163
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G S AL V +++ P++ E T E+++ A N R + +R
Sbjct: 164 ALRAGHSFSGALGMVGQEMK---APIAPEFRTTFEEINYGIALDEAMTNLAIRVPVGDLR 220
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL-- 310
A++ G ++ + L + + R + A+ + S +++ ++ LP
Sbjct: 221 YFVIAVLIQRESGGNLAEILDTIGNMVRERLKLFAKIRVLSAEGRMSA-WVLGLLPFATG 279
Query: 311 -ILVIIGPAILSII 323
+++++ P + ++
Sbjct: 280 GMILVVNPDFMKVL 293
>gi|238563945|ref|ZP_00437984.2| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|238519622|gb|EEP83092.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
Length = 268
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 98/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 1 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 60
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P ++ R+
Sbjct: 61 SARIACAIALPAAVALVGGEPVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQ 114
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 115 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 174
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 175 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 234
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 235 MTGVMILTLLPALFIVTAGPGMLAVTHAL 263
>gi|158317568|ref|YP_001510076.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158112973|gb|ABW15170.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 338
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/267 (14%), Positives = 92/267 (34%), Gaps = 6/267 (2%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
+ + + + + + +L AG R+ +
Sbjct: 71 GRPIMAGGTAGRFGLGAVEALVRPFVEDAARRLDGFLGGRVALNRRLVQAGGRTP--VEE 128
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
V +++ + +LG + + P + + V+ G A W++ +++
Sbjct: 129 FRVQQVICAVAGALLGALVLAMRTLFGVGPPALVGIALVVAGAAGGILARDWWLTRAIRE 188
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + +P +LL + V +G + A+ + L E+ L +A+ +
Sbjct: 189 REDRMLMEFPTVAELLALAVTAG---ESAIGALERVSRLTHGELGTELRLALADAHAGAS 245
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A E RT + + + + GT + D LR + R + +
Sbjct: 246 LVQALEGIATRTSLPPLARFVDGMAVAIERGTPLADVLRAQAVDVREAGKRQLLEAGGRK 305
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILS 321
+ +P++ LP ++ PA++S
Sbjct: 306 EIAMMIPVVFLILPTTVIFAFYPALVS 332
>gi|91788418|ref|YP_549370.1| type II secretion system protein [Polaromonas sp. JS666]
gi|91697643|gb|ABE44472.1| type II secretion system protein [Polaromonas sp. JS666]
Length = 325
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 52/320 (16%), Positives = 115/320 (35%), Gaps = 28/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D A +++ L+ + + + K ER R + +++ A
Sbjct: 1 MDYLYYLFATLIFIAVVLLVEGLYLSWNST-------KGPEAERVARRLRVMSAGGHGDA 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S T++ V + L + + L+ +G +S+ L + L+ ++
Sbjct: 54 QSISITKERLLSETPVMQRILLGVPRVGTLDRLLQQSGL--SWSVGEFLGMALIAFLVVF 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G L + ++++ +KR I+ PDALD
Sbjct: 112 FAGSYLAVPLLLRLALAGAAALLPF------------LYVTRAKRKRLDRIEHQLPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G + AL+ V +++ PL+ E + E++F A N R
Sbjct: 160 LMGRALRAGHAFPTALKMVGDEMND---PLAGEFRIAFDEVNFGIAMPDALMNMATRVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + + R + + + S K++ ++ LP
Sbjct: 217 TDLRYFVIAVLIQRETGGNLSELLTSISAIIRDRIKLMGQVRVLSAEGKMSA-WVLSLLP 275
Query: 309 V---LILVIIGPAILSIIDT 325
++ + P L ++ T
Sbjct: 276 FGAAFMIQLTNPKFLEVLYT 295
>gi|167845911|ref|ZP_02471419.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 270
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 98/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 3 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 62
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P ++ R+
Sbjct: 63 SARIACAIALPAAVALVGGEPVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQ 116
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 117 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 176
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 177 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 236
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 237 MTGVMILTLLPALFIVTAGPGMLAVTHAL 265
>gi|256832096|ref|YP_003160823.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
gi|256685627|gb|ACV08520.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
Length = 311
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 51/316 (16%), Positives = 103/316 (32%), Gaps = 7/316 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ V L + + L +R+ E + S
Sbjct: 1 MTPPLILGGTLGFVLGLGLWAIMAALTSRRVTLMERITPYLASHEAPESRLGPSETTSPF 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + R N + +L + +L A R +L+ + ++ L
Sbjct: 61 A--VFARLIAPWTNTLVRLVTTVSSPNAQTEKRLAKA--RRNITLHQYRLHQVAAGTAGL 116
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
LGI+ + VI G A +++ +++R I +P +
Sbjct: 117 TLGILVSLYLAIYRNAHIVALIILVIAAAIAGVAACEQHLTHTIRRRSERIILEFPTIAE 176
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + V +G AL RV+ + LS E+ + + E+ A F +R +
Sbjct: 177 LLALAVAAGEPPATALDRVSR---TSNGELSHELAIVMNEVRSGEPLTDALTRFGDRVDL 233
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + + GT + LR E R + + VP++ LP
Sbjct: 234 PLITRFAEGVTVAIERGTPLAAVLRAQAQEARDAGHRTLMEVGGQREILMMVPVVFIILP 293
Query: 309 VLILVIIGPAILSIID 324
+ I+ + P+ ++
Sbjct: 294 ISIVFAVFPSFTALSF 309
>gi|261251276|ref|ZP_05943850.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
gi|260938149|gb|EEX94137.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Vibrio orientalis CIP 102891]
Length = 288
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 60/279 (21%), Positives = 129/279 (46%), Gaps = 5/279 (1%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ S+ V +L+ + TR+ + + VK + E KL A
Sbjct: 14 LFSLLVAGGVLKAWDNARANIATRKIIGSTREERKRIDLVKTALSQFSFNKEETRKKLVA 73
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AGF S+Y ++ +++++ + L L F + + + +GA+ L P
Sbjct: 74 AGFYSDYLADVYYLMKIIPFTLCLALIGFDYFKGETEVAFSLLYLLGALGLFIIG----P 129
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+I++ I P LDL+ +CV +G++I+ +L +++++ L+ + +
Sbjct: 130 DAFIASRGNANTKHISSRLPFLLDLMNVCVHTGMTIESSLDYLSKELVTVDRNLAYVVRV 189
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
T+ + A E FY+ ++ ++QS ++G+SIG L L ++ R +
Sbjct: 190 TVDRSRL-VGLEKALEEFYDLVPTSESQSFVMTMVQSLQFGSSIGPVLATLATDIRELNM 248
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
M+ E++ +G K+++P+I F + ++++I P IL ++
Sbjct: 249 MDLEERIGKMGAKMSIPLIAFIMVPIVVLIAAPGILRML 287
>gi|167816004|ref|ZP_02447684.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 272
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 53/273 (19%), Positives = 100/273 (36%), Gaps = 9/273 (3%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSL 113
+ A F +L L +V + L G+ ++
Sbjct: 1 ARAGMPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTR 60
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
I L R+ I + + + V L GF P ++
Sbjct: 61 GIFLSARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKTYVRRRAA 114
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ S+ P +D+L + G+S+DQ+++ V D G LS E+ + +
Sbjct: 115 ARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGR 174
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R+ + + + +R + LIQ D++G ++ + L+ R R ++
Sbjct: 175 TREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGR 234
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L K+T MI+ LP L +V GP +L++ +
Sbjct: 235 LTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 267
>gi|152994351|ref|YP_001339186.1| type II secretion system protein [Marinomonas sp. MWYL1]
gi|150835275|gb|ABR69251.1| type II secretion system protein [Marinomonas sp. MWYL1]
Length = 329
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/306 (15%), Positives = 101/306 (33%), Gaps = 21/306 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+++ +SI + + ++ R +Q K
Sbjct: 1 MSDVINLLSLLVFLSIGCFFLFLRSIN-------------GKRKQEQRSKQYLQSLKQQV 47
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S L + +++ + I L F + SL ++
Sbjct: 48 LDESSLSESLELDSVSRQVEVFLWSKTPIIGAWLER--FWMDLSLLGWQEKCRTRAMMLA 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ F K PF L + ++ + N + K K+ P A+D
Sbjct: 106 GPCFLLGFTLAKDSLSPFLLSLVLSVVFFFCAVLV---LYRNAMAKHLKEFKQNLPQAID 162
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +G+ + A VAE++ G PL++E L L + A ++ R +
Sbjct: 163 SIVRIARAGVPVSNAFNLVAENLPG---PLAKEFSLVDKWLRLGVPLRQAMQDSAKRVPL 219
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R LI + G + D+L L R + + + +A + + + ++ P
Sbjct: 220 NEYRFFVVILIINQEAGGRLSDTLERLAHTLRERQELALKIRAKTSEVRASAVIVASLAP 279
Query: 309 VLILVI 314
+ + +
Sbjct: 280 LSLAYM 285
>gi|167582055|ref|ZP_02374929.1| hypothetical protein BthaT_28187 [Burkholderia thailandensis TXDOH]
Length = 278
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 6/262 (2%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + L +V E L G+ ++ I L R+
Sbjct: 18 ARRSRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSARIACS 77
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I ++ + + V L GF P +++ R+ S+ P
Sbjct: 78 IALPAAVALFGSATVRTHLSAW------VALSVIAGFMLPKIYVRRRAAARRQSVVDEMP 131
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 132 LLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLAT 191
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+
Sbjct: 192 SFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMIL 251
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
LP L +V GP +L++ +
Sbjct: 252 TLLPALFIVTAGPGMLAVTHAL 273
>gi|238789152|ref|ZP_04632940.1| Type II secretion system protein [Yersinia frederiksenii ATCC
33641]
gi|238722684|gb|EEQ14336.1| Type II secretion system protein [Yersinia frederiksenii ATCC
33641]
Length = 264
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 1/204 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
II I+ ++E + ++ P V I+ ++ +R S+ ++ P
Sbjct: 61 IILTSFIIVIPLLLTNIIETNIDTFIIIGLITLMTTLYLPKVLINKVIIRRTESVLKSLP 120
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+ CV+SG++ID +L A+ + LS M+ I + A + ++
Sbjct: 121 FFIDITAACVQSGMTIDNSLSYAAKKFELINHDLSLIMIRMIKRAEIN-GLESAIKELHH 179
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ ++ AL S +G+S+ D L L + R +L+ E++ + L KLT P+ +
Sbjct: 180 SSNALEIKMFCSALQYSISFGSSVYDQLINLSQDMREMQLLVTEERISKLSAKLTFPLFL 239
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
F L ++++I P++L I+ ++
Sbjct: 240 FILIPFVVLVISPSVLEILAYVQK 263
>gi|261252091|ref|ZP_05944664.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260935482|gb|EEX91471.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 322
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/319 (17%), Positives = 126/319 (39%), Gaps = 29/319 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
I ++ + A+++P+ GS K + R ++ S + A
Sbjct: 1 MQQDATLFFILLFFAVVFISQALILPAAGSKAKHKELSE--------RLKESQSKLDEEA 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ KSL + ++ L I ++ + +G+ + +L+ L
Sbjct: 53 LSLLQEHYLKSLTPWDRR--LVKIEAFSSLKKLIELSGYDWSLTQTLLVTSSLS------ 104
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ F L+ PF + + A++ + + W+ + R ++ + P+ALD
Sbjct: 105 ----LCGFLTVLLIGQPFYIGLAAIVGVWVCLYF----WLGKKISDRLAAFEEQLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V ++ P+ E L++ + ++A RT
Sbjct: 157 IMRRMLQAGQPVTQAFNEVGLEM---PAPIGVEFKNMFNLLNYGYDMRMAIMQMAERTPT 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--F 306
+ + A+I G ++ ++L + RS ++ + K S +L+ +++ F
Sbjct: 214 VSMLAFSSAVILQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSAESRLSAWILVLSPF 273
Query: 307 LPVLILVIIGPAILSIIDT 325
+ L L +I P + + T
Sbjct: 274 VLFLFLSVINPGYVEPLYT 292
>gi|167719782|ref|ZP_02403018.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 273
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/273 (19%), Positives = 100/273 (36%), Gaps = 9/273 (3%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSL 113
+ A F +L L +V + L G+ ++
Sbjct: 2 ARAGMPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTR 61
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
I L R+ I + + + V L GF P ++
Sbjct: 62 GIFLSARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKTYVRRRAA 115
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ S+ P +D+L + G+S+DQ+++ V D G LS E+ + +
Sbjct: 116 ARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGR 175
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R+ + + + +R + LIQ D++G ++ + L+ R R ++
Sbjct: 176 TREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGR 235
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L K+T MI+ LP L +V GP +L++ +
Sbjct: 236 LTVKMTGVMILTLLPALFIVTAGPGMLAVTHAL 268
>gi|113866737|ref|YP_725226.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113525513|emb|CAJ91858.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 325
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/319 (15%), Positives = 113/319 (35%), Gaps = 30/319 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSL-GSGELEKRMKSVAVEREILRKQQITSLQKDS 67
A I V++ + + + G KR+++ LR
Sbjct: 1 MSTIFYAFGILLFVAVVLCVEGIYLWWSNAHGPAAKRIEA------RLRALSAGGHVSAE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R K L ++ + L +G S +S+ LL +V +
Sbjct: 55 QLSILKKRMLAGSPRLQKW--LMSVPRVGALDRWLEQSG--STWSVAQLLGYCAMVALCT 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ L + + V V+ + P + + KR ++ DA+
Sbjct: 111 VALIPLL------------PIPVPLVLAGAALAALLPVLHVMRQRAKRIKRMEAQLADAV 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + +G S AL V +++ P+ E T E+++ A N R
Sbjct: 159 DMISRALRAGHSFSGALGMVGQEMK---APIGPEFRTTFEEINYGVALDEAMTNLAIRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + + R + + + S K++ ++ L
Sbjct: 216 VGDLRYFVIAVLIQRESGGNLAEILDTIGTMVRERLKLFDKIRVLSAEGKMSA-WVLGLL 274
Query: 308 PV---LILVIIGPAILSII 323
P +++++ P + ++
Sbjct: 275 PFGTAGLILVVNPGFMKVL 293
>gi|83718806|ref|YP_443055.1| hypothetical protein BTH_I2538 [Burkholderia thailandensis E264]
gi|83652631|gb|ABC36694.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 373
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/325 (18%), Positives = 121/325 (37%), Gaps = 18/325 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ V + A++I + A + L++R ++ + SAS+
Sbjct: 50 IGVLMLAALAIMQAVLARRTGRTLADALDQRAAALEAAAARATTGAAAASSAASASAPDA 109
Query: 74 TRDSKS------------LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
++ + L +V E L G+ ++ I L R+
Sbjct: 110 APHARRSRFATLLDRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSARI 169
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I ++ + + V L GF P +++ R+ S+
Sbjct: 170 ACSIALPAAVALFGSATVRTHLSAW------VALSVIAGFMLPKIYVRRRAAARRQSVVD 223
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 224 EMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQR 283
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +R + LIQ D++G ++ + L+ R R ++ L K+T
Sbjct: 284 LATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGV 343
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
MI+ LP L +V GP +L++ +
Sbjct: 344 MILTLLPALFIVTAGPGMLAVTHAL 368
>gi|254255260|ref|ZP_04948576.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
gi|124900997|gb|EAY71747.1| Flp pilus assembly protein TadB [Burkholderia dolosa AUO158]
Length = 325
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/320 (16%), Positives = 106/320 (33%), Gaps = 25/320 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
++ I T V++ I R LR +
Sbjct: 1 MNSIFYGFVILTFVAVVLAIEGAYQWWNARHGSAARRIE-----SRLRAMSAGGNVRQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + L+ +G ++++ LLV+ V P+
Sbjct: 56 LSILKKRMLDESKPF--DRLLLRMPRVHALDLMLQQSGL--DWTVPKLLVLSAVWPVC-- 109
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L L + AV+ C P +++ +R ++R PD D
Sbjct: 110 ----------VWLALAFAALPLVAVLPAVLFAACVPMLYVMRCRGRRMRKLQRQLPDVCD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S L V ++ P+ E +T E+++ A +N R
Sbjct: 160 MIARALRSGHSFTSTLGMVGDEFPD---PMGGEFRVTFDEVNYGVPLNDALKNLATRVPA 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + + R + + + S +L+ I+ LP
Sbjct: 217 QDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIGPAILSIIDTMKD 328
++ + +
Sbjct: 276 FGTGAVMALVNREFLSVLWQ 295
>gi|283779213|ref|YP_003369968.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437666|gb|ADB16108.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 321
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/301 (15%), Positives = 115/301 (38%), Gaps = 26/301 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L + I + + + L+ V L + + +V +L + + A + +
Sbjct: 4 LLILIASFIGVACLVGGVASMFLRTEQA----TAVEDRLAVLTGAAQPNTKGKQADTNVL 59
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + +++ NI L+ A ++ S + +V ++ II +++ +
Sbjct: 60 QTPLDDMPSVIEEY----FSKYFNIRAFLQQA--DTQLSPSRFFLVSVIAAIIGMVIVAV 113
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + L +G P +W +R + R P+AL+L+
Sbjct: 114 CR------------VPIYLAPLGAIMG-VTPWIWFLMKRNRRLAHFARQLPEALELISRA 160
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S+ + VA+++GG P++ E + + A + R +R
Sbjct: 161 LRAGHSLASGFKLVADELGG---PIAVEFERCYEAQNLGVPLEEAIDEMTVRVPNLDLRF 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+I + G + + L + R + + +A + +L+ +++ PVL +V
Sbjct: 218 FATAVILQRQTGGDLAEILDKIGHLVRERYKIWGQIQALTGEGRLSGIVLLALPPVLFVV 277
Query: 314 I 314
+
Sbjct: 278 M 278
>gi|300704934|ref|YP_003746537.1| tad secretion system, pilus assembly protein [Ralstonia
solanacearum CFBP2957]
gi|299072598|emb|CBJ43948.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum CFBP2957]
Length = 325
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 114/321 (35%), Gaps = 27/321 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPS-LGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D + ++ V+I + + + + KR L+ ++S +
Sbjct: 1 MDTLVIGFVLSVFVAIVLGVSGLYLWWDSSHSQTAKRFSQ------RLKMALLSSARHGG 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R L + + L +G +S L + L +P++
Sbjct: 55 DESILKQRVLAESPEVAA--MLGRLPRIAQLDRILLQSGL--SWSAGRFLALTLGLPVVV 110
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ P A + + PS ++ +R ++ P+A
Sbjct: 111 IV------------GVSPLNPPWMATLALALAAGSLPSFYVMYRRTRRLLRLEAQLPEAT 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S+ AL +++ P+ E+ + ++++ + A +R
Sbjct: 159 DLISRALRAGHSLPSALEMAGDEL---PQPVGPELAIVFGQINYGVSMNDALAGLIDRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D +R A++ G ++ + L + + R + + + S +L I+ L
Sbjct: 216 VDDLRYLVIAILIQRESGGNLAEILDNVGTLIRKRLQLLDKVRVLSAEGRL-GGWILTAL 274
Query: 308 PVLILVIIGPAILSIIDTMKD 328
P + V++ ++ T+
Sbjct: 275 PPAMAVVVYQLNPELMSTLWK 295
>gi|78060307|ref|YP_366882.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
gi|77964857|gb|ABB06238.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
Length = 325
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 102/308 (33%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ I T V++ I R +R +
Sbjct: 1 MNTIFYGFVILTFVAVVLAIEGGYQWWNARHGSAARRIE-----SRIRSMSAGGNVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + ++ +G +
Sbjct: 56 LSILKKRMLDESKPF--DRLLLRLPRVHRLDLVIQQSGLDWTLPK-------------LI 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L +++ L + ++ A+ + + G C P +++ KR ++R PD D
Sbjct: 101 MLSVVFAAFAWVALSFATLPQLAALPVALFAG-CVPMMYVMRCRGKRMRKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S L V ++ P+ E +T E+++ + A N R +
Sbjct: 160 MISRALRSGHSFTSTLGMVGDEFPD---PMGGEFRVTFDEVNYGVSLHDALMNLATRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + + R + + + S +L+ I+ LP
Sbjct: 217 QDLRYFVIAVLIQRETGGNLAELLDCISALIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAAVMA 283
>gi|262275464|ref|ZP_06053274.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Grimontia hollisae CIP 101886]
gi|262220709|gb|EEY72024.1| type II/IV secretion system protein TadC associated with Flp pilus
assembly [Grimontia hollisae CIP 101886]
Length = 288
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 97/229 (42%), Gaps = 6/229 (2%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ I K AG + +++ V + ++ + ++ +
Sbjct: 65 NNEIAEKFIGAGIYNTAMAPYYFLIKYTVGAVGAMIILTLSG-----ESVSLLNKIVMLA 119
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ + P +++ + I R P LD++ +CV++G++I+ ++ + ++
Sbjct: 120 ALVFTVIVLPDLYLEMRRRALARKITRQLPYLLDIMGVCVQTGMTIESSIFYLTTEMAAF 179
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
++ + + A + + L QS ++GTSI ++L +
Sbjct: 180 DKDIAYVLKRLRDRAQT-KGLEKALLELNEHVPAPEMHSFVMTLTQSMQHGTSIYEALSI 238
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + R +L+ E+KA L K++VP+I+F + ++++I P I+ ++
Sbjct: 239 LAKDIREIQLLSLEEKAGKLSSKMSVPLILFIMMPIVILITAPGIMRML 287
>gi|167902893|ref|ZP_02490098.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 264
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/265 (18%), Positives = 98/265 (36%), Gaps = 6/265 (2%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + + L +V + L G+ ++ I L R+
Sbjct: 1 APDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARI 60
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I + + + V L GF P ++ R+ S+
Sbjct: 61 ACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQSVVD 114
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 115 EMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQR 174
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ +R + LIQ D++G ++ + L+ R R ++ L K+T
Sbjct: 175 LATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGV 234
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
MI+ LP L +V GP +L++ +
Sbjct: 235 MILTLLPALFIVTAGPGMLAVTHAL 259
>gi|293604635|ref|ZP_06687037.1| type II secretion system protein F domain protein [Achromobacter
piechaudii ATCC 43553]
gi|292816966|gb|EFF76045.1| type II secretion system protein F domain protein [Achromobacter
piechaudii ATCC 43553]
Length = 236
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 2/231 (0%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ +L A + ++ + + + G L+ P Q + + I
Sbjct: 8 RLRGRLNRAVEVAGLPASVGYAHIVALAASTALFAGGVCVGILVALDVPIQRGLLWSMAI 67
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G V AP + L +KR+ SI+R P D++ +CVE+G+S+ AL++ A+ G
Sbjct: 68 GLVASMAPRASLHGLSEKRRRSIERDLPFVFDMMTLCVEAGLSVQGALQQAAQS--GPKG 125
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
L + + +AE+ R A + +R+ + AL Q++ G S+G LR
Sbjct: 126 ALRDALAQALAEMRAGVTRMDAIKALADRSNSPVAKTWAGALAQAEALGISLGPVLRAQA 185
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ RS+R + AE++A K+ +P+I P +V+ P + ++ +
Sbjct: 186 AQCRSDRHVRAEQQAMQAPVKMLLPLIGCIFPCTFIVLAFPIAVQLLQGIA 236
>gi|90406745|ref|ZP_01214938.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
gi|90312198|gb|EAS40290.1| Flp pilus assembly protein TadC [Psychromonas sp. CNPT3]
Length = 288
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 124/240 (51%), Gaps = 6/240 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + V++ + +L AGF ++ + + +LV ++ + + L
Sbjct: 54 LPTLKVNKKLNIQLLRAGFNNDNASLYFRLFKLVFMLLCFGAYLGYKHFSL------TSL 107
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ + W+ ++ S+I A PDALDL++ICVESG++++ RV
Sbjct: 108 VLAEAAIVAMISGMVCERWLIARAKRITSNIALATPDALDLMVICVESGLTLEAMFGRVG 167
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+++ LS + L+T EL L R A +N NR + + N +L Q+++YG SI
Sbjct: 168 QEMYQICPELSRQWLITEVELRLLEPRSRALKNLANRCAVVEIENLVISLSQAEKYGGSI 227
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+LR++ +++R ++ + E+K + K+ +P+++ + ++++I+ P +S++ T+ +
Sbjct: 228 AQTLRLIATDSRQKQYLSLEEKVGKIPAKMALPLVLLVMLPVVVLIVAPTFISLLSTLGE 287
>gi|329890993|ref|ZP_08269336.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
gi|328846294|gb|EGF95858.1| bacterial type II secretion system protein F domain protein
[Brevundimonas diminuta ATCC 11568]
Length = 327
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/314 (14%), Positives = 121/314 (38%), Gaps = 23/314 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ A+ ++I + + +V S + KR K++ R + ++ +R +
Sbjct: 5 ILAAVLAFITIGGVGWVLVGGDDSSSQAVKRAKTMGGVRAEAAASAKRAAAANTPEARRK 64
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +++++ + + KL+ AG S+ +++ + ++ +L +
Sbjct: 65 QILLQ-----LQEVDRRERKARMTMGAKLKQAGL--SLSVRTFVIISVAAGLVGALLAFV 117
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + G P I + R A+ DA+D+L+
Sbjct: 118 LGANI-----------IIVLGVGVAAGLGLPRWIIGMKAKARMKKFSLAFADAIDILVRG 166
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++G+ + + +A PL+ E + + A + Y R ++
Sbjct: 167 IKTGLPVHDCFKIIAR---ESPEPLAGEFRTLVEGMGVGLTLAQALDKMYERMPTPELKF 223
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + G ++ ++L L + R+ R+M + KA S + +I P ++++
Sbjct: 224 FAIVIAIQQKSGGNLAEALGNLTTVLRARRMMVEKIKALSSEAIASAGIIASLPPAVMIL 283
Query: 314 II--GPAILSIIDT 325
++ P+ + ++ T
Sbjct: 284 VMLSNPSYMMLMFT 297
>gi|257139285|ref|ZP_05587547.1| hypothetical protein BthaA_08776 [Burkholderia thailandensis E264]
Length = 253
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 99/252 (39%), Gaps = 6/252 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + L +V E L G+ ++ I L R+ I ++
Sbjct: 3 DRAGKFGMRLLDTRLGKQIVAEEDRMLLEQCGYVDAHTRGIFLSARIACSIALPAAVALF 62
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + V L GF P +++ R+ S+ P +D+L +
Sbjct: 63 GSATVRTHLSAW------VALSVIAGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQ 116
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G+S+DQ+++ V D G LS E+ + + R+ + + + +R
Sbjct: 117 GVGLSLDQSIQVVTNDFKGMLPVLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAI 176
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ LIQ D++G ++ + L+ R R ++ L K+T MI+ LP L +V
Sbjct: 177 VRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMILTLLPALFIVT 236
Query: 315 IGPAILSIIDTM 326
GP +L++ +
Sbjct: 237 AGPGMLAVTHAL 248
>gi|320161468|ref|YP_004174692.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
gi|319995321|dbj|BAJ64092.1| putative bacterial type II secretion system protein [Anaerolinea
thermophila UNI-1]
Length = 323
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 107/308 (34%), Gaps = 33/308 (10%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
L + I AV++ LI +V+ +S+ ER + +++
Sbjct: 1 MIDFTLILIIGGAVAVIMLIVGIVVSITSE-------RSLVEERLGRYIETPAPVKERQT 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + +K + ENI +L A + ++ I +
Sbjct: 54 QAPVTEWLNKQVA---------GSSFGENIARELARADIK----------LKAGEYIALM 94
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ + L + + +G P ++ + KR PD L+
Sbjct: 95 IISAFLVGFVFYFLGD---KNMLVGLAGAAIGLFLPRFYVKSQQAKRLVKFNEQLPDMLN 151
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++ + +G S QA+ V++++ P+ +E + E+ Q A +N R
Sbjct: 152 LMVNGLRAGYSTMQAMEAVSKELP---PPICDEFRRVVQEMQLGVPMQQALDNLLRRIPS 208
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D + A+ G ++ + L + R ++ E + + + + +P
Sbjct: 209 DDLDLVVTAINVQREVGGNLAEILDTISFTIRERVRIKGEIRVLTTQV-MYSGRFLAMMP 267
Query: 309 VLILVIIG 316
+ ++ ++
Sbjct: 268 IFVMGVLY 275
>gi|254506705|ref|ZP_05118845.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550286|gb|EED27271.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 322
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/294 (15%), Positives = 115/294 (39%), Gaps = 27/294 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
I ++ + A+++P+ GS K++ R ++ + + A
Sbjct: 1 MQQDATLFYILLFFAVVFISQALILPAAGSKAKHKQLSQ--------RLKESQAKLDEEA 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ KSL ++ L + + ++ + +G+ ++SL L V L++ +
Sbjct: 53 RSLLQEHYMKSLTPMDRR--LVKVPLFSSLKKTIELSGY--DWSLGQTLAVTLILSVCAF 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ ++ + + W++ + R +S + P+ALD
Sbjct: 109 LIVLLLG------------QPFYIGLAASVGIWFILYFWLNKRISDRLASFEEQLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V ++ P+ E T L+F + ++A RT
Sbjct: 157 IMRRMLQAGQPVTQAFNEVGNEMPD---PIGTEFKNTFNLLNFGYDMRMAIMQMAERTPT 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + A++ G ++ ++L + RS ++ + K S +L+ +
Sbjct: 214 VSMLAFSSAVLLQKETGGNLSENLEKVSKVLRSRFKLQRKIKTLSAESRLSAWI 267
>gi|78066135|ref|YP_368904.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
gi|77966880|gb|ABB08260.1| Flp pilus assembly protein TadC [Burkholderia sp. 383]
Length = 332
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/320 (16%), Positives = 122/320 (38%), Gaps = 9/320 (2%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ V + ++I ++ L++R +V A+ R
Sbjct: 15 SIGVLLLAVLAIVRVVLVQRAERALVNALDRRTAAVEAAAARAGSADPARDAAGHAAPRA 74
Query: 73 RTRDSKS----LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + + + L+ + L GF + + + R+ ++
Sbjct: 75 RLAGLRERFEDVGMRWLETGFSRYLIADEDRQLLEQCGFVDVRARALFVSARIACAVLLP 134
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L ++ + + + V G+ P +++ R+ SI P +D
Sbjct: 135 ALAVLVLISRGHGGRWALWISV-----ALVTGYMLPKIYVRRRATARRRSISAELPLLVD 189
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + G+S+DQ+++ V D LS E+ + + + R+ + + N
Sbjct: 190 MLRLLQGVGLSLDQSIQVVVHDFQTMLPVLSWELAVAQRQFAAGRTREQSLQRLTNSFDN 249
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+ LP
Sbjct: 250 EDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREGRRATLREQIGRLTVKMTGVMIVTLLP 309
Query: 309 VLILVIIGPAILSIIDTMKD 328
L++V GP +++++ + +
Sbjct: 310 ALLIVTAGPGVMTVLAALAE 329
>gi|325518470|gb|EGC98169.1| pilus assembly protein [Burkholderia sp. TJI49]
Length = 211
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/214 (21%), Positives = 96/214 (44%), Gaps = 5/214 (2%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L R+ I+ +L I+ G K + + + + +GF P +++ R
Sbjct: 2 FLSARIACGIVLPLLFAIFASGRMKGGYW-----LIGMFVAFGLGFMLPKLYVQRRASSR 56
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ S++ P +D+L + G+S+DQ+L+ V D G LS E+ + + R
Sbjct: 57 RQSVEDELPLFVDMLRLLQGVGLSLDQSLQVVTNDFRGMMPVLSSEVGIAQRQFVAGRTR 116
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + + + + +R + ++Q D++G ++ + L+ R R ++ L
Sbjct: 117 EQSMQRLSGGFENEDLRAIVRLMVQVDKHGGAVQEPLKQFGDRLRETRRSMLRERIGRLT 176
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
K+T M++ LP L++V GP L++ + H
Sbjct: 177 VKMTGVMVLTLLPALLIVTAGPGFLAVTRALATH 210
>gi|170022929|ref|YP_001719434.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169749463|gb|ACA66981.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
Length = 277
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/180 (21%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ +L AP + I N + KR +++ ++ P +D+ CV+SG++I+ +L
Sbjct: 98 LLTIGLLSIITTLYAPRMIIKNALTKRTNTLLKSLPFFIDITAACVQSGMTIENSLNYTT 157
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ + L M + A + + ++ L S +G+++
Sbjct: 158 QKFQTINTDLCLIMSKVTKRAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSLSFGSTV 216
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L L + R +L+ E+ + L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 217 YEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 276
>gi|84687273|ref|ZP_01015153.1| Putative Flp pilus assembly protein TadB [Maritimibacter
alkaliphilus HTCC2654]
gi|84664706|gb|EAQ11190.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2654]
Length = 322
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/306 (15%), Positives = 109/306 (35%), Gaps = 29/306 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+T++ + +++ L+ + + G S+ ++
Sbjct: 4 STDIIIYGVIFIAVLLLVEGIYLTVFGKS------ISLNSRVNRRLDMLEKGAGREQVLE 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+LR + + N K + + + K + A + ++ L
Sbjct: 58 QLRKEMHQHM-------NAKGMPLYSLLAEKAQKANI---------AFTPKQIMMLMAGL 101
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ G +R+ I +G G WI+ +KR + + PDA++L+
Sbjct: 102 SVVAYLGLTMGTGAGTGVRILLSIAMGVGGVYV---WINGKAKKRMAMFEEQLPDAVELM 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G A++ VA+++ PL E+ + E ++ + + + R M
Sbjct: 159 VRSLRVGHPFSSAIQIVAKEVPD---PLGSEIGIIADESAYGRDIGDSLKAMAERMDMQD 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R A+ G ++ + L L RS + KA + K + + P+L
Sbjct: 216 LRFLAVAVTIQQTSGGNLAEILDGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSGFPIL 274
Query: 311 ILVIIG 316
+V+I
Sbjct: 275 AIVMIN 280
>gi|152983555|ref|YP_001350203.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
gi|150958713|gb|ABR80738.1| hypothetical protein PSPA7_4867 [Pseudomonas aeruginosa PA7]
Length = 303
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/301 (19%), Positives = 125/301 (41%), Gaps = 6/301 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
LI+A V+ +LG G L + L ++++ L + ++ + +
Sbjct: 6 LIFAAVLMALGGGLLLLLQARNGSREQRLIEKRLGGLANPGGAGDWLAGMTERMDDSFWV 65
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L+ + D L+ AG+ + + L + + +L ++ + L
Sbjct: 66 RRLQLM--DSEARQLLQQAGWHASRHRTLYL----ISVFLTPLLFVLLVLLARLLRAESE 119
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
++ +GF P + + + R++ I + L+ I ++G++++QALR
Sbjct: 120 ASHAVPLLFAAGIGFLLPKQVLKHFAKARRALIAEEMILFVQLIRILFDAGLTVEQALRV 179
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V ++ G + L+ E+ L +A + E R Q+D + + L Q R G
Sbjct: 180 VCQEGRGITPQLARELDLALARAGNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGG 239
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S +L L RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 240 SARGTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAISKAL 299
Query: 327 K 327
Sbjct: 300 G 300
>gi|284029668|ref|YP_003379599.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283808961|gb|ADB30800.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 312
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/314 (17%), Positives = 106/314 (33%), Gaps = 7/314 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L + L+ +P L ++ R+ R++ + +
Sbjct: 1 MSPTVLGGLLGAVFGAGLLLVVRRLPFLRKPTVDDRIGPYL--RDLAGADVFLGVTDSGS 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + + +I +L AG + S+ + +++
Sbjct: 59 PFHAMLRMFGPSLRAGAVRLERILGGAASIRRRLARAGI--DRSVEEFRIEQVLWGTAGF 116
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
G++ + L+ +G + +++ V+KR+ + P +
Sbjct: 117 GGGLLVSLIALSFGAGNPVGLLVFCALLAVLGVLSRDTYLTGQVRKRERRLLAELPTVAE 176
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + V +G AL RVA G L++E+ +AE + A + +RT +
Sbjct: 177 LLALSVAAGEGPAAALDRVARSCRG---ELADELQRVLAETRAGSSLVRALDGLADRTGL 233
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ L + GT + D LR + R E + A + VP++ LP
Sbjct: 234 VALSRFADGLAVALERGTPLADVLRAQAGDIREASRRELIESGARREVAMMVPVVFLVLP 293
Query: 309 VLILVIIGPAILSI 322
V I P + I
Sbjct: 294 VTIAFAFYPGAVGI 307
>gi|33596973|ref|NP_884616.1| hypothetical protein BPP2380 [Bordetella parapertussis 12822]
gi|33566424|emb|CAE37677.1| putative membrane protein [Bordetella parapertussis]
Length = 328
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 127/325 (39%), Gaps = 3/325 (0%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSL 63
L ++ + + A+ + ++ AVV + + ++R ++V R +
Sbjct: 1 MDRLLADSQTRMLLVAALPVLMVVCAVVGVALVARAGRQQRSRAVVDRALAARDGHVAEP 60
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ + + + ++ L L+ + + A GFR+ ++ ++
Sbjct: 61 PPAGRMAAVASAAEHAGAK-LEHGKLGDSLLAIDDRKLIDACGFRNPARARAWFMLARLL 119
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
L + + E P AV L +G+ P + + +R+ +
Sbjct: 120 LAGLAPLAAWLVL-RARHAEMPLAYVACAVFLGFGLGWMVPKWMLLRRIARRRECAEAEL 178
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +DLL + G+S+DQ++ + +D L E+ + + + R+ +
Sbjct: 179 PLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLA 238
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
D + + ++Q DR+G ++ D L R R +E + + A L K+T M+
Sbjct: 239 QGFDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLELKARVARLTVKMTGVMV 298
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+ LP L+++ G ++++ M
Sbjct: 299 VTLLPALLIITGGSGFVALLRGMSQ 323
>gi|188592036|ref|YP_001796634.1| type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
gi|170938410|emb|CAP63397.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
Length = 356
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 6/264 (2%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
++L R + + L +V L G+ + + V+RL +P
Sbjct: 94 ATGLGAQLGARVGERFDAHWLESRLGRAVVTPEDQQLLEQCGWYGLQARVVFGVLRLGLP 153
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L ++W L V V + AP ++ +R + P
Sbjct: 154 MALSALAMLW------HLGASGFAVVAWGFGTFAVAYLAPKWYLRRRAAERLRRVDDELP 207
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + G+SIDQ+L+ + + G L E+ + + +R+
Sbjct: 208 VLIDMLRLLQGVGLSIDQSLQVIVAEFGSMLRVLGPELARANQQFASGRSREQTLLRIGR 267
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +++ L Q D++G ++ + LR + R + + L K+T M++
Sbjct: 268 LFDSEDLKSLITLLTQVDKHGGAVQEPLRQFGLRMQEARKSRMKDEIGRLTVKMTAVMVV 327
Query: 305 FFLPVLILVIIGPAILSIIDTMKD 328
LPVL+++ GP L +I + +
Sbjct: 328 SLLPVLLILTAGPGFLGVIRMLAN 351
>gi|221066735|ref|ZP_03542840.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220711758|gb|EED67126.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 338
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/237 (18%), Positives = 100/237 (42%), Gaps = 7/237 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
L+ + L AG ++ + R+++ + +L I+ L +
Sbjct: 104 KSLLADEDRKLLDQAGISLRNGGSVFVASRMILAVAMPLLAILVFQPRGIHL-------L 156
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
G P +S +R+ + P +DLL + G+SIDQ+L+ ++++
Sbjct: 157 MYGFFGFGGGLMLPKWLVSYKSSQRREQVVEELPLFVDLLRLLQGVGLSIDQSLQILSQE 216
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G LS E+ + + +R + + + + + L+Q DR+G ++
Sbjct: 217 FGSVLPVLSSELAMANQLYASGRSRDQSLQRLTHLSDDQDMTAVVNLLVQVDRHGGAVQG 276
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L+ R +R ++K ++ K+T M++ LP L+++ GP +++I ++
Sbjct: 277 PLQDFGIRLREKRQARFKEKIGAITVKMTGVMVLTLLPALMVITAGPGFMAVIRSLS 333
>gi|296122168|ref|YP_003629946.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014508|gb|ADG67747.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 321
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 106/314 (33%), Gaps = 28/314 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +++T V + + + A+ +G KR + L+ + + +L
Sbjct: 4 LMISLTVFVGVSAFVGAIASLLMGGNS--KRAEDRLDVLAGLKTSEEQTKITKDELVKLS 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
++ + + I A S L L++ + I+ LG+I
Sbjct: 62 SQTIDGALGLL-------MERFRGIGLFFEQA--DSPIGLRSFLLISVSCGIVGAALGLI 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L G + P +W+S +KR + PDA++L+
Sbjct: 113 ------------GNAPTPLLPLFGLLTSTFPFIWLSFRRKKRFKQFAKQLPDAMELMGRA 160
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG S+ L V +++ P+S+ + + A + + +
Sbjct: 161 LRSGHSLASGLHLVCDEM---PPPISQVFRSAYETQNLGVPVESALKESLKKMPNLDYKF 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--VPMIIFFLPVLI 311
A+ + G + + L + R + +A + +L+ V M +
Sbjct: 218 FVTAVAIQRQTGGDLAEILDKISEVIRERFKILGTVQALTGEGRLSGAVLMAMPIAIFFA 277
Query: 312 LVIIGPAILSIIDT 325
+ + P + ++ T
Sbjct: 278 VYYLNPNYVMVLFT 291
>gi|302521640|ref|ZP_07273982.1| integral membrane protein [Streptomyces sp. SPB78]
gi|318057612|ref|ZP_07976335.1| hypothetical protein SSA3_06724 [Streptomyces sp. SA3_actG]
gi|318080452|ref|ZP_07987784.1| hypothetical protein SSA3_28136 [Streptomyces sp. SA3_actF]
gi|302430535|gb|EFL02351.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 300
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 70/311 (22%), Positives = 121/311 (38%), Gaps = 26/311 (8%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ +A+ A + + + + + K L DSA
Sbjct: 5 TLGVLLALLMAAGVGGALLGLRMYRSET-------KLPDDLALALEVGSTRVKAADSAVD 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
RL R + + L L E ++ AG +L+ R V I L++
Sbjct: 58 RLGLRFAPYV------LKLMGPRRVEAKRRRIDMAGNPGGLTLDRYAARRAVYGIFGLLM 111
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
I+ L G A I V++R+ I R PD LD+L
Sbjct: 112 AAIFASYGSP----------LFAFLALGFGLVAADATIWQAVRERRDVIDRTLPDFLDVL 161
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V +G+ QAL RVAE G P ++E+ +T+ ++ +R+ AF+ R +
Sbjct: 162 AVVVSAGLGFRQALERVAEKYEG---PWADELRITLRQMDMGVSRRQAFDELRRRNNSEQ 218
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V AL Q + G+ I ++L + ++ R +A ++AA PK T+ ++F LP
Sbjct: 219 VAQFVSALQQGEELGSPIAETLIQIANDMRRTDAQQARRRAAKTIPKATMVTLVFMLPAT 278
Query: 311 ILVIIGPAILS 321
+++I L
Sbjct: 279 MILIATGMFLG 289
>gi|32473986|ref|NP_866980.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
gi|32444523|emb|CAD74522.1| secretion system protein TadB [Rhodopirellula baltica SH 1]
Length = 347
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/307 (14%), Positives = 111/307 (36%), Gaps = 32/307 (10%)
Query: 12 TELAVAITTAVSIFSLIY---AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + + V + SLI +V++PS + E R+ +A ++ + S
Sbjct: 28 SSIIIIVAAGVFVASLIAFGASVLMPSEETTATEDRLTQLAHG----KRGAESDSSTPSF 83
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ L+ ++ + L A + ++ ++ +
Sbjct: 84 LLNDLDDATGLLKTITDRI--------PAVHKILEQADI--DLTVTKFAMICGGCFAAGM 133
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L ++ + + ++G AP ++ ++R P+AL+
Sbjct: 134 VLCVV------------TPIPILLGPIVGATFVGAPVFYVMFKRKRRLKRFGEQIPEALE 181
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G S++ V +++ PL+ E E F + E+ R
Sbjct: 182 LLGRSLRAGHSLNAGFGLVGDEME---APLATEFRRCFEEQKFGIPLDESIEDMAERVPN 238
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A+I + G + + L + R + +A + +++ +++ P
Sbjct: 239 MDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGEGRMSGAVLLALPP 298
Query: 309 VLILVII 315
VL LV++
Sbjct: 299 VLFLVML 305
>gi|83943935|ref|ZP_00956392.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
gi|83954508|ref|ZP_00963219.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83840792|gb|EAP79963.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. NAS-14.1]
gi|83845182|gb|EAP83062.1| type II/IV secretion system protein, TadC subfamily protein
[Sulfitobacter sp. EE-36]
Length = 320
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 53/301 (17%), Positives = 114/301 (37%), Gaps = 29/301 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V + L+ + + + G S+ + + +++ +LR
Sbjct: 6 IIYGLIFVGVLVLVEGLYLVAFGKS------ISLNSKVNRRLEMLEKGARREEVLDKLRK 59
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + N K+I V + K + A +L++ + L +
Sbjct: 60 EMQQHMDN-------KSIPVYSLLAEKAQKA-------AIAFAPKQLIMIMAGLSVVAFL 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
E P ++ + I +G V F WIS+ +KR I+ PDA++L++ +
Sbjct: 106 GLTIGTNTEVPVRILISVGIGVGAVFF-----WISSKAKKRMDMIEEQLPDAVELMVRSL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ V+++I PL+ E + E ++ + A ++ R M +R
Sbjct: 161 RVGHPFTSAISIVSKEIQD---PLASEFGVIADETAYGRDIGEALKDMAERLDMQDLRFL 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + +A + K + + P+L L++
Sbjct: 218 AVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVRAITAEAKWSGK-FLSAFPILALIV 276
Query: 315 I 315
I
Sbjct: 277 I 277
>gi|163846104|ref|YP_001634148.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222523839|ref|YP_002568309.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
gi|163667393|gb|ABY33759.1| type II secretion system protein [Chloroflexus aurantiacus J-10-fl]
gi|222447718|gb|ACM51984.1| type II secretion system protein [Chloroflexus sp. Y-400-fl]
Length = 332
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/282 (12%), Positives = 90/282 (31%), Gaps = 14/282 (4%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ + Q + + +I +L A
Sbjct: 31 LMRQSATADVAQRLETFAGGKAQERSNEPIARQAIERIDAVVAKSKQGSSIQRELARADL 90
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ ++ + ++L ++ ++ G I F ++GA V P+++
Sbjct: 91 --KLTVAEFIGLKLGAALLGVVFGFIL-------GRANFLAQIGAATAAAIVFSFLPNLY 141
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ +R + D + ++ + G S Q L V+ P + E +
Sbjct: 142 VNMRAAQRIKAFNNQLGDVITMMANALRGGYSFLQTLDMVSR---EAPPPAATEFRRVVQ 198
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E+ + + A +N R D + A+ G ++ L + R ++
Sbjct: 199 EVGLGRSTEEALQNLLRRMPSDDLDLLITAVTIQMEVGGNLAQILDTIGHTIRERVRIKG 258
Query: 288 EKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDTMK 327
E + +++ +I + + + ++ P ++ + T
Sbjct: 259 EISTLTAQGRISSWIITGLPIGLAMFITVVNPDYMAPLFTFG 300
>gi|119715490|ref|YP_922455.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536151|gb|ABL80768.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 312
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 116/314 (36%), Gaps = 7/314 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ L+ A + + +L R+ R++ + L+ S+
Sbjct: 1 MTPAVWGALLGAVAGSGLLLVAARVRVIRRPQLAVRVLPYV--RDLPLVGRAPQLRVASS 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S+ + + + ++ +L+ AG + +++ + +++ ++
Sbjct: 59 STSAAAGVFGPVLRSAADAVERILGGATSVRRRLQRAGL--DKTVHEFRIEQVLWGVVGF 116
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ W + A + VG A ++++ V+ R+ I +P +
Sbjct: 117 AVAAAWGVLRMLTQPGAAVSSLLACAVAFIVGVLARDTYLTSQVRARERRILAEFPTVAE 176
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + V +G AL RV GG LS ++ +AE+ AF+ + + +
Sbjct: 177 LLALAVAAGEGPVAALDRVVRRSGG---ELSADLARVLAEIRTGEPVATAFDAMASASGL 233
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V Q + + GT + D L ++ R E + AA + VP++ LP
Sbjct: 234 PLVARFAQGIAVAVERGTPLADVLHAQAADVREAGRRELIEAAARKEVFMMVPVVFLVLP 293
Query: 309 VLILVIIGPAILSI 322
+ +L P ++ +
Sbjct: 294 ITVLFAFWPGVVGL 307
>gi|269126092|ref|YP_003299462.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268311050|gb|ACY97424.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 660
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/315 (14%), Positives = 112/315 (35%), Gaps = 22/315 (6%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKS--VAVEREILRKQQITSLQKDSASSRLR 73
+A ++ + +A ++ + R + AV E R + S + A
Sbjct: 333 LAGLPLPAVLGVCFAAILLLILVVGGLGRREPPEWAVRIERYRLRARPSPAEPDAEESRA 392
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + + + + L AG + ++R+V+ +
Sbjct: 393 RNPLMRGALTLSMKITGSGRLAQRLAQDLDRAGILLR--PHEWTLLRIVIGACLTAVVTP 450
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + A + + + A ++ ++R ++ PDAL L+
Sbjct: 451 LVGNV-----------LLAAPPVAVITWVATRAYLRGRAERRLTAFADQLPDALQLVAGS 499
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG S+ Q++ R+A G + P+ +EM +A+ + + A + +R +
Sbjct: 500 LRSGFSVAQSVERLA---GLELQPMGQEMARAVAQTRLGVSTEDALRSVADRMNCRDLHW 556
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ G ++ + + R + + +A S +L+ ++ LPV+
Sbjct: 557 VVLAIQIQREVGGNLSEVIETTAETMRERTRLRRQIRALSAEGRLSA-YVLIALPVITGG 615
Query: 314 IIG---PAILSIIDT 325
++ P + + T
Sbjct: 616 LLTVSRPDYMRPLYT 630
>gi|225872757|ref|YP_002754214.1| bacterial type II secretion system protein F domain protein
[Acidobacterium capsulatum ATCC 51196]
gi|225792618|gb|ACO32708.1| bacterial type II secretion system protein F domain protein
[Acidobacterium capsulatum ATCC 51196]
Length = 323
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/277 (14%), Positives = 91/277 (32%), Gaps = 24/277 (8%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
F++I + PS ++ +R+ ++ + ++ + L + F+
Sbjct: 15 FAMIAVLSRPSKQEKKVYQRLDALTSRGSV--QENKAGTPETLLKQPLGAGSVARVDAFL 72
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
+ + + + A + +L+ I I +
Sbjct: 73 DRFDF-----YPRLEKIILQA--HRNTTPGRVLLQTGGFCIGGFIAARLLY--------- 116
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++ I +G P V ++ +R A PD++DLL + +G S+ A+
Sbjct: 117 ---PQLIVEIGAPVIGLVFPFVALNFQRAQRLKKFNAALPDSIDLLGRALRAGHSVASAI 173
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V+E P++ E +F + A R +R A++
Sbjct: 174 EVVSEQGQE---PVASEFGEVFRAQNFGLPFRDAMLQLAERVPSSDLRFLVTAMMVQKET 230
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
G ++ + L R ++ E K + +LT
Sbjct: 231 GGNLTEILDRTTYVIRERLRIQGEVKTKTAQGRLTGV 267
>gi|83716413|ref|YP_440463.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|167617238|ref|ZP_02385869.1| Flp pilus assembly protein TadB [Burkholderia thailandensis Bt4]
gi|257141111|ref|ZP_05589373.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
gi|83650238|gb|ABC34302.1| Flp pilus assembly protein TadB [Burkholderia thailandensis E264]
Length = 325
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 107/294 (36%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G KR+++ +R + S L+ R + F L +
Sbjct: 26 WWNARHGPAAKRIEA------RIRAMSAGGQVQKERLSILKERMLNEAKPF--DRLLMRV 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + + +G +S+ L + L +P + + L +
Sbjct: 78 PRVQTLDLLIEQSGL--TWSVVKLAWISLAIPFVVFVALSF------------TPLPLWV 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ C P++ + +R ++R PDA D++ + +G + A+ V +
Sbjct: 124 AAVASIATVCLPTLLVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ Q A N R + +R A++ G ++ + L
Sbjct: 184 D---PMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIALLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLAIMNPDFISVL 293
>gi|49084732|gb|AAT51226.1| PA4300 [synthetic construct]
Length = 304
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 124/301 (41%), Gaps = 6/301 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
LI+A ++ ++G L + L ++++ +L S+R ++ + +
Sbjct: 6 LIFAALLMAVGGALLLLLQARNGSREQRLIERRLGALANPGGSTRWLAGMTERMDDSFWV 65
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L+ + D L+ AG+ + + L+ + +L ++ + L
Sbjct: 66 RRLQLM--DSEARQLLQQAGWHE----SRYRTLYLISVFLTPLLFVLLVLLVKLLRAESE 119
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
++ +GF P + + + R++ I + L+ I ++G++++Q LR
Sbjct: 120 ASYAVPLLFAAGIGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRV 179
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V + G + L+ E+ L + + E R Q+D + + L Q R G
Sbjct: 180 VCLEGRGITPQLARELDLALTRADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGG 239
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S +L L RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 240 SARSTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITKAL 299
Query: 327 K 327
Sbjct: 300 G 300
>gi|167579123|ref|ZP_02371997.1| Flp pilus assembly protein TadB [Burkholderia thailandensis TXDOH]
Length = 325
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 107/294 (36%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G KR+++ +R + S L+ R + F L +
Sbjct: 26 WWNARHGPAAKRIEA------RIRAMSAGGQVQKERLSILKERMLNEAKPF--DRLLMRL 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + + +G +S+ L + L +P + + L +
Sbjct: 78 PRVQTLDLLIEQSGL--TWSVVKLAWISLAIPFVAFVALSF------------TPLPLWV 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ C P++ + +R ++R PDA D++ + +G + A+ V +
Sbjct: 124 AAVASIATVCLPTLLVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ Q A N R + +R A++ G ++ + L
Sbjct: 184 D---PMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIALLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLAIMNPDFISVL 293
>gi|322419940|ref|YP_004199163.1| Type II secretion system F domain-containing protein [Geobacter sp.
M18]
gi|320126327|gb|ADW13887.1| Type II secretion system F domain protein [Geobacter sp. M18]
Length = 321
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/307 (15%), Positives = 107/307 (34%), Gaps = 29/307 (9%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
T +++F L +AV + ++ K R + ++ R+
Sbjct: 9 TFLAVFCLCFAVYLGV---STVKSSPKYELKRRLQRLARDKSAQGMPEDLRSEIIREIPP 65
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
L + KL L ++ KL +G + S ++
Sbjct: 66 LDRILAKLPLTR-----DLDKKLDYSGLKITASR--------------FLIIAASATVVA 106
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+L + A +L + P ++ +++R +PDAL ++ + +G S
Sbjct: 107 FILILLLSKLILAALLGAVLVSLIPFAFLHFKIRQRLEKFTELFPDALTMIARSLRAGHS 166
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ A++ V E+I P+ E + N R + +R T A+
Sbjct: 167 FNSAIQLVGEEIAD---PVGELFKTAYEQQLLGLRITETLTNLNERIESLDLRFFTTAIA 223
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI---IG 316
++ G ++ + L L R + + + + ++T ++ LPV +I +
Sbjct: 224 INNDVGGNLSEILENLAKTIRERLKIRRQVRVYTAQGRMTG-YVLGALPVFTFLIFNVLN 282
Query: 317 PAILSII 323
P S++
Sbjct: 283 PKYESVL 289
>gi|296133931|ref|YP_003641178.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032509|gb|ADG83277.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 294
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 4/219 (1%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
A + V + + + E + V +IL + +
Sbjct: 77 AELFGQRETCTYFAVHIAQKAALMTASAFFFSITYLAGEAEYSFLVFGLILSALL-YYWV 135
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ ++ ++ I P ++ L + + +G+ A+ +V D PL +EM
Sbjct: 136 DKDLEKKLKMKKRQILIELPGFINTLALLINAGLPFSSAVHKVVHD-SDPDRPLYKEMNY 194
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSER 283
+A++ A+E+F R ++ + +IQ+ G I LR L E +R
Sbjct: 195 VLADIGAGKPIHQAYEDFARRCRIPEITRFVSTIIQNLNRGNGDIVYVLRTLAQEAWEKR 254
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A K+ KL PM++ F+ V I+V + PAI+++
Sbjct: 255 KDIARKQGEEASSKLVFPMVMVFIAVAIIV-LAPAIMTM 292
>gi|225174957|ref|ZP_03728954.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225169597|gb|EEG78394.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 322
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/316 (15%), Positives = 118/316 (37%), Gaps = 26/316 (8%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ V + ++ L+Y + R+ + + + S
Sbjct: 1 MQFIVLVGAFLTAVFLVYGLYGLLFSR-----RLAVLDRLEMQTMEPEEMWHADISKRQG 55
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
LR + + L K + K+ L +++ KL A + + + +V I +L
Sbjct: 56 LRQQSLQILGAMGKMFSRKSYL--DSMHRKLIQA--HILLRPDEFIGLVMVSGIGAALLF 111
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ +L+ +GF AP +++ +R ++ P+AL+++
Sbjct: 112 FLLTG------------SFLMAVLVAVIGFKAPGIYVDVAKGRRMQALNNQLPEALNIIS 159
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G S QA+ V ++ P+++E + + + A RT + +
Sbjct: 160 SGLRAGYSFPQAMAVVGREMD---APIADEFNRVLRDNRLGKSMDDALLEMTARTDNEDL 216
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPV 309
+L+ + G ++ + L + R ++ E +A + +++ +I+
Sbjct: 217 DLVVTSLLIQRQVGGNMAEVLNKIEHTIRERMRIKGEIRALTAQQRMSAVIIVLLPIAVA 276
Query: 310 LILVIIGPAILSIIDT 325
L+L++I P + + T
Sbjct: 277 LLLLVINPEYMLTLVT 292
>gi|167399416|ref|ZP_02304940.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167051920|gb|EDR63328.1| type II secretion system protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 205
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/205 (20%), Positives = 93/205 (45%), Gaps = 1/205 (0%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I+ IL I+ I ++ + + +L P + I N + KR +++ ++
Sbjct: 1 MIVIFILSILTILAIFNVVNINQKTLLTIGLLSIISTLYLPRMIIKNALTKRTNNLLKSL 60
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P +D+ CV+SG++I+ +L + + L M + A +
Sbjct: 61 PFFIDITAACVQSGMTIENSLNYTTQKFQTINTDLCLIMSKVTKRAEIN-GLENAIKELQ 119
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ L S +G+++ + L L + R +L+ E+ + L KLT+P+
Sbjct: 120 YYSPAIEMKMFCSTLQYSISFGSTVYEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLF 179
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+F L +L++I P+IL +++ +K+
Sbjct: 180 LFILIPFVLLVISPSILELLNYVKN 204
>gi|300692335|ref|YP_003753330.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
gi|299079395|emb|CBJ52066.1| Tad secretion system, pilus assembly protein [Ralstonia
solanacearum PSI07]
Length = 325
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/321 (13%), Positives = 120/321 (37%), Gaps = 25/321 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + A + +++ + K + E+ + S
Sbjct: 1 MNPSLVGFAASLFIAVVLGAIGFYLWWNSRHSPTA--KRLNQRLEMALFSLSGKDAQTSI 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ +S + +++ I + L +G ++S++ L + L +P++
Sbjct: 59 LKQRVLAESTDIARLLQR-----IPHVNALDMTLLQSGL--DWSVSRFLTLTLALPVVAC 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++ + ++ I + P+++++ +R ++ P+A D
Sbjct: 112 TVAALFA------------PPLVLLLGIAALAGALPTLYLARCRARRLRKLEAQLPEATD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G S AL ++ P++ E L +E+++ A F R +
Sbjct: 160 LLARALRAGHSFPSALDMAGSEL---PAPIASEFALVFSEINYGVPMGEALAAFSRRVPI 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +R A++ G ++ + L + + R + + + S +L I+ +P
Sbjct: 217 EDLRFLVIAVLIQRESGGNLAEILDNIGTLIRKRLQLLDKIRVLSAEGRL-GGWILSLMP 275
Query: 309 VLILVIIGPAILSIIDTMKDH 329
++ V++ +++ ++ H
Sbjct: 276 PVLGVLMYFLNPTLVSSLWTH 296
>gi|170750193|ref|YP_001756453.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656715|gb|ACB25770.1| type II secretion system protein [Methylobacterium radiotolerans
JCM 2831]
Length = 325
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 23/283 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ A +R + + R + +K+L K ++ KL A
Sbjct: 33 ERRANKRLKSISVSASGAATRGVAVNRREQVAKTLSEIEAK---AKGASKASVELKLARA 89
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G ++ + + ++F +L + L F G P+
Sbjct: 90 GL--GWTKQTFYGMSALSGVVFGLLLFVITDNALAALGAAFAGGFGL-----------PA 136
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ +L KR + + P+A+D+++ + +GI + R V+ P+ E
Sbjct: 137 YLLRHLRLKRIAKFNKELPNAVDVVVRGIRTGIPVGDCFRMVSR---EAEEPVRSEFRTV 193
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ + + A + R V + + G ++ ++L L + R M
Sbjct: 194 VETQAMGLSLGEACTRLFERVPTAEVNFFAIVINIQQQSGGNLSEALNNLSTVLRDRAKM 253
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ +A S+ K + +I LP + I P +S++ T
Sbjct: 254 RGKVQAMSMEAKASASIIAC-LPFAVAGITALTSPDYISLLWT 295
>gi|167561752|ref|ZP_02354668.1| hypothetical protein BoklE_04253 [Burkholderia oklahomensis EO147]
Length = 234
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 6/230 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
L G+ ++ I L R+ I I E V L
Sbjct: 6 EDRMLLEQCGYVDAHTRGIFLSARIACGIALPAAVAIVG------DETVATHLSAWVALS 59
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
VGF P +++ R+ S+ P +D+L + G+S+DQ+++ V D G
Sbjct: 60 VIVGFMLPKIYVRRRAAARRQSVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFKGMLP 119
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS E+ + + R+ + + + +R + LIQ D++G ++ + L+
Sbjct: 120 VLSSELGIAQRQFVAGRTREQSLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFG 179
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R R ++ L K+T MI+ LP L +V GP +L++ +
Sbjct: 180 DRLREVRRAMLRERIGRLTVKMTGVMIVTLLPALFIVTAGPGMLAVAHAL 229
>gi|302185193|ref|ZP_07261866.1| type II secretion system protein [Pseudomonas syringae pv. syringae
642]
Length = 294
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 112/275 (40%), Gaps = 5/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+ + ++ +R LR ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSITLDSETQMLLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ + + I+ + K ++ P + A I G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMAMVILGQLLFFKGIQQP----LIAPIFALGAGYLLPKRILAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 RRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLMRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKTAALLDVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFMAISRALG 293
>gi|15599496|ref|NP_252990.1| TadC [Pseudomonas aeruginosa PAO1]
gi|107100116|ref|ZP_01364034.1| hypothetical protein PaerPA_01001137 [Pseudomonas aeruginosa PACS2]
gi|116052334|ref|YP_792645.1| hypothetical protein PA14_55860 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893392|ref|YP_002442261.1| TadC [Pseudomonas aeruginosa LESB58]
gi|254239030|ref|ZP_04932353.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
gi|254244889|ref|ZP_04938211.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
gi|9950522|gb|AAG07688.1|AE004846_5 TadC [Pseudomonas aeruginosa PAO1]
gi|115587555|gb|ABJ13570.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170961|gb|EAZ56472.1| hypothetical protein PACG_05207 [Pseudomonas aeruginosa C3719]
gi|126198267|gb|EAZ62330.1| hypothetical protein PA2G_05762 [Pseudomonas aeruginosa 2192]
gi|218773620|emb|CAW29434.1| TadC [Pseudomonas aeruginosa LESB58]
Length = 303
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 124/301 (41%), Gaps = 6/301 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
LI+A ++ ++G L + L ++++ +L S+R ++ + +
Sbjct: 6 LIFAALLMAVGGALLLLLQARNGSREQRLIERRLGALANPGGSTRWLAGMTERMDDSFWV 65
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L+ + D L+ AG+ + + L+ + +L ++ + L
Sbjct: 66 RRLQLM--DSEARQLLQQAGWHE----SRYRTLYLISVFLTPLLFVLLVLLVKLLRAESE 119
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
++ +GF P + + + R++ I + L+ I ++G++++Q LR
Sbjct: 120 ASYAVPLLFAAGIGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRV 179
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V + G + L+ E+ L + + E R Q+D + + L Q R G
Sbjct: 180 VCLEGRGITPQLARELDLALTRADNGIDLAEELEALARRLQVDPLNDCCGVLRQMLRQGG 239
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S +L L RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 240 SARSTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITKAL 299
Query: 327 K 327
Sbjct: 300 G 300
>gi|238782877|ref|ZP_04626906.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
gi|238716300|gb|EEQ08283.1| Type II secretion system protein [Yersinia bercovieri ATCC 43970]
Length = 264
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+G + P V I ++ +R SI ++ P +D+ CV+SG++ID +L
Sbjct: 82 LNSLIGIGFITILATLYLPKVMIKKIIARRVESILKSLPFFIDITAACVQSGMTIDSSLS 141
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
A + LS +L + A + + + ++ L S +G
Sbjct: 142 YAARKFELINPDLSLIILKMAKRAEIN-GLESAIKELHQCSTATEIKMFCSTLQYSISFG 200
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+++ D L L + R +L+ E+K + L KLT+P+ IF L ++++I P++L +I
Sbjct: 201 STVYDQLIKLSQDIREMQLLVTEEKISKLSTKLTLPLFIFILIPFVVLVISPSVLELIAY 260
Query: 326 MKD 328
++
Sbjct: 261 VQQ 263
>gi|170734861|ref|YP_001773975.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169820899|gb|ACA95480.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 325
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 98/308 (31%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+A I T V++ I + R +R +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGAAARRIE-----SRIRAMSAGGNVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + ++ +G +
Sbjct: 56 LSILKKRMLDESKPF--DRLLLRLPRVHALDLVIQQSGLDWTLPK-------------LI 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + + + ++ AV + G+ P ++ KR ++R PD D
Sbjct: 101 TLSATFAALAWFVASFARMPQLAAVPVALVAGW-LPMTYVLRCRAKRMRKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S L V ++ P+ E +T E+++ + A N R +
Sbjct: 160 MIARALRSGHSFTSTLGMVGDEFPE---PMGGEFRVTFDEVNYGVSLHDALTNLATRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 217 QDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAAVMA 283
>gi|296390999|ref|ZP_06880474.1| TadC [Pseudomonas aeruginosa PAb1]
gi|313106819|ref|ZP_07793031.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
gi|310879533|gb|EFQ38127.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
Length = 303
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 54/301 (17%), Positives = 124/301 (41%), Gaps = 6/301 (1%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
LI+A ++ ++G L + L ++++ +L S+R ++ + +
Sbjct: 6 LIFAALLMAVGGALLLLLQARNGSREQRLIERRLGALANPGGSTRWLAGMTERMDDSFWV 65
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L+ + D L+ AG+ + + L+ + +L ++ + L
Sbjct: 66 RRLQLM--DSEARQLLQQAGWHE----SRYRTLYLISVFLTPLLFVLLVLLVKLLRAESE 119
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
++ +GF P + + + R++ I + L+ I ++G++++Q LR
Sbjct: 120 ASYAVPLLFAAGIGFLLPKQVLKHFAKARRALIADEMILFVQLIRILFDAGLTVEQTLRV 179
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V + G + L+ E+ L + + + R Q+D + + L Q R G
Sbjct: 180 VCLEGRGITPQLARELDLALTRADNGIDLAEELDALARRLQVDPLNDCCGVLRQMLRQGG 239
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S +L L RL +++ L K+++ M++ P L++V+ GP +++I +
Sbjct: 240 SARSTLLTLKQLFEDRRLTTLQERIGKLSAKMSLVMMVLLFPALLIVLAGPGVIAITKAL 299
Query: 327 K 327
Sbjct: 300 G 300
>gi|116687152|ref|YP_840399.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|116652867|gb|ABK13506.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 325
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/308 (15%), Positives = 99/308 (32%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+A I T V++ I + R +R +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGAAARRIE-----SRIRAMSAGGNVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + ++ +G +
Sbjct: 56 LSILKKRMLDESKPF--DRLLLRLPRVHALDLVIQQSGLDWTLPK-------------LI 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + + + ++ AV + G+ P ++ KR ++R PD D
Sbjct: 101 TLSATFAALAWFVASFARLPQLAAVPVALVAGW-LPMTYVLRCRAKRMRKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S L V ++ S P+ E +T E+++ + A N R +
Sbjct: 160 MIARALRSGHSFTSTLGMVGDEF---SEPMGGEFRVTFDEVNYGVSLHDALTNLATRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 217 QDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAAVMA 283
>gi|90411199|ref|ZP_01219212.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
gi|90328045|gb|EAS44366.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
Length = 324
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/308 (15%), Positives = 119/308 (38%), Gaps = 25/308 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
I +++ + + +G KR + + + E++ + + S LR
Sbjct: 9 LLVFFIAAVVVSQTVLVSSTGARAKRSRLLKNKLELI----AETSAGHNQQSLLRKHYLD 64
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L ++ L+ V E + L AG + I ++ I
Sbjct: 65 KLTPRERQ--LENNAVGEYLSEHLTLAGLEWKAYKTIFW--------------LVIISFL 108
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
++ + +L+ ++ + + W+ +KR + + +ALD++ + G
Sbjct: 109 STVISLALTKSITFSVLMPFLIVLSFTFWLKYKAEKRLCLFEEQFVEALDVMKRALLVGY 168
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ ++ V++++ P+S E T +EL++ + +VA N R V A+
Sbjct: 169 PFTEVMKTVSQEM---PAPVSVEFGKTFSELNYGVDIKVALANLAQRNPSVSVLAFNSAV 225
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPVLILVIIG 316
I G ++ ++L L R + + ++ S +++ +++ F+ V+++ +
Sbjct: 226 IIQKETGGNLAETLENLSEVIRGRFRLLRKVRSLSAEGRMSAWILMCVPFVLVIMIYLST 285
Query: 317 PAILSIID 324
P L +
Sbjct: 286 PDYLDPLF 293
>gi|239979681|ref|ZP_04702205.1| hypothetical protein SalbJ_09602 [Streptomyces albus J1074]
Length = 309
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L + ++ AG +L+ R V + L+LG++++
Sbjct: 77 LRLMGPRRVDAKRRRIDMAGNPGGLTLDRYAARRFVYGVFGLVLGLVFLTNDST------ 130
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+L G A I V+ R+ I R PD LD+L + V SG+ QAL R
Sbjct: 131 ----LFALLTFAFGLTAADALIWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDR 186
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VAE G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+
Sbjct: 187 VAERYEG---PWADELRITLRQMDMGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGS 243
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I D+L + ++ R + ++AA PK T+ ++F LP +++I L
Sbjct: 244 PIADTLIQIATDMRRTDAQNSRRRAAKTIPKATMVTLVFLLPATMILIAAGMFLG 298
>gi|46143337|ref|ZP_00204444.1| COG2064: Flp pilus assembly protein TadC [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208032|ref|YP_001053257.1| tight adherence protein C [Actinobacillus pleuropneumoniae L20]
gi|126096824|gb|ABN73652.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 281
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I + + ++ + ++ + PS+ I +++ + I P +D
Sbjct: 84 LLVIALLTLINYIVSDDQTTFLLGCAVVVVLAIMFPSITIGVILKSKIKRIMNDIPGFID 143
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + V++GISI+ A ++VA D + L+ +L I + + A ++
Sbjct: 144 LVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAEL-TSLSTALQDMAISLPT 202
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R + QS +G+S+ + L L ++ R +L+ E+K +L K+++P+I+F +
Sbjct: 203 KEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMF 262
Query: 309 VLILVIIGPAILSII 323
+I++I+ P + ++
Sbjct: 263 PIIILIVAPGAMRVL 277
>gi|332671124|ref|YP_004454132.1| Type II secretion system F domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340162|gb|AEE46745.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
484]
Length = 310
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 112/313 (35%), Gaps = 7/313 (2%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
E A A+ ++ ++ V L++R+ R + +
Sbjct: 1 MTPETAGALAGLLASLGVLVVVSRLRARRIRLDQRLAPYL--RPQRSSSALLRSPTTTGP 58
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + + L + ++ +L AG + ++ ++V ++ L
Sbjct: 59 LATVERLAAPVLRDAVHLVSRLGSPSADLRRRLTRAG--RDETVEQFRAGQVVWGVLGLA 116
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G+ P + V V+L G A + V +R+S + + P +L
Sbjct: 117 AGLTLALLLAATRGTPPVVLVVLVVLCAVTGVLARDWALGRQVAQRESRMLQEMPTVAEL 176
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + V +G AL RV G L+ E+ T+A+ A + +RT +
Sbjct: 177 LALAVGAGEGATGALERVVRSTRG---ELTAELERTLADARAGAPLTAALDGLADRTGLA 233
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + + + GT + + LR + R E + + + VP++ LPV
Sbjct: 234 ALARFAEGVAVAVERGTPLAEVLRAQAQDVREEVRRDLMETGGRKEVAMMVPVVFLILPV 293
Query: 310 LILVIIGPAILSI 322
+ + P++L +
Sbjct: 294 TVAFAVFPSLLVL 306
>gi|167584965|ref|ZP_02377353.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 325
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 48/318 (15%), Positives = 114/318 (35%), Gaps = 28/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D A I V++ + + + +R +
Sbjct: 1 MDPIFYAFVILLFVAVVLTFEGLYQWWNARHGV-----AAKRIEARIRAMSAGGQVQKER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L A+ ++ L+ +G +S+ L+ + L +P + L
Sbjct: 56 LSILKERMLNEAKPF--DRLLMAMPRVHSLDLLLQQSGM--SWSVAKLVGMSLALPPLAL 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + +LI P + + +R ++R PD D
Sbjct: 112 VALTFTTLPFP------------VAVLIALPTGVLPLLVVMRNRARRMRKLERQLPDVCD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG + A+ V+++ P+ E +T E+++ + A N NR +
Sbjct: 160 MIARALRSGHAFTSAIGMVSDEFSD---PMGGEFRITFDEINYGVSLHDALMNLANRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + + R + + + S +++ ++ LP
Sbjct: 217 RDLRYFVIAVLIQRETGGNLAELLDSIAALIRERFKLFDKIRVLSAEGRMSA-WVLGLLP 275
Query: 309 VL---ILVIIGPAILSII 323
++++ P L+++
Sbjct: 276 FATAGAMMVLNPEFLAVL 293
>gi|159901126|ref|YP_001547373.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159894165|gb|ABX07245.1| type II secretion system protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 329
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 105/312 (33%), Gaps = 27/312 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + A+ +F+ + E + SV ++ + +
Sbjct: 9 IPLIIALVLFAAGAIIF-----RKLKETKSNSVDGRLATFAERNRSQTDSNERGMSALAS 63
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
S+ N +K ++ L A + ++ ++ + I+F + G+
Sbjct: 64 RVDSMVNRGQK--------GSDLARDLAQADL--KLTVTEFIMFKFGSVILFALFGVFL- 112
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F V ++ +GF P +S R + D + LL +
Sbjct: 113 ------GRANFLAVVAGGVVGAIIGFIVPDKVVSFKQGSRLKAFNNQLGDTVGLLANSLR 166
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG S+ Q++ V+ P+S E + E+ + + N R D +
Sbjct: 167 SGYSLLQSMDLVSR---EAPPPISVEFRRVVQEVGLGLSLEDGMNNLLRRVPSDDLDLMV 223
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPVLILV 313
A+ G ++ + L + R ++ + + + + + ++ F +I+
Sbjct: 224 SAINIQAEVGGNLAEILDTIAHTIRERVRIKGQIRVLTSQARYSGYVVTFLPISIAVIIT 283
Query: 314 IIGPAILSIIDT 325
++ P ++ + T
Sbjct: 284 MLNPDYMAPLMT 295
>gi|171921006|gb|ACB59189.1| TadC [Actinobacillus suis ATCC 33415]
Length = 281
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I + + L+ + ++ + PS+ I +++ + I P +D
Sbjct: 84 MLVIALLTLINYLISEDQTTFLLGCAVVVVLAIMLPSITIGIILKSKIKRIMNDIPGFID 143
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + V++GISI+ A ++VA D + L+ +L + + + A ++
Sbjct: 144 LVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIMRKAEL-TSLSAALQDMAISLPT 202
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R + QS +G+S+ + L L ++ R +L+ E+K +L K+++P+I+F +
Sbjct: 203 KEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMF 262
Query: 309 VLILVIIGPAILSII 323
+I++I+ P + ++
Sbjct: 263 PIIILIVAPGAMRVL 277
>gi|107028241|ref|YP_625336.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|105897405|gb|ABF80363.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
Length = 325
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 47/308 (15%), Positives = 99/308 (32%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+A I T V++ I + R +R +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGAAARRIE-----SRIRAMSAGGNVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + ++ +G +
Sbjct: 56 LSILKKRMLDESKPF--DRLLLRLPRVHALDLVIQQSGLDWTLPK-------------LI 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + + + ++ AV + G+ P ++ KR ++R PD D
Sbjct: 101 TLSATFAALAWFVASFARLPQLAAVPVALVAGW-LPMTYVLRCRAKRMRKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S L V ++ S P+ E +T E+++ + A N R +
Sbjct: 160 MIARALRSGHSFTSTLGMVGDEF---SEPMGGEFRVTFDEVNYGVSLHDALTNLATRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 217 QDLRYFVIAVLIQRETGGNLAELLESIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAAVMA 283
>gi|165975969|ref|YP_001651562.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|190149860|ref|YP_001968385.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251577|ref|ZP_07337751.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|303252182|ref|ZP_07338350.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307245407|ref|ZP_07527495.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247522|ref|ZP_07529567.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249754|ref|ZP_07531732.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252110|ref|ZP_07534009.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307254362|ref|ZP_07536200.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256569|ref|ZP_07538350.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258820|ref|ZP_07540552.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260999|ref|ZP_07542681.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307263184|ref|ZP_07544805.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|165876070|gb|ABY69118.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|189914991|gb|ACE61243.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302648965|gb|EFL79153.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|302649575|gb|EFL79757.1| tight adherence protein C [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853748|gb|EFM85965.1| hypothetical protein appser1_6120 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856025|gb|EFM88183.1| hypothetical protein appser2_5180 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306858169|gb|EFM90247.1| hypothetical protein appser4_5560 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860410|gb|EFM92424.1| hypothetical protein appser6_6280 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306862661|gb|EFM94617.1| hypothetical protein appser9_6100 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306864979|gb|EFM96881.1| hypothetical protein appser10_5740 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867171|gb|EFM99027.1| hypothetical protein appser11_6180 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869301|gb|EFN01096.1| hypothetical protein appser12_5660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871546|gb|EFN03269.1| hypothetical protein appser13_6060 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 281
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I + + ++ + ++ + PS+ I +++ + I P +D
Sbjct: 84 LLVIALLTLINYIVSDDQTTFLLGCAVVVVLAIMFPSITIGVILKSKIKRIMNDIPGFID 143
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + V++GISI+ A ++VA D + L+ +L I + + A ++
Sbjct: 144 LVAVNVQTGISIEAAFKQVAIDFEHLNADLTYVILRIIRKAEL-TSLSAALQDMAISLPT 202
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R + QS +G+S+ + L L ++ R +L+ E+K +L K+++P+I+F +
Sbjct: 203 KEIRMFCTVMQQSLNFGSSLYEHLTQLSADIREMQLLVMEEKLGTLSAKMSIPLILFIMF 262
Query: 309 VLILVIIGPAILSII 323
+I++I+ P + ++
Sbjct: 263 PIIILIVAPGAMRVL 277
>gi|332382440|gb|AEE67287.1| hypothetical protein BPTD_1970 [Bordetella pertussis CS]
Length = 328
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 114/301 (37%), Gaps = 2/301 (0%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
V + ++R ++V R + + + + + ++
Sbjct: 25 CAVVGAALVARAGRQQRSRAVVDRALAARDGHVAEPPPAGRMAAVASAAEHAGAK-LEHG 83
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L L+ + + A GFR+ ++ ++ L + + + P
Sbjct: 84 KLGDSLLASDDRKLIDACGFRNPARARAWFMLARLLLAGLAPLAAWLVL-RARHADLPLA 142
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
AV L +G+ P + + +R+ + P +DLL + G+S+DQ++ +
Sbjct: 143 YVACAVFLGFGLGWMVPKWMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVL 202
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+D L E+ + + + R+ + D + + ++Q DR+G +
Sbjct: 203 IQDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGA 262
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ D L R R +E + + A L K+T M++ LP L+++ G ++++ M
Sbjct: 263 VQDPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVALLRGMS 322
Query: 328 D 328
Sbjct: 323 Q 323
>gi|77919351|ref|YP_357166.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
gi|77545434|gb|ABA88996.1| Flp pilus assembly protein TadB [Pelobacter carbinolicus DSM 2380]
Length = 325
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 54/319 (16%), Positives = 111/319 (34%), Gaps = 26/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + + T + S++ + + S EK K++ + +K
Sbjct: 1 MDLLDTLIMATVFLFTTSVVALLFMAWSESRFAEK--KAIKKRLLYISAGGKHGREKLLN 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R++ +++ + + L +G S+
Sbjct: 59 YRDKVLRNAGTVQKLA-----LKMPRVSTLDRMLLKSGLPFNASV--------------F 99
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + LL F I + + FC P ++ + + P+ALD
Sbjct: 100 VLLSLSLGLIALLLGLKFIPYTFITIALAILIFCLPFAYLKLAENTYHARFQDQLPEALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + SG ++ L VA ++ P+S E + E++ Q AFEN R
Sbjct: 160 LLARALRSGHAMTSGLEMVAAEMD---PPISSEFGAAVDEINLGLTFQEAFENLCERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R ++I G ++ + L + R + + KA + +L+ ++I
Sbjct: 217 TDLRFFAISVIIQRETGGNVAEILDSISRLIRERIQFKRQVKALTAEGRLSAMVLIGLPI 276
Query: 309 VLI--LVIIGPAILSIIDT 325
L + + LS++ T
Sbjct: 277 ALFGYIFFVNHQYLSLLWT 295
>gi|307133501|dbj|BAJ19013.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I L+L ++ + + I V P V I ++++ + I
Sbjct: 84 VKLLIMLLLFGVYYLYSLTDEATDSSSLLLGFLTILIVTIVVPGVLIGSILKAKIKKIMN 143
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+DL+ + V++GISI+ AL++VA D + L+ ML I + A ++
Sbjct: 144 DLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSEI-TGMSQALQD 202
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R + QS +G+SI L L ++ R +L+ E+K +L K+++P
Sbjct: 203 LSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEKLGTLSAKMSIP 262
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+I+F + +I++I+ P ++ +
Sbjct: 263 LILFIMFPIIILILAPGVMRV 283
>gi|289625308|ref|ZP_06458262.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647833|ref|ZP_06479176.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867142|gb|EGH01851.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871030|gb|EGH05739.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 294
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 112/275 (40%), Gaps = 5/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+ + ++ +R LR ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQMLLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ +++ I+ K + P + A + +G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMVVVIVAQLLLFKGVGQP----LIAPVFALGIGYLLPKRILAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
Q+RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 QRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLVRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFIAISRALG 293
>gi|149911402|ref|ZP_01900020.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
gi|149805510|gb|EDM65515.1| hypothetical Flp pilus assembly protein TadB [Moritella sp. PE36]
Length = 321
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 46/316 (14%), Positives = 116/316 (36%), Gaps = 29/316 (9%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
++++ + ++ L I A + I + + ++ +
Sbjct: 1 MSSQVMFLLLVFAAVVLLFQGFFISVYSPQR--------ANSKHIRKHLASLADDDEAQA 52
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
L + +SL F++ + + ++ E S + +L + +
Sbjct: 53 EILINKKVESLPPFLQWIESLPFVYSYT---------YKMELSGSKMLGHQY-------L 96
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + + + L + + + F + ++ + KR I++ +P+ALD+
Sbjct: 97 ILTLVLSLMVAITSWFISLDLVFTVFCVLIMFTLMHLILNRNINKRMERIEQQFPEALDI 156
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L +++G + +++ V E++ G LS+E L ++F + A +F R
Sbjct: 157 LKRGLQAGYAFSDSIKLVYEELEG---ELSDEFKLMFNRINFGNDVHTALLSFVKRVPST 213
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ G ++ +++ L R + K S +L+ +++ V
Sbjct: 214 SAMAFCSSVSIHKETGGNLAENIDNLSRIIRQRFTFKRRVKTLSAEGRLSGWVLVLTPFV 273
Query: 310 LILV--IIGPAILSII 323
L V I P SI+
Sbjct: 274 LFAVLYISSPDYASIL 289
>gi|303248307|ref|ZP_07334569.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
gi|302490332|gb|EFL50244.1| Type II secretion system F domain protein [Desulfovibrio
fructosovorans JJ]
Length = 326
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 109/301 (36%), Gaps = 21/301 (6%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
I ++V + + + +R+ + + R + T ++ + + + +
Sbjct: 14 ILSLVYVFVAAVFVVRRLTDKSGKELARRIEAATRAREAADVPGDLVKRHEMSGLRWLDV 73
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L + L A + P+ +L + + + +
Sbjct: 74 FLSRQAWSRRMDKMLDQADIEA--------------PLGVFVLLSLVLAVTGSMAASIYT 119
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ A + +G P WI+ KR + +R P+ALDL+ + +G + + V
Sbjct: 120 QNLLARLAVGVGLGFLPFKWIAMRKAKRMTEFERQLPEALDLVGRALRAGHTFTSGMGMV 179
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ P+S E T+ E++F VA +N +R + ++ + G +
Sbjct: 180 VSEFAE---PISSEFRTTLEEINFGMGVTVALDNLMDRVDCPDLNFFVISVKIQNETGGN 236
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAILSIID 324
+ + + + S R ++ + S ++ ++ LP + + ++ P L ++
Sbjct: 237 LAEIIGNIASLIRERLKLKGRIRVLSAEGRM-AAWVLCLLPFFVCGAVQVLNPGYLGLLF 295
Query: 325 T 325
T
Sbjct: 296 T 296
>gi|148976657|ref|ZP_01813344.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
gi|145964008|gb|EDK29266.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
Length = 321
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 115/312 (36%), Gaps = 31/312 (9%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ +++ + A+++P+ G K + R ++ + + S L+
Sbjct: 8 LVLLFIAVLFISQALLLPAAGKKAKHKEL--------TRRLKETQRNIDEESLSLLKEHY 59
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+K L F +KL + L D + L AG + S + +
Sbjct: 60 NKELSPFDRKLIVIPFLAD--LKRMLELAGLKITLSR--------------FLFVVFLCG 103
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L+ + + +++ N V R + + P+ALD++ +++
Sbjct: 104 TLLALVALVLNQVWFICVAAFVFAWVVAYLFVQNRVTYRMARFEEQLPEALDIIRRALQA 163
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G I Q+ V E++ P+ E T L++ + ++A R + +
Sbjct: 164 GQPIVQSFNEVGEEMPE---PIGVEFKNTYNLLNYGYDLRLAIMQMTERVPTVSMLAFSS 220
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--- 313
A++ G ++ ++L+ + R+ +E + K S +L+ I+ P ++
Sbjct: 221 AVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESRLSA-WILTLSPFVLFFGLK 279
Query: 314 IIGPAILSIIDT 325
+ P + + +
Sbjct: 280 FVNPEYIEPLYS 291
>gi|197295160|ref|YP_002153701.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944639|emb|CAR57243.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 325
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 96/308 (31%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+A I T V++ I + R +R +
Sbjct: 1 MNAIFYGFVILTFVAVVLSIEGIYQWWNARHGTAARRIE-----SRIRAMSAGGNVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + + ++ +G I
Sbjct: 56 LSILKKRMLDESKPF--DRLLLRLPRVHTLDLVIQQSGLDWTLP----------KLITLS 103
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + P + V + G P +++ +R ++R PD D
Sbjct: 104 ATFAALTWFVASFMRLPQLVAVPLALFAG----WLPMLYVLRCRARRMRKLERQLPDICD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG S L V ++ S P+ E +T E+++ + A N R +
Sbjct: 160 MIARALRSGHSFTSTLGMVGDEF---SEPMGGEFRVTFDEVNYGVSLHDALMNLATRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 217 QDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAAVMA 283
>gi|167566942|ref|ZP_02359858.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis EO147]
gi|167574011|ref|ZP_02366885.1| Flp pilus assembly protein TadB [Burkholderia oklahomensis C6786]
Length = 325
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 51/318 (16%), Positives = 105/318 (33%), Gaps = 28/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + V++ V R +R +
Sbjct: 1 MDPIFYGFIVLLFVAVVLAFEGVYQWWNARHGPAARRIE-----GRIRAMSAGGQVQKER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R R F L + + ++ +G +S+ L + L P
Sbjct: 56 LSILKERMLNDARPF--DRLLMRVPRMRMLDLLIQQSGL--TWSVAKLACISLATPFAAF 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I L + + C P++++ +R ++R PDA D
Sbjct: 112 IALSFA------------PLPLWTSAAVAVTTACLPTLFVRRCRMRRLRKLERQLPDACD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + +G + A+ V + P+ E +T E+++ Q A N R +
Sbjct: 160 MIARALRAGHAFSSAISMVGGEFAE---PMGGEFRITFDEINYGVPLQEALLNLATRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + R + + + S KL+ I+ LP
Sbjct: 217 SDLRYFVIAVLIQRETGGNLAELLDGIALLIRERFKLFDKVRVLSAEGKLSA-WILTLLP 275
Query: 309 V---LILVIIGPAILSII 323
+L I+ P ++++
Sbjct: 276 FGTAALLAIMNPDFIAVL 293
>gi|33152381|ref|NP_873734.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
gi|33148604|gb|AAP96123.1| tight adherence protein C [Haemophilus ducreyi 35000HP]
Length = 290
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 107/234 (45%), Gaps = 7/234 (2%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ L L L + + L++ + F + + +
Sbjct: 60 GKSKQQAELEVLLIQ-----NNPLLRFLSLIDQNVKVKLLVIALLSFINYTINQDELEFM 114
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+G +++ V PS+ ++ +++ + I P +DL+ + V++GISI+ A ++V+
Sbjct: 115 LGEAVVV-VVAIMLPSMIVNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSM 173
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D + L+ +L I + VA ++ +R + QS +G+S+
Sbjct: 174 DFERLNPDLTYVLLRIIRRAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVY 232
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
D+L +L ++ R +L+ E+K +L K++VP+I+F + +I++I+ P + ++
Sbjct: 233 DNLTMLSADIRDMQLLVMEEKLGTLAAKMSVPLILFVMFPIIILIVAPGAMRVL 286
>gi|258651872|ref|YP_003201028.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258555097|gb|ACV78039.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 311
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 55/290 (18%), Positives = 111/290 (38%), Gaps = 10/290 (3%)
Query: 34 PSLGSGELEKRMKS-VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
P L L R+ VA R ++ S RL + FV K+ +
Sbjct: 26 PPLRRPTLSDRIAPYVADAGGQSRLLAGSAPGPRSTLGRLAAPLLRDAVRFVDKI----M 81
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
++ +L A S +++ + ++V + G L + + +
Sbjct: 82 GGRGSVERRLTA--ISSPLTVDQFRIEQVVWGSLGAAAGAGIGLLAVVLGQSNPFILLLL 139
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++ G W++ V K++ I +P ++L + V +G S AL RV +
Sbjct: 140 IVVSAAAGVLGRDWWLTQAVSKQEEEIIAEFPVIAEMLALSVTAGESPTGALDRVTKL-- 197
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PL ++ +AE A + +RT+++ + + + GT + D L
Sbjct: 198 -AHGPLVSQLSGVLAETRAGTPFLTALTHLRDRTRLEPLARFLDGMAVAIERGTPLADVL 256
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R ++ R+ + + + VP++ LP+ IL + P +L+I
Sbjct: 257 RAQAADVRALSKRQLLESGGRKEIAMMVPVVFLVLPITILFALYPGLLAI 306
>gi|225181995|ref|ZP_03735427.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
gi|225167280|gb|EEG76099.1| type II secretion system protein [Dethiobacter alkaliphilus AHT 1]
Length = 319
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/309 (14%), Positives = 112/309 (36%), Gaps = 26/309 (8%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
VSI + + E + + + Q+ ++++ + +
Sbjct: 4 ITVSIVVFFAILFLLRAIGSRSEGKSEDIVNRVRTFSPDQLKDKEEETKAKKSILHVFAG 63
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ ++ ++I +L A + +L + ++ +LG +
Sbjct: 64 VFRIFTTQPIR-----DSIEAELVQADVLLK--PEEMLAINAATALLPALLGYLV----- 111
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
IL+ VG P +++ N KR DAL ++ + +G S
Sbjct: 112 -------TQNFALAILLALVGAVLPLLFLKNAKMKRLQKFNDQLGDALGIMSNSLRAGFS 164
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
QA+ +++++ P+S E + E+ + A N R + D + A+
Sbjct: 165 FLQAMDSLSKEL---PPPISTEFGRALKEMRLGTPTEEALANMTERIRSDDLDLIVTAVN 221
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIG 316
+ G ++ + L + + M+ E K + +++ I+ LPV ++ ++
Sbjct: 222 IQRQVGGNLAEILDNIGNTISERVRMKGEIKTLTAQGRISG-TIVALLPVFLVGVISVMN 280
Query: 317 PAILSIIDT 325
P+ + ++ T
Sbjct: 281 PSYIGLLFT 289
>gi|71733529|ref|YP_276554.1| type II secretion system protein F domain [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257483343|ref|ZP_05637384.1| type II secretion system protein F domain [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298488955|ref|ZP_07006978.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|71554082|gb|AAZ33293.1| type II secretion system protein F domain protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298156453|gb|EFH97550.1| Type II/IV secretion system protein TadC, associated with Flp pilus
assembly [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320322734|gb|EFW78827.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330481|gb|EFW86460.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330887979|gb|EGH20640.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
gi|330989172|gb|EGH87275.1| type II secretion system protein F domain [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012562|gb|EGH92618.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 294
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 113/275 (41%), Gaps = 5/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+ + ++ +R LR ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQMLLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ +++ I+ K +E P + A + +G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMVVVIVAQLLLFKGVEQP----LIAPVFALGIGYLLPKRILAAVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
Q+RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 QRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSLEGKDLLPVLSEEIRVVLVRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL L RL ++ +
Sbjct: 199 LELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFIAISRALG 293
>gi|229588191|ref|YP_002870310.1| hypothetical protein PFLU0643 [Pseudomonas fluorescens SBW25]
gi|229360057|emb|CAY46911.1| putative membrane protein [Pseudomonas fluorescens SBW25]
Length = 298
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 100/244 (40%), Gaps = 4/244 (1%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
L +++ +D L G+R ++ ++ PI+ L L ++ +
Sbjct: 57 ASSLAQRSVSLDNETQALLNRVGWRKSSQRSLFAAFQIGTPIVLLGLTLLGQQLLFPHAD 116
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ A + +G+ P ++ + RQ +I + + LL I ESG++++Q+
Sbjct: 117 PAW----IAPMFALGIGYLLPKRVLAAAAKHRQQAIAKEISTFIPLLRILFESGMAVEQS 172
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
LR + + L+ E+ L +A + + ++D + L Q +
Sbjct: 173 LRVLGNEAQRLLPHLTHELRLILARVDSGLELGEELGKTVHVLEVDEFTDTCIILQQLIQ 232
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G SL L RL ++ + + K++V M++F P L++V+ GPA + I
Sbjct: 233 QGGGAMKSLLALKQLLDDRRLTRLQEYISKMSAKMSVVMMVFLFPALLIVLGGPAFIGIA 292
Query: 324 DTMK 327
+
Sbjct: 293 RALS 296
>gi|157375502|ref|YP_001474102.1| Flp pilus assembly protein TadB [Shewanella sediminis HAW-EB3]
gi|157317876|gb|ABV36974.1| conserved hypothetical Flp pilus assembly protein TadB [Shewanella
sediminis HAW-EB3]
Length = 325
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 116/308 (37%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E+ +++ L A+ +P A+ R+ L++ S +
Sbjct: 1 MPSNEIIFLGLIFLAVILLSQALFLPVYSPQRANT-----ALVRKRLKQLSKNSDDSEFE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S LR + L F + L+ I EN+ +L A ++
Sbjct: 56 TSLLRKSKLQKLNRFGR--ALEKIEFIENLSYRLELADYKMMGHH--------------F 99
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + LL + F + + V + +S KR +I+ ++PDALD
Sbjct: 100 FLLALVTSIITGLLTWQFTREPIITVFVMAVTLMLFHIKLSRDTNKRMDAIEASFPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G S A++ E++ G P+++E L A +++ + + A F R
Sbjct: 160 VVRRALQAGYSFSDAIKLATEELEG---PIAKEFKLMFANINYTKDVKRALLGFIERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R K S +L+ I+ LP
Sbjct: 217 ISAMAFASAVMVQKETGGNLAENIESLSRVIRERFTFRRRVKTLSAEGRLSA-WILILLP 275
Query: 309 VLILVIIG 316
++ +I
Sbjct: 276 FVLFAVIY 283
>gi|13475421|ref|NP_106985.1| hypothetical protein mlr6484 [Mesorhizobium loti MAFF303099]
gi|14026173|dbj|BAB52771.1| mlr6484 [Mesorhizobium loti MAFF303099]
Length = 323
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/321 (16%), Positives = 108/321 (33%), Gaps = 27/321 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + ++ S+I A L R + + L + S
Sbjct: 1 MPTGQTLLYFIYVLAAASVILAAESFFLSIAGRRARAGIINRRLQRLG---EEKPAEQSL 57
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L+ R + +F+ + +G
Sbjct: 58 QGLLQERGLTASGDFI--------FGAITLNRLYTQSGITGN------------PLAFLA 97
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + L + AVI+ VGF P + + + KR PDALD
Sbjct: 98 VFLLAGLVLALLLPLLLHFSIIVAVIVFLIVGFVLPILVLRSARDKRIKKFAVQLPDALD 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++ + +G A+ VA ++ PL E + E+SF + + A R
Sbjct: 158 MIVRSLRAGHPTTVAIALVAREMPD---PLGTEFGIVSDEISFGLSLEQAVRKLSERVGF 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + +L + G ++ + L L S R R + + +A S +++ II P
Sbjct: 215 EGLHLLSVSLSIQAKTGGNLTEILSNLSSVLRERRKLRMKIRALSAEGRMSA-WIISLFP 273
Query: 309 VLILVIIGPAILSIIDTMKDH 329
+L+L ++ A S + +
Sbjct: 274 LLMLGVLSIAAPSFYGDVWGN 294
>gi|21326712|gb|AAL92472.1| TadC [Haemophilus ducreyi]
Length = 281
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/234 (20%), Positives = 107/234 (45%), Gaps = 7/234 (2%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ L L L + + L++ + F + + +
Sbjct: 51 GKSKQQAELEVLLIQ-----NNPLLRFLSLIDQNVKVKLLVIALLSFINYTINQDELEFM 105
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+G +++ V PS+ ++ +++ + I P +DL+ + V++GISI+ A ++V+
Sbjct: 106 LGEAVVV-VVAIMLPSMIVNMIIKSKIKRIMSDLPGFIDLVAVNVQTGISIEAAFKQVSM 164
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
D + L+ +L I + VA ++ +R + QS +G+S+
Sbjct: 165 DFERLNPDLTYVLLRIIRRAEL-TSLNVALQDLAISLPTKEIRMFCTVMQQSLNFGSSVY 223
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
D+L +L ++ R +L+ E+K +L K++VP+I+F + +I++I+ P + ++
Sbjct: 224 DNLTMLSADIRDMQLLVMEEKLGTLAAKMSVPLILFVMFPIIILIVAPGAMRVL 277
>gi|323499917|ref|ZP_08104876.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
gi|323315158|gb|EGA68210.1| Flp pilus assembly protein TadB [Vibrio sinaloensis DSM 21326]
Length = 322
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/294 (17%), Positives = 112/294 (38%), Gaps = 27/294 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
I ++ + A+++P+ GS K++ R + + + A
Sbjct: 1 MQQDATLFYILLFFAVVFISQALILPAAGSKAKHKQLSQ--------RLKDSQANLDEEA 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ KSL ++ L + ++ + +G+ S +
Sbjct: 53 RSLLQEHYMKSLTPMDRR--LVKYELFSSLKKTIELSGYDWSLS----------QTLAVT 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ I F L+ PF + + + I I + + W++ + R S + P+ALD
Sbjct: 101 FILSICAFMVVLLIGQPFYVGIASSIGIWAILYF----WLNKRISDRLSQFEEQLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V ++ P+ E T L+F + ++A RT
Sbjct: 157 IMRRMLQAGQPVTQAFNEVGNEMPD---PIGTEFKNTFNLLNFGYDMRMAIMQMAERTPT 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + A++ G ++ ++L + RS ++ + K S +L+ +
Sbjct: 214 VSMLAFSSAVLLQKETGGNLSENLEKVSRVLRSRFKLQRKIKTLSAESRLSAWI 267
>gi|225375137|ref|ZP_03752358.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
16841]
gi|225213011|gb|EEG95365.1| hypothetical protein ROSEINA2194_00761 [Roseburia inulinivorans DSM
16841]
Length = 415
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ ++ ++R+ ++ +P+ + L I + +G+++ A
Sbjct: 231 PLKLLLLGMIAAGCVPLVEKSRKQEEEKRRKEKLQSEYPELVSKLTILLGAGMTLFSAWN 290
Query: 206 RVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++A + PL EEML+T E+ A+E F R + R L
Sbjct: 291 KIATSYSNKRKNNTIPIHPLYEEMLITCHEIESGVGEARAYERFGERCGLHRYRKFCSLL 350
Query: 259 IQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+Q+ R GT + L VS+ ER A+K G K+ PM++ ++I++I+ P
Sbjct: 351 VQNLRKGTRGLVQLLEQEVSDAFEERKNLAKKSGEEAGTKMLFPMMM-MFGIIIVIIMVP 409
Query: 318 AILSI 322
A LS+
Sbjct: 410 AFLSL 414
>gi|53723518|ref|YP_102952.1| hypothetical protein BMA1286 [Burkholderia mallei ATCC 23344]
gi|76808991|ref|YP_333345.1| hypothetical protein BURPS1710b_1946 [Burkholderia pseudomallei
1710b]
gi|121599511|ref|YP_993094.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124383879|ref|YP_001026129.1| hypothetical protein BMA10229_A0121 [Burkholderia mallei NCTC
10229]
gi|126450979|ref|YP_001080599.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|126452133|ref|YP_001066062.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242317541|ref|ZP_04816557.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254178228|ref|ZP_04884883.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254206225|ref|ZP_04912577.1| type II secretion system protein [Burkholderia mallei JHU]
gi|254261112|ref|ZP_04952166.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254297789|ref|ZP_04965242.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52426941|gb|AAU47534.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
gi|76578444|gb|ABA47919.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
gi|121228321|gb|ABM50839.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124291899|gb|ABN01168.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126225775|gb|ABN89315.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|126243849|gb|ABO06942.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|147753668|gb|EDK60733.1| type II secretion system protein [Burkholderia mallei JHU]
gi|157807302|gb|EDO84472.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|160699267|gb|EDP89237.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|242140780|gb|EES27182.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254219801|gb|EET09185.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 336
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 56/322 (17%), Positives = 115/322 (35%), Gaps = 15/322 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK---------QQITSLQ 64
+ V + A++I + A + L++R ++ + +
Sbjct: 16 IGVLMLAALAIMQAVLARRTGRTLADALDQRAAALEAAAARVAAGAAGAARAGMPEAAPD 75
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + L +V + L G+ ++ I L R+
Sbjct: 76 ARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACA 135
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I + + + V L GF P ++ R+ S+ P
Sbjct: 136 IALPAAVALVGGEPVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQSVVDEMP 189
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 190 LLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLAT 249
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+
Sbjct: 250 SFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMIL 309
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
LP L +V GP +L++ +
Sbjct: 310 TLLPALFIVTAGPGMLAVTHAL 331
>gi|86739494|ref|YP_479894.1| type II secretion system protein [Frankia sp. CcI3]
gi|86566356|gb|ABD10165.1| type II secretion system protein [Frankia sp. CcI3]
Length = 316
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/315 (15%), Positives = 99/315 (31%), Gaps = 7/315 (2%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
I V + +I P L R+ + + +
Sbjct: 1 MTTVASGALIGFLVGLGLVIIVYRSPRARRIHLADRIDPYLRDTPTPSRLLDDRPRGVPR 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILV-DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L L + +L AG R+ S+ V +++
Sbjct: 61 PGLAAVEALARPLLADAAGRLDRFLGGRAALQRRLTQAGGRT--SIEEFRVQQVICAASG 118
Query: 128 LILGIIWIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++G + L P + V ++ G A W+S + +R+ + +P
Sbjct: 119 ALIGAFLLALRALLGVGPPALVSVALIVAGTAGGVVARDYWLSRAISEREDRMLLEFPTI 178
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+LL + V +G + A+ + L E+ L +A+ A E RT
Sbjct: 179 AELLALAVTAG---ESAIGALERVSRLTHGELGRELRLALADARAGATLVQALEGIAART 235
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + + GT + D LR + R + + + +P++
Sbjct: 236 ALAPLVRFVDGMAVAIERGTPLADILRAQAVDAREAGKRQLLEAGGRKEIAMMIPVVFLV 295
Query: 307 LPVLILVIIGPAILS 321
LP ++ PA++S
Sbjct: 296 LPTTVIFAFYPALVS 310
>gi|254229336|ref|ZP_04922753.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262393423|ref|YP_003285277.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
gi|151938144|gb|EDN56985.1| bacterial type II secretion system protein F domain [Vibrio sp.
Ex25]
gi|262337017|gb|ACY50812.1| flp pilus assembly protein TadB [Vibrio sp. Ex25]
Length = 322
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/283 (17%), Positives = 107/283 (37%), Gaps = 23/283 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
K V ++ I R + + S LR K+L + L + +N KL A
Sbjct: 30 KKVKHKQLIKRIHESHKHIDQESISLLRENSLKNLSPLERW--LVRFSLFDNFKKKLELA 87
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G +S I L + + +++F + ++ + + +
Sbjct: 88 GIHMGFSRFIFL------TFLGGVAVGLFLFLFGQV--------WYLCAGVAVACWVSVY 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + R + P+ALD++ +++G I QA E S PL E + T
Sbjct: 134 FYLQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQAF---GEVGREVSAPLGPEFMNT 190
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L++ + ++A RT + + A++ G ++ +++ L R+ +
Sbjct: 191 FNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKL 250
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ K S +++ ++ P + VII P + ++ T
Sbjct: 251 ARKIKTISAESRMSA-WVLVLAPFGLYVIISLVRPEYIELLHT 292
>gi|295395665|ref|ZP_06805857.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971481|gb|EFG47364.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 297
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/277 (16%), Positives = 96/277 (34%), Gaps = 14/277 (5%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R ++ R + + R L + +L +L
Sbjct: 26 RTDPLSSLSPEDRALIKDETRLKRRADGPVKRLGARLGPSLGRLFGGKYPSWVESKIQLT 85
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
+ +FL+ + + + + +G
Sbjct: 86 -----DKKQYQDFTGFMAFKGSVFLLCAA------GGVSIFLVTKAPLILFIFIAIGLLF 134
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + +KRQ +I+ + PD LD+L + V +G+S A+ A+ PL++E+
Sbjct: 135 PDFALIQSGRKRQEAIEDSLPDFLDVLAVTVSAGLSFRSAI---AKVTERTQGPLADELN 191
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ +L+ AF RT + + + L+Q++ G + D+L + + R
Sbjct: 192 TVLHQLNMGETVYDAFSALRKRTTSESLDSFITTLLQAEELGAPLADTLATIALDMRQTT 251
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
A +KAA PK+ + I +P + +I+
Sbjct: 252 AQRARQKAAKASPKIAGVVTIIMVPGTMALIMVSVYF 288
>gi|52425830|ref|YP_088967.1| hypothetical protein MS1775 [Mannheimia succiniciproducens MBEL55E]
gi|52307882|gb|AAU38382.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 292
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 4/201 (1%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V I LIL I+ A +I + P + +++++ ++
Sbjct: 92 VKLFITLILTGIYALFNLDAERKSL---AIAGAVIFVLVILIPGSLANMILKRKIKNMMT 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P +DL+ ICV++G++I+ AL RVAED + LS ML I + A +
Sbjct: 149 DLPGFVDLVAICVQTGMTINAALLRVAEDFKILNPDLSYVMLRIIRKAEI-IGLPSALDT 207
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R T L QS +G+SI L L S+ R +L+ E++ +L K++VP
Sbjct: 208 LAVSLPTREIRMFTTVLQQSLNFGSSIYSHLLQLSSDMRELQLLTIEEQLGTLSAKMSVP 267
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+I+F + +I++I+ P ++ +
Sbjct: 268 LILFIMFPIIILIVAPGVMRV 288
>gi|251767749|ref|ZP_02268267.2| type II secretion system protein [Burkholderia mallei PRL-20]
gi|254188637|ref|ZP_04895148.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|157936316|gb|EDO91986.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|243061818|gb|EES44004.1| type II secretion system protein [Burkholderia mallei PRL-20]
Length = 339
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 56/322 (17%), Positives = 115/322 (35%), Gaps = 15/322 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK---------QQITSLQ 64
+ V + A++I + A + L++R ++ + +
Sbjct: 19 IGVLMLAALAIMQAVLARRTGRTLADALDQRAAALEAAAARVAAGAAGAARAGMPEAAPD 78
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + L +V + L G+ ++ I L R+
Sbjct: 79 ARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACA 138
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I + + + V L GF P ++ R+ S+ P
Sbjct: 139 IALPAAVALVGGEPVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQSVVDEMP 192
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 193 LLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLAT 252
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+
Sbjct: 253 SFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMIL 312
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
LP L +V GP +L++ +
Sbjct: 313 TLLPALFIVTAGPGMLAVTHAL 334
>gi|217423679|ref|ZP_03455180.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|217393537|gb|EEC33558.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 336
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/322 (17%), Positives = 116/322 (36%), Gaps = 15/322 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK---------QQITSLQ 64
+ V + A++I + + + L++R ++ + +
Sbjct: 16 IGVLMLAALAIMQAVLSRRTGRTLADALDQRAAALEAAAARVAAGAAGAARAGMPEAAPD 75
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + L +V + L G+ ++ I L R+
Sbjct: 76 ARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIACA 135
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I + + + V L GF P +++ R+ S+ P
Sbjct: 136 IALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKIYVRRRAAARRQSVVDEMP 189
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 190 LLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRLAT 249
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +R + LIQ D++G ++ + L+ R R ++ L K+T MI+
Sbjct: 250 SFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVMIL 309
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
LP L +V GP +L++ +
Sbjct: 310 TLLPALFIVTAGPGMLAVTHAL 331
>gi|260776711|ref|ZP_05885606.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607934|gb|EEX34199.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 322
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/319 (17%), Positives = 123/319 (38%), Gaps = 29/319 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
I ++ + A+++P+ GS K + R ++ S + A
Sbjct: 1 MHQDATFFFILLFFAVVFISQALILPAAGSKAKHKELSE--------RLKESQSKLDEEA 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ KSL +K L V ++ + +G+ ++SL L V ++ +
Sbjct: 53 LSLLQEHYLKSLTPLDRK--LVRFEVFSSLKKMIELSGY--DWSLTQTLTVTSILSVCGF 108
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++ L + W+S + R S+ + P+ALD
Sbjct: 109 FIVLLISQPVYVALAVVVAIWAFL------------YFWLSKKISDRLSAFEGQLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V E++ P+ E T L++ + ++A RT
Sbjct: 157 IMRRMLQAGQPVTQAFSEVGEEM---PAPIGVEFKNTFNLLNYGYDMRMAIMQMAERTPT 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--F 306
+ + A++ G ++ ++L + R+ ++ + K S +L+ +++ F
Sbjct: 214 VSMLAFSSAVLLQKETGGNLSENLEKVSRVLRARFKLQRKIKTLSAESRLSAWILVLSPF 273
Query: 307 LPVLILVIIGPAILSIIDT 325
+ L L + P + + T
Sbjct: 274 VLFLFLSFVNPGYVEPLYT 292
>gi|293391327|ref|ZP_06635661.1| Flp pilus assembly protein TadC [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951861|gb|EFE01980.1| Flp pilus assembly protein TadC [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 288
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/308 (16%), Positives = 117/308 (37%), Gaps = 29/308 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ +++F ++ + + + + R + + ER + + K L
Sbjct: 5 LLLSYALLTVFG-VFVLFLALSARRKFQHRKEVITGERPKDQSNDEIAKGKSKQQIELEL 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L+ G + V +I ++L ++
Sbjct: 64 LLINNNP-------------------ILKMLGIIDKN--------IKVKLLIMILLCGVY 96
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + I V P + I ++++ + I +DL+ + +
Sbjct: 97 YLYSLIDKTTDSSSLLFGFLTILIVTIVIPGILIGSILKSKIKKIMNDLAGFIDLVAVNL 156
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G+ I+ AL+ VA D + L+ ML I + A ++ +R
Sbjct: 157 QTGMGIEAALKHVATDFKILNPDLTYVMLRIIRKSEI-TGMSQALQDLSVSLPTAEIRMF 215
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ QS +G+SI L L ++ R +L+ E+K +L K++VP+I+F + +I++I
Sbjct: 216 CTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEKLGTLSAKMSVPLILFIMFPIIILI 275
Query: 315 IGPAILSI 322
+ P ++ +
Sbjct: 276 LAPGVMRV 283
>gi|291451546|ref|ZP_06590936.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354495|gb|EFE81397.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 296
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L + ++ AG +L+ R V + L+LG++++
Sbjct: 64 LRLMGPRRVDAKRRRIDMAGNPGGLTLDRYAARRFVYGVFGLVLGLVFLTNDST------ 117
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+L G A I V+ R+ I R PD LD+L + V SG+ QAL R
Sbjct: 118 ----LFALLTFAFGLTAADALIWQAVRDRREVIDRTLPDFLDVLAVVVSSGLGFRQALDR 173
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VAE G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+
Sbjct: 174 VAERYEG---PWADELRITLRQMDMGVSRRQAFDELRRRNSSEQVAQFVSALQQGEELGS 230
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I D+L + ++ R + ++AA PK T+ ++F LP +++I L
Sbjct: 231 PIADTLIQIATDMRRTDAQNSRRRAAKTIPKATMVTLVFLLPATMILIAAGMFLG 285
>gi|32452628|gb|AAP43990.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 92/201 (45%), Gaps = 1/201 (0%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I ++L ++ + + I V P + I ++++ + I
Sbjct: 84 VKLLIMILLCGVYYLYSLIDKTTDSSSLLFGFLTILIVTIVIPGILIGSILKSKIKKIMN 143
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+DL+ + +++G+ I+ AL+ VA D + L+ ML I + A ++
Sbjct: 144 DLAGFIDLVAVNLQTGMGIEAALKHVATDFKILNPDLTYVMLRIIRKSEI-TGMSQALQD 202
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R + QS +G+SI L L ++ R +L+ E+K +L K++VP
Sbjct: 203 LSVSLPTAEIRMFCTVMQQSLNFGSSIYHQLVQLSTDIREIQLLAIEEKLGTLSAKMSVP 262
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+I+F + +I++I+ P ++ +
Sbjct: 263 LILFIMFPIIILILAPGVMRV 283
>gi|99082190|ref|YP_614344.1| type II secretion system protein [Ruegeria sp. TM1040]
gi|99038470|gb|ABF65082.1| hypothetical protein TM1040_2350 [Ruegeria sp. TM1040]
Length = 322
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/302 (13%), Positives = 104/302 (34%), Gaps = 28/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + + G S+ + ++ +LR
Sbjct: 8 LIYGLIFIGVLVLVEGIYLVAFGKS------ISLNSRVNRRLEMLEKGGNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L++ L + + ++L++ + L
Sbjct: 62 EMQQHLKSQSIPLYSLLAEKA--------------QKAAIAFTPIQLILVMCGLTGVAFI 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
P ++ +I +G V F W+++ +KR + I+ PD ++L++ +
Sbjct: 108 GLSVGTQAALPVRVLGSVIIGVGAVFF-----WVNSKAKKRMAKIEEQLPDGVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL+ E + E ++ + A + R M +R
Sbjct: 163 RVGHPFSSAVQIVAKEVED---PLATEFGIIADECAYGRDVGEALKEMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + + + + F ++
Sbjct: 220 AVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGFPLFVLAGT 279
Query: 315 IG 316
+
Sbjct: 280 LV 281
>gi|254179954|ref|ZP_04886553.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|184210494|gb|EDU07537.1| type II secretion system protein [Burkholderia pseudomallei 1655]
Length = 340
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 73 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 132
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P +++ R+
Sbjct: 133 SARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKIYVRRRAAARRQ 186
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 187 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 246
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 247 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 306
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 307 MTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|225572862|ref|ZP_03781617.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
10507]
gi|225039788|gb|EEG50034.1| hypothetical protein RUMHYD_01053 [Blautia hydrogenotrophica DSM
10507]
Length = 337
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/311 (16%), Positives = 117/311 (37%), Gaps = 20/311 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ V++ + +++ + +R + RE L +Q + D T
Sbjct: 36 LFFLVAVGGNLLGIILSVENN---RERQVPKVMHREELGYEQELVVCVDGGEESRLTVQI 92
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFR---SEYSLNILLVVRLVVPIIFLILGIIW 134
N ++ + + ++ +++ R + + + +
Sbjct: 93 PEKENQQEEEGPEEAKQELSLEQQVQDEILRFNQEKNDPENYYLPQTLNG---------R 143
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ +Y + V N +KR+ + +P + + +
Sbjct: 144 SLQWGIPEDYTGTFMSSMCLGAAAVLLVFREREKENSRKKREEELIMDYPGLVTKFTLLI 203
Query: 195 ESGISIDQALRRVAEDIGGQSVPLS---EEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++G+S+ A ++++ED ++ EE+ T E+ +++ A++NF R
Sbjct: 204 QAGMSVRGAFQKISEDCETKTKDRRPGYEEVRRTCIEMDSGVSQKEAYQNFGQRCAQAKY 263
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + L+Q+ R G ++ D L +E ER A + KL VPMI+ L V+
Sbjct: 264 KTFSTLLVQNLRSGNRNLVDMLERESTEAWEERKRRARIHGETAATKLLVPMIL-MLGVV 322
Query: 311 ILVIIGPAILS 321
+ +++ PA LS
Sbjct: 323 LALLMIPACLS 333
>gi|167842455|ref|ZP_02469139.1| Flp pilus assembly protein TadB [Burkholderia thailandensis MSMB43]
Length = 325
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/294 (15%), Positives = 106/294 (36%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F L +
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF--DRLLMRM 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + + +G +S+ L + L +P + L +
Sbjct: 78 PRVQTLDLLIEQSGL--TWSVVKLAWISLAIPFAAFVALSFA------------PLPLWV 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+ C P++++ + +R ++R PD D + + +G + A+ V +
Sbjct: 124 AAVASVATICLPTLFVLHCRTRRLRKLERQLPDTCDTIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVPLQEALLNLATRVPVPDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L ++ P ++++
Sbjct: 241 DGIALLIRERFKLFDKVRVLSAEGKLSA-LILTLLPFGTAGLLSVMNPDFIAVL 293
>gi|226196329|ref|ZP_03791911.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|225931546|gb|EEH27551.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 338
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 117/324 (36%), Gaps = 17/324 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL--------QK 65
+ V + A++I + A + L++R ++ + +
Sbjct: 16 IGVLMLAALAIMQAVLARRTGRTLADALDQRAAALEAAAARVAAGAGAAGAARAGMPEAA 75
Query: 66 DSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
A F +L L +V + L G+ ++ I L R+
Sbjct: 76 PDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIA 135
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
I + + + V L GF P ++ R+ S+
Sbjct: 136 CAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQSVVDE 189
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 190 MPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRL 249
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +R + LIQ D++G ++ + L+ R R ++ L K+T M
Sbjct: 250 ATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVM 309
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
I+ LP L +V GP +L++ +
Sbjct: 310 ILTLLPALFIVTAGPGMLAVTHAL 333
>gi|309810746|ref|ZP_07704553.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
gi|308435283|gb|EFP59108.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
Length = 295
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 103/301 (34%), Gaps = 14/301 (4%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
++ + + + +G R+ + E + + + ++ L
Sbjct: 5 AALSAAAIGLGLALVGIWVARPRVSVLEQRLEAMLAVDSPAAAPRRGLDAVAAALARLLG 64
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ +++ +++ AG + ++ + + + +
Sbjct: 65 RVLG--------GADHVRSRMERAGLVPD--VDTFRTSQALWAMTGFAGAACIVLVTGNS 114
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
P V+L G ++ L ++R++ + +P D+L + V +G
Sbjct: 115 TRGPLSASAL-VLLAAGFGVVLRDQQLTRLAERREARMIVEFPAIADMLALAVAAGQGPL 173
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
AL V G PL+EE+ + + A RT + V + +I +
Sbjct: 174 GALEHVTTLCRG---PLAEELRTALEQARAGTPLSDALAGVARRTSVVSVARFVEGVIVA 230
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
GT + D LR + R E +KA + P++ LPV +L + P + +
Sbjct: 231 LERGTPLADVLRAQAQDARESVRTELVEKAGRKEVVMMAPVVFLVLPVTVLFAVYPGLAA 290
Query: 322 I 322
+
Sbjct: 291 L 291
>gi|28871970|ref|NP_794589.1| hypothetical protein PSPTO_4855 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968012|ref|ZP_03396158.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|301383672|ref|ZP_07232090.1| hypothetical protein PsyrptM_13608 [Pseudomonas syringae pv. tomato
Max13]
gi|302059959|ref|ZP_07251500.1| hypothetical protein PsyrptK_08205 [Pseudomonas syringae pv. tomato
K40]
gi|302131625|ref|ZP_07257615.1| hypothetical protein PsyrptN_09542 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28855223|gb|AAO58284.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213927355|gb|EEB60904.1| membrane protein [Pseudomonas syringae pv. tomato T1]
gi|331014704|gb|EGH94760.1| hypothetical protein PLA106_02330 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 294
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 126/310 (40%), Gaps = 19/310 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +F+ +++ + +R+ + + +++R+ +I SL +
Sbjct: 3 LVLGTFMFAAAVFLLLSGMARQRRNERLVAQRLRGQVVRESRIGSLLRLLGD-------- 54
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ ++I +D L G+R ++ ++ VPI + + I+
Sbjct: 55 -------TRIGQRSISLDSETQVLLNRIGWRRATKRSLFAACQVGVPIALMSMVILAQVL 107
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ K +E PF A I +G+ P ++ Q+RQ + + LL I ESG
Sbjct: 108 FFKDIEQPF----IAPIFALGIGYLLPKRVLAAAAQRRQKKVVVEISTFIPLLRILFESG 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++++QALR ++ + LS+E+ + + + +D + +
Sbjct: 164 MAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVI 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L Q G SL L RL ++ + L K++V M++F P L++V+ GP
Sbjct: 224 LNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGP 283
Query: 318 AILSIIDTMK 327
++I +
Sbjct: 284 GFIAISRALG 293
>gi|53719505|ref|YP_108491.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
gi|52209919|emb|CAH35891.1| putative outer-membrane protein [Burkholderia pseudomallei K96243]
Length = 341
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 117/324 (36%), Gaps = 17/324 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSL--------QK 65
+ V + A++I + A + L++R ++ + +
Sbjct: 19 IGVLMLAALAIMQAVLARRTGRTLADALDQRAAALEAAAARVAAGAGAAGAARAGMPEAA 78
Query: 66 DSASSRLRTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
A F +L L +V + L G+ ++ I L R+
Sbjct: 79 PDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFLSARIA 138
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
I + + + V L GF P ++ R+ S+
Sbjct: 139 CAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQSVVDE 192
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P +D+L + G+S+DQ+++ V D G LS E+ + + R+ + +
Sbjct: 193 MPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQSLQRL 252
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +R + LIQ D++G ++ + L+ R R ++ L K+T M
Sbjct: 253 ATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVKMTGVM 312
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
I+ LP L +V GP +L++ +
Sbjct: 313 ILTLLPALFIVTAGPGMLAVTHAL 336
>gi|328953759|ref|YP_004371093.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328454083|gb|AEB09912.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 339
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/302 (16%), Positives = 112/302 (37%), Gaps = 26/302 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + I L+ + G +S + + R + I L+++S++ L
Sbjct: 22 LFPVAIFLCILFLMEGLYHSFAGR-------RSQSEKHIQQRLKFIEGLERNSSAESLIK 74
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + K+L + + N+ L A + S L I+ + +
Sbjct: 75 EGMLAPESRWKRL-VAKVGRFFNLDELLLQADISWKASTV------LGSSILAGLGAGAY 127
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
F L L + +L P+V++ + R ++ P+AL L+ +
Sbjct: 128 GFLQSGPLGGLGGLFLVGYLL--------PNVFLHMKKKYRLKKFEKQLPEALGLMARSL 179
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G S ++ VA+++ P+ E T E ++ + A N R + ++
Sbjct: 180 KAGHSFPSTMQLVADEMPN---PIGIEFFKTFKEFNYGLDMSSALANLQKRIDLQDLKFF 236
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ G ++ + L + S R + KA + + + +I+ LP + +I
Sbjct: 237 VTAINIQRETGGNLVEILEKIASLIRDRFKLVNHIKAITSEGRFSG-LILTCLPPGMAII 295
Query: 315 IG 316
+
Sbjct: 296 LY 297
>gi|332162959|ref|YP_004299536.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667189|gb|ADZ43833.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 274
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 3/211 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L+ ++ ++L++ + LI+ I L + + V +I + P V + N+V
Sbjct: 64 LHNIIYLKLIIAVTILIITAILATF--DLFSINLKNILVMVTIILIMTLYFPKVIVKNIV 121
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
KR S+ R+ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 122 AKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTRRAEIN 181
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + F + +R AL S +G ++ + L L + R +L+ E+K +
Sbjct: 182 -GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTEEKIS 240
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L KLT+P+ +F L I+++I P++L +I
Sbjct: 241 KLTAKLTIPLFLFILIPFIVLVISPSVLELI 271
>gi|33600815|ref|NP_888375.1| hypothetical protein BB1830 [Bordetella bronchiseptica RB50]
gi|33568415|emb|CAE32327.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 328
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 2/301 (0%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
V + + ++R ++V R + + + + + ++
Sbjct: 25 CAVVGVALVARAGRQQRSRAVVDRALAARDGHVAEPPPAGRMAAVASAAEHAGAK-LEHG 83
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L L+ + + A GFR+ ++ ++ L + + E P
Sbjct: 84 KLGDSLLAIDDRKLIDACGFRNPARARAWFMLARLLLAGLAPLAAWLVL-RARHAEMPLA 142
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
AV L +G+ P + + +R+ + P +DLL + G+S+DQ++ +
Sbjct: 143 YVACAVFLGFGLGWMVPKWMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVL 202
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+D L E+ + + + R+ + D + + ++Q DR+G +
Sbjct: 203 IQDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQGFDNDDLSAICRLIVQVDRHGGA 262
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ D L R R +E + + A L K+T M++ LP L+++ G ++++ M
Sbjct: 263 VQDPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVALLRGMS 322
Query: 328 D 328
Sbjct: 323 Q 323
>gi|84501672|ref|ZP_00999844.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
gi|84390293|gb|EAQ02852.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola batsensis HTCC2597]
Length = 322
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 121/319 (37%), Gaps = 29/319 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ E + I V + +L+ + + + G S+ + S ++
Sbjct: 4 SPEPIIFIVIFVGVLALVEGIYLVAFGKS------ISLNKRVNRRLEMLDKSGNREEVLE 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+LR + + +K+ L ++L D+ + + +LV+ + L
Sbjct: 58 KLRKEMQQHM--TAQKVPLYSLLADKA------------QKAAIAFSPKQLVMLMFGLSF 103
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
P + + I +G + F W+++ +KR S I+ PDA++L+
Sbjct: 104 VAFSGLTILTDTSLPLRAVLSTAIGVGAIYF-----WVNSKAKKRMSLIEEQLPDAVELM 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G A++ V+ ++ PL E + E ++ + A ++ R +
Sbjct: 159 VRSLRVGHPFSSAIQIVSREVAD---PLGSEFGIIADENAYGRDMGEALKDLAERIGLQD 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R A+ + G ++ + L L + R+ + KA + + + M + P++
Sbjct: 216 LRFLAVAVTIQQQSGGNLAEILAGLANVIRARFRLFRRVKAITAEAQWSG-MFLSAFPIV 274
Query: 311 ILVIIGPAILSIIDTMKDH 329
L+ I D + DH
Sbjct: 275 ALIAINVMDPHYYDEVMDH 293
>gi|23009311|ref|ZP_00050407.1| COG2064: Flp pilus assembly protein TadC [Magnetospirillum
magnetotacticum MS-1]
Length = 195
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 4/195 (2%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + A A+ T ++ + ++ ++ P + + +L KRMK V+ ERE +R+++
Sbjct: 1 MLDDIVNTALAPRTMAAVLTGIAAAATVFTLIQPLIETDQLGKRMKLVSDEREQIRQRER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
L LRT ++ V++ NL L + KL AG+R + L R
Sbjct: 61 ERLNNRV---TLRTEPKAYMKRVVERFNLSRWLGTDTAKIKLTMAGYRGAGAETAFLFFR 117
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
LVVPI+ + + ++F ++L+ P +R G + G++G P V++SN + KRQ+ I+
Sbjct: 118 LVVPIVLTVGALFYLFVL-EVLDQPPLIRFGLSLFAGFIGLKLPEVYLSNRISKRQAEIR 176
Query: 181 RAWPDALDLLLICVE 195
RA PDAL+L LICVE
Sbjct: 177 RAGPDALELWLICVE 191
>gi|288919650|ref|ZP_06413978.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288348939|gb|EFC83188.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 367
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 100/276 (36%), Gaps = 6/276 (2%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
+ R ++ + + + + + + +L AG
Sbjct: 91 AAGSRRGAHGRRAAGAETRILVGLGTVEALLRPFIADAAGRLDRFLGGRTALTRRLVQAG 150
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGI-IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
R+ ++ V +++ ++ +LG + + P + V V+ G A
Sbjct: 151 GRT--TIEEFRVQQVITAVVGALLGASVLALRTLLGIGPPALVGVALVVAGTAGGILARD 208
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W++ +++R+ + +P +LL + V +G S AL RV+ G L E+ L
Sbjct: 209 WWLTRAIREREDRMLMEFPTVAELLALAVTAGESAIGALERVSRLTRG---ELGTELRLA 265
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+A+ A E RT + + + + GT + D LR + R
Sbjct: 266 LADARAGATLVQALEGIAARTSLPPLTRFVDGMAVAIERGTPLADVLRAQAVDVREAGKR 325
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ + + +P++ LP ++ PA++S
Sbjct: 326 QLLEAGGRKEIAMMIPVVFLILPTTVIFAFYPALVS 361
>gi|330873645|gb|EGH07794.1| hypothetical protein PSYMP_04415 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963434|gb|EGH63694.1| hypothetical protein PSYAC_02052 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 294
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 126/310 (40%), Gaps = 19/310 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +F+ +++ + +R+ + + +++R+ +I SL +
Sbjct: 3 LVLGTFMFAAAVFLLLSGMARQRRNERLVAQRLRGQVVRESRIGSLLRLLGD-------- 54
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ ++I +D L G+R ++ ++ VPI + + I+
Sbjct: 55 -------TRIGQRSISLDSETQVLLNRIGWRRATKRSLFAACQVGVPIALMSMVILAQVL 107
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ K +E PF A I +G+ P ++ Q+RQ + + LL I ESG
Sbjct: 108 FFKEIEQPF----IAPIFALGIGYLLPKRVLAAAAQRRQKQVVVEISTFIPLLRILFESG 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++++QALR ++ + LS+E+ + + + +D + +
Sbjct: 164 MAVEQALRVLSNEGKDLLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELSDTCVI 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L Q G SL L RL ++ + L K++V M++F P L++V+ GP
Sbjct: 224 LNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGP 283
Query: 318 AILSIIDTMK 327
++I +
Sbjct: 284 GFIAISRALG 293
>gi|326771892|ref|ZP_08231177.1| type II secretion system protein F domain-containing protein
[Actinomyces viscosus C505]
gi|326638025|gb|EGE38926.1| type II secretion system protein F domain-containing protein
[Actinomyces viscosus C505]
Length = 317
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/295 (16%), Positives = 102/295 (34%), Gaps = 7/295 (2%)
Query: 30 AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK--KL 87
+ L R++ R S S + S + +L
Sbjct: 24 VISAFRRRRPTLMARLEPYVHRRPTTSGLLAAPAGPTSDGSTVVGLLMASTARALSLGRL 83
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+++ +L +G S ++ + +++ L+L +
Sbjct: 84 MDTLGSSADSVRRRLTRSG--SSLGVDQFRLQQVLWSTTALLLVLTAGGLAALARSVNVP 141
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ ++ G A W+S V KR S I+ PD ++LL + V +G A+ R+
Sbjct: 142 ALILLCLMGTVAGAAARDWWLSRAVAKRLSRIEAQLPDVVELLALAVGAGQGPVPAIERI 201
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
G L +E+ T+ ++ A + R V +A+I + GT
Sbjct: 202 VALGRG---DLVDELSSTLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIIVALERGTP 258
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + LR ++ R + ++ VP++ LP+ ++ + P + +
Sbjct: 259 LAEVLRSQATDVREAARQDLMEEGGRREIAQMVPVVFLVLPITVVFALFPGLFVL 313
>gi|224824219|ref|ZP_03697327.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224603638|gb|EEG09813.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 324
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/318 (16%), Positives = 117/318 (36%), Gaps = 29/318 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D T + + +++ L+ + K R R Q +++ S
Sbjct: 1 MDTTFAILIVLIFIAVVFLLEGAYLTWNT-------YKGPEATRIERRLQAMSAGAHHSE 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L S V++ L I + L +G + + +
Sbjct: 54 SMNLMKERLLSDTKVVQRF-LLGIPRAHQLDRILLQSGLKLK--------------VGSF 98
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + L L + +L+G G P + + KR + + PDA+D
Sbjct: 99 LGLTLACGLATFFLLQLLPLPLLVPVLVGLAGATIPWMVVMRFRHKRLAKFEEQLPDAID 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + +G ++ Q+L+ + +++ P+S E T E+++ + Q A N R
Sbjct: 159 LMCRALRAGHALPQSLKMIGDEMSD---PISGEFRTTFDEVNYGFSLQEAMMNLATRIPS 215
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + + R+ + + + KL+ I+ LP
Sbjct: 216 TDLRYMVIAVLIQRETGGNLAELLGNISALIRARLKLYGTIRVLAAEGKLSA-WILTILP 274
Query: 309 V---LILVIIGPAILSII 323
L++ ++ P + ++
Sbjct: 275 FAVALVIHLLNPGFMKVL 292
>gi|237812071|ref|YP_002896522.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|237506289|gb|ACQ98607.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 340
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 73 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 132
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P +++ R+
Sbjct: 133 SARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKIYVRRRAAARRQ 186
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 187 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 246
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 247 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 306
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 307 MTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|254197742|ref|ZP_04904164.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169654483|gb|EDS87176.1| type II secretion system protein [Burkholderia pseudomallei S13]
Length = 340
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 99/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 73 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 132
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P +++ R+
Sbjct: 133 SARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKIYVRRRAAARRQ 186
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 187 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 246
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 247 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 306
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 307 MTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|317123666|ref|YP_004097778.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587754|gb|ADU47051.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 652
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/301 (16%), Positives = 107/301 (35%), Gaps = 20/301 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ A +I I + I L +R + +A + + ++ S + S
Sbjct: 329 LMPWIAAGTIGVAILLLAIGILTPSFATRREQRLASLESYMGQTRVASRSEGKHHSAPIA 388
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ +K + + A V+R V + + +G++
Sbjct: 389 EQLVNFGERA----MKGRSSTARTMELINRADLPLR--PGEWWVLRSVAVLSGVAIGMLL 442
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + L +G+ P+ + L +R ++ +R P +L L+ +
Sbjct: 443 FGG----------SALLGAALGFMLGYFLPAFVLRFLAARRAAAFERLLPQSLMLVSTSL 492
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SG + QAL +A+ PL++E +AE + A E +R +R A
Sbjct: 493 RSGFGLPQALDSIAK---DAPDPLAKEFSRGLAETRIGTDIADALERMADRMGSRSMRMA 549
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ G ++ ++L R + + +A S +L+ I+ LP+ +
Sbjct: 550 VMAIRIQREVGGNLAETLETTARTLRERESLHRQVRALSAEGRLSA-YILIALPIGLFFY 608
Query: 315 I 315
+
Sbjct: 609 M 609
>gi|76818607|ref|YP_336474.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|167851190|ref|ZP_02476698.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei B7210]
gi|167899820|ref|ZP_02487221.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 7894]
gi|167916484|ref|ZP_02503575.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 112]
gi|167924341|ref|ZP_02511432.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei BCC215]
gi|254187128|ref|ZP_04893643.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254263188|ref|ZP_04954053.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254296490|ref|ZP_04963946.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|76583080|gb|ABA52554.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 1710b]
gi|157806462|gb|EDO83632.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157934811|gb|EDO90481.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254214190|gb|EET03575.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 325
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 109/294 (37%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F L +
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF--DRLLMRV 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + ++ +G +S+ L + L +P + L + A
Sbjct: 78 PRVQTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 124 TATASAAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVL 293
>gi|298345274|ref|YP_003717961.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
gi|298235335|gb|ADI66467.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
Length = 303
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 94/248 (37%), Gaps = 5/248 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
RD + + K E++ +L AG + + +L +L ++
Sbjct: 59 RDISFSPSGLTKFLTFISPSKESVERRLELAGLPKD--VCEFRRSQLRWATFLGVLAVVL 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
P + G P ++ ++RQ S+ + PD ++LL + V
Sbjct: 117 SIIGFWGRTLPIPGAFVMLTCFVLAGLLVPDYRLTGAARRRQLSLNQELPDVIELLALAV 176
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G + AL RV+ + +E+ +A + + R + + +
Sbjct: 177 GAGEPLYGALHRVS---ARCTDVAGQELEKILAAADNGDSLAPSLTAARARNDSEILAHL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A++ + G+ + LR V+++R+ + + + VP++ LP+ ++
Sbjct: 234 IDAIVSALERGSPLAGVLRSQVADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFA 293
Query: 315 IGPAILSI 322
+ P ++++
Sbjct: 294 LYPGLVAL 301
>gi|325066927|ref|ZP_08125600.1| Type II secretion system F domain [Actinomyces oris K20]
Length = 314
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/307 (15%), Positives = 107/307 (34%), Gaps = 7/307 (2%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ V L+ + L R++ R S S +
Sbjct: 9 LAGLVGAVGLLSVISALRRRRPTLMARLEPYVHRRPTTSGLLAAPAGPTSDGSTVAGLLM 68
Query: 78 KSLRNFVK--KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + +L +++ +L +G S ++ + +++ L+L +
Sbjct: 69 ATTAHALSLGRLMDTLGSSADSVRRRLTRSG--SSLGVDQFRLQQVLWSATALLLVLTAG 126
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ ++ G A W++ V KR S I+ PD ++LL + V
Sbjct: 127 GLAALARSVNVPALILLCLMATVAGAAARDWWLTRAVAKRLSRIEAQLPDVVELLALAVG 186
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G A+ R+ G L +E+ T+ ++ A + R V
Sbjct: 187 AGQGPVPAIERIVALGRG---DLVDELSSTLTDIRSGTVLSTALDRMERRVGSVHVTRLC 243
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A+I + GT + + LR ++ R + ++ VP++ LP+ ++ +
Sbjct: 244 EAIIVALERGTPLAEVLRSQAADVREAARQDLMEEGGRREIAQMVPVVFLVLPITVVFAL 303
Query: 316 GPAILSI 322
P + +
Sbjct: 304 FPGLFVL 310
>gi|148557758|ref|YP_001265340.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148502948|gb|ABQ71202.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 324
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/309 (15%), Positives = 115/309 (37%), Gaps = 22/309 (7%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + + + V I L ++ + A +R + + + +
Sbjct: 1 MLTMLFLMVMAAVVPVFIFVLARPPAQR---AFARRLSTVRGRYNVNGEPGVNEQVRKLL 57
Query: 76 DSKSLRNFVKKLNLKAILVDEN-IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S++ +K L L D I +++ AAG ++++ + ++L ++
Sbjct: 58 ASRATVVRREKTLLNRFLPDPADIHHQIEAAG--KKWTVRQYYTGSGFAFAVPMLLLMLV 115
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
A+I+ G P + ++ L ++R + +PDA++LL+ +
Sbjct: 116 GLP-----------AWMALIVGAAAGLGLPRLVLNILAKRRIAQFITRFPDAIELLVRGL 164
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G+ I + + VA +I G P+ E + + A + +R +
Sbjct: 165 RAGLPIAETMGAVASEIEG---PVGSEFQAVSDRMRIGRTLEGALQETADRLGTAEFQFF 221
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLIL 312
L G ++ ++L L R M+ + A S K + +I + F+ ++
Sbjct: 222 VITLAIQRETGGNLAETLGNLADVLRKRMQMKLKISAMSSESKASAYIIGVLPFVVFGLI 281
Query: 313 VIIGPAILS 321
I P ++
Sbjct: 282 SFISPTYMA 290
>gi|53723214|ref|YP_112199.1| hypothetical protein BPSS2197 [Burkholderia pseudomallei K96243]
gi|126444529|ref|YP_001064083.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126455490|ref|YP_001076996.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|167725255|ref|ZP_02408491.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei DM98]
gi|167744182|ref|ZP_02416956.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 14]
gi|167821381|ref|ZP_02453061.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 91]
gi|167829723|ref|ZP_02461194.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei 9]
gi|226194129|ref|ZP_03789729.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237509857|ref|ZP_04522572.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242313100|ref|ZP_04812117.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|52213628|emb|CAH39682.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|126224020|gb|ABN87525.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126229258|gb|ABN92671.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|225933822|gb|EEH29809.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|235002062|gb|EEP51486.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
gi|242136339|gb|EES22742.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
Length = 325
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 109/294 (37%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F L +
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF--DRLLMRV 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + ++ +G +S+ L + L +P + L + A
Sbjct: 78 PRVQTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 124 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVL 293
>gi|70734195|ref|YP_257835.1| type II secretion system protein F subunit [Pseudomonas fluorescens
Pf-5]
gi|68348494|gb|AAY96100.1| type II secretion system protein F domain [Pseudomonas fluorescens
Pf-5]
Length = 294
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/275 (18%), Positives = 107/275 (38%), Gaps = 5/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+++ Q+ + +R LR + +A+ +D L G+R
Sbjct: 23 EQRRRERQIAQRLQGNMTRDSRLGNWLRLLGDSRFGQRAVSMDSETQTLLNRLGWRRARE 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ P+ L + + ++ Q + +L G+ P ++
Sbjct: 83 RSLFAASQIATPV----LAVCLVIFIQEVAFAQAQSKWLVPMLALGAGYLLPKRALAYAA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ I + LL I ESG++++QALR ++ + L++E+ L +A +
Sbjct: 139 KRRQKHIALEISTFIPLLRILFESGMAVEQALRVLSSEAQKLLPELTQELRLILARVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + L Q G SL+ L RL ++ +
Sbjct: 199 LELGHELNQTATLLAVDEFTDTCVILQQLILQGGGAMKSLQALKQLLDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ K++V M++F P L++V+ GP +I
Sbjct: 259 KMSAKMSVVMMLFLFPALLIVLAGPGFTAIARAFA 293
>gi|116620535|ref|YP_822691.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116223697|gb|ABJ82406.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 323
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/317 (19%), Positives = 123/317 (38%), Gaps = 29/317 (9%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
L V+ ++ L ++ + +R K V S + +
Sbjct: 1 MPLTLIVSFVVVFALMLLAVSLGLKYFD----ARRKKQVVDMLHT------ASGEPAVSV 50
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S L +K+L L + + ++ AG +S + L+ ++ I
Sbjct: 51 SNLLKEIENDKPTGLKRL-LTSFQFSRHAAEMIQQAGL--NWSPSRLMAAMALMMIPGFG 107
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG++ F ++ +++ + AP V + KR ++++ +P++LD
Sbjct: 108 LGLMMPFLFNAPTT---------AVVLALLFGSAPYVVVRQKRSKRLATLEEQFPESLDF 158
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + +G + +L + E++ PL +E E + A NF R +
Sbjct: 159 LARSMRAGHAFSISLEMLGEELAD---PLGQEFRALFNEQNLGAPLDTALRNFTTRVPLL 215
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
VR T +++ + G ++ + L L R ++ + KAAS +LT I+ LPV
Sbjct: 216 DVRFFTSSVLLQKQTGGNLSEILARLAYVIRERFRLKGQVKAASAHGRLTA-TILTLLPV 274
Query: 310 ---LILVIIGPAILSII 323
L L+++ P L +
Sbjct: 275 GTMLALLVVAPGYLQGM 291
>gi|261867450|ref|YP_003255372.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412782|gb|ACX82153.1| TadC [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 288
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I L+L ++ + + I + P V I ++++ + I
Sbjct: 84 VKLLIMLLLFGVYYLYSLTDETTDSSSLLLGFLTILIITIVIPGVLIGSILKAKIKKIMN 143
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+DL+ + V++GISI+ AL++VA D + L+ ML I + A ++
Sbjct: 144 DLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSEI-TGMSQALQD 202
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R + QS +G+SI L L ++ R +L+ E+K +L K+++P
Sbjct: 203 LSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEKLGTLSAKMSIP 262
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+I+F + +I++I+ P ++ +
Sbjct: 263 LILFIMFPIIILILAPGVMRV 283
>gi|154507636|ref|ZP_02043278.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
17982]
gi|153797270|gb|EDN79690.1| hypothetical protein ACTODO_00117 [Actinomyces odontolyticus ATCC
17982]
Length = 298
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 99/272 (36%), Gaps = 6/272 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
R + + + + R E++ +L AG + S+
Sbjct: 31 RRPSFVDRVAQGRVQEHPPSALVAWARRVSASALDSLGSTSESVARRLSLAGMNPDVSV- 89
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG-YVGFCAPSVWISNLVQ 173
+ + V + L+ + + + A L+G +G +++
Sbjct: 90 -FRLRQAVAGVAGLVAACALVAARHASSLRASFIPLCACALVGTLLGVAGMDRFLTMRAN 148
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
RQ +I + PD +LL + V +G SI A+ RVA G PL E+ LT +
Sbjct: 149 ARQRAIDASVPDCSELLALAVAAGESIPAAIERVA---GCAGGPLGVELSLTAGHIRNGT 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + RT+ + ++ L + G+ + L + R L ++
Sbjct: 206 PSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEEGGR 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +P++ LPV ++ + P ++++ T
Sbjct: 266 REIAMLLPVVFLILPVTVMFALYPGLIALDFT 297
>gi|126442067|ref|YP_001058811.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134282402|ref|ZP_01769107.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|126221560|gb|ABN85066.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134246440|gb|EBA46529.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 340
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 98/269 (36%), Gaps = 6/269 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + L +V + L G+ ++ I L
Sbjct: 73 MPEAAPDARRPRFAALLDRAGRFGMRLLDTRLGKQIVADEDRMLLEQCGYVDAHTRGIFL 132
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ I + + + V L GF P ++ R+
Sbjct: 133 SARIACAIALPAAVALVGGETVRTHLGAW------VALSVIAGFMLPKTYVRRRAAARRQ 186
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
S+ P +D+L + G+S+DQ+++ V D G LS E+ + + R+
Sbjct: 187 SVVDEMPLLVDMLRLLQGVGLSLDQSIQVVTNDFRGMLPVLSSELGIAQRQFVAGRTREQ 246
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + + +R + LIQ D++G ++ + L+ R R ++ L K
Sbjct: 247 SLQRLATSFDNEDLRAIVRLLIQVDKHGGAVQEPLKQFGDRLREVRRAMLRERIGRLTVK 306
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+T MI+ LP L +V GP +L++ +
Sbjct: 307 MTGVMILTLLPALFIVTAGPGMLAVTHAL 335
>gi|327543263|gb|EGF29696.1| Flp pilus assembly protein TadB [Rhodopirellula baltica WH47]
Length = 321
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/307 (14%), Positives = 111/307 (36%), Gaps = 32/307 (10%)
Query: 12 TELAVAITTAVSIFSLIY---AVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + + V + SLI +V++PS + E R+ +A ++ + S
Sbjct: 2 SSIIIIVAAGVFVASLIAFGASVLMPSEETTATEDRLTQLAHG----KRGAESDSSTPSF 57
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ L+ ++ + L A + ++ ++ +
Sbjct: 58 LLNDLDDATGLLKTITDRI--------PAVHKILEQADI--DLTVTKFAMICGGCFAAGM 107
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L ++ + + ++G AP ++ ++R P+AL+
Sbjct: 108 VLCVV------------TPIPILLGPIVGATFVGAPVFYVMFKRKRRLKRFGEQIPEALE 155
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G S++ V +++ PL+ E E F + E+ R
Sbjct: 156 LLGRSLRAGHSLNAGFGLVGDEME---APLATEFRRCFEEQKFGIPLDESIEDMAERVPN 212
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A+I + G + + L + R + +A + +++ +++ P
Sbjct: 213 MDLRFFATAVILQRQTGGDLSEILDKIGHLVRERLQILGTIQALTGEGRMSGAVLLALPP 272
Query: 309 VLILVII 315
VL LV++
Sbjct: 273 VLFLVML 279
>gi|187251610|ref|YP_001876092.1| TadB [Elusimicrobium minutum Pei191]
gi|186971770|gb|ACC98755.1| TadB [Elusimicrobium minutum Pei191]
Length = 535
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 84/192 (43%), Gaps = 6/192 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+IF + G ++ + L + + G P + NL ++R + I
Sbjct: 308 LIFAVFGALFGYAVGGFTGVIVFLLILGLGAKVSKGM--PGTVLKNLKRRRGTKINNQLM 365
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D+L LL +++G+ I QA V++D+ P+++E L I + + A E +
Sbjct: 366 DSLILLSNSLKAGMDIVQAFEMVSKDMK---PPIADEFGLVIKNYQLGSSFEQALEMMED 422
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + +A++ + G ++ +V R E +E + +A + ++ +++
Sbjct: 423 RVENRLLSYMIKAIVLQRQVGGNLTKIFERIVETIREESKLEEKLQAMTAQQRIQS-IVV 481
Query: 305 FFLPVLILVIIG 316
+P L++ ++
Sbjct: 482 GIMPWLMISVMF 493
>gi|307548792|dbj|BAJ19114.1| TadC [Aggregatibacter actinomycetemcomitans]
gi|307548807|dbj|BAJ19128.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I L+L ++ + + I + P V I ++++ + I
Sbjct: 84 VKLLIMLLLFGVYYLYSFTDETTDSSSLLLGFLTILIITIVIPGVLIGSILKAKIKKIMN 143
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+DL+ + V++GISI+ AL++VA D + L+ ML I + A ++
Sbjct: 144 DLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSEI-TGMSQALQD 202
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R + QS +G+SI L L ++ R +L+ E+K +L K+++P
Sbjct: 203 LSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEKLGTLSAKMSIP 262
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+I+F + +I++I+ P ++ +
Sbjct: 263 LILFIMFPIIILILAPGVMRV 283
>gi|297192377|ref|ZP_06909775.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197723022|gb|EDY66930.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 296
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 62/294 (21%), Positives = 116/294 (39%), Gaps = 18/294 (6%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
++ ++I V+ + + + + I + T + +R
Sbjct: 5 ALAAVIGIAVVGVFHGIRMYRAEAKLPGDLAIALEVGATRTSYPGMAIDRLG-----MRW 59
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
L + + +L AG +++ R V ++ ++ +
Sbjct: 60 APSVQRLMGPRRVDRVRRRLDMAGNPGGLTVDRYAARRAVYGVLGGLVAFGMLMNGH--- 116
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
V +L G V + + +R+ I+R PD LD+L + V +G+ Q
Sbjct: 117 -------VVLAVLFLLYGLFWTDVLLRAAIARRRDDIERTLPDFLDVLAVVVSAGLGFRQ 169
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL RVAE G P S+E+ +T+ ++ R+ AFE R + + V AL Q +
Sbjct: 170 ALERVAEKYAG---PWSDELRITLRQMDMGMGRREAFEQLRRRNESEQVSMFVSALQQGE 226
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G I D+L + ++ R A +KAA PK T+ + F LP +++I+
Sbjct: 227 ELGAPIVDTLIQIANDMRRTDAQNARRKAAKAVPKATLIVTSFMLPGTMILIVA 280
>gi|78357407|ref|YP_388856.1| hypothetical protein Dde_2364 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219812|gb|ABB39161.1| membrane protein, putative [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 321
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 102/311 (32%), Gaps = 23/311 (7%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ ++ ++ ++ L R V + + R R
Sbjct: 1 MILIATLLAVAACFILVLGTGNLLSARRHEAKVRVSRRLTALAVRHETAPPADIERRRAM 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ K L V + L + + + +IL + +
Sbjct: 61 SGMQWLDK--VLSGRSVMRRLDLILEQ--------------GKTDINVGVIILAAVTLAA 104
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + P WI + +R + R PDALDL+ +++G
Sbjct: 105 AGFAFIRLLTDNFWLCAVTPFAAGYLPFAWILSRRTRRMNRFHRQLPDALDLIARALKAG 164
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ Q +R VA++ P+ E +T+ E++F + A R +R +
Sbjct: 165 HAFPQGMRMVADEFAD---PVGPEFQITLDEINFGVSPDAALHAMTRRVDCADLRFFVVS 221
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVI 314
+ G ++ + + + R + K S +LT I+F LP I+ +
Sbjct: 222 VNIQRETGGNLAEIVSGIALLLRERFKLHGRVKVLSAEGRLTA-WILFALPFGIGFIIHL 280
Query: 315 IGPAILSIIDT 325
+ P +S + T
Sbjct: 281 LNPDFMSALYT 291
>gi|217424158|ref|ZP_03455657.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|254192376|ref|ZP_04898815.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169649134|gb|EDS81827.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|217392623|gb|EEC32646.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 330
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 109/294 (37%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F L +
Sbjct: 31 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF--DRLLMRV 82
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + ++ +G +S+ L + L +P + L + A
Sbjct: 83 PRVQTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 128
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 129 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 188
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 189 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 245
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 246 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVL 298
>gi|330819179|ref|YP_004348041.1| type II secretion system protein [Burkholderia gladioli BSR3]
gi|327371174|gb|AEA62529.1| type II secretion system protein [Burkholderia gladioli BSR3]
Length = 293
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 59/261 (22%), Positives = 110/261 (42%), Gaps = 7/261 (2%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA-----GFRSEYSLNILLVVR 120
A + S L +++ + LV+ I +L AA + + I L+
Sbjct: 28 RRAVPKEDRAYSDPLPRWLRLVWPLVNLVEHGIGERLSAAYVARVELQLRLTHLIFLMTA 87
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + I + + + L +G+ P +W+ ++ + R +I+
Sbjct: 88 RQFIALSFLSAAIASLIAVSAMLALDSFSLLVLPLAALLGYSYPRIWVRDVRRARVVAIR 147
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ P LD L + VE+G++I+ A+++ E L E + +L NR A
Sbjct: 148 KQLPVYLDFLTLAVEAGLNINGAIQKAVEKGPD--GALRSEFEHVLRDLKSGLNRADALR 205
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F R + + N A+IQ++R G+ + +LR + R+ER AEK A KL
Sbjct: 206 RFDERQDIKEITNFVGAVIQAERMGSGLAGTLRFQSEQRRAERFQRAEKLAMEAPVKLVF 265
Query: 301 PMIIFFLPVLILVIIGPAILS 321
P+++F PV +V+ P +
Sbjct: 266 PLMMFIFPVTFVVLGFPIAMR 286
>gi|238759125|ref|ZP_04620294.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
gi|238702673|gb|EEP95221.1| Type II secretion system protein [Yersinia aldovae ATCC 35236]
Length = 273
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 2/216 (0%)
Query: 113 LNILLVVRLVVPIIFLILGII-WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
I+ + + ++F+IL I I ++ + ++ V P V I N+
Sbjct: 57 PYIIHNIIYLRMLLFMILFTISCILIATDVIATNSVTLLYFCFIMLIVVIYFPRVIIRNI 116
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V K+ ++ ++ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 117 VSKKIRTLLQSLPFFIDITAACVQSGMTIDSSLSYTAKKFKLINADLSLIMLKITKRAEI 176
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A + F + ++ AL S +G+++ D L L + R +L+ E+K
Sbjct: 177 N-GLENAIKEFQQYSTETEIKMFCSALQYSIIFGSTVYDQLIKLSQDMREMQLLVTEEKN 235
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ L KLT+P+ +F L + ++I P++L ++ ++
Sbjct: 236 SKLSSKLTLPLFVFILIPFVALVISPSVLELLKYVQ 271
>gi|226310158|ref|YP_002770052.1| hypothetical protein BBR47_05710 [Brevibacillus brevis NBRC 100599]
gi|226093106|dbj|BAH41548.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
100599]
Length = 306
Score = 99.9 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 16/264 (6%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E L + + K A + + V + I KL A F +
Sbjct: 18 EYLGYRAKKTEWKKKAEEWFEVKGKRKSVVIVWGDKFDQTPYAKEIQKKLIKANF--ALA 75
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ I ++ ++ F ++ F V + +V
Sbjct: 76 PSEFYG-------ILIVGTMVLAFLLSNVVNISFPFNFMI---GAVVMYLIQNVLFFVRR 125
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
K Q + + LL + +G+++ Q + VA+++ + P +E EL
Sbjct: 126 NKYQERLNEQLSEVCRLLANSLRAGLTLSQGISLVAKEM---NYPAGDEFSRMARELQLG 182
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + R R T L+ R G ++ L+ + R++ E K
Sbjct: 183 VSFDRALSDMEKRIPTREFRIFTATLLIQRRAGGNLSQVLQEMAETLEDRRIVNQEIKTM 242
Query: 293 SLGPKLTVPMIIFFLPVLILVIIG 316
+ + ++ +PV +++++
Sbjct: 243 TAEQRYVSILV-PIMPVALVLMMN 265
>gi|315655694|ref|ZP_07908592.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315489758|gb|EFU79385.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 303
Score = 99.9 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/248 (15%), Positives = 93/248 (37%), Gaps = 5/248 (2%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
RD N + K E++ +L AG + + +L +L ++
Sbjct: 59 RDISFSPNGLTKFLTFISPSKESVERRLDLAGLPKD--VCEFRRSQLRWAASLGMLAVVL 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
P + G P ++ ++RQ + + PD ++LL + V
Sbjct: 117 SIIGFWGRTLPIPGAFVMLTCFVLAGLLVPDYRLTGAARRRQLRLNQELPDVIELLALAV 176
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G + AL RV+ + +E+ +A + + R + + +
Sbjct: 177 GAGEPLYGALHRVS---ARCTDVAGQELEKILAAADNGDSLAPSLTAARARNDSEILAHL 233
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A++ + G+ + LR V+++R+ + + + VP++ LP+ ++
Sbjct: 234 IDAIVSALERGSPLASVLRSQVADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFA 293
Query: 315 IGPAILSI 322
+ P ++++
Sbjct: 294 MYPGLVAL 301
>gi|262360786|gb|ACY57507.1| hypothetical protein YPD4_0598 [Yersinia pestis D106004]
Length = 193
Score = 99.9 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 1/180 (0%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ +L P + I N + KR +++ ++ P +D+ CV+SG++I+ +L
Sbjct: 14 LLTIGLLSIISTLYLPRMIIKNALTKRTNNLLKSLPFFIDITAACVQSGMTIENSLNYTT 73
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ + L M + A + + ++ L S +G+++
Sbjct: 74 QKFQTINTDLCLIMSKVTKRAEIN-GLENAIKELQYYSPAIEMKMFCSTLQYSISFGSTV 132
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ L L + R +L+ E+ + L KLT+P+ +F L +L++I P+IL +++ +K+
Sbjct: 133 YEQLTHLSQDMREMQLLMTEESISKLSTKLTLPLFLFILIPFVLLVISPSILELLNYVKN 192
>gi|86147460|ref|ZP_01065772.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
gi|85834753|gb|EAQ52899.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
Length = 321
Score = 99.9 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/319 (14%), Positives = 121/319 (37%), Gaps = 31/319 (9%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ + V++ + A+++P+ G K + R ++ + +
Sbjct: 1 MDSVTVSLVLLFVAVLFISQALLLPAAGKKAKHKEL--------TRRLKETQRNIDEESL 52
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S L+ +K L +KL + D + L AG + +L+ L++ + + +
Sbjct: 53 SLLKDHYNKELSPLDRKLIVIPFFAD--LKRMLELAGL--KITLSRFLLIVFLCATLLAL 108
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ ++ + + +++ N V R + + P+ALD+
Sbjct: 109 VALV------------SNQVWFICVAAFVFAWVVAYLFVQNRVTYRMARFEEQLPEALDI 156
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +++G + Q+ V E++ P+ E T L++ + ++A R
Sbjct: 157 IRRALQAGQPLVQSFNEVGEEM---PEPIGVEFKNTYNLLNYGYDLRLAIMQMTERAPTV 213
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + A++ G ++ ++L+ + R+ +E + K S +L+ I+ P
Sbjct: 214 SMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESRLSA-WILTLSPF 272
Query: 310 LILV---IIGPAILSIIDT 325
++ + P + + T
Sbjct: 273 VLFFGLKFVNPEYIEPLYT 291
>gi|295700366|ref|YP_003608259.1| type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
gi|295439579|gb|ADG18748.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1002]
Length = 325
Score = 99.9 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/318 (15%), Positives = 106/318 (33%), Gaps = 28/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
A I ++ V R R R + +++ S
Sbjct: 1 MSPIFYASIILLFAAVVLATGGVYEYWNSRHGPVAR-------RVDSRIRAVSAGGPMSR 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + V L I + L+ +G +S+ V+P L
Sbjct: 54 QRLSILKTRTMAESAVLARLLLRIPRVHALDLFLQQSGL--SWSVGRFFGTCAVLPPFVL 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+G ++ + P V++ +R ++R PD D
Sbjct: 112 IVGA------------SLRVPWVFTAGAAALCTLLPIVYVQRRRHRRIRQLERQLPDVCD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + SG + A+ V + + P+S E + E+++ + A N R +
Sbjct: 160 MLSRALRSGHAFTGAIDMVGAEF---TEPMSGEFRIVFDEINYGVSISEALTNLATRVPI 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + + R + + + S +++ ++ LP
Sbjct: 217 RDLRYFVIAVVIQRETGGNLAEVLDGITALIRDRFKLFDKVRVLSAEGRMSA-WVLGLLP 275
Query: 309 VLI---LVIIGPAILSII 323
+ ++ I P L+++
Sbjct: 276 FGVGGAMMAINPGFLNVL 293
>gi|134281818|ref|ZP_01768525.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|167908137|ref|ZP_02495342.1| Flp pilus assembly protein TadB [Burkholderia pseudomallei NCTC
13177]
gi|134246880|gb|EBA46967.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 325
Score = 99.9 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 109/294 (37%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F L +
Sbjct: 26 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF--DRLLMRV 77
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + ++ +G +S+ L + L +P + L + A
Sbjct: 78 PRVQTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 123
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 124 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 183
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 184 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 240
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 241 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFGTAALLSIMNPDFISVL 293
>gi|283852077|ref|ZP_06369351.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
gi|283572467|gb|EFC20453.1| type II secretion system protein [Desulfovibrio sp. FW1012B]
Length = 327
Score = 99.9 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/309 (15%), Positives = 115/309 (37%), Gaps = 32/309 (10%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+ + ++ + E+ +R++ +A Q L D A ++ +
Sbjct: 18 VYLFVAVVLVIRRLTDTSGKEMARRLEQLA---------QGKGLGADFAGDIVKKHEMSG 68
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
LR + L + L A E L + +++ LV + + +++ +
Sbjct: 69 LRWL--DVFLSRQAWSRRMDRMLDQADI--EAPLGLFVLLSLVFGVTGYVAASLYLGNF- 123
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
A + IG+ P WI+ KR ++ + P+AL+L+ +++G +
Sbjct: 124 -----------LARVAIGFALGVLPFKWIAMRKAKRMAAFETQLPEALELVGRALKAGHT 172
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ V + P+ E T+ E++F VA +N R + ++
Sbjct: 173 FSSGMGMVVSEFAE---PIRGEFQKTMEEVNFGMGVTVALDNLMERVDCPDLNFFVISVK 229
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIG 316
+ G ++ + + + R ++ + S ++ ++ LP + + ++
Sbjct: 230 IQNETGGNLAEIVENIAWLIRERIKLKGRIRVLSAEGRM-AAWVLCLLPFFVCGAVQMLN 288
Query: 317 PAILSIIDT 325
P L+++ T
Sbjct: 289 PGYLNLLFT 297
>gi|54302282|ref|YP_132275.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
gi|46915704|emb|CAG22475.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum SS9]
Length = 288
Score = 99.9 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/268 (17%), Positives = 102/268 (38%), Gaps = 23/268 (8%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + S LR L +K L+ V E + L AG + I
Sbjct: 10 AETGNGQNQQSLLRKHYLDKLTPTERK--LENNAVGEYLSEHLTLAGLEWKAYKTIFW-- 65
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+I I + + IL+ ++ + + W+ +KR
Sbjct: 66 ------------LIIISIVAAPITLVLTKSIIFSILVPFITVLSFTFWLKYKAEKRLCLF 113
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + +ALD++ + G + ++ V++++ P+S E T +EL++ + +VA
Sbjct: 114 EEQFVEALDVMKRALLVGYPFTEVMKTVSQEM---PAPISVEFGKTFSELNYGVDIKVAL 170
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
N R V A+I G ++ ++L L R + + ++ S +++
Sbjct: 171 ANLAQRNPSISVLAFNSAVIIQKETGGNLAETLENLSEVIRGRFRLLRKVRSLSAEGRMS 230
Query: 300 VPMIIFFLPVLILVIIG---PAILSIID 324
I+ +P +++++I P L +
Sbjct: 231 A-WILMCVPFVLVIMIYLSTPDYLDPLF 257
>gi|147677787|ref|YP_001212002.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
gi|146273884|dbj|BAF59633.1| flp pilus assembly protein TadC [Pelotomaculum thermopropionicum
SI]
Length = 323
Score = 99.9 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/316 (14%), Positives = 113/316 (35%), Gaps = 30/316 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L +A+ +S+ + G + RM+ + R + S ++ + R
Sbjct: 4 LTIAVLVFLSVLLFSQGLQQLIAGEKETVAVRMERILGNRMYNALARARSKGGNAGTGRR 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ A + + + +L A + L + +++ I +
Sbjct: 64 VLELAGRF--------FTARKITDRVDAQLARADIPLKG--EEFLGLVMILSIGGGLFIF 113
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
A + +G P + KR DAL ++
Sbjct: 114 AVTG------------SPVAGSIAAVLGVYLPCFILRLAKTKRLVKFNGQIGDALIIMAN 161
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ SG S QA+ V +++ G P+++E + E+++ + A N +R + +
Sbjct: 162 SLRSGFSFLQAMDMVRKEMPG---PIAKEFGAALQEMNWGTPTEEALLNMVSRVNSEDLE 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI- 311
A++ + G ++ + L + R ++ E K + +++ +II LP+ +
Sbjct: 219 LVVTAVLIQRQVGGNLAEVLDKIAFTIRERVRIKREIKTLTAQGRISG-LIIGLLPIFLS 277
Query: 312 --LVIIGPAILSIIDT 325
+ ++ A + ++ T
Sbjct: 278 IAIFLLNHAYMKVLFT 293
>gi|260574612|ref|ZP_05842615.1| type II secretion system protein [Rhodobacter sp. SW2]
gi|259023029|gb|EEW26322.1| type II secretion system protein [Rhodobacter sp. SW2]
Length = 322
Score = 99.9 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/309 (16%), Positives = 115/309 (37%), Gaps = 32/309 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ L+ + + G S+ + ++ +LR
Sbjct: 8 IIYILIFVAVVMLVEGIYLTVFGKS------ISLNSRVSRRLALLEKNSNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S+ L+ + I + + K + A L + I +L +
Sbjct: 62 EMSQHLKA-------RGIPLYSILAEKAQKANI---------AFSPLALIGIMGLLAVFS 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + P Q+R+ I +G G W++ +KR + ++ PDA++L++ +
Sbjct: 106 YLGLTIGTQAPTQVRILVAIAMGIGGVYV---WVNGKAKKRIALMEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ V++++ PL E + E ++ + + + F R +R
Sbjct: 163 RVGHPFASAIAIVSKEVAD---PLGTEFGIIGDEAAYGRDVTESLKAFAERMDNQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LI 311
+ A+ + G ++ + L L R+ + KA + K + M + P+ ++
Sbjct: 220 SVAVTIQQQSGGNLAEILEGLAKVIRARFKLFRRVKAITAEAKWSG-MFLSAFPIGALVM 278
Query: 312 LVIIGPAIL 320
++++ P
Sbjct: 279 ILMLKPDYF 287
>gi|330959999|gb|EGH60259.1| hypothetical protein PMA4326_15689 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 294
Score = 99.9 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/315 (17%), Positives = 118/315 (37%), Gaps = 24/315 (7%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L A+ + F L+ + +E+R++ + + L
Sbjct: 3 LLFSALMLTAAAFLLLSGIARRRRDERLVEQRLRGIVLRESRLGSLLRLLGD-------- 54
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
++ ++I +D L G+R ++ ++ VP+ + +
Sbjct: 55 ------------TRVGQRSISLDSETQILLNRIGWRRASKRSLFAACQIGVPVGLMCVVA 102
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + K +E P + A + VG+ P ++ ++RQ + + LL I
Sbjct: 103 LVQLLFFKNIEQP----LIAPVFALGVGYLLPKRVLAVAAKRRQKQVVLEISTFIPLLRI 158
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
ESG++++QALR ++ + LS+E+ + + + +D +
Sbjct: 159 LFESGMAVEQALRVLSSEGKELLPVLSDEIRVVLTRVDSGLELGEELRKTAALLAVDELS 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L Q G SL L RL ++ + L K+++ M+ F P L++
Sbjct: 219 DTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSMVMMAFLFPALLI 278
Query: 313 VIIGPAILSIIDTMK 327
V+ GP ++I +
Sbjct: 279 VLAGPGFIAISRALG 293
>gi|294140781|ref|YP_003556759.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293327250|dbj|BAJ01981.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
Length = 325
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 54/308 (17%), Positives = 119/308 (38%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E+ +++ L A+ +P + R+ L+K +
Sbjct: 1 MFSNEVIFLGLIFLAVILLSQALFLPVYSPQRANTALI-----RKRLKKLSANAGDTSIE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L + L NF +K L+ I EN+ +L A + + + L++ ++ II
Sbjct: 56 VSLLHKSKLEKLSNFGRK--LERIEFIENLSYRLELADY--KMMGHHFLILGVLTSIITA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ +I I++ + ++ ++ KR +I+ +PD LD
Sbjct: 112 MITWFYI------------SDPFMTIIVFVITAFLFNMKLNRDTNKRMDTIEADFPDGLD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G S A++ E++ G PL++E L +++ + + A F R
Sbjct: 160 VIRRALQAGYSFTDAIKLATEELEG---PLAKEFKLMFVNINYTKDIKRALLGFIQRVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R K S +L+ I+ LP
Sbjct: 217 VSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEGRLSA-WILILLP 275
Query: 309 VLILVIIG 316
++ +I
Sbjct: 276 FVLFAVIY 283
>gi|293189314|ref|ZP_06608037.1| type II secretion system protein [Actinomyces odontolyticus F0309]
gi|292821777|gb|EFF80713.1| type II secretion system protein [Actinomyces odontolyticus F0309]
Length = 298
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 49/272 (18%), Positives = 100/272 (36%), Gaps = 6/272 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
R + + + R + R E++ +L AG + S+
Sbjct: 31 RRPSFVDRVAQGRVQERPPSALVAWARRMSASALDSLGSTSESVARRLSLAGMNPDVSV- 89
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG-YVGFCAPSVWISNLVQ 173
+ + V + L+ + + + A L+G +G +++
Sbjct: 90 -FRLRQAVAGVAGLVAACALVAARHASSLRASFIPLCACALVGTLLGVAGMDRFLTMRAN 148
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
RQ +I + PD +LL + V +G SI A+ RVA G PL E+ LT +
Sbjct: 149 ARQRAIDASVPDCSELLALAVAAGESIPAAIERVA---GCAGGPLGAELSLTAGHIRNGT 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + RT+ + ++ L + G+ + L + R L ++
Sbjct: 206 PSVRALADLVERTESPALTRLSRTLTTAIERGSPLASVLHDQARDQRERSLAALMEEGGR 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +P++ LPV ++ + P ++++ T
Sbjct: 266 REIAMLLPVVFLILPVTVMFALYPGLIALDFT 297
>gi|227875850|ref|ZP_03993976.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269977485|ref|ZP_06184457.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|306819131|ref|ZP_07452845.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307700029|ref|ZP_07637078.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
gi|227843598|gb|EEJ53781.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269934401|gb|EEZ90963.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|304648107|gb|EFM45418.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|307614790|gb|EFN94010.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
Length = 297
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 108/244 (44%), Gaps = 5/244 (2%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
L + DE++ ++ AG S+ +L+ + + + I I ++
Sbjct: 56 RLASLRELGLVSSDESVRRRIVLAG--SKTTLSEIRRRQKLGAIWMGIAALLLTILGAAA 113
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ A+++ +G P +S ++RQ + + PDA++LL + V +G S+
Sbjct: 114 HTLNPLAAIFAILVFPLMGVVYPDYRLSAGAKQRQMQLNQELPDAIELLALAVGAGESLY 173
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
AL RVA + EE+ +AEL ++ ++ RT+ + + + A++ +
Sbjct: 174 MALERVAS---RCTQVTGEELTRLMAELKQGEALSMSLTSWRTRTESEVLSHLVDAVVSA 230
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
G+ + LR V+++RS + + + +P++ LP+ ++ + P +++
Sbjct: 231 LERGSPLAQVLREQVADSRSAARNQLLAQGGKKEVWMMIPVVFLILPLTVVFALYPGLVA 290
Query: 322 IIDT 325
+ T
Sbjct: 291 LQMT 294
>gi|218132581|ref|ZP_03461385.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
43243]
gi|217992307|gb|EEC58310.1| hypothetical protein BACPEC_00440 [Bacteroides pectinophilus ATCC
43243]
Length = 444
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 10/189 (5%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ A +L V+ R ++ + + + L + +G+S+
Sbjct: 254 GGNAVPAIIMAGVLAAAALIAGREQGKRKAVRLRNKQLQYDYTEIVSKLTLLTGAGMSVR 313
Query: 202 QALRRVA--------EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+A ++A + + + EEM+ T+ ++ + +A+ F R + R
Sbjct: 314 RAWEKIALDYNNKMKDMPKEKYHAVYEEMMTTLRQMQSGMSENIAYAEFGRRCGIKEYRK 373
Query: 254 ATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L Q+ R GT + L E +R A++ G KL +PMI+ L V+++
Sbjct: 374 LGTLLEQNVRKGTRGLSVLLEQESEEAFEQRKNLAKQLGEEAGTKLLLPMIL-MLAVVMV 432
Query: 313 VIIGPAILS 321
+++ PA++S
Sbjct: 433 IVMVPAMMS 441
>gi|5670332|gb|AAD38174.2|AF152598_3 TadC [Aggregatibacter actinomycetemcomitans]
gi|26000717|gb|AAN75213.1| TadC [Aggregatibacter actinomycetemcomitans]
Length = 288
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 1/201 (0%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I L+L ++ + + I + P V I ++++ + I
Sbjct: 84 VKLLIMLLLFGVYYLYSFTDETTDSSSLLLGFLTILIITIVIPGVLIGSILKAKIKKIMN 143
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+DL+ + V++GISI+ AL++VA D + L+ ML I + A ++
Sbjct: 144 DLAGFIDLVAVNVQTGISIEAALKQVATDFKTLNPDLTYVMLRIIRKSEI-TGMSQALQD 202
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+R + QS +G+SI L L ++ R +L+ E+K +L K+++P
Sbjct: 203 LSVSLPTTEIRMFCTVMQQSLNFGSSIYHQLIQLSTDIREIQLLAIEEKLGTLSAKMSIP 262
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+I+F + +I++ + P ++ +
Sbjct: 263 LILFIMFPIIILTLAPGVMKV 283
>gi|325673437|ref|ZP_08153128.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
gi|325555458|gb|EGD25129.1| type II secretion system protein [Rhodococcus equi ATCC 33707]
Length = 623
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 102/308 (33%), Gaps = 38/308 (12%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ ++ +S + V+ G R ++D S L
Sbjct: 317 LVIGLLACYSALAGGVLAVAGRAPA--------------RISAARRGRQDGRDSMLSRFA 362
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ ++ NL+ L+ AG + + ++
Sbjct: 363 ERLVQWI--DQNLRRRGRIAARTQALQEAGLKLRP---------------GDFIALVGAA 405
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ A +L+ + +++ + +R+++ D+L LL + +
Sbjct: 406 AITAAAIGLLASGIVAALLLAAITVGLSRIYLRVMAGRRRAAFADQLDDSLQLLASNLRA 465
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+ +AL ++ VP SEE + E + + ++ R + D Q
Sbjct: 466 GHSMLRALDSLSR---EAEVPTSEEFARIVNETRVGRDLNESLDDVARRMRSDDFNWIAQ 522
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILV 313
A+ + G + + L + + R + + KA + KL+ ++ LP L+
Sbjct: 523 AIAINREVGGDLAEVLDQVGNTIRERNQIRRQVKALAAEGKLSA-YVLMALPFGLTAFLL 581
Query: 314 IIGPAILS 321
+ P LS
Sbjct: 582 VSNPDYLS 589
>gi|254487450|ref|ZP_05100655.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
gi|214044319|gb|EEB84957.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. GAI101]
Length = 320
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 51/300 (17%), Positives = 109/300 (36%), Gaps = 28/300 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + + G S+ + +++ +LR
Sbjct: 6 LIYGLIFIGVLVLVEGLYLVAFGKS------ISLNSRVNRRLEMLEKGTRREEVLDKLRK 59
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + N I + L +++ + +L++ + L +
Sbjct: 60 EMQQHMDN-----------KSIPIYSMLA---AKAQKAAIAFSPKQLIMLMGGLSVVAFM 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
E P + + I IG V F WIS+ +KR S I+ PDA++L++ +
Sbjct: 106 GLTIGTATEVPIRAVISVAIGIGAVYF-----WISSKAKKRMSMIEEQLPDAVELMVRSL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ V+++I PL+ E + E ++ + A + R M +R
Sbjct: 161 RVGHPFTNAIAIVSKEIQD---PLASEFGIISDEAAYGRDIGEALKEMAERLDMQDLRFL 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + A + K + + F V ++VI
Sbjct: 218 AVAVTIQQQSGGNLAEILAGLAKVIRARFKLFRRVNAITAEAKWSGKFLSAFPIVALIVI 277
>gi|29829793|ref|NP_824427.1| hypothetical protein SAV_3251 [Streptomyces avermitilis MA-4680]
gi|29606902|dbj|BAC70962.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 301
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L ++ AG +LN R V I ++LG+I++
Sbjct: 69 LRLMGPRRVAAKRRRIDMAGNPGGLTLNRYAARRAVYGIFGVVLGLIFLTNGHP------ 122
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ G A I V++R+ I R PD LD+L + V +G+ QAL R
Sbjct: 123 ----LFALGTLAFGLLAADALIWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDR 178
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VAE G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+
Sbjct: 179 VAEKYEG---PWADELRITLRQMDMGVSRRQAFDELRKRNSSEQVAQFVSALQQGEELGS 235
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I ++L L ++ R A ++AA PK T+ ++F LP +++I L
Sbjct: 236 PIAETLIQLATDMRRTDAQNARRRAAKTIPKATMVTLVFMLPATMILIATGMFLG 290
>gi|134299963|ref|YP_001113459.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134052663|gb|ABO50634.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 323
Score = 99.5 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 111/312 (35%), Gaps = 28/312 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A+T +S L+ + + ++ +I K L + + +
Sbjct: 6 IALTIFISGSLLVLGI-----HRIRSKDSLEISHRMNKITAKTFRQRLAQSDSEETPKEG 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L F K ++ I L A I+ ++
Sbjct: 61 WRGLLNPFSKIFAKQSFSKRMEIE--LTKADIPLRGEE--------------FIVLLLLT 104
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L L + ++ G +G P ++I QKR + DAL ++ +
Sbjct: 105 GFGCSLFFTLLTLNLAFGVVAGLLGLIVPFLFIRIKRQKRLAKFNSQISDALVIMSNSLR 164
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG S QA+ V +++ P+S+E T E++ + A EN R + D +
Sbjct: 165 SGFSFLQAMDMVRKELPN---PISKEFGRTFQEMNLGTQAEEALENMAQRVKSDDLDLLI 221
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LIL 312
A++ + G ++ + + + R ++ + + + +++ +I LP ++
Sbjct: 222 TAVLIQRQVGGNLAEVMDNIADTIRERVRVKGQIRTLTAQGRISG-FVIGLLPFGLTTVM 280
Query: 313 VIIGPAILSIID 324
+ I P+ + +
Sbjct: 281 ITISPSYILTLF 292
>gi|330953057|gb|EGH53317.1| type II secretion system protein [Pseudomonas syringae Cit 7]
Length = 294
Score = 99.5 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 54/275 (19%), Positives = 109/275 (39%), Gaps = 5/275 (1%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R+ + ++ +R LR ++ ++I +D L G+R
Sbjct: 23 RQRRNERLVAKRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQILLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ ++ + L Q + A I VG+ P ++
Sbjct: 83 RSLFAACQVGVPVGLMV----MVILGQLLFFKGVQQPLIAPIFALGVGYLLPKRILAAAA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 RRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLVRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+D + + L Q G SL +L RL ++ +
Sbjct: 199 LELGEELRKTAALLAVDELSDTCVILNQLIHQGGGALKSLLMLKQLIDDRRLTRLQEYIS 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L K++V M++F P L++V+ GP ++I +
Sbjct: 259 KLSAKMSVVMMVFLFPALLIVLAGPGFMAISRALG 293
>gi|330976793|gb|EGH76829.1| type II secretion system protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 294
Score = 99.5 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 52/302 (17%), Positives = 114/302 (37%), Gaps = 24/302 (7%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
L+ + + +R++ + +
Sbjct: 16 VLLSGIARQRSNERLVARRLRGQVIRESRIGSLLRLLGD--------------------T 55
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
++ ++I +D L G+R ++ ++ VP+ +++ I+ + K ++ P
Sbjct: 56 RIGQRSISLDSETQILLNRIGWRRASKRSLFAACQVGVPVGLMVIVILGQLLFFKGIQQP 115
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ A I G+ P ++ + ++RQ + + LL I ESG++++QALR
Sbjct: 116 ----LIAPIFALGAGYLLPKRILATVARRRQKQVVVEISTFIPLLRILFESGMAVEQALR 171
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
++ + LSEE+ + + + +D + + L Q G
Sbjct: 172 VLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLDVDELSDTCVILNQLIHQG 231
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
SL L RL ++ + L K++V M++F P L++V+ GP ++I
Sbjct: 232 GGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVLAGPGFMAISRA 291
Query: 326 MK 327
+
Sbjct: 292 LG 293
>gi|320008843|gb|ADW03693.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 295
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 61/304 (20%), Positives = 110/304 (36%), Gaps = 22/304 (7%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ A+ + + ++ V +A+ E+ +
Sbjct: 3 LLLALVVGASVFGVFKGIRMYRAEATLPGDLALALEVGSTRTTAVGSGIDRLGMRWAPLV 62
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
L L K+ AG +++ R V + +
Sbjct: 63 ---------LRLMGPKKVNEKRRKIDMAGNPGGLTIDRYAARRAVYSALGGFAAFAML-- 111
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + G V I V+KR+ I R PD LD+L + V +G
Sbjct: 112 --------TSGKFFMALFMIAFGLFWGEVGIWAAVRKRRDDIDRTLPDFLDVLAVVVSAG 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ QAL RVAE G P S+E+ +T+ ++ +R+ AF+ R + V A
Sbjct: 164 LGFRQALDRVAEKYQG---PWSDELRITLRQMDMGVSRRQAFDELRRRNDSEQVAMFVTA 220
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L Q + G I D+L + ++ R A +KAA PK T+ + F +P ++++
Sbjct: 221 LQQGEELGAPIVDTLIAIANDMRRTDAQNARRKAAKAVPKATLMVTTFMIPATMILMGAA 280
Query: 318 AILS 321
+L
Sbjct: 281 MLLG 284
>gi|254182576|ref|ZP_04889170.1| type II secretion system protein [Burkholderia pseudomallei 1655]
gi|184213111|gb|EDU10154.1| type II secretion system protein [Burkholderia pseudomallei 1655]
Length = 330
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 109/294 (37%), Gaps = 29/294 (9%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+ G +R+++ +R + S L+ R + F L +
Sbjct: 31 WWNARHGPAARRIEA------RIRAMSAGGQVQKERLSILKERMLNDAKPF--DRLLMRV 82
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + ++ +G +S+ L + L +P + L + A
Sbjct: 83 PRVQTLDLMIQQSGL--TWSVVKLAWISLAIPFAAFVALGF------------TPLPLWA 128
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
C P++++ +R ++R PDA D++ + +G + A+ V +
Sbjct: 129 TATASVAAVCLPTLFVLRCRTRRLRKLERQLPDACDMIARALRAGHAFSSAISMVGGEFA 188
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P+ E +T E+++ + Q A N R + +R A++ G ++ + L
Sbjct: 189 E---PMGGEFRITFDEINYGVSLQEALLNLATRVPVSDLRYFVIAVLIQRETGGNLAELL 245
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ R + + + S KL+ +I+ LP +L I+ P +S++
Sbjct: 246 DGIAQLIRERFKLFDKIRVLSAEGKLSA-LILTLLPFATAALLSIMNPDFISVL 298
>gi|73539235|ref|YP_299602.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72122572|gb|AAZ64758.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 344
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 55/279 (19%), Positives = 108/279 (38%), Gaps = 7/279 (2%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR 108
A + +RL R ++ L +V + L G+
Sbjct: 67 ATRVAAPGTPSAPAGSAAQIGARLGGRVDAHWLRWLDS-PLGRAVVTAEEILLLEQCGWH 125
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ I +RL VP++ + W + + V + AP ++
Sbjct: 126 GLRARAIFGALRLNVPVLLALCAAAW------HVGQGLAASLAWGFATFAVSYLAPKHYL 179
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
Q R S++ P +D+L + G+SIDQ+L+ + + GG L E+ L+ +
Sbjct: 180 RRRAQARLRSVEDELPIVIDMLRLLQGVGLSIDQSLQIIVSEFGGMLRVLGPELALSNQQ 239
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ +R+ + +++ L Q DR+G ++ + LR+ + R +
Sbjct: 240 FASGRSREQTLLRIGRLFDSENLKSLITLLTQVDRHGGAVQEPLRLFGQRMQEARKSRMK 299
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ L K+T M++ LPVL+++ GP L +I +
Sbjct: 300 DEIGRLTVKMTAVMVVSMLPVLLIITAGPGFLGVIRMLA 338
>gi|317491688|ref|ZP_07950123.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920122|gb|EFV41446.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 279
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 96/200 (48%), Gaps = 1/200 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I +I G++ + + + ++ I + P++ ++ + R + A P
Sbjct: 77 ICGVIGGVLLVLNIVGIFSISMKALAMIMLFIFMIVLVLPAMMLNPAINTRIKLMLDALP 136
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+DL+ +CV++G++++ +++ +AE L++ ML + + + Y
Sbjct: 137 YFVDLIAVCVQAGMTVESSVKFIAERSADLDKNLADLMLHLVKRAEV-SGLEEGLMDLYR 195
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
M +R L QS YGTS+ ++L L + R +L+ +E+K L K++VP+I+
Sbjct: 196 SMDMTEMRMFCATLQQSVHYGTSLYENLMELSKDIRDMQLLNSEEKIGKLSAKMSVPLIL 255
Query: 305 FFLPVLILVIIGPAILSIID 324
F + + ++I P IL I+
Sbjct: 256 FIMFPITILIAAPGILRIMQ 275
>gi|238796992|ref|ZP_04640496.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
gi|238719252|gb|EEQ11064.1| Type II secretion system protein [Yersinia mollaretii ATCC 43969]
Length = 267
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 1/202 (0%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ L ++ + +++ P + I ++ KR SI ++ P +
Sbjct: 67 IALVTTAALVLTDMMTVNLKNIATVGLIVLIAISYLPKMIIKKIITKRTESILKSLPFFI 126
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+ CV+SG++ID +L A+ + +S ML + A + + T
Sbjct: 127 DITAACVQSGMTIDNSLSYSAKKFKLINADISFIMLKMTKRGEIN-GLESAIKELHQCTT 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+R AL S +G+++ D L L + R +L+ E++ + L KLT+P+ +F L
Sbjct: 186 AKEIRMFCSALQYSISFGSTVYDQLTKLSQDIREMQLLVTEERISKLSAKLTIPLFLFIL 245
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
I+++I P+IL II ++++
Sbjct: 246 IPFIVLVISPSILEIITYVQNN 267
>gi|218887823|ref|YP_002437144.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758777|gb|ACL09676.1| type II secretion system protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 321
Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/311 (15%), Positives = 109/311 (35%), Gaps = 23/311 (7%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +++ S+I V R ++ A + + + + R R
Sbjct: 1 MMLVIAVLSVIAMFVFVMGVLDLAYGRRRATAQRVGQRMENLLRAKNEQDRVDLERRRAL 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + L ++ ++ L A ++ + L+L +
Sbjct: 61 SDVDWLHRMLAAQSWTKKMDLA--LEQA--------------QVRATLGMLLLASVLGAA 104
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L+ + + ++ P +W+ R +R PDALDL+ +++G
Sbjct: 105 SCFLVMHLLVNNLFLLVAPPLALGYTPFLWVQRKRNARMGRFQRQLPDALDLIARALKAG 164
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ +Q +R VA++ P+ E T+ E++F A N R ++ +
Sbjct: 165 HAFNQGMRMVADEFAD---PIGPEFQKTLDEINFGIPADAALYNLTRRVDCPDLKFFVVS 221
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVI 314
+ G ++ + + + R + + S +LT I+F LP I+ +
Sbjct: 222 VNIQRETGGNLAEIVTNIARLIRERFKLAGRVRVLSAEGRLTA-WILFVLPFGIGFIINL 280
Query: 315 IGPAILSIIDT 325
+ P +S +
Sbjct: 281 LNPDFMSALYA 291
>gi|312139258|ref|YP_004006594.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311888597|emb|CBH47909.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 622
Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 102/308 (33%), Gaps = 38/308 (12%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ ++ +S + V+ G R ++D S L
Sbjct: 316 LVIGLLACYSALAGGVLAVAGRAPA--------------RISAARRGRQDGRDSMLSRFA 361
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ ++ NL+ L+ AG + + ++
Sbjct: 362 ERLVQWI--DQNLRRRGRIAARTQALQEAGLKLRP---------------GDFIALVGAA 404
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ A +L+ + +++ + +R+++ D+L LL + +
Sbjct: 405 AITAAAIGLLASGIVAALLLAAITVGLSRIYLRVMAGRRRAAFADQLDDSLQLLASNLRA 464
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+ +AL ++ VP SEE + E + + ++ R + D Q
Sbjct: 465 GHSMLRALDSLSR---EAEVPTSEEFARIVNETRVGRDLNESLDDVARRMRSDDFNWIAQ 521
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILV 313
A+ + G + + L + + R + + KA + KL+ ++ LP L+
Sbjct: 522 AIAINREVGGDLAEVLDQVGNTIRERNQIRRQVKALAAEGKLSA-YVLMALPFGLTAFLL 580
Query: 314 IIGPAILS 321
+ P LS
Sbjct: 581 VSNPDYLS 588
>gi|28572729|ref|NP_789509.1| hypothetical protein TW581 [Tropheryma whipplei TW08/27]
gi|28410862|emb|CAD67247.1| putative membrane protein [Tropheryma whipplei TW08/27]
Length = 298
Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/307 (14%), Positives = 102/307 (33%), Gaps = 16/307 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
++A+++ AV++ I ++ +R+
Sbjct: 4 QIALSVLFAVTLGCGIASLTFMLSPVSTFRRRLTPYLSRLSQDMCFSFRRPLYRELFGVF 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R L F + + I N+ + S+ + ++ + + +
Sbjct: 64 RI----YLNRFYRTQPSGKLAGLLEISNR--------DQSVVDFRITQIAISALLTGVFW 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + A + +C + + V+KR+ I P A + L +
Sbjct: 112 VLFCLLLFSGQVNIVFGLLAPAVFAGSFWCIENN-LRRYVKKRKQKILNEMPSAFEFLSL 170
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V +G + A++R+ S E+ + +S + + + + +
Sbjct: 171 SVSAGEGVLDAIKRICFI---SKGEFSIELKKVLIGVSSGDTLERCLKRMAAKLDIVSID 227
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
A +I + GT + D L E R+ + ++A + P++ F LPV IL
Sbjct: 228 RAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQAGKKEIAMMFPLVFFILPVTIL 287
Query: 313 VIIGPAI 319
I P I
Sbjct: 288 FAIFPGI 294
>gi|304390831|ref|ZP_07372783.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325714|gb|EFL92960.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 303
Score = 99.1 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 90/239 (37%), Gaps = 5/239 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + E++ +L AG + + +L +L ++
Sbjct: 68 LTRFLTFISPSKESVERRLELAGLPRD--VCEFRRSQLRWAASLGMLAVVLSIIGFWGRT 125
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
P + G P ++ ++RQ + + PD ++LL + V +G + A
Sbjct: 126 LPIPGAFVMLTCFVLAGLLVPDYRLTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGA 185
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L RV+ + +E+ +A + + R + + + A++ +
Sbjct: 186 LHRVS---ARCAGVAGQELEKILAAADNGDSLAPSLTAARARNDSEILAHLIDAIVSALE 242
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G+ + LR V+++R+ + + + VP++ LP+ ++ + P ++++
Sbjct: 243 RGSPLAGVLRSQVADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301
>gi|315656392|ref|ZP_07909281.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492951|gb|EFU82553.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 303
Score = 99.1 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 90/239 (37%), Gaps = 5/239 (2%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ + E++ +L AG + L +L +L ++
Sbjct: 68 LTRFLTFISPSKESVERRLELAGLPRD--LCEFRRSQLRWAASLGVLAVVLSIIGFWGRT 125
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
P + G P ++ ++RQ + + PD ++LL + V +G + A
Sbjct: 126 LPIPGAFVMLTCFVLAGLLVPDYRLTGAARRRQLRLNQELPDVIELLALAVGAGEPLYGA 185
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L RV+ + +E+ +A + + R + + + A++ +
Sbjct: 186 LHRVS---ARCAGVAGQELEKILAAADNGDSLAPSLTAARARNDSEILAHLIDAIVSALE 242
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G+ + LR V+++R+ + + + VP++ LP+ ++ + P ++++
Sbjct: 243 RGSPLAGVLRSQVADSRAVARTQLLTEGGKKEVLMMVPVVFLILPLTVVFALYPGLVAL 301
>gi|156975614|ref|YP_001446521.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
gi|156527208|gb|ABU72294.1| hypothetical protein VIBHAR_03347 [Vibrio harveyi ATCC BAA-1116]
Length = 187
Score = 99.1 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 75/162 (46%), Gaps = 1/162 (0%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + + + P LD++ +CV++ ++I+ + +A+++ L ++
Sbjct: 21 PDLLLEMRKRMLVRKVSKNLPYVLDIMSVCVQTCMTIEASFAYLAQELKIFDKDLCYQIN 80
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T + A + R + + +IQ+ YG S+ + L L + R +
Sbjct: 81 KTSEAGKV-HGIEKALHDLSVRLPAPEINSFVLTIIQNLHYGASVANVLSDLAEDMRRIK 139
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L+E E+K L K++VP+I+ + +++ I+ P L I T
Sbjct: 140 LLEIEEKMGKLSAKMSVPLILLIMFPIVIFILAPGFLQIDFT 181
>gi|170740617|ref|YP_001769272.1| type II secretion system protein [Methylobacterium sp. 4-46]
gi|168194891|gb|ACA16838.1| type II secretion system protein [Methylobacterium sp. 4-46]
Length = 322
Score = 98.7 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 58/315 (18%), Positives = 119/315 (37%), Gaps = 32/315 (10%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L VA AV+ L YAVV+P L S KR +++A R + + Q + ++
Sbjct: 7 LIVAGLLAVTASCLAYAVVVPLLPSEARAAKRQQAIAGRRSPMERVQAVNRREQ------ 60
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ +K+L K ++ ++ AG S V V+ + L++G+
Sbjct: 61 -------VAKSLKELEAKERKARPSLELRITQAGLSITKS--QFYVASGVLAGVSLVMGL 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + A+ L G P + L ++R + P+A+D+++
Sbjct: 112 VMSGS-----------PLTAIALAFAAGLGLPQWLLGYLRKRRIARFVLELPNAMDVIVR 160
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++SG+ + LR +A P+ E + + + A + R +
Sbjct: 161 GIKSGLPVGDCLRIIAR---EAPEPVRTEFRALVESQAVGVSLSEAATKLFERMPVSEAN 217
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG--PKLTVPMIIFFLPVL 310
+ + G ++ ++L L R R M + A S+ + + F+ +
Sbjct: 218 FFAIVIGIQAKSGGNLSEALGNLSRVLRDRRRMADKVSAMSMEARASAAIIASLPFVVAV 277
Query: 311 ILVIIGPAILSIIDT 325
+ P +S++ T
Sbjct: 278 LCYFSSPDYISLLWT 292
>gi|163856391|ref|YP_001630689.1| hypothetical protein Bpet2080 [Bordetella petrii DSM 12804]
gi|163260119|emb|CAP42420.1| putative membrane protein [Bordetella petrii]
Length = 290
Score = 98.7 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 7/234 (2%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + + + + ++L G + L + + +P
Sbjct: 59 LLSWRLRDALAHRLAQTGLPPAVTAAHAAAAVAGAAACGAFLAGGLAWWLGTAVAWP--- 115
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A + P W S + +R+ I R P LD++ +C+ESG+ + AL++ A
Sbjct: 116 --AAGLAGALFMGGWPVAWASRRIGRRRQRIGRELPFVLDMMTLCIESGLGLHGALQQAA 173
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ G PL +E+ +A++ R A + +R VR+ AL Q+D G S+
Sbjct: 174 QH--GPPGPLRQELHHALADMRAGMPRAAALKALADRADSPAVRSWIAALTQADSLGMSL 231
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G LR ++ R++R AEK A K+ +P+I P +V+ P + +
Sbjct: 232 GAVLRGHAAQCRTDRFQRAEKLAMEAPVKMLLPLIGCIFPCTFIVLAFPIAVQL 285
>gi|269966899|ref|ZP_06180972.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
gi|269828566|gb|EEZ82827.1| putative tight adherence TadB-related transmembrane protein [Vibrio
alginolyticus 40B]
Length = 322
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/283 (17%), Positives = 102/283 (36%), Gaps = 23/283 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
K V ++ I R + + S LR K+L + L + ++ KL A
Sbjct: 30 KKVKHKQLIKRIHESHKHIDQESISLLRENSLKNLSPLERW--LVRFSLFDSFKKKLELA 87
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G +S I L + + + F + + + +
Sbjct: 88 GIHMGFSRFIFLTFLGGTAVGLFL--------------FLFGQVWYLCAGVAFACWVSVY 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+I + R + P+ALD++ +++G I Q E S PL E + T
Sbjct: 134 FYIQKRIADRLMKFEEQLPEALDIIKRVLQAGQPITQGF---GEVGREVSAPLGPEFMNT 190
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L++ + ++A RT + + A++ G ++ +++ L R+ +
Sbjct: 191 FNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKL 250
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ K S +++ ++ P + VII P + ++ T
Sbjct: 251 ARKIKTISAESRMSA-WVLVLAPFGLYVIISLVRPEYIELLHT 292
>gi|259417689|ref|ZP_05741608.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
gi|259346595|gb|EEW58409.1| type II secretion system protein [Silicibacter sp. TrichCH4B]
Length = 322
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 106/292 (36%), Gaps = 28/292 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + + G S+ + ++ +LR
Sbjct: 8 LIYGLIFIGVLVLVEGIYLVAFGKS------ISLNSRVNRRLEMLEKGGNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L N ++I + + K + A + + + +I +L +
Sbjct: 62 EMQQHL-------NSQSIPLYSLLAEKAQKA---------AIAFTPVQLIMIMGVLCAVA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + ++V ++IG W+++ +KR + ++ PD ++L++ +
Sbjct: 106 FVGLSIGTQAALPVKVLGSVIIGVGAVF---FWVNSKAKKRMAKLEEQLPDGVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL+ E + E S+ + A + R M +R
Sbjct: 163 RVGHPFSSAVQIVAKEVDD---PLATEFGIIADECSYGRDVGEALKEMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
A+ + G ++ + L L R+ + KA + + + + F
Sbjct: 220 AVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGF 271
>gi|317122044|ref|YP_004102047.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592024|gb|ADU51320.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 401
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 51/315 (16%), Positives = 106/315 (33%), Gaps = 24/315 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPS--LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
V + + + ++ + +R+++V + L + A
Sbjct: 73 MVLLLVFAGSTYVAWGLLRAWEGWQGARVARRLEAVHRHSRQRGLRLAPMLVMEEAQPGP 132
Query: 73 RTRDSKSLRNFV-KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R S + + L+ + + KL A R + +
Sbjct: 133 REGRSWRRQLVEQAEARLRGAPWLDGVQRKLNRARLRWR--------------AVEFLAL 178
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
L+ R + G AP +++ ++R + PDAL L+
Sbjct: 179 QAAAGVAGGLVGLALGGRWWLAVAGSVAGMLAPDAYVARRYRQRLQAFDAQLPDALTLMA 238
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++SG S QA VA ++ P++EE + E + A N +R +
Sbjct: 239 NALKSGYSFLQAADVVAREM---PAPIAEEFGWLVKETRVNIPLEDALANLLDRVPSPDL 295
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
A++ + G ++ L R ++ + + + +L+ I+ LPV +
Sbjct: 296 DLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQGRLSG-WIVGSLPVAL 354
Query: 312 LVI---IGPAILSII 323
LV+ + PA L +
Sbjct: 355 LVLLSAMNPAYLQPL 369
>gi|28899185|ref|NP_798790.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836794|ref|ZP_01989461.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|260361576|ref|ZP_05774603.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
gi|260876733|ref|ZP_05889088.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|260898189|ref|ZP_05906685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|260900404|ref|ZP_05908799.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|28807409|dbj|BAC60674.1| putative tight adherence TadB-related transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749940|gb|EDM60685.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|308089098|gb|EFO38793.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|308091412|gb|EFO41107.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|308109112|gb|EFO46652.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308114015|gb|EFO51555.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
Length = 322
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 23/283 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
K V ++ I R + + S LR K+L + L + E+ KL A
Sbjct: 30 KKVKHKQLIKRIHESHKHIDQESISLLRENSLKNLSPLERW--LVRFSLFESFKKKLELA 87
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G +S I V + L+ Y + + + +
Sbjct: 88 GISMGFSRVIFFTFLSGVAVGLLL--------------YLWGQVWYLCAGVAVACWVSAY 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + R + P+ALD++ +++G I QA E S PL E L T
Sbjct: 134 FYLQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAF---GEVGREVSAPLGPEFLNT 190
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L++ + ++A RT + + A++ G ++ +++ L R+ +
Sbjct: 191 FNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKL 250
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ K S +++ ++ P + VII P + ++ T
Sbjct: 251 ARKIKTISAESRMSA-WVLVLAPFALYVIISLVRPEYIELLHT 292
>gi|264678229|ref|YP_003278136.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262208742|gb|ACY32840.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 329
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/308 (15%), Positives = 119/308 (38%), Gaps = 19/308 (6%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
V I + AV++ + K+ KS +R R + +++ +S ++L S
Sbjct: 10 VLVIIGLVFVAVLLLLEALHTIWKQYKSPEAKRLERRLRALSAADDNSNPTKLVKERVLS 69
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
++++ L+ + + + +G + L+LG +F
Sbjct: 70 DMPRMQRV-LQTMPRAHQLDRFIVQSGLD--------------WTVSGLLLGSAILFALG 114
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L + + +L V P +++ R ++R P+ALDL+ + +G +
Sbjct: 115 MLTTMMLRQPMELGVLSSLVLGSLPWLFLQRKRLLRLKRMERQLPEALDLIARALRAGHA 174
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+L+ E++ + P+++E L E+++ + Q A N R + +R A++
Sbjct: 175 FSASLQMAGEEL---TEPIADEFRLVHDEINYGTSLQQALTNLGERVPITDLRYFIVAVL 231
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
G ++ + L L R + A+ + S +++ + +P + ++
Sbjct: 232 IQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADGRMSA-WFLGLMPFGLAALLNLMN 290
Query: 320 LSIIDTMK 327
+ +
Sbjct: 291 PEFMHPLW 298
>gi|123443825|ref|YP_001007796.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090786|emb|CAL13668.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 274
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 3/211 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L+ ++ ++L++ + LI+ I L + + V +I + P V + N+V
Sbjct: 64 LHNIIYLKLIIAVTILIITAILAAF--DLFSINLKSILIMVTIILIMTLYFPKVIVKNIV 121
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+R S+ R+ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 122 ARRTQSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTKRAEIN 181
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + F + +R AL S +G ++ + L L + R +L+ E+K +
Sbjct: 182 -GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTEEKIS 240
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L KLT+P+ +F L +++++ P IL +I
Sbjct: 241 KLTAKLTIPLFLFILIPFVVLVVSPGILELI 271
>gi|260462612|ref|ZP_05810818.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259031518|gb|EEW32788.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 324
Score = 98.3 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/311 (18%), Positives = 109/311 (35%), Gaps = 30/311 (9%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ + A S+ + + G R + LR+ S
Sbjct: 1 MIPTGQTLLYFIYVLAAASVILAAESFFLSFAG------RRTRAGIINRRLRRLGEDSPA 54
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ S L+ R + +F+ + +G L
Sbjct: 55 EQSLQGLLQERGLTASGDFI--------FGAVALNRLYTQSGITGNP---------LAFA 97
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+FL+ G++ LL + + AVI+ VG P + + KR P
Sbjct: 98 AVFLLAGLVLALMLPLLLGFS---AIVAVIVFLLVGLVLPLMVLRRARNKRIQKFAAQLP 154
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DALD+++ + +G A+ VA ++ PL E + E++F + + A
Sbjct: 155 DALDMIVRSLRAGHPTTVAIGLVAREMPD---PLGTEFGIVSDEITFGLSLEQAVRKLSQ 211
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + + +L + G ++ + L L S R R + + KA S +++ II
Sbjct: 212 RVGFEGLHLLSVSLSIQAKTGGNLTEILANLSSVLRERRKLRMKIKALSAEGRMSA-WII 270
Query: 305 FFLPVLILVII 315
PV++ I+
Sbjct: 271 SLFPVVMFGIL 281
>gi|239917280|ref|YP_002956838.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
gi|281414242|ref|ZP_06245984.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
gi|239838487|gb|ACS30284.1| Flp pilus assembly protein TadC [Micrococcus luteus NCTC 2665]
Length = 313
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 103/289 (35%), Gaps = 6/289 (2%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
V P LE+R++ I + + + ++ R + +
Sbjct: 24 VTQPVGWRPSLEQRVEPQL-RHHIPASRLLEEERAGASPWGTWGRILDPVVQAGVGWVQR 82
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ KL AAG + +++ + + P V
Sbjct: 83 ISPGGAALDRKLAAAGL--AVTSTDFRAQQVLSAAAGAAVAAVLALSLTVTGRVPVITGV 140
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
VI G GF +S V++R+ +I +P +L + V +G S AL R+A
Sbjct: 141 ALVIAGGMAGFLLREQLLSLRVRRRREAILSEFPSVAELFALSVGAGESAAGALERIA-- 198
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L+ E T+A++ + A + R Q+ V ++ + GT + D
Sbjct: 199 -GTARGELAGEFRTTLADMRAGASLSAALKAMGRRVQLAPVERFIGGVLIALDRGTPLAD 257
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
LR + R E + A ++ VP++ LP+ ++ + P I
Sbjct: 258 VLRAQAQDVREMGRRELMEAAGRKEIQMMVPLVFGILPLTVIFAVFPGI 306
>gi|218710399|ref|YP_002418020.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
gi|218323418|emb|CAV19595.1| Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
Length = 321
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/310 (15%), Positives = 111/310 (35%), Gaps = 31/310 (10%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+++ + A+++P+ G K + R ++ + + S L+
Sbjct: 8 LGLLFIAVLFISQALLLPAAGKKAKHKELS--------RRLKETQRNIDEESLSLLKEHY 59
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+K L +KL + + L AG R S +L +
Sbjct: 60 NKDLSPLDRKLIVIPYF--AGLKRMLELAGIRVSLSR--------------FLLIVALCG 103
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L+ Q + + +++ N V R + + P+ALD++ +++
Sbjct: 104 VSLTLISIMTQQEWFISLTAFIAVWVVAYLYVQNRVSYRMARFEEQLPEALDIIRRALQA 163
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G + Q+ V E++ P+ E T L++ + ++A R + +
Sbjct: 164 GQPLIQSFNEVGEELPD---PIGAEFKNTYNLLNYGYDLRLAILQMAERVPTVSMLAFSS 220
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII- 315
A++ G ++ ++L+ + RS +E + K S +L+ I+ P + +
Sbjct: 221 AVMLQKETGGNLSENLQKVSEVLRSRFKLERKIKTLSAESRLSA-WILTLSPFGLFFALK 279
Query: 316 --GPAILSII 323
P + +
Sbjct: 280 VANPDYIEPL 289
>gi|269960463|ref|ZP_06174835.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834540|gb|EEZ88627.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 322
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/283 (17%), Positives = 108/283 (38%), Gaps = 23/283 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
K V ++ I R Q + S LR K L + L + + + KL A
Sbjct: 30 KKVKHKQLIQRIQDSHKHIDQESISLLRENSLKHLSPLERW--LVNFSLFDGLKKKLELA 87
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G ++ L + + + ++ I+ + + + + A
Sbjct: 88 GISMGFT--RFLFLSFLAGVAVGLVIFIFGQEW------------YMCVGVTVACWVAIY 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ ++ R + P+ALD++ +++G I QA V ++ S PL E L T
Sbjct: 134 FYLQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAFGEVGNEM---SAPLGPEFLNT 190
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L++ + ++A RT + + A++ G ++ +++ L R+ +
Sbjct: 191 FNMLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSQILRARFKL 250
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ K S +++ ++ P + VII P + ++ T
Sbjct: 251 ARKIKTISAESRMSA-WVLVLAPFGLYVIISLIRPEYIELLHT 292
>gi|299532600|ref|ZP_07045989.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719403|gb|EFI60371.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 329
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/308 (15%), Positives = 121/308 (39%), Gaps = 19/308 (6%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
V I + AV++ + K+ KS +R R + +++ +S ++L + S
Sbjct: 10 VLVIIGLVFVAVLLLLEALHTIWKQYKSPEAKRLERRLRALSAADDNSNPTKLVKERTLS 69
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
++++ L+ + + + +G + L+LG +F
Sbjct: 70 DMPRMQRV-LQTMPRAHQLDRFIVQSGLD--------------WTVSGLLLGSATLFALG 114
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L + + +L+G P +++ +R ++R P+ALDL+ + +G +
Sbjct: 115 MLTTIMLRQPMELGVLLGLALASFPWLFLQRKRLQRLKRMERQLPEALDLIARALRAGHA 174
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+L+ E++ + P++ E L E+++ + A N R + +R A++
Sbjct: 175 FSASLQMAGEEL---TEPIAGEFRLVHDEINYGTSLHQALTNLGERVPITDLRYFIVAVL 231
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
G ++ + L L R + A+ + S +++ I+ +P + ++
Sbjct: 232 IQRESGGNLTEMLSNLSRLIRERLKLHAKVRVLSADGRMSA-WILGLMPFGLAALLNLMN 290
Query: 320 LSIIDTMK 327
+ +
Sbjct: 291 PEFMHPLW 298
>gi|307726379|ref|YP_003909592.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307586904|gb|ADN60301.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 327
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/318 (15%), Positives = 104/318 (32%), Gaps = 26/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ A A +++ I + R + +R +
Sbjct: 1 MNPIFYAFAFLLFIAVVLGIEGLYQWWNSHHGPAAR-----RLDQRIRALSAGAQVNGER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R S + + + + +G ++ L +V + L
Sbjct: 56 LSILKERMLSSSAPVHALM--MRVPRIHLLDRIIVQSGL--NLTVGRLATHSVVAGVAVL 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ P L + +L F P++ + KR ++R P+A D
Sbjct: 112 LAASF----------SPVPLPMLVTVLAAAGAFAFPTLRMLRARSKRLRVLERQLPEAAD 161
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + +G S A+ + + P E + E+++ A N R +
Sbjct: 162 MISRALRAGHSFSSAIGMLGNEFAE---PTGGEFRIVFDEINYGVTLNEALLNLATRVPV 218
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ II LP
Sbjct: 219 SDLRYFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEGRLSA-WIIGLLP 277
Query: 309 VLILV---IIGPAILSII 323
++ P+ LS++
Sbjct: 278 FAAAGAMNLLNPSFLSVL 295
>gi|163745842|ref|ZP_02153201.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161380587|gb|EDQ04997.1| type II secretion system protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 320
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 104/300 (34%), Gaps = 28/300 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + + G S+ + +++ +LR
Sbjct: 6 IIYGLIFIGVLVLVEGLYLVAFGKS------ISLNSRVNRRLEMLEKGARREEVLDKLRK 59
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + L R++ + +L++ + L
Sbjct: 60 EMQQHMNAKSIPLYSLLSE--------------RAQKAAIAFTPQQLLMIMAGLAAVAFL 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + V+ +G V F W+S+ KR S I+ PDA++L++ +
Sbjct: 106 GLTIGTDTSVSVRALMSLVMGVGAVFF-----WVSHKAGKRMSMIEEQLPDAVELMVRSL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ V+++I PL+ E + E ++ + A ++ R M +R
Sbjct: 161 RVGHPFSNAISIVSKEIQD---PLASEFGVIADEAAYGRDLGEALKDMAERLDMQDLRFL 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + K + + F ++VI
Sbjct: 218 AVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGKFLSGFPLAALVVI 277
>gi|28493158|ref|NP_787319.1| hypothetical protein TWT191 [Tropheryma whipplei str. Twist]
gi|28476198|gb|AAO44288.1| unknown [Tropheryma whipplei str. Twist]
Length = 298
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/307 (14%), Positives = 102/307 (33%), Gaps = 16/307 (5%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
++A+++ AV++ I ++ +R+
Sbjct: 4 QIALSVLFAVTLGCGIASLTFMLSPVSTFRRRLTPYLSGLSQDMCFSFRRPLYRELFGVF 63
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R L F + + I N+ + S+ + ++ + + +
Sbjct: 64 RI----YLNRFYRTQPSGKLAGLLEISNR--------DQSVVDFRITQIAISALLTGIFW 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + A + +C + + V+KR+ I P A + L +
Sbjct: 112 VLFCLLLFSGQVNIVFGLLAPAVFAGSFWCIENN-LRRYVKKRKQKILNEMPSAFEFLSL 170
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V +G + A++R+ S E+ + +S + + + + +
Sbjct: 171 SVSAGEGVLDAIKRICFI---SKGEFSIELKKVLIGVSSGDTLERCLKRMAAKLNIVSID 227
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
A +I + GT + D L E R+ + ++A + P++ F LPV IL
Sbjct: 228 RAVSQIITAIERGTPLADILIKQAKEARNATRVALIEQAGKKEIAMMFPLVFFILPVTIL 287
Query: 313 VIIGPAI 319
I P I
Sbjct: 288 FAIFPGI 294
>gi|254464012|ref|ZP_05077423.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
gi|206684920|gb|EDZ45402.1| type II secretion system protein [Rhodobacterales bacterium Y4I]
Length = 322
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/302 (14%), Positives = 102/302 (33%), Gaps = 28/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + +L+ + + + G S+ + ++ +LR
Sbjct: 8 LIYGLIFFGVLALVEGLYLFTFGKS------ISLNSRVNRRLEMMEKGSNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ L R++ + +L++ + L
Sbjct: 62 ELGQHAKSQSIPLYSLLSE--------------RAQKAAIAFSPKQLILIMAGLAALAFV 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
P ++ +I +G V F W++ KR + I+ PDA++L++ +
Sbjct: 108 GLSIGTSAPLPVRILGSVIIGVGAVFF-----WVNKKAAKRMAMIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA ++ PL+ E + E ++ + A + R M +R
Sbjct: 163 RVGHPFTSAVQIVANEVED---PLATEFGIISDECAYGRDIGEALKEMAERLDMQDMRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + + + + F + I
Sbjct: 220 AVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGFPLFCLAGI 279
Query: 315 IG 316
+
Sbjct: 280 LV 281
>gi|260768630|ref|ZP_05877564.1| type II secretion system protein [Vibrio furnissii CIP 102972]
gi|260616660|gb|EEX41845.1| type II secretion system protein [Vibrio furnissii CIP 102972]
Length = 296
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/269 (16%), Positives = 98/269 (36%), Gaps = 4/269 (1%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+T S + + + + K +V +R AG+ S +
Sbjct: 31 SVTPSSASKLFSYSKESVLRHSQKWWGKSKQDHHKTLSQVVLNMRQAGYISGRQ----QI 86
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ L + + + G L + L +G WI +R
Sbjct: 87 LCLFKMFLVWSGLFLILTGQQYLFSSSIERTFLYYALFMAIGALVSIRWIRMQANRRAKI 146
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I A+ ++ I + G+S+++ L+ ++ + +++++ L IA + NR+
Sbjct: 147 IDEEMLTAVHMMAILWQVGLSLERLLKTYHQEASDLTPEMNKDIALIIARIDAGQNREWV 206
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F + T ++ L Q G + S + L + + ++K + K+
Sbjct: 207 FRDMATLTLSTGFQDLLSMLSQGSETGGGLKKSFQSLADLLYERKRVALQEKVTKMSGKI 266
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+V M+ P L +++ GPA L+++
Sbjct: 267 SVTMMALMFPALFIILGGPAALALMAAFG 295
>gi|289706419|ref|ZP_06502777.1| type II secretion system F domain protein [Micrococcus luteus SK58]
gi|289556914|gb|EFD50247.1| type II secretion system F domain protein [Micrococcus luteus SK58]
Length = 313
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/289 (18%), Positives = 104/289 (35%), Gaps = 6/289 (2%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
V P LE+R++ + I + + + ++ R + +
Sbjct: 24 VTQPVGWRPSLEQRVEP-QLRHHIPASRLLEEERAGASPWGAWGRILDPVVQAGVGWVQR 82
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ KL AAG + +++ + + P V
Sbjct: 83 ISPGGVALDRKLAAAGL--AVTSTDFRAQQVLSAAAGAAVAAVLALSLTVTGRVPVITGV 140
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
VI G GF +S ++R+ +I +P +L + V +G S AL R+A
Sbjct: 141 ALVIAGGMAGFLLRDQLLSLRARRRREAILSEFPSVAELFALSVGAGESAAGALERIA-- 198
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L+ E +T+A++ + A + R Q+ V ++ + GT + D
Sbjct: 199 -GTARGELAGEFRVTLADMRAGASLSAALKAMGRRVQLAPVERFIGGVLIALDRGTPLAD 257
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
LR + R E + A ++ VP++ LP+ ++ + P I
Sbjct: 258 VLRAQAQDVREMGRRELMEAAGRKEIQMMVPLVFGILPLTVIFAVFPGI 306
>gi|328474277|gb|EGF45082.1| putative tight adherence TadB-like transmembrane protein [Vibrio
parahaemolyticus 10329]
Length = 322
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 23/283 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
K V ++ I R + + S LR K+L + L + E+ KL A
Sbjct: 30 KKVKHKQLIKRIHESHKHIDQESISLLRENSLKNLSPLERW--LVRFSLFESFKKKLELA 87
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G +S I V + L+ Y + + + +
Sbjct: 88 GISMGFSRVIFFTFLSGVAVGLLL--------------YLWGQVWYLCAGVAVACWASAY 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + R + P+ALD++ +++G I QA E S PL E L T
Sbjct: 134 FYLQKKIADRLMKFEEQLPEALDIIKRVLQAGQPITQAF---GEVGREVSAPLGPEFLNT 190
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L++ + ++A RT + + A++ G ++ +++ L R+ +
Sbjct: 191 FNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSHILRARFKL 250
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ K S +++ ++ P + VII P + ++ T
Sbjct: 251 ARKIKTISAESRMSA-WVLVLAPFALYVIISLVRPEYIELLHT 292
>gi|146276357|ref|YP_001166516.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
gi|145554598|gb|ABP69211.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17025]
Length = 322
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/302 (17%), Positives = 107/302 (35%), Gaps = 29/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ L+ + + G S+ + ++ +LR
Sbjct: 8 IIYILIFVAVLLLVEGIYLTVFGKS------ISLNSRVSRRLALLEKNQNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S+ + N + I + + +K + A + I +L +
Sbjct: 62 EMSQHM-------NARGIPLYAVLASKAQKANI---------AFSPKALVAIMALLSAVA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G +RV I +G W++N +KR + I+ PDA++L++ +
Sbjct: 106 YMGLTIGTAASPAVRVAVAIFMGVGAVYV---WVNNKAKKRMALIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL E + E ++ + F R +R
Sbjct: 163 RVGHPFSSAIQIVAKEVPD---PLGTEFGVIADEAAYGRDVAECIRAFAERMDSQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L RS + KA + K + + P++ LV+
Sbjct: 220 AVAVNIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSAFPIVALVM 278
Query: 315 IG 316
I
Sbjct: 279 IS 280
>gi|255263835|ref|ZP_05343177.1| type II secretion system protein [Thalassiobium sp. R2A62]
gi|255106170|gb|EET48844.1| type II secretion system protein [Thalassiobium sp. R2A62]
Length = 322
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/302 (16%), Positives = 111/302 (36%), Gaps = 29/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ +++ +++ + + G S+ + ++ +LR
Sbjct: 8 LIYGLIFLAVLAIVEGIYLTVFGKS------ISLNNRVNRRLEMLEKGGGREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S+ + N K + + + K + A + +I L ++
Sbjct: 62 EMSQHM-------NSKGVPIYSLLAAKAQKANIAFSPP---------QLIMIMFGLSVVA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+R G +L+G G W++N +KR + I+ PDA++L++ +
Sbjct: 106 FILLTVGTGASAPIRAGVSLLMGVGGVFI---WVNNKAKKRLALIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ VA+++ PL EM + E ++ + A + R +M +R
Sbjct: 163 RVGHPFTSAVAIVAKEVPD---PLGSEMGVISDEAAYGRDVGEALKAMAERLEMQDMRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + K + M + P+ LV+
Sbjct: 220 AVAVTIQQQAGGNLAEILHGLAQVIRARFKLFRRVKAITAEAKWSG-MFLSLFPLGALVM 278
Query: 315 IG 316
I
Sbjct: 279 IN 280
>gi|329943876|ref|ZP_08292147.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328531582|gb|EGF58418.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 292
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 69/313 (22%), Positives = 129/313 (41%), Gaps = 27/313 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ A+ + + V RM S R + ++ + S +K S
Sbjct: 1 MYPVSILTALAAFILVLCAAQGV------------RMVSYDAARSLSMEENVASQEKGSL 48
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+L R + + ++L+ AG+ + + + R ++
Sbjct: 49 VIKLVDRAGLRFSRLLS--GAYGPRRRARLESRLKRAGYPAGLTQRKFI-QRETGFVVLG 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ +++ F D+ + + +G + VW++N +R I R PD LD
Sbjct: 106 IIVLLFCFLIDE---------LIIGVGLGLLLAFWMQVWLTNTGLRRSQQIDRDLPDFLD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + V SG+S A+ RV+ G PL+EEM I + R+ AF + ++
Sbjct: 157 VLSVTVRSGMSFRPAVERVSSFHEG---PLAEEMRGAIYSMRLGVTRRDAFIAARDNSRS 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V A +Q++ GT + D+L + SE R ER + + AA PK+ + + LP
Sbjct: 214 ENVAIFVSAFLQAEELGTPLADALVDISSEIRRERAQQVRRAAARAQPKIAIVVTTMILP 273
Query: 309 VLILVIIGPAILS 321
+++I+G IL
Sbjct: 274 ATLILILGSMILM 286
>gi|295836764|ref|ZP_06823697.1| integral membrane protein [Streptomyces sp. SPB74]
gi|295826195|gb|EFG64730.1| integral membrane protein [Streptomyces sp. SPB74]
Length = 300
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L E ++ AG +L+ R V + L++ I+ LL
Sbjct: 68 LRLMGARRVEAKRRRIDMAGNPGGLTLDRYAARRAVYGVFGLLMAAIFASYGSPLLALLA 127
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
I V++R++ I R PD LD+L + V +G+ QAL R
Sbjct: 128 LAFGLVAA----------DATIWQAVRERRAVIDRTLPDFLDVLAVVVSAGLGFRQALER 177
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VAE G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+
Sbjct: 178 VAEKYEG---PWADELRITLRQMDMGVSRRQAFDELRRRNNSEQVAQFVSALQQGEELGS 234
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I ++L + ++ R +A ++AA PK T+ ++F LP +++I L
Sbjct: 235 PIAETLIQIANDMRRTDAQQARRRAAKTIPKATMATLVFMLPATMILIATGMFLG 289
>gi|254510017|ref|ZP_05122084.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
gi|221533728|gb|EEE36716.1| type II/IV secretion system protein, TadC subfamily
[Rhodobacteraceae bacterium KLH11]
Length = 322
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/306 (15%), Positives = 108/306 (35%), Gaps = 28/306 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E + + V +F+L+ + + + G S+ + ++
Sbjct: 4 PVEALIYVVIFVGVFALVEGIYLVAFGKS------ISLNSRVNRRLDMIDKGVGREQVLE 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+LR + +++ L + + +L++ + +
Sbjct: 58 QLRKEMQQHMKSQSIPLYSLLADKA--------------QKAAIAFTPRQLIMIMALVSG 103
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ E ++ + I IG V W++N +KR + I+ PDA++L+
Sbjct: 104 LVFMALSIATATEITLRIALSIAIGIGAV-----FTWVNNKAKKRMALIEEQLPDAVELM 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G +++ VA +I PL+ E + E ++ + A ++ R M
Sbjct: 159 VRSLRVGNPFVSSIQIVANEIED---PLATEFGIISDESAYGRDVGEALKDMAERLDMQD 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R A+ + G ++ D L L R+ + A + K + + F
Sbjct: 216 LRFLAVAVSIQQQSGGNLADILAGLAKVIRARFRLFRRVNAITAEAKWSGKFLSGFPVAC 275
Query: 311 ILVIIG 316
++ I+
Sbjct: 276 LVFILV 281
>gi|145219379|ref|YP_001130088.1| type II secretion system protein [Prosthecochloris vibrioformis DSM
265]
gi|145205543|gb|ABP36586.1| type II secretion system protein [Chlorobium phaeovibrioides DSM
265]
Length = 322
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/316 (14%), Positives = 101/316 (31%), Gaps = 39/316 (12%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLG-----SGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ L S ++R+++V + +Q
Sbjct: 4 YLIPFFAFEAVLLLTVLFFWAWARYLSTDSKTKKQRLRTVHEAVHSIG-PNPGGMQTTRN 62
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L + NL +L I+ +
Sbjct: 63 DSALELWLRSRFATYGSLENLVLRAHSPLTTRRLL---------------------ILMI 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + + + PF + A + G P +W+ L +R+ + + P+ALD
Sbjct: 102 ALFTVVVALGLQNHNNPFLILALAFCIAGS-----PVLWLLKLADRRRRAFEDKLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + +G S+ A+ V ++ G P+ E + E+ F + A R Q
Sbjct: 157 HISRALRAGHSLAPAMGMVGQEFGD---PIGYEFKIVFDEIGFGIPFKEAIGRLAERVQS 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + +L G ++ + L R + + + S + + ++ +P
Sbjct: 214 NDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRILSSEGRASG-WVLGSMP 272
Query: 309 VL---ILVIIGPAILS 321
+ +L +I P ++
Sbjct: 273 FVLMAVLSLINPEYIA 288
>gi|325109818|ref|YP_004270886.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970086|gb|ADY60864.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 319
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/266 (18%), Positives = 100/266 (37%), Gaps = 11/266 (4%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ +VA+ E L + ++ R+R R K + +++ L
Sbjct: 20 LSAVALVAEWLLTDRNRIEKRLREEGRVRLRQKAHQSRLFKDWKVAEDGAEDSSARWLER 79
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
++ + +L+ +W G LL P L + FC P
Sbjct: 80 WQLFADQAGLNWNGWKLLQL-------SLWSAGLVALLVIPLHLGTAWSAGLSLAAFCIP 132
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
SV+ +R ++++ P+ DL+ +ESG +I A + V+ GG P+++E
Sbjct: 133 SVYAVQRRNQRINTLRDQLPETFDLMSRAIESGQTISGAFQLVSTQCGG---PIAKEFQH 189
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + ++ + RT + ++ ALI + G D L+ L R+
Sbjct: 190 CCQQQNLGLPYEITLRDLARRTGVMELQMFAVALIVQRQAGGDPSDVLKNLAEAVRNRIK 249
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + KA + + ++ LP +
Sbjct: 250 LAMKVKAITSEGRAQA-WVLSALPFV 274
>gi|269836552|ref|YP_003318780.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
gi|269785815|gb|ACZ37958.1| type II secretion system protein [Sphaerobacter thermophilus DSM
20745]
Length = 326
Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 16/286 (5%)
Query: 41 LEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN 100
L R ++VA E E R ++ SL+ + S R L V ++ ++ E +
Sbjct: 23 LVSREQAVAPELEE-RLERFASLEPLATESLSGARTPNVLAQQVDRV-VQGKTFSEAVAL 80
Query: 101 KLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
L A R ++ L+VR + L + +++ +G
Sbjct: 81 LLARANIR--MTVGEFLIVR-----AGSASFGFLLGFLLGRGITQPVLGLLVGLVVALIG 133
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ P +IS ++R ++ D + L+ + +G S+ Q + VA P+SE
Sbjct: 134 WMVPHWYISVRARRRTNAFVNQLGDTITLMANSLRAGYSLLQTMELVAR---ETPPPMSE 190
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
E + E+ Q A + R + + A+ G ++ L V+ R
Sbjct: 191 EFRRVVREVGLGIPTQEAMSHLLRRVPSEDLDLLITAINVQHEVGGNLAQILDVIGETIR 250
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
++ E + + ++ II LPV L+L++I P + +
Sbjct: 251 ERVRIKGEIRVLTAQQSISG-YIISALPVGLALLLMVINPGYVMGM 295
>gi|297571776|ref|YP_003697550.1| type II secretion system protein F [Arcanobacterium haemolyticum
DSM 20595]
gi|296932123|gb|ADH92931.1| Type II secretion system F domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 291
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/313 (15%), Positives = 106/313 (33%), Gaps = 23/313 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPS-LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ I I I A+++ L R+ S A R++ ++
Sbjct: 1 MIAYIVVGCVIGGGIAAIIVAFISAPVSLTTRIISHAASRDVRTRRM-----------PY 49
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R R + V++L + V + G S++ + ++ I+
Sbjct: 50 RVRLAGYAAGVVERLGSTNVSVARRL-------GVVGHGSVSAFRLSQIQWA-GGGIIAG 101
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ +P + V G G ++ + + PD ++L+ +
Sbjct: 102 ALSGTSLVIRGFPALTVLATVGFGGVCGALWADYRLTTAARATSRILTAQLPDVIELIAL 161
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V +G + A+ R + S PL E + T+A + + A + R V
Sbjct: 162 AVSAGEPVRPAIERA---VRSGSGPLIEHLRTTLAHVHAGKSLPAALSDLSVRAGNQNVS 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
T +LI + G + +L + R + ++ + +P++ LP+ ++
Sbjct: 219 RFTDSLITAMEQGGGLAQTLHNQARDARDAARRDLLEEGGKAEISMMIPVVFLILPITVI 278
Query: 313 VIIGPAILSIIDT 325
I PA+ +
Sbjct: 279 FTIFPALSQLTFM 291
>gi|303238717|ref|ZP_07325250.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302593836|gb|EFL63551.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 292
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/198 (21%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I +L ++ L P +++ ++ V+KR++S++ +PD
Sbjct: 94 IAFVLLAAFLLSLFGLSSKPDVGYGFFSLIVLIAIAFLTDNELNEKVKKRRTSMQLDFPD 153
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+ L + + +G+++ +A ++ D ++ L EE+ + +A++ + A+E+F R
Sbjct: 154 FLNKLTLLINAGMTVQRAWEKIVTDNK-KNSVLYEELSIAVADIRAGKSEMSAYEDFAKR 212
Query: 246 TQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
++ + ++Q+ + G T + LR+ SE R A + K+ PM+I
Sbjct: 213 CRIPEITKFVSVVLQNIKKGNTELVSILRLQASECWEMRKRAATRLGEEASTKMLFPMMI 272
Query: 305 FFLPVLILVIIGPAILSI 322
F+ +LI+V + PAI ++
Sbjct: 273 MFVAILIIVTV-PAIFAM 289
>gi|328884729|emb|CCA57968.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 295
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 13/274 (4%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
A R + + + D +R L L + ++ AG
Sbjct: 24 RADARLPDDLRLALEVGATRTGAVDSAVDRLGMRWSPAVLRLMGPKRVNAVRRRIDLAGN 83
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+++ R + G L + +L+ G V
Sbjct: 84 PGGLTIDRYGARR----------AVYGFLGVLGGLLMLSRGSFLVAVLLFAFGAFWTEVG 133
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I + V+ R+ I+R PD LD+L + V +G+ QAL RVAE G P ++E+ +T+
Sbjct: 134 IWSAVRIRKDQIERTLPDFLDVLAVVVSAGLGFRQALERVAEKYEG---PWADELRITLR 190
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ +R+ AF+ R + V AL Q + G I ++L + ++ R A
Sbjct: 191 QMDMGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGAPIVETLIQIANDMRRTDAQNA 250
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+KAA PK T+ + +P ++++ L
Sbjct: 251 RRKAAKAVPKATMVITTLMVPATMILLGAGLFLG 284
>gi|125973852|ref|YP_001037762.1| type II secretion system protein [Clostridium thermocellum ATCC
27405]
gi|125714077|gb|ABN52569.1| type II secretion system protein [Clostridium thermocellum ATCC
27405]
Length = 289
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ I + +S V +R+ SI+ +PD L+ +++ V +G+++ +A +
Sbjct: 111 VATLVFGIAVTAAVPYFMDRELSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEK 170
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG- 265
D + L +E+ +A++ + AFE+F NR ++ + AL+Q+ G
Sbjct: 171 SVTD-SEKDTVLYQELRTVLADIRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGN 229
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ LR+ +E R A++ K+ PM++ F+ V+++V PA+L++ +
Sbjct: 230 AEMVSILRLQAAECWEMRKHAAKRLGEEASTKMLFPMMLMFIAVILIVA-TPAVLTLTGS 288
Query: 326 M 326
M
Sbjct: 289 M 289
>gi|86137997|ref|ZP_01056573.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
gi|85825589|gb|EAQ45788.1| type II/IV secretion system protein, TadC subfamily protein
[Roseobacter sp. MED193]
Length = 322
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/299 (17%), Positives = 110/299 (36%), Gaps = 29/299 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I V + L+ + + + G + +++ ++K S+ ++ +
Sbjct: 9 IYILIFVGVVVLVEGIYLVAFGKS----------IRLNNQVNRRLEMMEKGSSREQVLEQ 58
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
K L K + + K A + +I L +
Sbjct: 59 LRKELGQHGKSKTIPLYSILAEKAQKAAIAFSPKQL------------MMIMAGLATLAF 106
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
FG P LRV A I+IG G W++ KR + I+ PDA++L++ +
Sbjct: 107 FGLSIGTNTPLPLRVLASIVIGVGGVF---FWVNRKAGKRMALIEEQLPDAVELMVRSLR 163
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G + ++ VA +I PL+ E + E ++ + A + R + +R +
Sbjct: 164 VGHPFNSTVQIVAHEIED---PLATEFGIIADECAYGRDIGEALKEMAERLDIQDLRFLS 220
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + + + + P+L L+
Sbjct: 221 VAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGK-FLSAFPLLALIG 278
>gi|260914307|ref|ZP_05920776.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
gi|260631408|gb|EEX49590.1| Flp pilus assembly protein TadC [Pasteurella dagmatis ATCC 43325]
Length = 285
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 1/196 (0%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
LI+ ++ Y L + A LI + P + +++++ + I P
Sbjct: 86 LLIMLVLVGLYYLYSLAQGSADWLTATALILVLTILIPGILTNSILKSKIKKIMVDLPGF 145
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+DL+ + V++GISID AL++VA D + L+ ML I + A ++
Sbjct: 146 IDLVAVNVQTGISIDAALKQVAIDFKKLNPDLTYVMLRIIRKSEI-TGLSSALQDLSISL 204
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
VR L QS +G+SI L L ++ R +L+ E+K +L K+++P+I+F
Sbjct: 205 PTTEVRMFCSVLQQSLNFGSSIYSHLIQLSADIRELQLLTIEEKLGTLAAKMSIPLILFI 264
Query: 307 LPVLILVIIGPAILSI 322
+ +I++I+ P I+ +
Sbjct: 265 MFPIIILILAPGIMRV 280
>gi|78186666|ref|YP_374709.1| TadB protein [Chlorobium luteolum DSM 273]
gi|78166568|gb|ABB23666.1| TadB protein [Chlorobium luteolum DSM 273]
Length = 322
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 75/200 (37%), Gaps = 7/200 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + +F + + +++ P +W+S +R+ + P+ALD
Sbjct: 97 LAMTLGLFALVGVPGMLMGINALFILVPAAAIASTPVLWLSRAANRRRRAFGDKLPEALD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + +G S+ A+ + + P+ E E+ F + A +R Q
Sbjct: 157 YISRSMRAGHSLTSAIGMLGTEFRD---PIGHEFKTVFDEIGFGIPFKDAIGELADRVQS 213
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ +L G ++ + L L + R + + + S + + ++ +P
Sbjct: 214 TDLNFFVISLQIQHETGGNLTELLDGLSNTIRQRIKLRGKIRTLSSEGRASA-WVLGSMP 272
Query: 309 VLILVI---IGPAILSIIDT 325
++ I I P +S++ T
Sbjct: 273 FALVAILTLINPGYISVLWT 292
>gi|153834070|ref|ZP_01986737.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
gi|148869625|gb|EDL68615.1| Flp pilus assembly protein TadB [Vibrio harveyi HY01]
Length = 322
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/283 (17%), Positives = 104/283 (36%), Gaps = 23/283 (8%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
K V ++ I R + + S LR K+L + L + + + KL A
Sbjct: 30 KKVKHKQLIKRIHDSHKHIDEESISLLRENSLKNLSPLERW--LVNFSLFDGLKKKLELA 87
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G ++ + L + +I F + + + A
Sbjct: 88 GISMGFTRFLFLSFLAGTAVGLIIFV--------------FGQVWYMCLGVTIACWVAIY 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ ++ R + P+ALD++ +++G I QA E S PL E L T
Sbjct: 134 FYLQKMIADRLMKFEEQLPEALDIIKRVLQAGQPITQAF---GEVGREVSAPLGPEFLNT 190
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L++ + ++A RT + + A++ G ++ +++ L R+ +
Sbjct: 191 FNLLNYGYDLRLAIMQMSERTPTVSMLAFSSAVLLQKETGGNLVENIEKLSRILRARFKL 250
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ K S +++ ++ P + +II P + ++ T
Sbjct: 251 ARKIKTISAESRMSA-WVLVLAPFGLYIIISLVRPDYIELLHT 292
>gi|84516637|ref|ZP_01003996.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
SKA53]
gi|84509673|gb|EAQ06131.1| putative Flp pilus assembly protein TadB [Loktanella vestfoldensis
SKA53]
Length = 320
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/302 (14%), Positives = 107/302 (35%), Gaps = 29/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ +L+ + G S+ + + ++ +LR
Sbjct: 6 IIYILIFVAVLALVQGAYLVIFGKS------ISMDGKVNRRLEMLDKGGNREQVLDQLRK 59
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ +++ ++I + + K + A + ++ ++ +
Sbjct: 60 EMTQHMKS-------QSIPIYSLLATKAQKANI---------AFSPTQIMMVMAVVSVAA 103
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ +R+ +L+G G WIS +R + I PDA+DL++ +
Sbjct: 104 FLMLTLFTQVAPPVRILISVLMGVGGVYL---WISRKATQRINLISEQLPDAVDLMVRSL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ A+++ PL E+ + E ++ + + R +R
Sbjct: 161 RVGHPFSSAINIAAKEVPD---PLGTEIGIIADETAYGRDMGETLKAMAERLDNQDLRFL 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ G ++ + L L R+ + KA + K + + + P+L L+
Sbjct: 218 AVAVTIQQSSGGNLAEILDGLSKVIRARFRLFRRVKAITAEAKWSGNL-LSAFPILALIG 276
Query: 315 IG 316
I
Sbjct: 277 IN 278
>gi|144897190|emb|CAM74054.1| pilus assembly protein TadB [Magnetospirillum gryphiswaldense
MSR-1]
Length = 279
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 20/255 (7%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+SL + + +L AG R + VRL + + I ++
Sbjct: 12 APRRRSLHRLQSGEQGRGRRWAGQMREQLMRAGIRMD--------VRLWLGLNVAIAVLV 63
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W+ + +L +GF P + + L ++R + + DALD+++
Sbjct: 64 WLVALGLK-----APPLLGPLLAASLGFGLPRLLVGWLGKRRIARFTTLFADALDIVVRG 118
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ SG+ + + + + ++ PL E L + + + + RT +
Sbjct: 119 LRSGLPLGECMAIIGREVPE---PLGPEFRLVMEGQKLGLSLEESLARAVERTPTADFKY 175
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L + G ++ ++L L R+ + M + KA S + MII LPV++ +
Sbjct: 176 FAIVLGIQQQTGGNLAETLAKLSEVLRARKRMRDKIKAFSSEATASA-MIIGSLPVVVAL 234
Query: 314 II---GPAILSIIDT 325
++ GP + I+ +
Sbjct: 235 LLTAVGPDYIGILFS 249
>gi|318604217|emb|CBY25715.1| type II/IV secretion system protein TadC,associated with Flp pilus
assembly [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 274
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 3/217 (1%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ L+ ++ ++L++ + LI+ I L + + V +I + P V
Sbjct: 58 INLPFILHNIIYLKLIIAVTILIITAILATF--DLFSINLKNILVMVTIILIMTLYFPKV 115
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ N+V KR S+ R+ P +D+ CV+SG++ID +L A+ + LS ML
Sbjct: 116 IVKNIVAKRTKSLLRSLPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVT 175
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A + F + +R AL S +G ++ + L L + R +L+
Sbjct: 176 RRAEIN-GLENAIKEFNQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLV 234
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+K + L KLT+P+ +F L I+++I P++L +I
Sbjct: 235 TEEKISKLTAKLTIPLFLFILIPFIVLVISPSVLELI 271
>gi|218516408|ref|ZP_03513248.1| pilus component protein [Rhizobium etli 8C-3]
Length = 121
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 78/121 (64%), Positives = 97/121 (80%)
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
RV+E++G QS PL+EEM+LT AELSFLP+R+VA EN RTQ++ VR+ TQALIQ+DRYG
Sbjct: 1 RVSEELGEQSPPLAEEMVLTTAELSFLPDRRVALENLATRTQIELVRSVTQALIQADRYG 60
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
T + +LRVL E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 61 TPVAQALRVLAQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVADK 120
Query: 326 M 326
Sbjct: 121 F 121
>gi|254393103|ref|ZP_05008263.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294814750|ref|ZP_06773393.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326443129|ref|ZP_08217863.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
gi|197706750|gb|EDY52562.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294327349|gb|EFG08992.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 295
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 61/305 (20%), Positives = 119/305 (39%), Gaps = 26/305 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A A S++ + V + + R + ++
Sbjct: 4 LLATLLAFSVYGIFLGVRMY-------------RSDARLPGDLALALEVGATRTTAVGSV 50
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
D +R L + + +L AG +++ R V ++ L+
Sbjct: 51 IDRLGVRWAPAVLRAMGPGRVDALRRRLDMAGNPGGMTVDRYAARRAVYSLLGLVAAFSM 110
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + ++ + G V I +++R++ I+R PD LD+L + V
Sbjct: 111 L----------LRGQLALAAFLLVFGLFWTDVIIRVAIRRRRADIERTLPDFLDVLAVVV 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G+ QAL RVAE G P S+E+ +T+ ++ +R+ AF+ R + V
Sbjct: 161 SAGLGFRQALERVAEKYEG---PWSDELRITLRQMDMGVSRRDAFDQLRRRNDSEQVSMF 217
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
AL Q + G I D+L + ++ R A ++AA PK T+ + + LP +++I
Sbjct: 218 VTALQQGEELGAPIVDTLIQIATDMRRTDAQNARREAARAVPKSTLVVTLVMLPATMILI 277
Query: 315 IGPAI 319
+
Sbjct: 278 VVSFY 282
>gi|78186532|ref|YP_374575.1| TadB protein [Chlorobium luteolum DSM 273]
gi|78166434|gb|ABB23532.1| TadB protein [Chlorobium luteolum DSM 273]
Length = 322
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 79/203 (38%), Gaps = 9/203 (4%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I +++ ++ L + V+ G P +W+ L +R + + P+
Sbjct: 96 IMILMSTLFTGVMALGLLRHTHPLLTLVVAAAVAGM--PVLWLMQLADRRLRAFEDKLPE 153
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALD + + +G S+ A+ V ++ G P+ E + E+ F + A R
Sbjct: 154 ALDHISRALRAGHSLAPAMGMVGQEFGE---PIGYEFKIVFDEIGFGIPFKEAIGRLAER 210
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
Q + +L G ++ + L R + + + S + + ++
Sbjct: 211 MQSTDLNFFVISLTIQHETGGNLTELFDGLARTIRHRIKLRGKIRTLSSEGRASG-WVLG 269
Query: 306 FLPVLILV---IIGPAILSIIDT 325
+P ++++ +I P +S++ T
Sbjct: 270 SMPFVLMMVLSLINPEYISLLWT 292
>gi|320531262|ref|ZP_08032241.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136529|gb|EFW28498.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 317
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 50/312 (16%), Positives = 110/312 (35%), Gaps = 8/312 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRK--QQITSLQKDSASS 70
+ ++ I +V+ L R++ + L D ++
Sbjct: 7 ILTGGLAGLTGAVGILSVISALRRRRPTLMARLEPYVHRQPTTSGLLAAPAGLASDGSTV 66
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
S + + +L +++ +L +G S ++ + +++ L+L
Sbjct: 67 VGLLMASTAGALNLGRLMDSLGSSADSVRRRLTRSG--SPLGVDQFRLQQVLWSTTALLL 124
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + ++ G A W+S V +R S I+ PD ++LL
Sbjct: 125 VLAAGGLAALARSVNVPALILLCLMATVAGAAARDWWLSRAVARRLSRIEAQLPDIVELL 184
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ V +G A+ RV G L +E+ T+ ++ A + R
Sbjct: 185 ALAVGAGQGPVPAIERVVALGRG---DLIDELGATLTDIRSGTVLSTALDRMERRVGSVH 241
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V +A+I + GT + D LR ++ R + ++ VP++ LP+
Sbjct: 242 VTRLCEAIIVALERGTPLADVLRSQATDVREAARQDLMEEGGRREIAQMVPVVFLVLPIT 301
Query: 311 ILVIIGPAILSI 322
++ + P + +
Sbjct: 302 VVFALFPGLFVL 313
>gi|283787697|ref|YP_003367562.1| tight adherence protein C [Citrobacter rodentium ICC168]
gi|282951151|emb|CBG90842.1| putative tight adherence protein C [Citrobacter rodentium ICC168]
Length = 283
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 49/230 (21%), Positives = 103/230 (44%), Gaps = 1/230 (0%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + LR G + + + L ++ I ++ + +L +
Sbjct: 48 AGETSTEKLLRRNGKGIVIASMLDKNIALKAAVVIFIAIVLQLLEKFDILTLSATVMACV 107
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++ + P ++ R I P +D++ ICV+SG++I+ +R +AE+
Sbjct: 108 LLVSLLLVILLPGKIKKMIIDSRVRRICNDLPYIIDIMAICVQSGMTIENTIRYLAENTE 167
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ +S + TI ++ A + YN +R L QS ++G+SI L
Sbjct: 168 TINPDISVLLARTIMKMEV-SGMSEALDLLYNEVPSQEIRMLASTLQQSIKFGSSIYLLL 226
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L E R +L+ ++K +SL K+++PMII + +++++ GP ++ I
Sbjct: 227 LDLSREIREMQLLAIDEKISSLAAKMSLPMIICIMFPILVLVAGPGVIRI 276
>gi|315606116|ref|ZP_07881147.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312398|gb|EFU60484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 298
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 51/272 (18%), Positives = 100/272 (36%), Gaps = 6/272 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
R +T + + S + +R E++ +L AG + +
Sbjct: 31 RRPSFVTRVAQGRVSDTRPSALGAWIRRCCSTALESMGSTSESVARRLSLAGMNMDVPV- 89
Query: 115 ILLVVRLVVPIIFLILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + + I+ L+L + L ++ + A +S +
Sbjct: 90 -FRLRQALAAIVGLVLSCALLTLRSAASLRSSLVSLCACALVAALLAVTAMDRALSIKAR 148
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+RQ +I A PD +LL + V +G SI A+ RVA G PL E+ LT A +
Sbjct: 149 RRQRAIDAAVPDCAELLALAVAAGESIPAAIERVA---GCAGGPLGSELALTSAHIRNGT 205
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A RT + ++ L + G+ + L + R L ++
Sbjct: 206 PSVRALAELVERTDSPSLTRLSRTLTTAIERGSPLASVLHDQARDQRERSLASLMEEGGR 265
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +P++ LPV ++ + P ++++ T
Sbjct: 266 REIAMLLPVVFLILPVTVMFALYPGLIALDFT 297
>gi|256004306|ref|ZP_05429288.1| type II secretion system protein [Clostridium thermocellum DSM
2360]
gi|281418014|ref|ZP_06249034.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|255991740|gb|EEU01840.1| type II secretion system protein [Clostridium thermocellum DSM
2360]
gi|281409416|gb|EFB39674.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|316939950|gb|ADU73984.1| Type II secretion system F domain [Clostridium thermocellum DSM
1313]
Length = 289
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/181 (22%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ I + +S V +R+ SI+ +PD L+ +++ V +G+++ +A +
Sbjct: 111 VATLVFGIAVTAAVPYFMDRELSGKVNRRRLSIQLDFPDFLNKVILLVNAGMTVSRAWEK 170
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG- 265
D + L +E+ +A++ + AFE+F NR ++ + AL+Q+ G
Sbjct: 171 SVTD-SEKDTVLYQELRTVLADIRGGKSETSAFEDFANRCRIPEITKFVSALLQNLNKGN 229
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ LR+ +E R A++ K+ PM++ F+ V+++V PA+L++ +
Sbjct: 230 AEMVSILRLQAAECWEMRKHAAKRLGEEASTKMLFPMMLMFIAVILIVA-TPAVLTLTGS 288
Query: 326 M 326
M
Sbjct: 289 M 289
>gi|254461341|ref|ZP_05074757.1| type II secretion system protein [Rhodobacterales bacterium
HTCC2083]
gi|206677930|gb|EDZ42417.1| type II secretion system protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 322
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/301 (15%), Positives = 107/301 (35%), Gaps = 29/301 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ V + G S+ + + ++ +LR
Sbjct: 8 IIYALVFIGVLVLVEGVYLVVFGRS------ISLNNKVNRRLEMLEKGGNREEVLDKLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ + L + +L+ I ++ +
Sbjct: 62 EMNQHINGRSIPLYSMLSDKANK--------------AAIAFTPQQLIG--IMGMVCVFA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + +R+ A + IG G +WIS+ +KR S ++ PDA++L++ +
Sbjct: 106 FLGLTIGTQTSIGVRIIASVGIGVGGVF---MWISHKAKKRMSMLEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL+ EM + E ++ + A + R +R
Sbjct: 163 RVGHPFSSAVQIVAKEVQD---PLASEMGVIADESAYGRDVGEALKAMAERLDNQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + + + + P++ LV
Sbjct: 220 AVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEAQWSGK-FLSSFPLMALVA 278
Query: 315 I 315
I
Sbjct: 279 I 279
>gi|281356958|ref|ZP_06243448.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316516|gb|EFB00540.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 292
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 63/274 (22%), Positives = 116/274 (42%), Gaps = 13/274 (4%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
L +++ + RL +R+ + L + ++ KL AG+ ++
Sbjct: 30 ELERKRAETDLPVPVLFRLLMPFLPLVRSTSESEGLASWRR--SVAPKLLMAGYGEVFTP 87
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ ++L+V + L+ + + + V S+W+S ++
Sbjct: 88 GDFIGLKLLV---------YLLGLVILLIGALSGRVLICLCMAALVVTFYSSMWLSMRIK 138
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R SI +A P+ LDLL++ VESG I ALR + + PL EE+ ++
Sbjct: 139 ARHLSIMKALPNVLDLLMLSVESGRDIVSALRDI--LARRRMDPLGEELTRAFRQMQLGR 196
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
R A + R + + A++Q++ G SI LRV R++R AEK A
Sbjct: 197 KRADALRDMAQRVRQPDLTTTVNAIVQAEELGVSIVQLLRVQGDMQRNKRFSLAEKLANE 256
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+ P++ LP +++VI GP L ++ +
Sbjct: 257 AAVKIIFPVVFCILPSVLIVIFGPLALQVLQMFR 290
>gi|51891530|ref|YP_074221.1| hypothetical protein STH392 [Symbiobacterium thermophilum IAM
14863]
gi|51855219|dbj|BAD39377.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 289
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 62/309 (20%), Positives = 116/309 (37%), Gaps = 22/309 (7%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ +S + ++ R + + E L+ R
Sbjct: 1 MAMAATWSFLAVLLFGLGLYDLATARRRRLRAMVERAGSGAAAPGADRRLQGWLKARILP 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L + + + L AG + ++LV+ + +
Sbjct: 61 RLPLV------PGVGSMDELRQLLLWAGRPAGIGAEEFYFLQLVLAFSLALPLLGL---- 110
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
A L +G P W+ V +R ++R P + LL C+E+G+
Sbjct: 111 ---------HGWTAAALGFLLGLWLPRAWLRRRVSERTRILRRELPRFVHLLATCLEAGL 161
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ +A+RRVA L+ EML + E++ Q A+ + R + ++ AL
Sbjct: 162 GLTEAVRRVA---AESPGLLAGEMLRAVHEMAAGKPAQRAWRDLTERHESPELKEVVSAL 218
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
QS R+G SI + LR + R + +A++KA ++ VPM+ L I++I+GPA
Sbjct: 219 QQSHRWGVSIAEQLRFTLRTMRERKQQQAQQKAHEASVRMRVPMVALILMPTIVIILGPA 278
Query: 319 ILSIIDTMK 327
+L ++
Sbjct: 279 VLRLLRHFA 287
>gi|297157606|gb|ADI07318.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
Length = 297
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 26/312 (8%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A + +A+ VS+ + Y + + +S A L + +
Sbjct: 1 MAIGVLLALVAGVSVAGVAYGIALY-----------RSEAKLPSDLAVALEVGATRTTVV 49
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R FV ++ + ++ AG +++ R V I+
Sbjct: 50 GSAVDRLGMRYAPFVLRM--MGEKRVGKVRRRIDLAGNPGGLTVDRYAARRAVYGILGFG 107
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
++ + LL G V I V++R+ +I+R PD LD+
Sbjct: 108 GALVMLMKGQLLLALVLVA----------FGLFWIEVGIWAAVRERRHAIERTLPDFLDV 157
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + V +G+S QAL RVAE G P ++E+ +T+ ++ +R+ AFE R +
Sbjct: 158 LAVVVSAGLSFRQALDRVAEKYEG---PWADELRITLRQMDMGVSRRQAFEELRKRNDSE 214
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
V L Q + G I ++L + ++ R A ++AA PK T+ + F +P
Sbjct: 215 QVAQFVTTLQQGEELGAPIVETLIAIANDMRRTDAQNARRRAARAVPKATMVVTTFMVPG 274
Query: 310 LILVIIGPAILS 321
++++I +
Sbjct: 275 TMILLIAGFFIG 286
>gi|118581109|ref|YP_902359.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503819|gb|ABL00302.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 321
Score = 96.4 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 26/302 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++F + A+ +S A E + ++ + +S LR
Sbjct: 2 LLAVFLAFFAVFVAVMAIYFWLTAVK------ESPAAELKRRLRRMSLDARYESIPEDLR 55
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K F ++ I + + L GF+ + L+V ++ ++ ++ I
Sbjct: 56 AELLKEATPFETFVS--RIPFMKRLDIYLDQCGFKIQ--PLTFLLVIVLAVLLSFLVAFI 111
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + V++SN+ +KR SS PDAL ++
Sbjct: 112 FR------------PSLLFAAFVAACVLVGACVYVSNVRKKRYSSFTEQLPDALTMIARS 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S+ A+ V PL + A R +R
Sbjct: 160 LRAGHSLTSAVELVGS---ETPEPLGGLFRAAYEQQKLGLRITDALGGMLQRMDSLDLRF 216
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ G ++ + L L + R + + + + +++ I+ LP+
Sbjct: 217 FVTVITIHAESGGNLSEILDKLAATIRERIKLRRQVQVYTAQGRMSG-YILVALPIFAFF 275
Query: 314 II 315
+
Sbjct: 276 FL 277
>gi|332560333|ref|ZP_08414655.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
gi|332278045|gb|EGJ23360.1| Type II secretion system protein [Rhodobacter sphaeroides WS8N]
Length = 322
Score = 96.4 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 49/302 (16%), Positives = 110/302 (36%), Gaps = 29/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ L+ + + G S+ + ++ +LR
Sbjct: 8 IIYILIFVAVLLLVEGIYLTVFGKT------ISLNSRVSRRLALLEKNQNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S+ + N + I + + +K + A + +V I+ L+ + +
Sbjct: 62 EMSQHM-------NARGIPLYAILASKAQKANIA--------FSPKALVGIMVLLSAVAY 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ P A+++ + W++ +KR + I+ PDA++L++ +
Sbjct: 107 LGLTIGTSAAPLVRGAVALVMGVGAVYV----WVNGKAKKRMALIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL E + E ++ + F R + +R
Sbjct: 163 RVGHPFSSAIQIVAKEVPD---PLGTEFGVIADEAAYGRDVAECIRAFAERMESQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L RS + KA + K + + P++ LV
Sbjct: 220 AVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSAFPIVALVA 278
Query: 315 IG 316
I
Sbjct: 279 IS 280
>gi|116626773|ref|YP_828929.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116229935|gb|ABJ88644.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 325
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 54/321 (16%), Positives = 109/321 (33%), Gaps = 30/321 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + S+ + S+ E E R+ LR T +K
Sbjct: 1 MHPVSFFLIVGVLFSMALYAAGYYVWSVPEQEAEDRL---NSRLRELRAHTRTRSEKAPE 57
Query: 69 SSRLRTRDS-KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R R S L + V + + + + + A + + +
Sbjct: 58 LLRRTHRGSFAFLGDLVTWVGVLR-----RLQDLIEQANLK-------YRAADVFGVSVM 105
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L +G + + F IL + P +I + +R + PDA+
Sbjct: 106 LAVGTLLVLTL-------FGAMFFLRILFAILVGFTPVFYILRVRGRRLHKFEEMLPDAI 158
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL + +G +I L +A S P+ E + EL+ + A R
Sbjct: 159 DLFTRTMRAGHNIHSGLETIAT---ETSDPVKMEFKKLMEELALGSQVEPALHGLGKRVP 215
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ ++ +LI + G ++ L L + R M A+ KA + + + + + L
Sbjct: 216 LIDLKFFITSLILQRQTGANMVSVLENLSTLVRERLNMAAKMKAHTAQQRFSAGL-LCCL 274
Query: 308 PVLILV---IIGPAILSIIDT 325
P+++ + I+ P + ++ T
Sbjct: 275 PLVVGIGFWILKPEYVRLLWT 295
>gi|310822672|ref|YP_003955030.1| type II secretion system protein f domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|309395744|gb|ADO73203.1| type II secretion system protein F domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 281
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 9/214 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L + +I I + + ++ P + GF P + + ++R
Sbjct: 48 FLFIDPRQMLILNIASMCLLGILAYIVFNP-----IMCVGATIFGFFLPMLLVKYYRKRR 102
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
DAL + ++G++ QA+ VA PLS+E L + E+
Sbjct: 103 IKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAR---EALPPLSQEFGLFVKEVKLGVPL 159
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A N R D + + + + G ++ + + R +E + A +
Sbjct: 160 EEALINMGKRVGSDDLELVVVSTNIARQLGGNMAEMFETISMVIRERFRLEGKIDALTSQ 219
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
KL I+ +P ++ +++ +++ M DH
Sbjct: 220 GKLQG-WIVASMPAVLGMVLNSMRPDLMEPMMDH 252
>gi|120602155|ref|YP_966555.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
gi|120562384|gb|ABM28128.1| type II secretion system protein [Desulfovibrio vulgaris DP4]
Length = 321
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 101/265 (38%), Gaps = 7/265 (2%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+++ + RL T L K L D ++ L AA + IL ++
Sbjct: 29 RTERERIARRLGTLHGAKGDARGVDLERKLTLSDMPWLDDLLAAQAWTRRMALILEQGQV 88
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ L+L + + F V +++ P + + +R + +R
Sbjct: 89 KTTLGMLVLTSVMAGALCLMAMALFSSNVFLLVVPPLAVAYVPFMLVFRKRDRRMARFQR 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PDALDL+ + +G + +Q +R VA++ P+ E + E+++ A N
Sbjct: 149 QLPDALDLVGRALRAGHAFNQGMRMVADEFED---PIGPEFQKVLDEINYGVPADTALIN 205
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R ++ ++ G ++ + + + R + + S +LT
Sbjct: 206 LVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEGRLTA- 264
Query: 302 MIIFFLPV---LILVIIGPAILSII 323
I+ LP +I+ ++ P +S++
Sbjct: 265 WILLALPFGIGIIINMLNPDFMSVL 289
>gi|260771471|ref|ZP_05880396.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
gi|260613597|gb|EEX38791.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
Length = 321
Score = 96.0 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 47/311 (15%), Positives = 114/311 (36%), Gaps = 29/311 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ ++ + A+++P+ GS K + R ++ S + + S L+
Sbjct: 6 MFFVLLFFAVVFISQALILPAAGSKAKHKELA--------NRLKETQSNLDEESRSLLQE 57
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
KSL ++ L + ++ + +GF S +
Sbjct: 58 HYLKSLTPLDRR--LVQVKAFASLKKSIELSGFDWSLSQT--------------LGVTTV 101
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ LL + + + + + R S + PDALD++ +
Sbjct: 102 LSLGLGLLLLILGQVWYLCLASVAFVWVCLHMTLQKKISDRLSKFEEQLPDALDIIRRML 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G + Q+ V ++ P+ E T L++ + ++A +RT +
Sbjct: 162 QAGQPLTQSFNEVGNEM---PAPIGVEFKNTFNLLNYGYDLRLAIMQMADRTPTVSMLAF 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV- 313
+ A++ G ++ ++L + R+ + + K S +++ +++ VL +V
Sbjct: 219 SSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISAESRMSAWILVLSPFVLFIVM 278
Query: 314 -IIGPAILSII 323
+I P +S +
Sbjct: 279 SLIHPGYVSPL 289
>gi|184200572|ref|YP_001854779.1| hypothetical protein KRH_09260 [Kocuria rhizophila DC2201]
gi|183580802|dbj|BAG29273.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
Length = 314
Score = 96.0 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 43/256 (16%), Positives = 93/256 (36%), Gaps = 6/256 (2%)
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
++ S S ++ +++ E + +L G R + + +++
Sbjct: 57 ARRARGRSLTGAAGSAAMSWILQRAAPL-FSNTEVLARRLVRDGSRKD--VMDYRAEQVL 113
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ +LG + E + V+L G + +S +++R+ +
Sbjct: 114 CAVAGGVLGGVGGIALVLRAEVSVAIVAVGVVLGAGCGVWLRNNLLSRSIRRREKLMVAE 173
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+P +L+ + V +G S AL RV LS E +A+ A ++F
Sbjct: 174 FPAIAELMALAVGAGESTVGALERVCRV---AEGELSGEFRAVLAQTRAGSGLTTALQDF 230
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
RT + + ++ + GT + + LR + R + A + VP+
Sbjct: 231 SARTDVVALGRFVDGIVVAIERGTPLAEVLRAQAQDVRDHDKRVLMEVAGKKEIAMLVPV 290
Query: 303 IIFFLPVLILVIIGPA 318
+ F LP+ + + P
Sbjct: 291 VFFILPLSVAFAVFPG 306
>gi|329935278|ref|ZP_08285244.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329305101|gb|EGG48960.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 296
Score = 96.0 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L + ++ AG +L+ R + ++++
Sbjct: 64 LRLMGPRRTDAKRRRIDMAGNPGGLTLDRYAARRAFYGFFGAFMALVFLTTGH------- 116
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ G A I ++ R+ I R PD LD+L + V +G+ QAL R
Sbjct: 117 ---WLIALATLAFGLLAADALIWQAIRDRKDVIDRTLPDFLDVLAVVVSAGLGFRQALDR 173
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VAE G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+
Sbjct: 174 VAERYEG---PWADELRITLRQMDMGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGS 230
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I D+L L ++ R A ++AA PK T+ ++F LP +++I L
Sbjct: 231 PIADTLIQLATDMRRTDAQNARRRAAKTIPKATMVTLVFMLPATMILIATGMFLG 285
>gi|46580528|ref|YP_011336.1| hypothetical protein DVU2123 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449947|gb|AAS96596.1| membrane protein, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234267|gb|ADP87121.1| Type II secretion system F domain protein [Desulfovibrio vulgaris
RCH1]
Length = 321
Score = 96.0 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 47/265 (17%), Positives = 101/265 (38%), Gaps = 7/265 (2%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+++ + RL T L K L D ++ L AA + IL ++
Sbjct: 29 RTERERIARRLGTLHGAKGDTRGVDLERKLTLSDMPWLDDLLAAQAWTRRMALILEQGQV 88
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ L+L + + F V +++ P + + +R + +R
Sbjct: 89 KTTLGMLVLTSVMAGALCLMAMALFSSNVFLLVVPPLAVAYVPFMLVFRKRARRMARFQR 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PDALDL+ + +G + +Q +R VA++ P+ E + E+++ A N
Sbjct: 149 QLPDALDLVGRALRAGHAFNQGMRMVADEFED---PIGPEFQKVLDEINYGVPADTALIN 205
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R ++ ++ G ++ + + + R + + S +LT
Sbjct: 206 LVRRVDCPDLKFFVVSVNIQRETGGNLAEIVTGIARLIRERFKLAGRVRVLSAEGRLTA- 264
Query: 302 MIIFFLPV---LILVIIGPAILSII 323
I+ LP +I+ ++ P +S++
Sbjct: 265 WILLALPFGIGIIINMLNPDFMSVL 289
>gi|325518834|gb|EGC98408.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
Length = 325
Score = 95.6 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 51/308 (16%), Positives = 102/308 (33%), Gaps = 25/308 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
++ I T V++ I R +R +
Sbjct: 1 MNSIFYGFVILTFVAVVLAIEGAYQWWSARHGTAARRIE-----SRIRAMSAGGQVQQER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + F L + ++I L+ +G + L
Sbjct: 56 LSILKQRMLDESKPF--DRLLLRMPRVKSIDLLLQQSGLD--------------WSVAKL 99
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I + + L+ L + AV+L+ C P + + R ++R PD D
Sbjct: 100 IALSVMLPPLAWLVLSFTALPLPAVLLLALPSACLPVLRVMRRRAARMRKLQRQLPDVCD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + SG + AL V E+ P+ E +T E+++ + A N R +
Sbjct: 160 MIARALRSGHAFTGALGMVGEEFPE---PMGGEFRITFDEINYGVSLHDALMNLATRVPV 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + R + + + S +L+ I+ LP
Sbjct: 217 QDLRYFVIAVLIQRETGGNLAELLDSIAGLIRERFKLFDKVRVLSAEGRLSA-WILGLLP 275
Query: 309 VLILVIIG 316
++
Sbjct: 276 FGTAALMA 283
>gi|308050052|ref|YP_003913618.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
gi|307632242|gb|ADN76544.1| Type II secretion system F domain protein [Ferrimonas balearica DSM
9799]
Length = 324
Score = 95.6 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 112/302 (37%), Gaps = 24/302 (7%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ EL +++ L A+ IP + K V L ++ S +
Sbjct: 1 MSIELIFLGCVFLAVILLSQALFIPVYRPKRGDT--KVVKERLNRLAQEWGDEKAAVSIA 58
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R + + L +++ ++ KL+ +G R L++ L ++ +
Sbjct: 59 LENRLKKASPLGKAMEQSQF-----VSDLTFKLQQSGSRLLG--YQFLLIALFSALVVAV 111
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+W + + + ++ ++ KR I+ +P+ALD+
Sbjct: 112 AVWLWRSEW------------FLALTAAIIVLALFNLKLNRDFNKRMEKIEEQFPEALDI 159
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L +++G + A++ E++ G P++ E + AE+++ + + A +F R
Sbjct: 160 LRRGIQAGYAFPDAIKLTYEEMDG---PIAYEFKVMFAEINYGKDTRRALLHFIERVPSV 216
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A+ G ++ ++L L R + + K S +++ +++
Sbjct: 217 SAMAFSTAVQVQKETGGNLAENLENLTRIIRKRFRFQRQVKTFSAQGRMSAWVLVCVPLA 276
Query: 310 LI 311
L
Sbjct: 277 LF 278
>gi|15602712|ref|NP_245784.1| hypothetical protein PM0847 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721156|gb|AAK02931.1| TadC [Pasteurella multocida subsp. multocida str. Pm70]
Length = 284
Score = 95.6 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 1/174 (0%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V + +I P + + +++ + I P +DL+ + V++GISID AL++VA
Sbjct: 107 FVIGLSIILVFIIVIPGILTNAILKAKVKKIMVDLPGFIDLVAVNVQTGISIDAALKQVA 166
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
D + L+ ML I + A ++ +R L QS +G+SI
Sbjct: 167 IDFKKLNPDLTYVMLRIIRKSEL-TGLSQALQDLSISLPTTEIRMFCTVLQQSLNFGSSI 225
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L L ++ R +L+ E+K +L K+++P+I+F + +I++I+ P I+ +
Sbjct: 226 YSHLIQLSADIREIQLLIIEEKLGTLSAKMSIPLILFIMFPIIILILAPGIMRV 279
>gi|260428144|ref|ZP_05782123.1| type II secretion system protein [Citreicella sp. SE45]
gi|260422636|gb|EEX15887.1| type II secretion system protein [Citreicella sp. SE45]
Length = 321
Score = 95.6 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 48/307 (15%), Positives = 114/307 (37%), Gaps = 29/307 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E+ + + L+ V + + G S+ + ++ ++
Sbjct: 1 MLSAEIIIYGLIFAGVLVLVEGVYLVAFGKS------ISLNSRVNRRLEMLDKNVAREEV 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++LR + L N L R++ + +L++ + +
Sbjct: 55 LAKLRKEMDQHLENRGIPLYSILAD--------------RAQKAALAFTPNQLILMMAGV 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + P ++ +G + +G V +W++ +KR S I+ PDA++
Sbjct: 101 SVFAFFGLTIGTEASLPVRIVMGIGMGVGGV-----FMWVNGKARKRLSLIEEQLPDAVE 155
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++ + G A+ V+ +I PL+ E + E ++ + + ++ R M
Sbjct: 156 LMVRSLRVGHPFSSAISVVSCEIKD---PLATEFGIIADESTYGRDIGESLKHMAERLDM 212
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A+ + G ++ + L L R+ + KA + + + + P
Sbjct: 213 QDLRFLAVAVTIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAEAQWSGK-FLSGFP 271
Query: 309 VLILVII 315
V +L+II
Sbjct: 272 VAVLLII 278
>gi|148556412|ref|YP_001263994.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148501602|gb|ABQ69856.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 297
Score = 95.6 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 60/319 (18%), Positives = 114/319 (35%), Gaps = 26/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
DA + V++ ++ +V+ + E + +++
Sbjct: 1 MDALAFLWFLLAIVAVATMARGMVLL------------AAMQRVEARIARTVSAQAARPL 48
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L+ I +LR AG ++ L +RL +
Sbjct: 49 WGGLKLPA----------FLAPRGRDGSEIARELREAGIHHPRAIEYFLWLRLGATAVAC 98
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L I R VIL G + + L RQ +I +P LD
Sbjct: 99 GLAAIANLVATGAP----LSRPVPVILAGAGAYLLSKRLLHFLKGVRQRAITAEFPFLLD 154
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +ESG+S+DQ R +A + + L+ + + +L + A + RT +
Sbjct: 155 LLQMMLESGLSLDQCFRSIATEENEATPRLAATVRRLVFDLDRGMSYDAALGRWAERTAV 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ Q+ GT + +LR E R+ A + + ++ + +I FLP
Sbjct: 215 GGAKELASLFQQALLQGTELAPALRTFTREFTERRIAHARESIGRISVQMVLVLIACFLP 274
Query: 309 VLILVIIGPAILSIIDTMK 327
+ +V+ GP + S+ D ++
Sbjct: 275 AIFIVVGGPPVASLFDMIR 293
>gi|294012232|ref|YP_003545692.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292675562|dbj|BAI97080.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 333
Score = 95.6 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 20/309 (6%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ V + ++ I + ++ V R + S R
Sbjct: 7 RVFVLVLLFAAVILTIEGIAGWLRARATTDR----VVNRRLKMIAAGFERSTVLSKLRRS 62
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
S + + L ++ L AG + L++ + +
Sbjct: 63 DEAVSFDRSSLFGRAGLG-------VMRVLHGAGLTFPARTVLTLMLIATSALFL----L 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + G + V A+ G +G P + ++ L Q+R+ ++ +P ALD +
Sbjct: 112 VMVGGLAAGYALTAGMFVMALAFAGALGIALPMMVLTRLAQRRRKKMEEQFPVALDTFVR 171
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G I AL + +++ P+ E + + E+++ + + A + R M+ +
Sbjct: 172 GLRAGHPIAAALDLLTKEMRD---PIGSEFGIVVDEVTYGSDLRDALQRMAERWDMNEMH 228
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVL 310
+L G ++ + L L + R + + +A S ++T M+ + L +
Sbjct: 229 MFVISLSVQSETGGNLAEILENLSTVIRERASLFMKVRALSSEGRMTAVMLTALPILAFV 288
Query: 311 ILVIIGPAI 319
L ++ PA
Sbjct: 289 GLFLVNPAF 297
>gi|72162675|ref|YP_290332.1| integral membrane protein [Thermobifida fusca YX]
gi|71916407|gb|AAZ56309.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 273
Score = 95.6 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 16/264 (6%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLK--AILVDENIVNKLRAAGFRSEYSLNILL 117
+K S + + R ++ + L+ I ++ AAG ++
Sbjct: 14 AAPKKKKSDETFILHRITELIGRPFATTLLEWLGEEQQAKIQARIDAAGRPEGLTVRRYA 73
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ +++ L + L L+ + + + +KRQ
Sbjct: 74 QRKAGEVLLYGTLAVFLFLQGSTTL-----------ALVVLAFGTLTDLSLYSEKRKRQE 122
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I++ PD LD+L + V +G+S QAL RVA+ + G L+ E L + ++ +R+
Sbjct: 123 EIQKQLPDFLDVLAVTVSAGLSFRQALARVADAMPG---VLASEFQLALRQMELGTSRRD 179
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
AF R + + AL Q++ G + +L L ++ R E +KA L P+
Sbjct: 180 AFAALRERNSNEALGRFITALQQAEELGAPLSQTLHALSTDMRREDAQFLRRKAQHLNPR 239
Query: 298 LTVPMIIFFLPVLILVIIGPAILS 321
+T LP L+L+I G +L
Sbjct: 240 VTAVTAATMLPGLLLIIGGGMLLG 263
>gi|319941897|ref|ZP_08016218.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
3_1_45B]
gi|319804550|gb|EFW01420.1| hypothetical protein HMPREF9464_01437 [Sutterella wadsworthensis
3_1_45B]
Length = 297
Score = 95.6 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/291 (23%), Positives = 134/291 (46%), Gaps = 14/291 (4%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
++F + +V+ S R V ++ + L + L R
Sbjct: 5 IIFALFVMAMLIVVCVGYSASQAWRSLLVEQRLNQIKGSGDSRLVRWEDLLTLIARP--- 61
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
L+ + ++ AGF + ++ L+ R +V I + G + I
Sbjct: 62 ---------LRRSRDLAAVERSMQQAGFIKPWQTDLFLLFRALVLIAAAVGGWLAIDIDP 112
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L + + L+ G AP ++S L ++RQ+ I+ P A+DLL IC+ G+S
Sbjct: 113 THLVQKPLPPLAYLFLLFVAG-RAPGWFLSELAERRQNRIRLFIPKAVDLLTICMSCGMS 171
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+++A RVA +I ++ +++E +T E+ + NR VA + R+ + ++ +L+
Sbjct: 172 LEEAFDRVASEIARRAPEVAKEFRMTRYEM-LVVNRTVALKRLEARSGVREMKILANSLL 230
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
QS +YGT + ++L+ + +E R+ +L E E+KA + + VP+I+ L +
Sbjct: 231 QSIQYGTPLTEALQSIAAEARAGQLSELEQKAGRISAVIGVPLIVLVLFPV 281
>gi|219883049|ref|YP_002478213.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219862055|gb|ACL42396.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 309
Score = 95.6 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/250 (19%), Positives = 90/250 (36%), Gaps = 9/250 (3%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R + L+ + I L G+ S+ + ++ P FLIL
Sbjct: 31 DRRRPAAAEGTSVLSRMTGITSSTIEEVLNRRGWTRAISVALEHAGLVIAPADFLILAGA 90
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+G + +++S L KR+ D+L LL
Sbjct: 91 ACLVAIICGALLGGPLLGLFGALACA--LGVKMYLSFLAGKRRKKFADQLDDSLQLLSGG 148
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S+ +A+ V++ P +EE + E + A + R + +
Sbjct: 149 LRAGHSLQRAVDAVSQQ---APSPTAEEFSRIMNETRIGRDLTDAMDQTAERMKSEDFSW 205
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+QA+ G + D L + R ++ + KA S K++ ++ LPVLI+
Sbjct: 206 VSQAIGIHREVGGDLADVLDQVGRTIRERNQIQRQVKALSAEGKMSA-YVLMALPVLIIG 264
Query: 314 ---IIGPAIL 320
II P+ +
Sbjct: 265 VLAIISPSYI 274
>gi|56460009|ref|YP_155290.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
gi|56179019|gb|AAV81741.1| Flp pilus assembly protein TadC [Idiomarina loihiensis L2TR]
Length = 237
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 2/192 (1%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
W+F + V + + + L K +I R PD DL+
Sbjct: 42 FFFWVFMACVSVSISLLSGVWLLSIAYVLLLLMVINKRRQLALKNNKAIVRQLPDFCDLI 101
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + SGI + AL +V+ L+ E+ ++ L + + R
Sbjct: 102 SMMIASGIPLISALEKVSASCSDLL--LAREITSMLSRLRRGTSFAQSMYELSERYDAKQ 159
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + LI+ + GTS+ SLR ++ R + L AEK+A KL P++ F PV
Sbjct: 160 IHEWSSMLIKGYQQGTSLTKSLRFYANQLRQDLLNSAEKRAQEAPVKLLFPLVTCFFPVN 219
Query: 311 ILVIIGPAILSI 322
LVI+GP I+ I
Sbjct: 220 FLVILGPVIVQI 231
>gi|296129086|ref|YP_003636336.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296020901|gb|ADG74137.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 309
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 5/277 (1%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ V + R +L + ++ ++L A
Sbjct: 34 QRVGPYLRTRGTSALLRTDVPRGPWGTVERLVAPFLADGVRLVARIGSPAADLRHRLVRA 93
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G ++ ++V ++ L G++ V V+++G VG AP
Sbjct: 94 G--RTETVEQFRAQQVVGGVVGLAGGLLLAVLLAATRGGALVPLVALVVVVGVVGALAPD 151
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ V +R++ + P +LL + V +G AL RV G L++E+ T
Sbjct: 152 WYLGRQVARREARLLAEMPTVTELLALAVSAGEGATGALERVVRQTRG---ELADELART 208
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+AE A + +RT + + + + + G+ + D LR + R E
Sbjct: 209 LAEARAGAPLTTALQTLADRTGLPALARFAEGVAVAVERGSPLADVLRAQAQDVREEGRR 268
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + VP++ LPV +L + P+++ +
Sbjct: 269 ALMQTGGRKEVLMMVPVVFLILPVTVLFAVFPSVVVL 305
>gi|260892665|ref|YP_003238762.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864806|gb|ACX51912.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 269
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 13/240 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
+ L + KL AG + + L + +F +L + ++FG D
Sbjct: 40 VKLVPAEELTALGAKLVRAGLSITPAEFVGARALLCLGFVFSVLPLCFLFGVD------- 92
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
V+ + + AP +W+++ V +R++ I+R PD L + +G + ALR
Sbjct: 93 ---FFWVVFFLPLLWFAPVLWLNSRVARRKALIRRQLPDFSVFLATALTAGADLPTALRE 149
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+GG P+ EE+ + E N A E+ +R MD +R + ++ YGT
Sbjct: 150 AGTHVGG---PIGEEVERVLLEFGLGRNLVSALEDMADRCDMDELRLLLWSAGRAYAYGT 206
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S+ + +R RS R E + A L L P++ F L L++V++ PA +++
Sbjct: 207 SVAEEVRAQADRQRSMRRFEVMEAAGKLAIYLIFPILFFMLLPLMVVVMYPAAVALYQAF 266
>gi|32471257|ref|NP_864250.1| hypothetical protein RB1148 [Rhodopirellula baltica SH 1]
gi|32396959|emb|CAD71929.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 314
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/275 (18%), Positives = 94/275 (34%), Gaps = 20/275 (7%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R + + K L + ++ L AG ++
Sbjct: 31 RYQFGIHERLATLSRELDETDSASLFKEWSQAGSTGMLLGMFGGSSLTTLLNQAGI--KW 88
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ V LV+ + +LG W + I G +G P ++
Sbjct: 89 TVKQWWVTVLVIATVGTLLGGYW--------------DIRLGIATGLIGLLLPFAFLFAK 134
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
R + R P+ L+ V SG ++ AL+ +AED P+ EE L +
Sbjct: 135 QNARNQQLSRQLPEVFQLISRAVRSGQTVTSALQMIAEDCPS---PIREEFALCYEQQEL 191
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
R++AF R Q+ +R AL+ +R G + + L L + KA
Sbjct: 192 GMWRELAFRKLAERNQVMELRIFVVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKA 251
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ ++ +++ LP + L I +T+
Sbjct: 252 LTAEGRMQA-LVLVVLPFVALGAIVLFSPEYAETL 285
>gi|89068022|ref|ZP_01155439.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
gi|89046261|gb|EAR52318.1| type II/IV secretion system protein, TadC subfamily protein
[Oceanicola granulosus HTCC2516]
Length = 322
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/303 (16%), Positives = 113/303 (37%), Gaps = 29/303 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ V + ++ + + G S+ + + ++ +LR
Sbjct: 7 FIIYGLIFVGVLVMVEGLYLVVFGRS------ISLNSKVNRRLEMLERGQGREQVLDQLR 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
S+ L++ +++ + + K + A S + ++ +L +
Sbjct: 61 KEMSQHLKS-------QSVPIYSLLAAKAQKANIAFSPS---------QLIMVMGLLSAV 104
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G E +R+ + +G G +W+++ +KR S I+ PDA++L++
Sbjct: 105 AFAGLTLQTEAGLPVRLAVAVAMGVSGVF---MWVNSKAKKRMSMIEEQLPDAVELMVRS 161
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ G A+ VA+++ PL EM + E ++ + + + R M +R
Sbjct: 162 LRVGHPFSSAINIVAKEVAD---PLGTEMGVIADEAAYGRDMGESLKAMAERMDMQDLRF 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ G ++ + L L R+ + KA + K + M + P+L LV
Sbjct: 219 LAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVKAITAEAKWSG-MFLSGFPLLALV 277
Query: 314 IIG 316
I
Sbjct: 278 AIN 280
>gi|311105395|ref|YP_003978248.1| type II secretion system protein F domain-containing protein 2
[Achromobacter xylosoxidans A8]
gi|310760084|gb|ADP15533.1| bacterial type II secretion system protein F domain protein 2
[Achromobacter xylosoxidans A8]
Length = 290
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 51/234 (21%), Positives = 98/234 (41%), Gaps = 5/234 (2%)
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ + A + S + + L + + +
Sbjct: 60 WRWRIRLTRAIERAALPAGISYAHVAALSWSAATAAGGLATTVALVLLQAQSWGWIPWAV 119
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A L P +W+ +L KR+ SI+R P D++ +CVE+G+S+ AL+ A+
Sbjct: 120 ASALGAGAA---PGLWLRSLSVKRRRSIERDLPFVFDMMTLCVEAGLSVHGALQMAAQSG 176
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L + + +AE+ +R A + R+ RN AL Q++ G S+G
Sbjct: 177 PA--GILRDALADALAEMRAGVSRTAAIKALAERSNSPLARNWAAALAQAEALGISLGPV 234
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
LR +++RS+R + AE+ A K+ +P+I P +V+ P ++ ++ +
Sbjct: 235 LRAQAAQSRSDRHVRAEQLAMQAPVKMLLPLIGCIFPCTFIVLAFPVMVQLLQS 288
>gi|87312289|ref|ZP_01094387.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
gi|87284993|gb|EAQ76929.1| secretion system protein TadB [Blastopirellula marina DSM 3645]
Length = 320
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/316 (14%), Positives = 103/316 (32%), Gaps = 29/316 (9%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + I V I +LI V + +G E M ++L + ++
Sbjct: 2 LSILIPIVVFVGIAALIGGVALSFRNTGSEEAEM-----RLDVLTGAGQPRGKDADPAAG 56
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L + IL N+ L A S+ L+++ + IL
Sbjct: 57 LLSGFQDEGNAIEAY-----ILQYFNLRLFLDQADM--SMSVANLVMISGGLAAAGAIL- 108
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + P + + R + + PDAL+L+
Sbjct: 109 -----------PIAIGMPFYVAPITAGLLGVIPFAMVHFKRKARLAKFGKQLPDALELIS 157
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G S+ R V+E+ P+ E + + + A + R +
Sbjct: 158 RALRAGHSLGAGFRLVSEESDD---PIGREFAKVFEAQNLGVSLEDAITDMTERVPNLDL 214
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ A+I + G + + L + R + +A + +++ +++ P L
Sbjct: 215 KFFGTAIILQRQTGGDLAEILDKIGRLVRQRLELFGTIQALTGEGRISGIVLLGLPPALF 274
Query: 312 LVI--IGPAILSIIDT 325
+ + + P + + T
Sbjct: 275 VALWRLNPGYVMTLFT 290
>gi|327539549|gb|EGF26159.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 314
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/312 (16%), Positives = 102/312 (32%), Gaps = 31/312 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + ++ +++ V R + +
Sbjct: 5 MIFVAIFFTVSIVVFIFSTVFYQR-----------VLRYQFGIHERLATLSRELDETDSA 53
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
K L + ++ L AG ++++ V LV+ + +LG W
Sbjct: 54 SLFKEWSQGGSTGMLLGMFGGSSLTTLLNQAGI--KWTVKQWWVTVLVIATVGTLLGGYW 111
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ I G +G P ++ R + R P+ L+ V
Sbjct: 112 --------------DIRLGIATGLIGLLLPFAFLFAKQNARNQQLSRQLPEVFQLISRAV 157
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SG ++ AL+ +AED P+ EE L + R++AF R Q+ +R
Sbjct: 158 RSGQTVTSALQMIAEDCPS---PIREEFALCYEQQELGMWRELAFRKLAERNQVMELRIF 214
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
AL+ +R G + + L L + KA + ++ +++ LP + L
Sbjct: 215 VVALLVQNRSGGDLVELLDNLSKMVTKRLRLRDRIKALTAEGRMQA-LVLVVLPFVALGA 273
Query: 315 IGPAILSIIDTM 326
I +T+
Sbjct: 274 IVLFSPEYAETL 285
>gi|256824884|ref|YP_003148844.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
gi|256688277|gb|ACV06079.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
Length = 309
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/285 (17%), Positives = 99/285 (34%), Gaps = 9/285 (3%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
P + L R+ + + + + L ++ L + +L +
Sbjct: 26 PRWRTPSLAMRVDPYVRDEPAPARLFNLAPHEQLTVHHLVDPVTRRLGARLGEL----LG 81
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+E + +L AG + + + V+ + G +
Sbjct: 82 GEETLGRRLARAGQVPD--VQGYRAQQAVLGCVLAAAGAALGVLLWGSGRAAPLVAPALA 139
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++ G G ++ V +R+ + +P +LL + V +G S AL RVA G
Sbjct: 140 LVGGIAGVMLRDQLLARRVAQRERRVVEEFPAVAELLALAVAAGESATAALERVARLSRG 199
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
LS E+ + E + A E RT++ V +I + GT + D LR
Sbjct: 200 ---ELSRELTQALGEARTGASLPTALEGIAERTEVPSVARFVDGVIIAVERGTPLADVLR 256
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
++ R + + +P++ F LPV ++ + P
Sbjct: 257 AQATDAREAARQHVIAEGGRREILMMIPVVFFVLPVTVVFAMYPG 301
>gi|238790284|ref|ZP_04634058.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
gi|238721634|gb|EEQ13300.1| Flp pilus assembly protein TadC [Yersinia frederiksenii ATCC 33641]
Length = 282
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/200 (22%), Positives = 96/200 (48%), Gaps = 1/200 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ ++ + L+ + + + ++I P + +V R I+R P
Sbjct: 82 FSLFLISMVMMADELLKLDLSSKDLMISCLIIIIAVIIIPGIVRKYIVNARIEKIERDMP 141
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+DLL ICV+SG++I+ +L+ +AE++G + + + ++ + +
Sbjct: 142 LFVDLLAICVQSGLTIESSLKFLAENVGDINDNFVPFLDRLVKKIEVN-GLEAGLTHLQK 200
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
V L QS RYG+SI + L L SE R +L++ E+ L K+++P+++
Sbjct: 201 ELPSREVSMLCVTLQQSLRYGSSIYEYLMELSSEMRELQLLKTEEIIGKLSAKMSIPLVL 260
Query: 305 FFLPVLILVIIGPAILSIID 324
FF+ ++++I P I+ ++
Sbjct: 261 FFMFPVVIIIAAPGIMRVMS 280
>gi|301165544|emb|CBW25115.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
Length = 296
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 80/195 (41%), Gaps = 4/195 (2%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++ ++ +G+ + + + ++ G++GF P I+ LV +R ++
Sbjct: 62 KITYALLGCSVGLGCFMFLLFGVLGQWVIGFILGLIFGFIGFKVPKPLINYLVDRRINAY 121
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
DAL LL + +G+S+ QA+ V +++ P+S+E + + + + F
Sbjct: 122 SAQMVDALTLLSNGIRAGLSVPQAIGMVVDEM---PAPVSQEFNMILQQNRIGVPLEECF 178
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+N R + ++ G ++ + +V R ++ + + +
Sbjct: 179 DNLSKRIPTEDNDMFVSSINILRETGGNLAEVFDTIVDVIRERVRLKQKIDTFTAQG-MF 237
Query: 300 VPMIIFFLPVLILVI 314
+ IF +P I +I
Sbjct: 238 QGLTIFLMPYGIGLI 252
>gi|297568749|ref|YP_003690093.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924664|gb|ADH85474.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 305
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 3/301 (0%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
+LI+A+V L M +A ++ + ++ LR S +
Sbjct: 4 ALIWALVAALLTISCGLGVMLWLAAKQRRRMRARLQRTLHRPGDGALRRPGSPGWLAQLS 63
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
L + LR AG+R ++ +RL++ ++L ++ ++
Sbjct: 64 ALWPQRPEAAAATERLLRQAGWRRQFDYATFAGLRLLLVPAMMLLLLLLLWVVG---GRA 120
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+L + +G +G+ P + + RQ+ I+R P LL + +E+G+ +DQAL
Sbjct: 121 LELSWILLPTVGALGWLLPLWGLRMRARARQARIRREVPMLAQLLRVLIEAGLGLDQALL 180
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
VA D S+E+ + + ++ R + +++ + L Q RYG
Sbjct: 181 TVATDNREIIPACSQELSVVMRQVEQGAERGTTLLAMARTLDVQELQDLCEMLRQVYRYG 240
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ D LR V+ R ++ +++ L +T+ +IIFF P L+ V+ GP ++I
Sbjct: 241 GNVRDPLREFVALLYDRRRIKLQERVGKLAGSMTIIVIIFFFPALLAVVAGPGFIAIWRM 300
Query: 326 M 326
+
Sbjct: 301 L 301
>gi|149915638|ref|ZP_01904164.1| type II secretion system protein, putative [Roseobacter sp.
AzwK-3b]
gi|149810530|gb|EDM70373.1| type II secretion system protein, putative [Roseobacter sp.
AzwK-3b]
Length = 322
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 100/301 (33%), Gaps = 29/301 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + G S+ + + ++ +LR
Sbjct: 8 IIYGLIFIGVLVLVEGIYLTVFGRS------ISLNNRVNRRLEMLDKTGNREQVMEKLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L+ A + + + ++ + ++
Sbjct: 62 EMQQHLKARNIP----------------IYAILSEKAQKAAIAFTPQQLIMLMAGVSVLA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G +R I +G G WI+ KR + ++ PDA++L++ +
Sbjct: 106 FLGLTIGTATSVPVRAVVSIAMGVGGVF---TWITIKANKRMAMLEEQLPDAIELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ VA ++ PL+ E + E ++ + A ++ R M +R
Sbjct: 163 RVGHPFTSAISIVASEMAD---PLATEFGIIADEAAYGRDIGEALKDMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + K + + PVL L+
Sbjct: 220 AVAVTIQQQSGGNLAEILDGLAKVIRARFRLFRRVKAITAEAKWSGK-FLSGFPVLALIG 278
Query: 315 I 315
I
Sbjct: 279 I 279
>gi|87199541|ref|YP_496798.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135222|gb|ABD25964.1| type II secretion system protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 328
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 99/268 (36%), Gaps = 9/268 (3%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
R + + + +S + +L + + + + L G +
Sbjct: 32 RQRNRNAVNKRLKLLASGMDREAVTNLLKVNHAGSFRRRGIVVRLRRMLARTGM--SITP 89
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ +L + + +IL + F + ++ G P V ++ +
Sbjct: 90 DRILAGMAIATAVAIILLSLLAFSLG--TTITLGTILLICVVGLGFGAGIPYVVLNRSAE 147
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR+ +++ + A+D+ + +G + A+ ++ ++ P+ E L E+++
Sbjct: 148 KRRKRMEQQFAPAVDIFTRALRAGHPVASAISLLSTEMAD---PIGTEFGLVADEIAYGA 204
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
N + R +++ + L G ++ + L L S R + + +A S
Sbjct: 205 NLNDSLVALAERWELEDLHMFAVCLSVQSETGGNLAEILGNLASVIRDRASLYQKVRALS 264
Query: 294 LGPKLTVPM--IIFFLPVLILVIIGPAI 319
+ + M ++ L +L+L +I P+
Sbjct: 265 SEGRASAWMLSVLPALTMLVLFMINPSF 292
>gi|32477853|ref|NP_870847.1| integral membrane protein [Rhodopirellula baltica SH 1]
gi|32448410|emb|CAD77925.1| probable integral membrane protein [Rhodopirellula baltica SH 1]
Length = 306
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/269 (19%), Positives = 106/269 (39%), Gaps = 16/269 (5%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R L+ V + + + ++ AG+ + + +L+ +++ + +
Sbjct: 29 QRRGEALDRLQRDVTRTESSEVEESQISWLRRRMMLAGYSTPAAGTLLVAATILMLVSGI 88
Query: 129 ILGIIWIF-------------GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+++ + L + + + LI + P + + + R
Sbjct: 89 FCALLFRWSGLQQVFLEGIESVPGGLSGMLAPVVIVSPWLIAIILASLPILVVRASRRAR 148
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ R P A+DL E G+ D AL R L+ +L R
Sbjct: 149 VLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRT-QRPDRVLASACRGFQRDLLGGMRR 207
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
VAF R + + T A+IQS++ G S+ ++LR+ + R+ER ++ A SL
Sbjct: 208 SVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAERREKSMAFAQSLA 267
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIID 324
K +P+++ FLP L + +GP ++
Sbjct: 268 TKRVIPLVVCFLPGLFVWPLGPFFTQLLR 296
>gi|330938347|gb|EGH41975.1| type II secretion system protein [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 204
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/200 (21%), Positives = 82/200 (41%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ ++ + L Q + A I G+ P ++ + ++RQ + +
Sbjct: 4 PVGLMVIVILGQLLFFKGIQQPLIAPIFALGAGYLLPKRILATVARRRQKQVVVEISTFI 63
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 64 PLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLMRVDSGLELGEELRKTAALLD 123
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+D + + L Q G SL L RL ++ + L K++V M++F
Sbjct: 124 VDELSDTCVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLF 183
Query: 308 PVLILVIIGPAILSIIDTMK 327
P L++V+ GP ++I +
Sbjct: 184 PALLIVLAGPGFMAISRALG 203
>gi|260431088|ref|ZP_05785059.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414916|gb|EEX08175.1| type II/IV secretion system protein, TadC subfamily [Silicibacter
lacuscaerulensis ITI-1157]
Length = 322
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 106/306 (34%), Gaps = 28/306 (9%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
E + + V + +L+ + + + G S+ + ++
Sbjct: 4 PIEALIYVAIFVGVLALVEGIYLVAFGKS------ISLNSRVNRRLDMLDKGVGREQVLE 57
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+LR + +++ L + + +L++ + + +
Sbjct: 58 QLRKEMQQHMKSQSIPLYSLLADKA--------------QKAAIAFSPRQLIMIMGLVSV 103
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ ++ + A I +G V W+++ +KR + ++ PDA++L+
Sbjct: 104 VAFMGLSIGTSTDIVLRVALSAAIGVGAV-----YAWVNHKAKKRMALLEEQLPDAVELM 158
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G +++ VA ++ PL E + E ++ A ++ R M
Sbjct: 159 VRSLRVGNPFVSSIQIVANEVQD---PLGTEFGVIADECAYGRGVGEALKDMAERLDMQD 215
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R A+ + G ++ + L L R+ + A + K + + F
Sbjct: 216 LRFLAVAVGIQQQSGGNLAEILAGLAKVIRARFRLFRRVNAITAEAKWSGKFLSGFPVFC 275
Query: 311 ILVIIG 316
++ I+
Sbjct: 276 LVFILV 281
>gi|315181053|gb|ADT87967.1| Flp pilus assembly protein TadB [Vibrio furnissii NCTC 11218]
Length = 321
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/312 (14%), Positives = 112/312 (35%), Gaps = 31/312 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ ++ + A+++P+ GS K + R ++ S + + S L+
Sbjct: 6 MFFVLLFFAVVFISQALILPAAGSKAKHKELA--------NRLKETQSNLDEESRSLLQE 57
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
KSL ++ L + ++ + +GF S +
Sbjct: 58 HYLKSLTPLDRR--LVQVKAFASLKKSIELSGFDWSLSQT--------------LGVTTV 101
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ LL + + + + + R S + PDALD++ +
Sbjct: 102 LSLGLGLLLLILGQVWYLCLASVAFVWVCLHMTLQKKISDRLSKFEEQLPDALDIIRRML 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G + Q+ V ++ P+ E T L++ + ++A +RT +
Sbjct: 162 QAGQPLTQSFNEVGNEM---PAPIGVEFKNTFNLLNYGYDLRLAIMQMADRTPTVSMLAF 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ A++ G ++ ++L + R+ + + K S +++ I+ P ++ +
Sbjct: 219 SSAVLLQKETGGNLSENLDKVSKVLRARFKLARKIKTISAESRMSA-WILVLSPFVLFIA 277
Query: 315 IG---PAILSII 323
+ P +S +
Sbjct: 278 MSIIHPGYVSPL 289
>gi|327538076|gb|EGF24766.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 306
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/269 (19%), Positives = 107/269 (39%), Gaps = 16/269 (5%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVD--ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R L+ V + + + + ++ AG+ + + +L+ +++ + +
Sbjct: 29 QRRGEALDRLQRDVTRTDSSEVEESQISWLRRRMMLAGYSTPAAGTLLVAATILMLVSGI 88
Query: 129 ILGIIWIF-------------GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+++ + L + + + LI + P + + + R
Sbjct: 89 FCALLFRWSGLQQVFLEGIESVPGGLSGMLAPVVIVSPWLIAIILASLPILVVRASRRAR 148
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ R P A+DL E G+ D AL R L+ +L R
Sbjct: 149 VLQVSRDLPLAMDLWATLSEGGLGFDAALDRWQRT-QRPDRVLASACRGFQRDLLGGMRR 207
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
VAF R + + T A+IQS++ G S+ ++LR+ + R+ER ++ A SL
Sbjct: 208 SVAFRRLAGRLDVPPLTRFTAAMIQSEQMGASVSETLRLQAEDVRAERREKSMAFAQSLA 267
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIID 324
K +P+++ FLP L + +GP ++
Sbjct: 268 TKRVIPLVVCFLPGLFVWPLGPFFTQLLR 296
>gi|256827715|ref|YP_003151674.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
gi|256583858|gb|ACU94992.1| Flp pilus assembly protein TadC [Cryptobacterium curtum DSM 15641]
Length = 306
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/307 (17%), Positives = 116/307 (37%), Gaps = 10/307 (3%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + +S +A+ L +R K++ + ++ R R
Sbjct: 6 FLVISVLSASFFGFALSWYVLAIRLAHRRRKNLRSFAMGAAPSYPWLSRGSTSLVLSRLR 65
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + + +R AG SE S R ++ G +
Sbjct: 66 FHSRSARLRECQKQERWCQHD--QDLVRKAGLLSEVSAAGWSYTRREAILVGTAGGTLVG 123
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
++ ++ + G+ A + V R+ ++R +AL +L + +
Sbjct: 124 MMV------SLEVSAIGALVGAFCGWRAVPWALGREVVLRKKQMERHLSEALSILCLGLR 177
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+S D+AL + SE +A ++ L R A ++ +R
Sbjct: 178 SGLSFDRALEKYCASFPTMLA--SELSGAHMAWMTGLTTRTEALHAVASKYDSPLIRRVM 235
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++++S R+G + D+L L +E R R +++ K+ +P+ LP ++L+++
Sbjct: 236 DSIVRSMRFGAPLADALDELAAEARLARKALLDEEVMKAPVKMMIPVGTLILPSMLLMVL 295
Query: 316 GPAILSI 322
GP +L +
Sbjct: 296 GPVLLDL 302
>gi|320101694|ref|YP_004177285.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319748976|gb|ADV60736.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 331
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/293 (16%), Positives = 108/293 (36%), Gaps = 22/293 (7%)
Query: 11 ATELAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ E+ + ++ L++ V + + E R+K V + Q+ K SA
Sbjct: 4 SPEMLILGLIGLAAIILVFGVSQLLATPRNNAEDRLKKV------ISAQKAPQGPKASAI 57
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
S ++ S +K L ++I + A +V + L+
Sbjct: 58 SVVKQEVMPSDNPLLKML-----PKLDSIADLYEQAHLGIP-------FTNFLVIVAALM 105
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ ++ L Y L + + +++ + +KR + A P+AL+L
Sbjct: 106 ALPMVVYLATTTLGYAGILPFYVFPIASVLFGVMSIAFLNYMKKKRINDFTAAMPEALEL 165
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +G + L+ VA+++ + P++EE E + + A NR
Sbjct: 166 TGRALRAGHGLGSGLKMVADEM---TGPIAEEFGRVFEEQNLGIPMEEALRAMANRIPTM 222
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
VR A++ + G +G+ L + R ++ + A + +L+ +
Sbjct: 223 DVRFFVTAVVIQRQTGGDLGEVLDKISHLIRQRFEIKGQVAALTGEGRLSGAV 275
>gi|83312844|ref|YP_423108.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
gi|82947685|dbj|BAE52549.1| Flp pilus assembly protein TadB [Magnetospirillum magneticum AMB-1]
Length = 330
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/290 (16%), Positives = 106/290 (36%), Gaps = 29/290 (10%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
L++R+ +VA + R+ + Q+ S +RL+ + R+F +
Sbjct: 38 RARLKRRLAAVAGGQTSSRRTAVRGPQRKSVQARLKAVEGSRQRHFGWRF---------- 87
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+L AG+R E L + + E V + +
Sbjct: 88 -REQLMQAGWRLEVWQY-------------LAGCAVLALLVLGIGEASGLPLVWSGLAAL 133
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+G P + + KR + + DALD+++ + SG+ + + + + ++ P
Sbjct: 134 CLGLGIPKLVLGMAAGKRLKAFASQFADALDVVVRGIRSGLPLGECIAIIGREMPD---P 190
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ E A R M +R L + G ++ ++L L
Sbjct: 191 VGAEFRQITEGTRIGLTLHEALGRAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSD 250
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIIDT 325
R+ + M + +A + + + +I + + V +L ++ P ++++ T
Sbjct: 251 VLRARKRMRDKVQAYAAEARASAAIIGSLPLVVVGMLGLVAPQYIALLFT 300
>gi|332188385|ref|ZP_08390110.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
gi|332011614|gb|EGI53694.1| bacterial type II secretion system F domain protein [Sphingomonas
sp. S17]
Length = 327
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/308 (16%), Positives = 110/308 (35%), Gaps = 26/308 (8%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELE---KRMKSVAVEREILRKQQITSLQKDSA 68
+ + A +F + + G +R+ + + ++ L S
Sbjct: 1 MSMVATLILAAGVFLALVLAMAALSGPSASRSQSRRLAGLRGRVALDLDTPVSPLAAASR 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L T V K + + E + +L G ++++ + V +
Sbjct: 61 GIALATDT------RVDKAFGRLLPNPEKLAKRLNRTG--RDWTVGQYGIACAAVAVGST 112
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
IL + + A+ + +G P + +S + +R + +PDA++
Sbjct: 113 ILLAMIGLPL-----------LLALPMGVGLGLLVPHMVVSMTINRRTTKFIARFPDAIE 161
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL+ + SG+ I + + V ++I G P+ +E + A + +R +
Sbjct: 162 LLVRGLRSGLPITETMSVVGQEIPG---PVGDEFRAVSDRMKIGRTMDAALQETADRLET 218
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A+ G ++ ++L L R M+ + KA S K + II LP
Sbjct: 219 PEFQFFVIAIAIQRETGGNLAETLSNLAEVLRKRAQMKLKIKAMSSESKASA-YIIGALP 277
Query: 309 VLILVIIG 316
++ +I
Sbjct: 278 FVVFAMIW 285
>gi|307294431|ref|ZP_07574275.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306880582|gb|EFN11799.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 333
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/309 (16%), Positives = 111/309 (35%), Gaps = 20/309 (6%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L V I ++ LI + ++ V R + S R
Sbjct: 7 RLFVLILLFAAVILLIEGIAGWLRARATTDR----VVNRRLKMIAAGFERSTVLSKLRRS 62
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
S + L ++ L AG ++ ++ L+ +
Sbjct: 63 DEAVSFDRSTLFGRAGLG-------VMRVLHGAGLTFPARTVLMAML----IATGLLFLM 111
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ I G + V A G +G P + ++ L Q+R+ ++ +P ALD +
Sbjct: 112 VMIGGMAAGYALTAGMFVMAAAFAGALGIMLPMMVLTRLAQRRRKKMEEQFPVALDTFVR 171
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G I AL + +++ P+ E + + E+++ + + A + R M+ +
Sbjct: 172 GLRAGHPIAAALDLLTKEMRD---PIGSEFGIVVDEVTYGADLRDALQRMAERWDMNEMH 228
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVL 310
+L G ++ + L L + R + + +A S ++T M+ + L +
Sbjct: 229 MFVISLSVQSETGGNLAEILENLSAVIRERASLFMKVRALSSEGRMTAVMLTALPILAFV 288
Query: 311 ILVIIGPAI 319
L ++ PA
Sbjct: 289 GLFLVNPAF 297
>gi|94312590|ref|YP_585799.1| type II secretion system protein, transmembrane [Cupriavidus
metallidurans CH34]
gi|93356442|gb|ABF10530.1| type II secretion system protein, transmembrane [Cupriavidus
metallidurans CH34]
Length = 369
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/269 (19%), Positives = 99/269 (36%), Gaps = 6/269 (2%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ ++ S ++L R S+ + L V L GF + +
Sbjct: 102 VADTRRGSIGAQLGGRISERFNQHWLESRLGKAAVSAEEQQLLEQCGFYGVRPRAVFGAL 161
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
RL+VP I L W + A + + +R S+
Sbjct: 162 RLLVPGILAALAFAWKLDVSLAGALAWAFAAFAGGFLLA------KTLLRRRAAQRLRSV 215
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
P +D+L + G+SIDQ+L+ + + G L E+ + + + +R+
Sbjct: 216 ADELPILIDMLRLLQGVGLSIDQSLQIIVTEFGSMLQVLGPELQRSNQQFASGRSREQTL 275
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ L Q DR+G ++ + LR + R + K L K+T
Sbjct: 276 LRIGKLFDDEDLKGLITLLTQVDRHGGAVQEPLRQFGERLQIARKARMKDKIGRLTVKMT 335
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
M++ LPVL+++ GP L ++ +
Sbjct: 336 GVMVVSLLPVLLILTAGPGFLGVMRMLAQ 364
>gi|149175287|ref|ZP_01853909.1| secretion system protein TadB [Planctomyces maris DSM 8797]
gi|148845896|gb|EDL60237.1| secretion system protein TadB [Planctomyces maris DSM 8797]
Length = 323
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/320 (15%), Positives = 107/320 (33%), Gaps = 30/320 (9%)
Query: 9 FDATELA-VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D T + +A + F+ VI S + E R+ + ++ ++ SL K+
Sbjct: 1 MDQTLIISIAAFLGMMAFAGAVIFVIKDFSSSKAEDRLAVITGKK--KSSEESASLLKEE 58
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S + + K NI L A + + + L++ V +
Sbjct: 59 FVKGGLNSLSDQVAHLFDKFG--------NIKLLLEQA--EAPFKADTFLLMTAVTGSMG 108
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ P +W+ +R + PDAL
Sbjct: 109 FAAAWFTNAPGP------------FCPVAALGTGVLPFMWLLFRRNRRFKKFGQQLPDAL 156
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L+ + SG S+ L V +++ P+S E L E + A +N R
Sbjct: 157 ELVGRALRSGHSLSSGLSVVVQEM---PPPISTEFALAYEEQNLGIPIGEALKNMLTRMP 213
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ A++ + G + + L + R + + +A + +++ +++
Sbjct: 214 NLDLKFFVTAVVIQRQAGGDLAEILDKIGYIIRQRFKIMGQVQALTGEGRISGVVLMALP 273
Query: 308 PVLI--LVIIGPAILSIIDT 325
L + + P + ++ T
Sbjct: 274 IALFFAVYYLNPDYVMLLFT 293
>gi|159043674|ref|YP_001532468.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
gi|157911434|gb|ABV92867.1| type II secretion system protein [Dinoroseobacter shibae DFL 12]
Length = 322
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 52/302 (17%), Positives = 107/302 (35%), Gaps = 29/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V + L+ + + + G S+ + +D+ +LR
Sbjct: 8 LIYIGIFVGVLFLVEGIYLVAFGKS------ISLNSKVNRRLDMLDKGATRDAVLDQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S+ L L A+L D+ + + +I+ ++
Sbjct: 62 EMSQH--KTTSILPLYAMLADKAKKGNIA-----------------FSPAALIMIMVLLM 102
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ L V+ +G A +W++ ++R + I+ PDA++L++ +
Sbjct: 103 GVSFVGLTLGTQASLAVRVVASVAIGIGAVYMWVNKKAKQRLAMIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ VA+++ PL E + E ++ + A + R M +R
Sbjct: 163 RVGHPFSSAINIVAKEVAD---PLGTEFGMIADEAAYGRDVTEALKELAERMDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + K + M + P L LV
Sbjct: 220 AVAVSIQSQSGGNLAEILDGLAKVIRARFKLFRRVKAITAEAKWSG-MFLSGFPFLALVG 278
Query: 315 IG 316
I
Sbjct: 279 IN 280
>gi|110833084|ref|YP_691943.1| hypothetical protein ABO_0223 [Alcanivorax borkumensis SK2]
gi|110646195|emb|CAL15671.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 286
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 4/264 (1%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV--- 122
+ R + L N LV + ++L ++ E + ++L
Sbjct: 20 KAGRWERRRKVMGRLHNHGGDETESQDLVALGLSSRLISSALMREDYNEVYEALKLTGKE 79
Query: 123 -VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I L L W+ L + +G VGF + ++ + +
Sbjct: 80 PEKIPTLYLAFCWVLPIALALLGILLKGPFIALFLGVVGFIGSRRYFRSVAKVACHRQNQ 139
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ LL + +E+G+SI++A R A L + + R VA +
Sbjct: 140 EAIEFAQLLSMLLEAGLSIERAFRVAAVQSRPMIPGLVHRLDRFNRLMESGAERGVALDE 199
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
Q+ + + T+ L Q G +I +S+ L+ E + +++ +G K+TV
Sbjct: 200 IGEGKQIPVLHSLTRLLKQGGALGGAISESIEQLILEAQDVEKSRIKEEVNRVGAKMTVA 259
Query: 302 MIIFFLPVLILVIIGPAILSIIDT 325
M+IF +P L +++ GPA ++I+
Sbjct: 260 MMIFMMPALFIIVGGPAGVNIVQA 283
>gi|33596530|ref|NP_884173.1| hypothetical protein BPP1912 [Bordetella parapertussis 12822]
gi|33566299|emb|CAE37212.1| putative membrane protein [Bordetella parapertussis]
Length = 298
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 8/237 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L + + I + AG + + L + + ++ + D +
Sbjct: 67 RLLSWRMRAVIERAIVRAGCDGLVRPCEVAALSLWMAWLGGVVAVTAASLADGWQAWLPL 126
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+W+ +R+ I R P LDL+ +C E+G+ + AL++
Sbjct: 127 APAACAAGAWPA------LWLRRCAARRRQRIARELPFILDLMTLCAEAGLGMHGALQQA 180
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A G PL E ++ + ++ R+ A + R VR AL +D G S
Sbjct: 181 ASH--GPPGPLRELLVQALCDMRAGMPRRQAMQALAARADSPPVRAWVGALAHADAQGMS 238
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+G LR L + R+ER AE+ A K+ +P+I P +V+ P +++
Sbjct: 239 LGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLIACIFPCTFIVLAFPIGYALLQ 295
>gi|238923484|ref|YP_002937000.1| hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
gi|238875159|gb|ACR74866.1| Hypothetical protein EUBREC_1104 [Eubacterium rectale ATCC 33656]
Length = 289
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 92/239 (38%), Gaps = 5/239 (2%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
+ L L +LR + +R+ + ++ +
Sbjct: 53 ELLELIKYNYRTKYDRRLRKEISVLKDDKYADYYIRVTRAQQVTLGYTLFTMSFAMYGLA 112
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
V I+ +V F S+ ++KR + + + + L + +G+ + A
Sbjct: 113 GSMAAVAIFIMFAFVAFYYYGTSASDKIKKRSEELLSDFSNVVSKLALLTNAGLIMRDAW 172
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
VA + L +EM +++ E+ + A +F NR + ++ +IQ
Sbjct: 173 ADVAYNGNTT---LYKEMQISVDEMKNGVSETEAIYHFGNRCIIPEIKKFASTIIQGIEK 229
Query: 265 GTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G S + L+ +ET + + +++ KL +PM + F+ +LI+VI+ P +I
Sbjct: 230 GNSELTALLQEQSAETWNLKRQLVKREGEKASSKLLIPMFLMFMGILIMVIV-PIFTNI 287
>gi|89100215|ref|ZP_01173082.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
gi|89085065|gb|EAR64199.1| putative integral membrane protein [Bacillus sp. NRRL B-14911]
Length = 308
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/310 (13%), Positives = 93/310 (30%), Gaps = 40/310 (12%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ ++ I+ + E ++ K + ++
Sbjct: 4 AVLFGAAVLLFIWGMYNYLGYRKEKKEIQKKYEELFKTENQRS----------------- 46
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + + + + KL A + I + +G +
Sbjct: 47 -SFIAKVGDRFDQTDYAL--ELKKKLVQANIPI--LPSEFYA-------ILIFIGFLMSI 94
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
P + G + + K + +A LL +S
Sbjct: 95 LLFGFFNIPLIISAGISAIGMIAAYW---FIFFIRKNKYTEQLNNQLSEACRLLGNATKS 151
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G++I Q L VA +I + P EE + L + + A R + +
Sbjct: 152 GMTITQGLEVVASEI---NSPAREEFKVLTQNLRLGLDFERALAEMEKRIKTREYKLFIS 208
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
AL+ R G ++ L + +++ K A+ + V I+ +P+ +L ++
Sbjct: 209 ALMIQKRSGGNLTKVLYEMAQTLEERKILRQTIKTATAEQR-FVSYILPAMPIFLLFMLN 267
Query: 317 PAILSIIDTM 326
+I+D
Sbjct: 268 ----NIMDGF 273
>gi|182436318|ref|YP_001824037.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776948|ref|ZP_08236213.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464834|dbj|BAG19354.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657281|gb|EGE42127.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 295
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 26/289 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L +A+ ++++ I+ + + + K L + S RL
Sbjct: 3 LLLALVIGLAVYGAIHGIRMYRADA-------KLPGDLAVALESGASRTSAVGSGIDRLG 55
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R + ++ + + ++ AG +L+ R V + ++
Sbjct: 56 IRWAPAVLRMMGPKAVNKK------RRQIDLAGNPGGLTLDRYAARRAVYGALGVLGAFS 109
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + ++ +L+ G I + ++ R+ I+R PD LD+L +
Sbjct: 110 ML----------LRGQLFLALLMVAFGLFWVEAGIWSAIRVRREHIERTLPDFLDVLAVV 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G+ QAL RVAE G P S+E+ +T+ ++ +R+ AFE R + V
Sbjct: 160 VSAGLGFRQALDRVAEKYEG---PWSDELRITLRQMDMGVSRRQAFEELRRRNDSEQVAM 216
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
L Q + G I ++L + ++ R A +KAA PK T +
Sbjct: 217 FVTTLQQGEELGAPIVETLIQIANDMRRTDAQNARRKAARAVPKATFAV 265
>gi|312199821|ref|YP_004019882.1| type II secretion system F [Frankia sp. EuI1c]
gi|311231157|gb|ADP84012.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
Length = 323
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 54/325 (16%), Positives = 111/325 (34%), Gaps = 14/325 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ I +I A+ P R++ + + S +
Sbjct: 1 MSLAATGALLGLVAGIGLVIVAIRSPRARRIRYADRIEPYLRDTPAPSRLLDDSAAHAAR 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVD--------ENIVNKLRAAGFRSEYSLNILLVVR 120
S + + + L+ +V +L AG R+ S+ +
Sbjct: 61 RSARVAPTPLAAVEALARPFLEDAARRLDRFLGGRAGLVRRLTQAGGRT--SVEEFRTQQ 118
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS-VWISNLVQKRQSSI 179
+++ + ++G + + + P + A+I+ G G W++ ++ R+ +
Sbjct: 119 VILAVAGGLVGAVLLVPRAVIGVGPPPVVGVALIVAGVAGGVVGREWWLTRAIRAREDRM 178
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+P +LL + V +G S AL RVA L E+ L +A+ A
Sbjct: 179 LMEFPTIAELLALAVTAGESPVGALERVARL---THGELGYELRLALADARAGATLVQAL 235
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E RT + + + + GT + D LR + R + + +
Sbjct: 236 EGIATRTTLGSLARFVDGMAVAIERGTPLADVLRAQAVDVREAGRRQLLESGGRKEIAMM 295
Query: 300 VPMIIFFLPVLILVIIGPAILSIID 324
VP++ LP ++ PA++S
Sbjct: 296 VPVVFLVLPTTVIFAFYPALVSFTF 320
>gi|209546475|ref|YP_002278393.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537719|gb|ACI57653.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 317
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/309 (15%), Positives = 107/309 (34%), Gaps = 30/309 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ ++F+ V L + +R ++V +L S R
Sbjct: 1 MTLLLLYAAVFTAALVAVEAILRGYFKTSERHRAVNHRLSLL-----------EVSDDHR 49
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
S L+ + + V + ++ +G + + L I +L +
Sbjct: 50 KTYSDMLKERGAATSWRQTPVMQRLLRFYAQSGIKFDARRFALF------AIAGALLTWL 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + + +L P++ + +R + P+ALD+
Sbjct: 104 VVQFLVPSTLFRIPVFLLICLL-------VPALVVWRARARRMRKFELKLPEALDVANRS 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G + A+ VA ++ P+ E L EL++ A N +R ++ +
Sbjct: 157 LAAGHPLPAAISLVAREMPD---PIGTEFGLLSDELTYGVTLDDALVNLADRVGVEDLNL 213
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPVLI 311
+L G ++ + L+ L R +++A+ KA S ++T + FL +
Sbjct: 214 LAISLSVQAGTGGNLVEILQNLSKTLRDRSMLKAKVKAISSEGRITAIFMSMYPFLLYAM 273
Query: 312 LVIIGPAIL 320
+ + P
Sbjct: 274 IKALSPTYF 282
>gi|315652230|ref|ZP_07905225.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315485536|gb|EFU75923.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 284
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/225 (19%), Positives = 95/225 (42%), Gaps = 8/225 (3%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
KL + + +Y ++R ++L ++ + V I +
Sbjct: 65 KIKLISEIYGKQYGPYYFYLLRGGQITFGIVLTLLMFMITGISGNFKL---VIVGIAVSA 121
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ +++ + R+ + R +P L L + + +G+ I +A +VA G L
Sbjct: 122 LMIWYLDELLNDKINARRDELLRDYPGMLSKLTLLINAGMPIREAWIKVANTNEGI---L 178
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVS 277
+EM T EL A++ F R + +R + +IQ+ + G++ + + LR + +
Sbjct: 179 YQEMKNTAMELYNGMQEAEAYKTFGERCSIKSLRKFSTMMIQNLQKGSNEVVEFLRDMST 238
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E E+ E ++K KL +P+ + ++++II P S+
Sbjct: 239 EAWEEKKHEVKRKGEKASNKLLLPIGL-IFAGVLILIIVPMFNSL 282
>gi|239943899|ref|ZP_04695836.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990353|ref|ZP_04711017.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447362|ref|ZP_06586752.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350309|gb|EFE77213.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 295
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 13/223 (5%)
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+R L + ++ AG +++ R V + ++ +
Sbjct: 56 IRWAPTVLRMMGPKAVNKKRRQIDLAGNPGGLTIDRYAARRAVYGALGILGAFSML---- 111
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ ++ +L+ G I + ++ R+ I+R PD LD+L + V +G+
Sbjct: 112 ------LRGQLFLALLMVAFGLFWVEAGIWSAIRVRREHIERTLPDFLDVLAVVVSAGLG 165
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
QAL RVAE G P S+E+ +T+ ++ +R+ AFE R + V L
Sbjct: 166 FRQALDRVAEKYEG---PWSDELRITLRQMDMGVSRRQAFEELRRRNDSEQVAMFVTTLQ 222
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q + G I ++L + ++ R A +KAA PK T +
Sbjct: 223 QGEELGAPIVETLIQIANDMRRTDAQNARRKAAKAVPKATFAV 265
>gi|294676063|ref|YP_003576678.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
gi|294474883|gb|ADE84271.1| type II secretion system protein [Rhodobacter capsulatus SB 1003]
Length = 322
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 101/292 (34%), Gaps = 28/292 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V++ ++ + + G S+ + +++ +LR
Sbjct: 8 IIYGLIFVAVLLIVEGIYLLVFGKS------ISLNNRVNRRLEMLDKGQRREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ + + I + +K + A + + + +++ I
Sbjct: 62 EATQHSKA-------QGIPFYSLLASKAQKANI---------AFSPMALIGVMVLVSFIA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + +R + +G G W++ KR + PDA++L++ +
Sbjct: 106 FLGLTLGTQASTPVRAVLAVGMGVGGVY---FWVNGKAGKRLKLAEDQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G + A++ VA++I PL E + E ++ N + + R M +R
Sbjct: 163 RVGHPLASAIQAVAKEIPD---PLGTEFGIIADEAAYGRNVVDSLRDLAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
A+ G ++ + L L RS + +A + PK + + F
Sbjct: 220 AVAVSIQQTSGGNLAEVLEGLAKVIRSRFRLFRRVRAITAEPKWSGVFLSAF 271
>gi|126733577|ref|ZP_01749324.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
gi|126716443|gb|EBA13307.1| Putative Flp pilus assembly protein TadB [Roseobacter sp. CCS2]
Length = 321
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/308 (13%), Positives = 111/308 (36%), Gaps = 29/308 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E + + V++ +L+ + G S+ + ++
Sbjct: 1 MISVEPLIYVLIFVAVLALVQGAYLVIFGKS------ISMDGKVNRRLDMLDKGGSREQV 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+LR ++ +++ ++I + + ++ + A + + + I+
Sbjct: 55 LDQLRKEMTQHMKS-------QSIPIYALLADRAQKANI---------VFTPIQLIIMMF 98
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + L +R+ +L+G G W++ +KR + + P+A++
Sbjct: 99 VLSGVSFGLLTILTGVGVPIRILVAVLMGVGGIYV---WVNGKAKKRMNMLAEQLPEAVE 155
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++ + G A+ VA ++ PL E+ + E ++ + ++ R
Sbjct: 156 LMVRSLRVGHPFSSAIAIVAREVPD---PLGTEIGMISDEAAYGRDMGETLKSMAERLDN 212
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A+ G ++ + L L R+ + A + K + + + P
Sbjct: 213 QDMRFLAVAVTIQQTSGGNLAEILDGLAKVIRARFRLFRRVAAITAEAKWSGNL-LSAFP 271
Query: 309 VLILVIIG 316
+ L+ I
Sbjct: 272 IFALMGIN 279
>gi|33601083|ref|NP_888643.1| hypothetical protein BB2100 [Bordetella bronchiseptica RB50]
gi|33575518|emb|CAE32596.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 298
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 8/237 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L + + I + AG + + L + + ++ + D +
Sbjct: 67 RLLSWRMRAVIERAIVRAGCDGLVRPCEVAALSLWMAWLGGVVAVTAASLADGWRAWLPL 126
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+W+ +R+ I R P LDL+ +C E+G+ + AL++
Sbjct: 127 APAACAAGAWPA------LWLRRCAARRRQRIARELPFILDLMTLCAEAGLGMHGALQQA 180
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A G PL E ++ + ++ R+ A + R VR AL +D G S
Sbjct: 181 ASH--GPPGPLRELLVQALCDMRAGMPRRQAMQALAARADSPPVRAWVGALAHADAQGMS 238
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+G LR L + R+ER AE+ A K+ +P+I P +V+ P +++
Sbjct: 239 LGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLIACIFPCTFIVLAFPIGYALLQ 295
>gi|329946365|ref|ZP_08293932.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328527341|gb|EGF54339.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 317
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 14/292 (4%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF---------VKKLNLK 90
L +R ++ E +Q T+ +A + L + + + +L
Sbjct: 27 ALRRRRPTLMARLEPYVHRQPTTSGLLTAPAGLASDGRTVVGLLMASTAGTLNLGRLLDS 86
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+++ +L +G S SL+ + +++ L+L + + +
Sbjct: 87 LGSSADSVRRRLTRSG--SPLSLDQFRLQQVLWSTTALLLVLAAGGLAALVRSVNVPALI 144
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++ G A W+S V KR S I+ PD ++LL + V +G A+ RV
Sbjct: 145 VLSLMATVSGAAARDWWLSRAVAKRLSRIETQLPDVVELLALAVGAGQGPVAAIERVVAL 204
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L +E+ T+ ++ A + R V +A++ + GT + +
Sbjct: 205 GRG---DLIDELGTTLTDIRSGTVLSTALDRMERRVGSVHVTRLCEAIVVALERGTPLAE 261
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
LR ++ R + ++ VP++ LP+ ++ + P + +
Sbjct: 262 VLRSQATDVREAARQDLMEEGGRREIAQMVPVVFLVLPITVVFALFPGLFVL 313
>gi|163738366|ref|ZP_02145781.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
gi|163742217|ref|ZP_02149605.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161384547|gb|EDQ08928.1| type II/IV secretion system protein, TadC subfamily [Phaeobacter
gallaeciensis 2.10]
gi|161388287|gb|EDQ12641.1| type II secretion system protein [Phaeobacter gallaeciensis BS107]
Length = 322
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/302 (14%), Positives = 102/302 (33%), Gaps = 28/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + + G S+ + ++ +LR
Sbjct: 8 IIYGLIFIGVLVLVEGLYLVTFGKS------ISLNSRVNRRLEMMDKGGNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + L R++ + +L++ + +
Sbjct: 62 EMRQHMSAKSIPLYSLLAE--------------RAQKAAIAFSPRQLILIMGGVAAIAFV 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
E P +L +I +G V F W++ KR + I+ PDA++L++ +
Sbjct: 108 GLSVGTSAELPLRLLASVIIGVGAVFF-----WVNKKAAKRMAMIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA ++ PL+ E + E ++ + A + R M +R
Sbjct: 163 RVGHPFSSAVQIVANEVED---PLATEFGVIADESAYGRDVGEALKEMAERLDMQDMRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + + + + F + I
Sbjct: 220 AVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGFPLFCLGGI 279
Query: 315 IG 316
+
Sbjct: 280 LA 281
>gi|163751751|ref|ZP_02158969.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
gi|161328403|gb|EDP99562.1| hypothetical Flp pilus assembly protein TadB [Shewanella benthica
KT99]
Length = 325
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/315 (15%), Positives = 115/315 (36%), Gaps = 26/315 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ EL +++ L A+ +P + + + L + + S
Sbjct: 1 MFSNELIFFGLIFLAVILLSQALFLPVYSPQRANTAL--IRKRLKQLSAHAGDTSFEVSL 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + +L ++++ EN+ +L A + + + L + + +I
Sbjct: 59 LRKSKLEKLTNLGRMLERIEF-----IENLSYRLELADY--KMMGHQFLFLGIFTSMIMA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L +I I + ++ ++ KR +I+ ++PD LD
Sbjct: 112 MLAWYYI------------NEPFMTAFIFVITSFLFNMKLNRDTNKRMDTIEASFPDGLD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G S A++ E++ G PL++E L +++ + ++A F R
Sbjct: 160 VIRRALQAGYSFTDAIKLATEELEG---PLAKEFKLMFVNINYTKDIKLALLGFIQRVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R K S +L+ ++I
Sbjct: 217 VSALAFASAVMVQRETGGNLAENIENLTRVIRQRFKFRRRVKTLSAEGRLSAWILILLPF 276
Query: 309 VLILVII--GPAILS 321
L VI PA +
Sbjct: 277 ALFAVIYLQTPAYVG 291
>gi|84387238|ref|ZP_00990259.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
gi|84377885|gb|EAP94747.1| Flp pilus assembly protein TadB [Vibrio splendidus 12B01]
Length = 321
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/318 (14%), Positives = 123/318 (38%), Gaps = 32/318 (10%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D +++A+ +++ + A+++P+ G K + R ++ +
Sbjct: 1 MDNVSVSLALL-FIAVLFISQALLLPAAGKKAKHKELS--------RRLKETQRNIDAES 51
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ +K L +KL + + + L AG + +L+ L++ + ++
Sbjct: 52 LSLLKEHYNKELSPLDRKLIVISFFGG--LKKMLELAGM--KVALSRFLLIVSLCAVLLS 107
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ I+ + + +++ N V R + + P+ALD
Sbjct: 108 LISIM------------TNQVWFISVGAFIFVWVIAYLFVQNRVTYRMARFEEQLPEALD 155
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + Q+ V E++ P+ E T L++ + ++A R
Sbjct: 156 IIRRALQAGQPLVQSFNEVGEELPD---PIGVEFKNTYNLLNYGYDLRLAILQMTERVPT 212
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + A++ G ++ ++L+ + R+ +E + K S +L+ I+ P
Sbjct: 213 VSMLAFSSAVMLQKETGGNLSENLQKVSEVLRARFKLERKIKTLSAESRLSA-WILTLSP 271
Query: 309 VLILVII---GPAILSII 323
+ + P + +
Sbjct: 272 FGLFFALRVASPEYIEPL 289
>gi|153006802|ref|YP_001381127.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
gi|152030375|gb|ABS28143.1| type II secretion system protein [Anaeromyxobacter sp. Fw109-5]
Length = 320
Score = 93.3 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 46/316 (14%), Positives = 111/316 (35%), Gaps = 29/316 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ A+ IF+ + A+ + + V R ++++ ++ K A
Sbjct: 4 LLIAGLALGIFAAVEAIYYGA----------QFVGDRRRAELRRRLRAIGKAGALDAELL 53
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R + R + + + +++ L A R + L
Sbjct: 54 RRGRIARREWAQGLVAPLPWAKSLEQLLEQADSR--------------WTVAQLFAFSSA 99
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G LL +L + IL+G + AP + + + +R I P+AL+++ +
Sbjct: 100 AAGSGLLLGLVLRLGLPITILLGLMVGAAPFLSVLSARSRRSQKISEQLPEALEMMARSL 159
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRN 253
+G ++ A + VA G P+ E + E + + A + R V+
Sbjct: 160 RAGHALTSAFQVVA---GEMPEPVCVEFARSYDEQRLGLSLEQAVLHMAERCPGNSDVKI 216
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + G ++ + L + R + +A + + + ++ LP ++ +
Sbjct: 217 FAVSAVIQRETGGNLAEILEKISDTIRQRYRFYGKLRALTGEGRASA-WVLGLLPFIVAL 275
Query: 314 IIGPAILSIIDTMKDH 329
+ + T+ ++
Sbjct: 276 AVSVMNPGYLRTLAEN 291
>gi|220913385|ref|YP_002488694.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860263|gb|ACL40605.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 316
Score = 93.3 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 47/319 (14%), Positives = 113/319 (35%), Gaps = 38/319 (11%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+A+ I + +++ + + + + +++ S+Q S
Sbjct: 3 TDVPVALFIVGLILVYASVALLFVFVWKG-----------RSGVPMSRRRPDSIQHSSGL 51
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+RL + L LK +L AG E L++ + ++ +
Sbjct: 52 TRLTNQTVGVLNR-----GLKKRPTSIFSRERLEQAGLNKE--PGDYLLMAGAITLVSTV 104
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G IL + + ++ L +R+ + PD L +
Sbjct: 105 TAFFVGG-------------IGIGILALILTPVLLYLGLNMLTARRRKTFDAQVPDTLQM 151
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +G S+ +A+ A++ G P++EE+ + E + + + RT +
Sbjct: 152 FSGGLRAGHSLLRAIDAAAQENQG---PMAEELSRIVNETRIGRDLGESMADVSRRTASE 208
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+QA+ G + + L + R ++ + +A S +++ M++ LP+
Sbjct: 209 DFYWISQAIEIHREVGGDLAEVLDHVGETIRDRNQVKGQVRALSAEGRISA-MVLMALPI 267
Query: 310 LILVII---GPAILSIIDT 325
L+ + + P + T
Sbjct: 268 LMFIGLVTFNPTYARVFTT 286
>gi|326797331|ref|YP_004315151.1| type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
gi|326548095|gb|ADZ93315.1| Type II secretion system F domain protein [Marinomonas mediterranea
MMB-1]
Length = 327
Score = 93.3 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 47/296 (15%), Positives = 102/296 (34%), Gaps = 18/296 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
V IFSLI + + K+ K L++Q + + S R++
Sbjct: 6 LLPVVIFSLILGAFLLVYLGVQSRKKAKQSEAFLTSLKQQLTMNQRAAVEESMNIKRNNA 65
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
I + ++SL + ++ F
Sbjct: 66 E----------SFWFDLPIIGGWINR--IWLDFSLLGWQEKWRSRATLLATPCLLLGFTL 113
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
K ++P V + + N + K K+ P A+D ++ V++G+
Sbjct: 114 GKSSQFPIGASVLLSLGFFFALIVL---LYRNAMGKHLKEFKQNLPQAIDSIVRVVKAGV 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
A +A ++ G PL++E+ L LS + + A ++ R ++ R L
Sbjct: 171 PATNAFGLIANNLPG---PLAKELALIDKWLSLGLSLRQAMQDSAIRVPLNEYRFFAVIL 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + G + D+L L R + + + +A + + + ++ P+ + +
Sbjct: 228 VINQEAGGRLSDTLERLSETLRERQELALKIRAKTSEVRASAVIVAMLAPLSLAYM 283
>gi|77462449|ref|YP_351953.1| putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
2.4.1]
gi|126461327|ref|YP_001042441.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221638312|ref|YP_002524574.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
gi|77386867|gb|ABA78052.1| Putative Flp pilus assembly protein TadB [Rhodobacter sphaeroides
2.4.1]
gi|126102991|gb|ABN75669.1| type II secretion system protein [Rhodobacter sphaeroides ATCC
17029]
gi|221159093|gb|ACM00073.1| Type II secretion system protein [Rhodobacter sphaeroides KD131]
Length = 322
Score = 92.9 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 50/302 (16%), Positives = 110/302 (36%), Gaps = 29/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ I V++ L+ + + G S+ + ++ +LR
Sbjct: 8 IIYILIFVAVLLLVEGIYLTVFGKT------ISLNSRVSRRLALLEKNQNREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S+ + N + I + + +K + A + +V I+ L+ + +
Sbjct: 62 EMSQHM-------NARGIPLYAILASKAQKANIA--------FSPKALVGIMVLLSAVAY 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ P AV++ + W++ +KR + I+ PDA++L++ +
Sbjct: 107 LGLTIGTSAAPLVRGAVAVVMGVGAVYV----WVNGKAKKRMALIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA+++ PL E + E ++ + F R + +R
Sbjct: 163 RVGHPFSSAIQIVAKEVPD---PLGTEFGVIADEAAYGRDVAECIRAFAERMESQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L RS + KA + K + + P++ LV
Sbjct: 220 AVAVTIQQQSGGNLAEILEGLAKVIRSRFKLFRRVKAITAEAKWSG-TFLSAFPIVALVA 278
Query: 315 IG 316
I
Sbjct: 279 IS 280
>gi|311743552|ref|ZP_07717358.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312682|gb|EFQ82593.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 314
Score = 92.9 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/264 (14%), Positives = 88/264 (33%), Gaps = 7/264 (2%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
SA + R + + L +++++ + + + L + + VP
Sbjct: 25 DGSAPRISKERRTGRPEASQEPLTKVMYGQLVDVIDRFLRSSGWKPFRTSELELADIKVP 84
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
L+ + L + V + + +W+ KR+
Sbjct: 85 AAQLVAWVFLGSAAGFLAGLVLRQNVWLGLAAAVIAPVGAKMWVKMRTAKRRREFNAQLD 144
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L +L + +G S QA+ A P+ +E+ + E + + +
Sbjct: 145 GMLQMLASSMRAGQSFQQAMGSCAR---DADSPMQDELTRILNENRLGRDIIASMNDTAE 201
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + +A+ + G ++ + + + R + + A + + + I+
Sbjct: 202 RMECEDFVWLAEAVELTRESGGNLNEIIDRVAQMIRDRSEIREKVHAYASEGRFSS-YIL 260
Query: 305 FFLPVLILV---IIGPAILSIIDT 325
LP+LI V I P L + +
Sbjct: 261 MSLPLLIAVAYSFITPGYLDPLFS 284
>gi|323702117|ref|ZP_08113785.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323532999|gb|EGB22870.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 323
Score = 92.9 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 119/313 (38%), Gaps = 30/313 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A T +++ L+ + + E+++RM+ + R Q + +++ R
Sbjct: 6 IAFLTFITVALLVLGLYQLLTKDTWEIKRRMQKITARTFRQRMAQTNCGENQTSTWRQLL 65
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + + +L A ++LV+ L + L +
Sbjct: 66 ARWSVI--------FAKRGISQRMEAELIKADIPLRGEEFVVLVLLLGLVSSLFFLML-- 115
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L +++G G P + + QKR + DAL ++ +
Sbjct: 116 ------------TLNATISLIVGICGLIIPCLILRMARQKRLAKFNAQIGDALVIMANSL 163
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SG S QA+ V +++ P+S E E+S + A +N R + D +
Sbjct: 164 RSGFSFLQAMDMVRKELPN---PISREFGRAFQEMSLGTPTEEALQNMAQRVKSDDLDLV 220
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LI 311
A++ + G ++ + L + R ++ + ++ + +++ M+I FLP +
Sbjct: 221 ITAVLIQRQVGGNLAEVLDNIADTIRERVRIKGQIRSITAQGRISG-MVIGFLPFALAAL 279
Query: 312 LVIIGPAILSIID 324
+++I P + +
Sbjct: 280 MLVISPQYIMTLF 292
>gi|307332439|ref|ZP_07611503.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881908|gb|EFN13030.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 295
Score = 92.9 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L + ++ AG +++ R V + ++ + LL
Sbjct: 63 LRLMGEKRVARVRRRIDLAGNPGGLTVDRYAARRAVYGALGFGGALVMLIKGQVLLALLL 122
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
G V I V++R+ +I+R PD LD+L + V +G+S QAL R
Sbjct: 123 VA----------FGLFWIEVGIWAAVRERKDAIERTLPDFLDVLAVVVSAGLSFRQALDR 172
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VAE G P ++E+ +T+ ++ +R+ AFE R + V AL Q + G
Sbjct: 173 VAEKYEG---PWADELRITLRQMDMGVSRRHAFEELRKRNDSEQVAQFVTALQQGEELGA 229
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I ++L + ++ R A ++AA PK T+ + F +P +++++ +
Sbjct: 230 PIVETLIAIANDMRRTDAQNARRRAARAVPKATMVITTFMVPGTMVLLVAGFFIG 284
>gi|254476377|ref|ZP_05089763.1| type II secretion system protein [Ruegeria sp. R11]
gi|214030620|gb|EEB71455.1| type II secretion system protein [Ruegeria sp. R11]
Length = 322
Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 44/302 (14%), Positives = 103/302 (34%), Gaps = 28/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + L+ + + + G S+ + + ++ +LR
Sbjct: 8 IIYGLIFIGVLVLVEGLYLVTFGKS------ISLNSKVNRRLEMMDKGANREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + L R++ + +L++ + +
Sbjct: 62 EMRQHMSAKSIPLYSLLAE--------------RAQKAAIAFTPRQLILVMAGVAALAFV 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
E P ++ +I +G V F W++ KR S I+ PDA++L++ +
Sbjct: 108 GLSVGTSAEVPLRVMASIIIGVGAVFF-----WVNKKAAKRMSMIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A++ VA ++ PL+ E + E ++ + A + R M +R
Sbjct: 163 RVGHPFASAVQIVANEVED---PLATEFGIIADESAYGRDVGEALKEMAERLDMQDMRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + + + + F + I
Sbjct: 220 AVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGFPLFCLGGI 279
Query: 315 IG 316
+
Sbjct: 280 LA 281
>gi|108759913|ref|YP_632817.1| type II secretion system protein F domain [Myxococcus xanthus DK
1622]
gi|108463793|gb|ABF88978.1| type II secretion system protein F domain protein [Myxococcus
xanthus DK 1622]
Length = 281
Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 9/214 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L + +I I + + ++ P ++ GF P + + + ++R
Sbjct: 48 FLFIDPRQMLILNIACMCLLGILTYIIFNP-----IMAVVATVFGFFLPMLMVKHYRKRR 102
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
DAL + ++G++ QA+ VA PLS+E L + E+
Sbjct: 103 IKKFNVQLVDALQAMANAFKAGLTFPQAIEHVAR---EAMPPLSQEFGLFVKEVKLGVPL 159
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A N R D + + + + G ++ + + + R +E + A +
Sbjct: 160 EEALINMGRRVGSDDLELVVVSTNIARQLGGNMAEMFETISTVIRERFRLEGKIDALTSQ 219
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
KL I+ +P ++ +++ +++ M DH
Sbjct: 220 GKLQG-WIVAAMPGVLGMVLNYMRPDLMEPMMDH 252
>gi|330811032|ref|YP_004355494.1| type II secretion system protein; membrane protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379140|gb|AEA70490.1| putative type II secretion system protein; putative membrane
protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 328
Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 117/314 (37%), Gaps = 31/314 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L +++F L VV+P G +G++ KR++ E L
Sbjct: 10 LIFLGMVFIAVFLLSQGVVVPVFGEAGKMRKRIRGRLHVLEKANHLPNMQT-------VL 62
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + L + L+ + N+ + AG +LL + I+ G
Sbjct: 63 RQKYLTRLSPLEAR--LEQLPFMANLTQLIEQAGHEYRAYRVMLLGL-----ILGGAAGA 115
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + P + I KR ++ + PDALD +
Sbjct: 116 LVLMLSQVWWLALLAAFALTWL---------PVLKILRDRNKRFAAFEEGLPDALDAMCR 166
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G ++ LR VAE+ G P+++E +T +++++ + + A R V
Sbjct: 167 ALRAGHPFNETLRLVAEEHKG---PVAQEFGMTFSDINYGNDVRRAMLGLLERMPSMTVM 223
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI- 311
+++ G ++ + L L R + + + S +++ ++ +P ++
Sbjct: 224 MLVTSILIHRETGGNLTEVLERLSRLIRGRFRFQRKIRTLSAEGRMSA-WVLVAIPFVLA 282
Query: 312 --LVIIGPAILSII 323
+V+ P+ + ++
Sbjct: 283 IAIVLTSPSYMPVL 296
>gi|149200851|ref|ZP_01877826.1| type II secretion system protein [Roseovarius sp. TM1035]
gi|149145184|gb|EDM33210.1| type II secretion system protein [Roseovarius sp. TM1035]
Length = 322
Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 51/301 (16%), Positives = 103/301 (34%), Gaps = 29/301 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V + L+ + + G S+ + S ++ +LR
Sbjct: 8 IIYALIFVGVLVLVEGIYLTVFGRS------ISLNNRVNRRLEMLDKSGNREEVMEKLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L+ A + + + ++ + L ++
Sbjct: 62 EMQQHLKA----------------RRLPLYAILSDKAQKAAIAFTPRQLILLMVGLSVLA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + +R A + IG G WIS KR + ++ PDA++L++ +
Sbjct: 106 FIGLSVATDTAAPVRAIASVGIGVGGIF---TWISMKASKRMALLEEQLPDAIELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ VA ++G PL+ E + E ++ + A + R M +R
Sbjct: 163 RVGHPFSSAIGIVATEVGD---PLATEFGIIADEAAYGRDMGEALKEMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + K + + P+L LV
Sbjct: 220 AVAVTIQQQSGGNLAEILAGLAQVIRARFRLFRRVKAITAEAKWSGK-FLSAFPLLALVG 278
Query: 315 I 315
I
Sbjct: 279 I 279
>gi|88856328|ref|ZP_01130987.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
gi|88814412|gb|EAR24275.1| hypothetical protein A20C1_00270 [marine actinobacterium PHSC20C1]
Length = 301
Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 51/295 (17%), Positives = 108/295 (36%), Gaps = 9/295 (3%)
Query: 14 LAVAITTAVSIFSLIYAVV--IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LA AI ++ ++++V IP L R+ + ++ + +
Sbjct: 5 LAWAIVAGIAGGLGLWSIVSLIPRFSHPTLATRVAPYVI--DVSSGAREHLAPRSVGPLP 62
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ ++++ + E I +LR AG SE S +L+ + +LG
Sbjct: 63 VFGVLLVPTLRWLRETLATVVGGGELIARRLRQAG--SELSTEAYRSQQLLAVLAGAMLG 120
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+++ + P + V++ G VG A + + R + P L+ L
Sbjct: 121 VVFDIAVANQQQVPLVAQTVLVVVGGVVGITARDYLLQRAARARIRRLTAELPVVLEFLA 180
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ + +G I A+RRV++ GG LS E+ +A ++ ++
Sbjct: 181 LSLSAGEGILDAVRRVSQVSGG---ELSNELARVVASVNTGLPFGETLGALARELELPPF 237
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + GT + + L+ + R E E + A + P++
Sbjct: 238 NRCVDQILGALDRGTPLSEVLQAQAQDAREESKRELLELAGKKEVAMLFPLVSGL 292
>gi|254483289|ref|ZP_05096521.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
gi|214036512|gb|EEB77187.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
Length = 296
Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 55/299 (18%), Positives = 110/299 (36%), Gaps = 23/299 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ T L + ++ + + I L++R E+ ++ + + ++
Sbjct: 1 MNQTLLIAQVAAFIATSCTV--LFIGFSIRDALKRR------EQLWIKIRASHVSKAEAG 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ +RT +++R L L AG + + +
Sbjct: 53 AEFVRTVLLETVRPMSSVQKLLR-----QTQKNLLRAG------VGRNAEDYVADGLWQG 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG I I LL P + + + +R I R P ALD
Sbjct: 102 LLGGISIMLAVSLLSSPVSGLLLGTAGGVLWAMWIKPSMLDSNATQRSRLIYRRIPYALD 161
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L ++ +E+G ++ + L E+I Q+ PL+EE+ +T+ E+ + A R +
Sbjct: 162 LSVLVLETGGTLREGL----EEISLQNDPLAEELRITLLEMDSGSTQAAALRGMGQRVGL 217
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + A+ + + G + +L R RL E EK A K+T P ++ +
Sbjct: 218 ESLETILTAINRGEETGAPMVATLITQAEMFRERRLQEIEKMAVEAPTKMTFPNMMIMV 276
>gi|317133735|ref|YP_004089646.1| Type II secretion system F domain [Ruminococcus albus 7]
gi|315450197|gb|ADU23760.1| Type II secretion system F domain [Ruminococcus albus 7]
Length = 292
Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 82/200 (41%), Gaps = 5/200 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ +++ + + + I+I +VG P +S +K + + + + AL
Sbjct: 62 LILMLFFPLTGSVGAWFLSKELWLSIIIFFVGLFIPKFIVSYTEKKHKKNFEERYARALR 121
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L + +G+++ QA+ + + + +E +++ + AF + R
Sbjct: 122 QLSSSLRAGMTLQQAVEDLCK-CPFIHYEIKKEFRQINSDIQLGFSISEAFGHMAERIPT 180
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V++ A+ G S +S+ ++ + S ++ E K K+T+ + + LP
Sbjct: 181 ADVKDVVSAIKMQSLVGGSEAESIEIITNNINSRMMLRKEIKTLFASTKMTI-IGMDILP 239
Query: 309 VLILVII---GPAILSIIDT 325
+I++ + P + +
Sbjct: 240 AIIILFLYYSSPMYFRPLFS 259
>gi|300856046|ref|YP_003781030.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
gi|300436161|gb|ADK15928.1| putative type II secretion system protein [Clostridium ljungdahlii
DSM 13528]
Length = 320
Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 50/315 (15%), Positives = 114/315 (36%), Gaps = 30/315 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + ++ I V+I + +++K QK + + R
Sbjct: 3 YVIVTAIFLMVWLFISTVLIALFSKDKPIRKLKYFDE--------DYAISQKYKDNKKDR 54
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K+L + K+ L D+ + +L A L++ I
Sbjct: 55 ISILKTLSTLIPKIWLNK-KKDKKLEIELMKADLSITVEE--------------LLVIKI 99
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L + +ILI + + P I + R + + ++
Sbjct: 100 LFSSAFAFLAFAVFKNYFIIILIYILIWNVPQFIIRKRKKDRIKHFDSELNEGITIISNS 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++G S QA+ V+E S P S+E + E+S + + A +N +R + + +R
Sbjct: 160 LKAGYSFLQAIAVVSE---ETSDPFSKEFKKLLKEMSLGISEEDALKNLLSRVESEDLRL 216
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++ G ++ + L + R + +++E K + +L+ +I+ +P+ + V
Sbjct: 217 IVNVILIQKDIGGNLSEVLDNISETIRERQKIKSELKTLTAQGRLSG-IILMLIPIFLGV 275
Query: 314 IIGPA---ILSIIDT 325
I + ++ T
Sbjct: 276 TIYLFNKEYILLLFT 290
>gi|297202077|ref|ZP_06919474.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|297148030|gb|EDY58317.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 296
Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 113/291 (38%), Gaps = 16/291 (5%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+++ + V + + +++ ++ S + + S + +
Sbjct: 1 MIAVGLALLMAVSVWGVFAGIRMYRAEAKLPSDLVLALEVGSTRTGAVDSLIDRMGMRYA 60
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
++ + K + K+ AG ++N R V + + ++++
Sbjct: 61 PTVLRLMGPKQVAKY---RRKIDLAGNPGGLTINRYAARRAVYGFLGTLGFLVFLLRGQV 117
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L+ G V I + ++ R+ I+R PD LD+L + V +G+
Sbjct: 118 LVALLLLA----------FGAFWTEVGIWSAIRVRKDVIERTLPDFLDVLAVVVSAGLGF 167
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
QAL RVA G P ++E+ +T+ ++ +R+ AF R + V AL Q
Sbjct: 168 RQALDRVASKYEG---PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQ 224
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ G I D+L L + R A +KAA PK T+ + F +P +
Sbjct: 225 GEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKATMMITTFMVPATM 275
>gi|42521750|ref|NP_967130.1| hypothetical protein Bd0110 [Bdellovibrio bacteriovorus HD100]
gi|39574280|emb|CAE77784.1| TadB [Bdellovibrio bacteriovorus HD100]
gi|51468908|emb|CAE47781.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 291
Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 82/203 (40%), Gaps = 5/203 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+I L++ + + I G+ P + + + ++R +
Sbjct: 61 TLIILLMSFGLGALVFLIFWPSVLMGAFFGASITVAGWQLPLLLVRMIYEQRCTKFVDQM 120
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
D L ++ +++G + ++++RV E +G P+S+E + ++ + + A +
Sbjct: 121 VDGLTIMANGIKAGSNPQESMKRVVEIMGN---PMSQEFAQVLYQMQVGDSFESALNDLG 177
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
NR V+ ++ G ++ ++ + +V R + +E + +A + + ++
Sbjct: 178 NRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQALTAQGMMQGIIV 237
Query: 304 IFFLPVLILVIIG--PAILSIID 324
+L+ V + PA + +
Sbjct: 238 TLIPFILMAVFLVIDPAFIKPMF 260
>gi|302559125|ref|ZP_07311467.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476743|gb|EFL39836.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 308
Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/314 (13%), Positives = 103/314 (32%), Gaps = 10/314 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+L + + + +Y +V + + + VA + + + + +
Sbjct: 4 QLTMPVVIGAVLGLGVYVLVRALMPTKRSA--VSQVARIDAMRARGTAYESARTTQDTGR 61
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG- 131
+ V + L+ ++ L E S L ++++ + L G
Sbjct: 62 LGTLRAEMGVRVAEFYLQQGWEQRSLRADLA----VLERSWEKFLATKVLLSVAGLFFGP 117
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + + V +L + F P + + ++ ++R LDL+
Sbjct: 118 FLFAIVWTLGFGDSPIIPVWLALLCAALFFFLPDLEVRRDAADKRRDLRRVIGAYLDLVS 177
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ + G + +AL AE + L A + ++ A ++ +
Sbjct: 178 MSLAGGRGLPEALMAAAE-VSDGWATHRIRNALADARI-TGISQWQALGQLGEELGVEEL 235
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ + +L G + +SL R L E E A + V + +
Sbjct: 236 KDLSASLALVADDGAKVRESLASRAETMRHRELSEIEGSAGEKSQSMLVAQ-LLLCAGFL 294
Query: 312 LVIIGPAILSIIDT 325
+ +I PA + +
Sbjct: 295 VFLIFPAAMRVFQV 308
>gi|20094143|ref|NP_613990.1| hypothetical protein MK0706 [Methanopyrus kandleri AV19]
gi|19887150|gb|AAM01920.1| Predicted membrane protein [Methanopyrus kandleri AV19]
Length = 362
Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 12/269 (4%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFR 108
ER+ ++ L++ + + L+ AG R
Sbjct: 61 EGERDRTAEEINERLRRLCRERANVLETLIEMVQSLSPTLGNRFRGLAPDREVLQKAGLR 120
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ II ++G++ L P L+V I+ +G P + +
Sbjct: 121 ISPAAF------ATFMIISGLMGVVLTSVPAALFPLPLPLKVLGPIMSFLLGMVVPRMMV 174
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ L+++R+ I R P A+ + V +G+S+ ++++ ++E LSEE I E
Sbjct: 175 TILIRRREGEIARQLPYAIRQMATEVSAGLSLIESMKSISE---SDYGALSEEFERVIRE 231
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
++ VA + NR +D +R + + Q+ G +I +L L E E
Sbjct: 232 INSGTPINVALQRMANRWNVDGLRTMVRFITQAMESGANIAKTLMTLADEIAHELRQRYR 291
Query: 289 KKAASLGPKLTVPMIIFFL--PVLILVII 315
+ L L P I+ L P L+ V +
Sbjct: 292 EYGHKLQA-LAFPYIMLTLVIPTLVTVAM 319
>gi|154505643|ref|ZP_02042381.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
gi|153794082|gb|EDN76502.1| hypothetical protein RUMGNA_03182 [Ruminococcus gnavus ATCC 29149]
Length = 407
Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 4/176 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
I+ + + R+ + +P+ + + + +G+ +A ++A
Sbjct: 231 FVLGIVAAALMLVLEKQNEIQKKKARRHQLAMDYPEFISTFTLYLGAGMPARRAWFQIAS 290
Query: 210 DIG--GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT- 266
+ + EEM+ T+ E+ +E+F R + R L Q+ R GT
Sbjct: 291 VYRQQENTRYVYEEMVYTMREMQRGTPESECYEHFGMRCGLPVYRKFAVMLSQNLRKGTK 350
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + L+ + ER A K +L PM + L V++++I+ PA L+I
Sbjct: 351 GLAELLQREAAGAFEERKAAARKLGEETSTRLLGPMFL-MLGVVLMIIVVPAFLTI 405
>gi|295837158|ref|ZP_06824091.1| type II secretion system protein [Streptomyces sp. SPB74]
gi|197699510|gb|EDY46443.1| type II secretion system protein [Streptomyces sp. SPB74]
Length = 312
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/316 (13%), Positives = 97/316 (30%), Gaps = 10/316 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSL--GSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + + +Y +V L L+ + A+ + + +
Sbjct: 4 QWIGPVIAGAVVGLGLYVLVRALLPGARSPLQTVARVDALRARGAYEPPVHRGGEHEEDD 63
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
SL + + ++ L + S L ++++ + L+
Sbjct: 64 GRFASARASLGVRLAAFYRQQGWELRSLRADLA----VLDRSWERFLATKVLLGVAGLVF 119
Query: 131 G-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G ++ L + V + G + F P + I Q ++ ++R LDL
Sbjct: 120 GPAVFAIVVVLGLGRSPLVPVWLALACGVLFFFLPDLEIRRDAQDKRRDLRRVIGAYLDL 179
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + + G + +AL AE G + + A ++
Sbjct: 180 VAMSLAGGRGLPEALLAAAEVSDGWAS--RRIRDALHDARITGHTQWYALGRLGEELGIE 237
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ + +L G + +SL R L E E A + + +
Sbjct: 238 ELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIEGSAGEKSQSMLIAQ-LLLCAG 296
Query: 310 LILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 297 FLVFLIFPAAMRVFQM 312
>gi|116671472|ref|YP_832405.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611581|gb|ABK04305.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 316
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/315 (15%), Positives = 114/315 (36%), Gaps = 28/315 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A+T A+ ++ V + + + + L +++ + S ++
Sbjct: 1 MIAMTPAIFAVGMVLLVGAVFVIVFVVFR----PSHGYVALSRRRPFGGAERSPLTKFTD 56
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ + N L AG + + +V+ ++ +G+I
Sbjct: 57 STVGAVERVLAGGNKSPGE-----RATLDQAGL--KIARTDFIVLVGATAVVAGFVGLIL 109
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+L + ++++S L Q+R++ + D L ++ +
Sbjct: 110 QGPV-------------FAVLFAGLTPILAAMYLSFLTQRRRARFEAQLGDTLTMVSGGL 156
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S+ +A+ VA+ S P + E + E + Q + + R + +
Sbjct: 157 RAGHSVLRAIDAVAQ---EASEPTATEFSRVVNETRLGRDLQDSLNDVSLRMKSEDFNWM 213
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
QA+ + G + + + R ++ KA S KL+ +I+ LPVL+ ++
Sbjct: 214 AQAIEINREVGGDLAEVFDQVGETIRERSQIKGMVKALSAEGKLSA-IILMALPVLLFIL 272
Query: 315 IGPAILSIIDTMKDH 329
IG A + H
Sbjct: 273 IGLANPKYSGQLTGH 287
>gi|46201039|ref|ZP_00055942.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 331
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/327 (14%), Positives = 105/327 (32%), Gaps = 32/327 (9%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSL----GSGELEKRMKSVAVEREILRKQQI 60
FDL + +A+ AV + +L L++R+ +VA ++
Sbjct: 1 MFDLLERMPAEIAVLVAVMLVTLAVLGWSLFTLLHGPRARLKRRLAAVAGGSHGAERRLA 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
+ + + + + +L AG+ E
Sbjct: 61 GRMPQRKSVQARLKAVEGARARNFGW----------RLREQLLQAGWNLEVWHY------ 104
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L L + V + + +G P + + KR +
Sbjct: 105 -------LAGSGGLTLAVFALGQVLGLAMVWSGLAALCLGVGVPKLVLGVAAGKRLKAFT 157
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ DALD+++ + SG+ + + + + ++ P+ E A
Sbjct: 158 AQFADALDVVVRGIRSGLPLGECIAIIGREMPD---PVGAEFRQITEGTRIGLTLHEAMT 214
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R M +R L + G ++ ++L L R+ + M + + + + +
Sbjct: 215 RAVERMPMAEMRYFAIVLAIQQQTGGNLAETLAKLSEVLRARKRMRDKVLSYAAEARASA 274
Query: 301 PMI--IFFLPVLILVIIGPAILSIIDT 325
+I + L V +L ++ P + ++ T
Sbjct: 275 AIIGSLPLLVVAMLGMLAPQYIGVLFT 301
>gi|89899610|ref|YP_522081.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89344347|gb|ABD68550.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 322
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/321 (15%), Positives = 116/321 (36%), Gaps = 33/321 (10%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + + A+ +++ + V E + + +E + + +
Sbjct: 1 MDLSFVLFAVVAFLAVVLALEGVYNVWASRSSPEAKRIATRIE--------ALAGEASAP 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF- 127
+S RTR + L G + + + +
Sbjct: 53 ASIERTRQRSRMPRLNGLLG-----------------GLPAGRRMQHFVTASAMAVSAAE 95
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
LI+ + + + L + ++G P ++N + R I+R +P+AL
Sbjct: 96 LIVMSVALGAFGLFLPGLLGKPLIFGAVLGLGLAVLPWWRVANRRRVRIERIERQFPEAL 155
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + +G S A++ VA+++ PL + + E+++ A N R
Sbjct: 156 DLMSRAMRAGHSFPSAVKMVADEMTD---PLGHDFRVLFDEMNYGVPTNDALANLAERVP 212
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V A++ G ++ + L + R + E + S KL+ +I+ L
Sbjct: 213 VPDVSYFVVAVMIQRESGGNLAELLDKISLIVRERLKLLGEVRTLSAEGKLSA-IILTAL 271
Query: 308 PV---LILVIIGPAILSIIDT 325
P L++ ++ P ++++ T
Sbjct: 272 PFGVGLVVNLVNPKFMAVLWT 292
>gi|27365113|ref|NP_760641.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37680836|ref|NP_935445.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|320155496|ref|YP_004187875.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|27361259|gb|AAO10168.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|37199585|dbj|BAC95416.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|319930808|gb|ADV85672.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 321
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/317 (15%), Positives = 119/317 (37%), Gaps = 30/317 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + ++ + A+++P+ GS K + R ++ + A
Sbjct: 1 MDDITYFF-VLLFFAVVFISQALILPAAGSKAKHKELSQ--------RLKETQMNLDEEA 51
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ KSL +L + ++ + +G ++SL L+V ++ + +
Sbjct: 52 RSLLQEHYLKSLSPL--DRSLVKVAAFASLKKSIELSGL--DWSLAQTLMVCSIISLTTI 107
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +I + G + A ++ + R + + PDALD
Sbjct: 108 VTMVILA------------QPWYLAVAGGSAIWFALQFFLQKRITDRLNRFEEQLPDALD 155
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V ++ P+ E T L++ + ++A RT
Sbjct: 156 IIRRMLQAGQPVTQAFNEVGNEMA---PPIGIEFKNTFNLLNYGYDMRLAIMQMAERTPT 212
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + A++ G ++ ++L + R + + K S +L+ +++
Sbjct: 213 VSMLAFSSAVLLQKETGGNLSENLEKVGKVLRQRFKLTRKIKTISAESRLSAWILVLSPF 272
Query: 309 VLIL--VIIGPAILSII 323
VL + + I P + +
Sbjct: 273 VLFVGLMFINPEYVKPL 289
>gi|317403490|gb|EFV83996.1| flp pilus assembly protein TadC [Achromobacter xylosoxidans C54]
Length = 256
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/250 (17%), Positives = 94/250 (37%), Gaps = 1/250 (0%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
S + + L+ + AG+ + + L + + L+
Sbjct: 3 DSFGKRLSEGRFAEALLAGEDRKLVDLAGYENPGTA-RLRFIVARFTLALLLPAAAVALD 61
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + A +G+ P ++ V +R+ P +DLL + G
Sbjct: 62 LGRGIGGSSLGLFVAAFFGFAIGYMLPKWFVRRRVSRRRRQAANELPLLIDLLRLLQGVG 121
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+SIDQ+L+ + ++ L+ E+ L R+ + D + +
Sbjct: 122 LSIDQSLQVLIKEFAQVLPVLAYELRLASELYVRGRTREQSLARLAAGFDNDDLSAICRL 181
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ Q D++G ++ + L R +R +E ++K K+T MI+ LP L++V G
Sbjct: 182 IAQVDQHGGAVQEPLNRFGERLREKRRLELKEKVGKTTVKMTAVMIVTLLPALLIVTGGA 241
Query: 318 AILSIIDTMK 327
++++ +
Sbjct: 242 GFVAVLRGLS 251
>gi|116623252|ref|YP_825408.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116226414|gb|ABJ85123.1| type II secretion system protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 321
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/301 (13%), Positives = 103/301 (34%), Gaps = 22/301 (7%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + V+ +++ + +G LE+R ++AV R R +
Sbjct: 1 MPVLFLVAAATVVLTYRLLWMG---LERRDAALAVRRLSARPAGREDAGRGRP---RLIE 54
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ R + L+ + + + + L A ++ LL + + + + +
Sbjct: 55 GAGEARGVLTSRLLEGLRLRDAAAHLLETAAL--KWGPAGLLQRSVAMFLGGFVAATVAT 112
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L +G P ++ + R ++ + +PD L+ + +
Sbjct: 113 ANQAPLAALAAGAVLGCG----------PLWYVRRKARMRVAAFEDQFPDCLEFVSRSMR 162
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G + A+ + PL+ E+ E + ++ R V+
Sbjct: 163 AGHAFSVAIEMAHREFSD---PLAGELRRAFEEQNLGQPLEIVLRKLSQRVPSMDVQFFV 219
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A++ R G ++ + L L R + A +A S ++ I+ +P + V++
Sbjct: 220 SAVLLQKRTGGNLAELLDKLAQLMRERFKLRARIRAVSAQGLMSGR-ILSAIPAGVAVMM 278
Query: 316 G 316
Sbjct: 279 F 279
>gi|197118216|ref|YP_002138643.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197087576|gb|ACH38847.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 316
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/314 (12%), Positives = 106/314 (33%), Gaps = 33/314 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + V++F + + R + + R LRK + + + + S +
Sbjct: 3 ATLLLIFVAVFLGTFPLFSLFT-------RARHSYLLRHRLRKMEGGATRGTAESEHVLL 55
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + +L L A + + + + + +L
Sbjct: 56 PEPTTAERVLARLPLAAFFK-------------------RQVALSGVNISTLGFLLFTGS 96
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
I ++ + ++ V +L P +++ +KR+ PDA+ ++ +
Sbjct: 97 ISALGFIVLFAWKENVFLALLAAMALGAFPFAYLNYHRKKRRRLFAEQLPDAMVMMARSL 156
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S+ A+ + ++ P+ L + + + R +
Sbjct: 157 RAGHSLAAAVELIGLELPE---PIGGLFKLAYEQQKLGVRIADSLISLRERVESQDFNFF 213
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI--- 311
+ G ++ + L L RS + + + + +++ ++ LPV++
Sbjct: 214 LTVTRINSESGGNLSEILDKLAETLRSRLQIRRQVEVITAEGRISG-YVLVALPVVMFAG 272
Query: 312 LVIIGPAILSIIDT 325
L ++ P L + T
Sbjct: 273 LYLLRPGYLDVFFT 286
>gi|258627497|ref|ZP_05722278.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|262165915|ref|ZP_06033652.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
gi|262171239|ref|ZP_06038917.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|258580303|gb|EEW05271.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|261892315|gb|EEY38301.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|262025631|gb|EEY44299.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
Length = 321
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 52/317 (16%), Positives = 120/317 (37%), Gaps = 30/317 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D I ++ + A+++P+ GS K + E ++ Q+ SL ++
Sbjct: 1 MDDITYFF-ILLFFAVVFISQALILPAAGSKAKHKELAQRLKETQMNLDQEARSLLQEHY 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L +D +L V ++ + +G ++SL L V ++ + +
Sbjct: 60 LKSLSPQDR----------SLVKFAVFASLKKSIELSGL--DWSLTQTLTVCSIISVSIM 107
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + V+ G V + ++ + R S + PDALD
Sbjct: 108 STLALLGQAW------------FLVLAGGVVVWFVLQFFLQKRIADRLSRFEEQLPDALD 155
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + QA V +++ P+ E T L++ + ++A RT
Sbjct: 156 IIRRMLQAGQPVTQAFNEVGKEMA---APIGLEFKNTFNLLNYGYDMRLAIMQMAERTPT 212
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A++ G ++ ++L + R + + K S +L+ +++
Sbjct: 213 VSMLAFASAVMLQKETGGNLSENLEKVGKVLRQRFKLTRKIKTLSAESRLSAWILVLSPF 272
Query: 309 VLIL--VIIGPAILSII 323
VL + + I P ++ +
Sbjct: 273 VLFIGLMFINPDYVTPL 289
>gi|239929198|ref|ZP_04686151.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291437532|ref|ZP_06576922.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340427|gb|EFE67383.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 295
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 13/230 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L K+ AG +L+ R V + + ++++ +
Sbjct: 63 LRLMGPKQVAKYRRKIDLAGNPGGLTLDRYAARRAVYGALGGVGFLVFLLRGQLFVALLL 122
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
G V I + ++ R+ I+R PD LD+L + V +G+ QAL R
Sbjct: 123 LAF----------GAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDR 172
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA G P ++E+ +T+ ++ +R+ AF R + V AL Q + G
Sbjct: 173 VASKYEG---PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGA 229
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
I D+L L + R A +KAA PK T+ + F +P ++++
Sbjct: 230 PIVDTLVSLAKDMRRTDAQNARRKAARAVPKATMMITTFMVPATMILLGA 279
>gi|212635450|ref|YP_002311975.1| Tight adherence TadB-like transmembrane protein [Shewanella
piezotolerans WP3]
gi|212556934|gb|ACJ29388.1| Tight adherence TadB-like transmembrane protein, putative
[Shewanella piezotolerans WP3]
Length = 325
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 120/316 (37%), Gaps = 28/316 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ E+ +++ L A+ +P + A+ R+ L+ S
Sbjct: 1 MFSNEVIFLGLIFIAVIFLSQALFLPVYSPQRVNT-----ALVRKRLKSLSEDSENTTYE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S LR L + L + D + +L A + + + L + L+ I
Sbjct: 56 TSLLRKSRLAKLGTIGRYLESFQFIED--LSYRLELADY--KLLGHQYLFLALITATILA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +++ + A + + + + + KR I+ ++PDALD
Sbjct: 112 VGAWLYL------------AEIIAGMFVFGLVLFLFNFKLVRDTNKRMDKIEESFPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +++G S A++ V E++ G PL++E L A +++ + + A +F R
Sbjct: 160 VLRRALQAGYSFSDAVKLVTEEMEG---PLAKEFSLMFANINYSKDTKRALLSFIERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ ++++ L R + S +L+ I+ LP
Sbjct: 217 VSAMAFASAVMVQKETGGNLAENIQNLSRVIRLRFTFRRRVRTLSAEGRLSA-WILILLP 275
Query: 309 VL---ILVIIGPAILS 321
+ ++ I P +
Sbjct: 276 FVLFAVIYIQTPGYVG 291
>gi|167624198|ref|YP_001674492.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
gi|167354220|gb|ABZ76833.1| type II secretion system protein [Shewanella halifaxensis HAW-EB4]
Length = 325
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/316 (16%), Positives = 116/316 (36%), Gaps = 28/316 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ V++ L A+ +P + V + L + + S
Sbjct: 1 MFSNQVIFLGLVFVAVLFLSQALFLPVYSPQRANSAL--VRKRLKKLSEASGDITYETSL 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R + ++++ L EN+ +L A ++ L+ + +
Sbjct: 59 LRKSRLGKLGPIGRWLERFQL-----IENLSYRLELADYK--------LMGHQFIFLALF 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ + L E A + V + ++ KR I+ ++PDALD
Sbjct: 106 SASIVASVVWFYLGEQ------IAAGFMFVVTLFIFNFKLNRDTAKRMEKIEESFPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +++G S A++ V E++ G PL++E L A +++ + + A F R
Sbjct: 160 VLRRALQAGYSFSDAIKLVTEEMEG---PLAKEFSLMFANINYSKDTKRALLGFIERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R + S +L+ I+ LP
Sbjct: 217 VSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEGRLSA-WILILLP 275
Query: 309 VL---ILVIIGPAILS 321
+ ++ I P +
Sbjct: 276 FVLFAVIYIQTPGYVG 291
>gi|56697923|ref|YP_168294.1| TadC family type II/IV secretion system protein [Ruegeria pomeroyi
DSS-3]
gi|56679660|gb|AAV96326.1| type II/IV secretion system protein, TadC subfamily [Ruegeria
pomeroyi DSS-3]
Length = 322
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/302 (14%), Positives = 107/302 (35%), Gaps = 28/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V + L+ + + + G S+ + ++ +LR
Sbjct: 8 IIYGLIFVGVLVLVEGLYLVAFGKS------ISLNSRVNRRLEMLDKGTGREQVLEQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ +++ K+I + + K + A +L++ + L
Sbjct: 62 EMQQHMKS-------KSIPLYSLLAEKAQKA-------AIAFTPRQLIMIMFLLAGIAFV 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
E + + I I V +W++ +KR S I+ PD+++L++ +
Sbjct: 108 GLSIGTQTEVKLRAAISVAIGIAAV-----YLWVNQKAKKRLSLIEEQLPDSVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G + A++ VA++ P++ E + E ++ A + R M +R
Sbjct: 163 RVGHPLVSAIQIVAKESED---PIATEFGIIADEAAYGREVGEALKEMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ A+ + G ++ + L L R+ + KA + + + + F +L I
Sbjct: 220 SVAVTIQQQSGGNLAEVLAGLAKVIRARFRLFRRVKAITAEAQWSGKFLSAFPLGALLFI 279
Query: 315 IG 316
+
Sbjct: 280 LV 281
>gi|258405284|ref|YP_003198026.1| Type II secretion system F domain-containing protein
[Desulfohalobium retbaense DSM 5692]
gi|257797511|gb|ACV68448.1| Type II secretion system F domain protein [Desulfohalobium
retbaense DSM 5692]
Length = 323
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/316 (15%), Positives = 111/316 (35%), Gaps = 27/316 (8%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + + +I + + +L + + R + R++ ++ +D
Sbjct: 1 MNIYIIALIIFVVSIMILEMFLYALRTIKNPDRSQIRKKLRKVTYNPKLDDAPQDIERKI 60
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + + L+ I + + + L A P+ F I+
Sbjct: 61 VFSEIK------ILDAILRRISITDRLHRLLYQAN--------------AQYPVGFYIIL 100
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ +L F V + +G +G P ++ KR P+ LDLL
Sbjct: 101 SPLLGLALVMLLEFFGYAVYVSLPVGLLGALTPFFYLKRKKLKRMRKFMAQLPEGLDLLA 160
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+++G + ++ AE+ G PL E + + E++F A R +
Sbjct: 161 RSLKAGHAFTTGMKLAAEEFGD---PLGPEFDVALDEINFGVPVPDALRKMTYRVDCPDL 217
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
A+I G ++ + + + + R + KA + L++ ++ LP I
Sbjct: 218 NFFVVAVIMQRETGGNLAEIIESIATLIRERFKFFGKVKALAAEGVLSM-WVLIGLPFAI 276
Query: 312 LVI---IGPAILSIID 324
+ I + P ++++
Sbjct: 277 VGILTFMNPEYITLLF 292
>gi|83950070|ref|ZP_00958803.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
gi|83837969|gb|EAP77265.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius nubinhibens ISM]
Length = 322
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 107/300 (35%), Gaps = 28/300 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V + L+ + + G S+ + + ++ +LR
Sbjct: 8 IIYGLIFVGVLVLVEGIYLTVFGKS------ISLNSRVNRRLEMLDKNANREEVMEKLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
LR+ + I + + K + A +L++ ++ L +
Sbjct: 62 EMQLHLRS-------RRIPLYAILATKAQKA-------AIAFSPKQLIMLMVLLSMVAFV 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ P ++ I + + +WIS+ +KR + ++ PDA++L++ +
Sbjct: 108 GLTFGTATSLPVRILASIGIGVSAI-----FMWISSKAKKRTARLEEQLPDAIELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ VA ++ PL+ E + E ++ A ++ R M +R
Sbjct: 163 RVGHPFSAAISIVANEVSD---PLATEFGIIADEAAYGRELGEALKDMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L RS + KA + K + + F + ++ I
Sbjct: 220 AVAVTIQQQSGGNLAEILDGLSKVIRSRFKLFRRVKAITAEAKWSGNFLSGFPLMALIGI 279
>gi|260892928|ref|YP_003239025.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865069|gb|ACX52175.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 313
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/286 (17%), Positives = 108/286 (37%), Gaps = 27/286 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + S+F+ + +++ + R + ++ S + R R
Sbjct: 1 MVISFSLFASLLFLILAW---------KEQREELRRAIWQRLSESKGGGARVFSWRERLQ 51
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
L+ ++ +L + L + +L A +L + F
Sbjct: 52 GGLKALLEASSLTSRLRA-RLERELSQADLPLRGEE--------------FLLMQLVFFF 96
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L Y I +G P +++ +L ++R + + PDAL L+ + +G
Sbjct: 97 GGGWLGYAGIHSFLGAIAGAALGGLVPFLYLRHLRRQRLARFQSQLPDALSLMANTMRAG 156
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ QA+ V ++ P+S+E T+AEL + A E +R D + A A
Sbjct: 157 FGMLQAMDVVRREM---PPPISQEFGRTLAELGLGMGVEEALERLSHRVPSDDLDLAVTA 213
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+I + G ++ + L + + R ++ E +A + +++ +I
Sbjct: 214 VIIQRQVGGNLAEILDNIATTIRERVRLKGEIRALTAQGRISALII 259
>gi|85705156|ref|ZP_01036256.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
gi|85670478|gb|EAQ25339.1| type II/IV secretion system protein, TadC subfamily protein
[Roseovarius sp. 217]
Length = 322
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/300 (16%), Positives = 102/300 (34%), Gaps = 28/300 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V + L+ + + G S+ + S ++ +LR
Sbjct: 8 IIYALIFVGVLVLVEGIYLTVFGRS------ISLNNRVNRRLEMLDKSGNREEVMEKLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L+ A + + + ++ + L ++
Sbjct: 62 EMQQHLKA----------------RRLPLYAILSDKAQKAAIAFTPKQLILLMVALSVLA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G E +R A + IG G WIS KR + ++ PDA++L++ +
Sbjct: 106 FIGLSVGTETAAPVRAIASVGIGVGGIF---TWISMKASKRMALLEEQLPDAIELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ VA ++G PL+ E + E ++ + A + R M +R
Sbjct: 163 RVGHPFSSAIGIVATEVGD---PLATEFGIIADEAAYGRDMGEALKEMAERLDMQDLRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L R+ + KA + K + + F + ++ I
Sbjct: 220 AVAVTIQQQSGGNLAEILAGLAKVIRARFRLFRRVKAITAEAKWSGKFLSGFPIMALIGI 279
>gi|84496011|ref|ZP_00994865.1| putative integral membrane protein [Janibacter sp. HTCC2649]
gi|84382779|gb|EAP98660.1| putative integral membrane protein [Janibacter sp. HTCC2649]
Length = 302
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/273 (13%), Positives = 97/273 (35%), Gaps = 9/273 (3%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R+ L + ++ + + T ++ L + K+ ++
Sbjct: 34 RDALERLSPNHARRRTQTVGAATDSTQRLGLWGMKVLPASVWGRTPTRELAIL-----RK 88
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLE-YPFQLRVGAVILIGYVGFCAPSVWISN 170
++ +++ ++ L + + + PF + V A I F P + +
Sbjct: 89 PVSRFYGEKILFAMVGLAIPPLLTAVFTLGGANLPFVIPVVATIGFAAAMFFLPDYNVRD 148
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ ++ R+ +DL+ + +G QA+ A GG S
Sbjct: 149 DAKRARAEFSRSLGAYIDLVALERNNGAGPRQAMEAAAA--GGDSWVFRRLSEELARTRW 206
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A + + + + + S G + LR + R+ L + K
Sbjct: 207 SGLTPWEALRALGDELGLPELDDLADIMRLSGEEGAQVYAQLRARSAGMRTAMLNTEKAK 266
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
A +G ++++PM + + + + +++ PA+L ++
Sbjct: 267 ANEIGERMSIPMSLLGV-IFLAILVAPALLRVM 298
>gi|126729094|ref|ZP_01744908.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
gi|126710084|gb|EBA09136.1| type II/IV secretion system protein, TadC subfamily [Sagittula
stellata E-37]
Length = 321
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/307 (13%), Positives = 109/307 (35%), Gaps = 30/307 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V + + + + + G S++ + + +++ ++LR
Sbjct: 7 IIYGLIFVGVLVFVNGIYLVAFGKS------ISLSNKVNRRLEMLDRGDRREDVLAKLRK 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + +++ + + +K A +L++ + +
Sbjct: 61 EMDQHMES-------RSLPIYSLLADKANKA-------AIAFTPQQLMMIMAGASVVAFV 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
V+L +G +W+ +KR S I+ PDA++L++ +
Sbjct: 107 GLSIGTETGL-----AIRVVLSAGMGIGGVYMWVGTKAKKRLSMIEEQLPDAVELMVRSL 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ V+++I PL+ E + E ++ + A ++ R M +R
Sbjct: 162 RVGHPFTSAITIVSKEIKD---PLATEFGIIADESAYGRDIGEALKHMAERLDMQDLRFL 218
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF--LPVLIL 312
A+ + G ++ + L L R+ + KA + + + + F + ++ +
Sbjct: 219 AVAVAIQQQAGGNLAEILEGLAKVIRARFRLFRRVKAITAEAQWSGKFLSGFPVMALIFI 278
Query: 313 VIIGPAI 319
+ P
Sbjct: 279 QVAKPDY 285
>gi|76663417|emb|CAE47793.1| flp pilus assembling protein [Bdellovibrio bacteriovorus]
Length = 291
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 84/204 (41%), Gaps = 5/204 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I+ L++ + + I G+ P + + + +KR +
Sbjct: 61 TILILMMSFGLGALAFLIFWPNVLMGFVFGASITVAGWQLPLLLVRMIYEKRCARFVDQM 120
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
D L ++ +++G + ++++RV E +G P+S+E + ++ + + A +
Sbjct: 121 VDGLTIMANGIKAGSNPQESMKRVVEIMGN---PMSQEFAQVLYQMQVGDSFESALNDLG 177
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
NR V+ ++ G ++ ++ + +V R + +E + +A + + ++
Sbjct: 178 NRIPRPDVQMFVTSINILKETGGNLAETFQTIVLVVRERQKVEKKIQALTAQGLMQGIIV 237
Query: 304 IFFLPVLILV--IIGPAILSIIDT 325
+L++V II P + + +
Sbjct: 238 TLIPFILMVVFSIIDPTFIKPMFS 261
>gi|290957844|ref|YP_003489026.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260647370|emb|CBG70475.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 300
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L E ++ AG +LN R V +G++++
Sbjct: 68 LRLMGPRRVEAKRRRIDMAGNPGGLTLNRYAARRAVYGFFGAFMGLVFL----------T 117
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
R G A I V++R+ I R PD LD+L + V +G+ QAL R
Sbjct: 118 SDRPLFAAFTFAFGLLAADAAIWQAVRERKDVIDRTLPDFLDVLAVVVSAGLGFRQALDR 177
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VAE G P ++E+ +T+ ++ +R+ AF+ R + V AL Q + G+
Sbjct: 178 VAEKYEG---PWADELRITLRQMDMGVSRRQAFDELRRRNTSEQVAQFVSALQQGEELGS 234
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I ++L L ++ R A ++AA PK T+ ++F LP +++I L
Sbjct: 235 PIAETLIQLAADMRRTDAQNARRRAARTIPKATLVTLVFMLPATMILIATGMFLG 289
>gi|218663020|ref|ZP_03518950.1| putative tadB pilus assembly protein [Rhizobium etli IE4771]
Length = 317
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/311 (16%), Positives = 109/311 (35%), Gaps = 32/311 (10%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
T V + + A+V + +R ++V +L +
Sbjct: 2 TLTLVYAAIFTAALVAVEAIVRGYFKTS---ERHRAVNHRLSLLEVSEDHR--------- 49
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
K+ + +K+ + ++ +L S R +F I G
Sbjct: 50 ------KTYSDMLKERGVAGSWRQVAMMQRLLQ---FYAQSGIKFDARRFA---LFAIAG 97
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + L LR+ +L +G P+V++ +R + P+ALD+
Sbjct: 98 ALLTWLVVQFLVPSTLLRIPVFLL---IGLLIPAVFVWRARARRMKKFELKLPEALDVAN 154
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G + A+ V ++ P+ E L EL++ A N +R ++ +
Sbjct: 155 RSLAAGHPLPAAISLVGREMPD---PIGTEFGLLSDELTYGVTLDDALVNLADRVGVEDL 211
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPV 309
+L G ++ + L+ L R ++ A+ +A S ++T + FL
Sbjct: 212 DLLAISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEGRITAIFMSVYPFLLY 271
Query: 310 LILVIIGPAIL 320
++ + P
Sbjct: 272 AMIKALSPTYF 282
>gi|51245381|ref|YP_065265.1| TadB [Desulfotalea psychrophila LSv54]
gi|50876418|emb|CAG36258.1| related to TadB [Desulfotalea psychrophila LSv54]
Length = 317
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 91/195 (46%), Gaps = 4/195 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ +F++ +++ + + + + + V P +W+ + ++R+ + +
Sbjct: 85 ILAGVFILSSLLFSAVAFLVSFFLLKNHIAVSVTAAAVALLLPFLWLLSKRRQRRINFEE 144
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDALDL+ +++G SI +L+ V+E++ P++EE + + E++F + N
Sbjct: 145 HFPDALDLMGYAMKAGHSIMASLKMVSEEM---PAPINEEFAIVVEEINFGKSIDSTLRN 201
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F R +R ++I G ++ + L + + R + +A S KL+
Sbjct: 202 FAKRVDSTELRYFVTSVIVQRETGGNLVEILEKISAIIRKKFRFRERVRALSAEGKLSA- 260
Query: 302 MIIFFLPVLILVIIG 316
+I+ LP I + +
Sbjct: 261 IILVALPFCIALAVS 275
>gi|325264274|ref|ZP_08131005.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
gi|324030345|gb|EGB91629.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
Length = 410
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 7/193 (3%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ E I+ F ++ R+ + +P + + +
Sbjct: 217 IVWKYPAESRAAGLFVLGIVAAGAVFFLDRQKHKQVLADRKKQLAADYPQLISQFTLFLG 276
Query: 196 SGISIDQALRRVAEDI-----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+G+S+ +A ++AE+ EEM T+ E+ + +E F +R +
Sbjct: 277 AGMSVRRAWFKMAEEYEKRRDRKGPRIAYEEMSYTMHEIQGGVSEGECYERFGSRCGLPA 336
Query: 251 VRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R L Q+ R G + + LR ++ +R +A K G KL PM + L V
Sbjct: 337 YRRFGALLSQNLRKGGRGLNELLRKEAADAFEDRKKQARKLGEEAGTKLLGPMFL-MLAV 395
Query: 310 LILVIIGPAILSI 322
++++I+ PA SI
Sbjct: 396 VLIIIVVPAFFSI 408
>gi|320095978|ref|ZP_08027592.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977085|gb|EFW08814.1| hypothetical protein HMPREF9005_2204 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 178
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 3/173 (1%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V +L VG A ++ RQ ++ A PDA +LL + V +G S+ AL RVA
Sbjct: 5 VVVALLGCVVGMSAWDRLLTARADSRQRRVEAAVPDASELLALAVGAGESVPAALDRVAS 64
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
L +E+ +A++ A + R + Q L + G+ +
Sbjct: 65 L---SHSDLGDELARAVADIRLGAPSVRALTDLAARNDSPALSRLCQTLSTAIGRGSPLA 121
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L + R ++ + P++ LPV +L + P ++++
Sbjct: 122 AVLHDQARDIREASRQRLMEEGGKREIAMLFPVVFLILPVTVLFALYPGLMAL 174
>gi|284048523|ref|YP_003398862.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
gi|283952744|gb|ADB47547.1| Type II secretion system F domain protein [Acidaminococcus
fermentans DSM 20731]
Length = 321
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 94/285 (32%), Gaps = 21/285 (7%)
Query: 43 KRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKL 102
+R + V+ + Q +++K LR R + ++ + + +
Sbjct: 26 QRRREVSQRIQQYAGYQPAAVRKTPFWEILRNRFHELFAERNRR--PGRPWNRKKLDLMM 83
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG L+ + V I + ++++ + +L G +
Sbjct: 84 IQAGLP--------LLGKEYVAIAGGLAVLVFLVTAVAGR------SLVTGLLGGILTLF 129
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
+++ + +R+ + +R D L L+ + +G S Q + ++ ++ P+S E
Sbjct: 130 GAVIFLQRRISRRKEAFERQLADCLTLVSNSLRAGFSFLQTMEIISREMQ---PPMSTEF 186
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ S + A + R + A++ + G ++ L +
Sbjct: 187 ANVMRNTSLGRTMEDALQEMDQRVGNEDFSLVITAVLIQQQVGGNLATILDTIRETISER 246
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPV--LILVIIGPAILSIIDT 325
+ E + K + ++ L + P L + T
Sbjct: 247 IRLRREVGTLTAQGKFSGLVLTCIPVALGLFFAVTSPEYLKPLLT 291
>gi|254381954|ref|ZP_04997317.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340862|gb|EDX21828.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 297
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 13/229 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L ++ AG S +++ R V + + +
Sbjct: 64 LRLMGPDRVARKRRQIDTAGNPSGLTIDRYAARRAVYAFLGAVGAFAMLLNG-------- 115
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
++ +L+ G + + ++ R+ I+R PD LD+L + V +G+ AL R
Sbjct: 116 --QLVLALLMVAFGLFWIEFGLWSAIRIRRDHIERTLPDFLDVLAVVVSAGLGFRPALER 173
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA+ G P S+E+ +T+ +++ +R+ AF+ R + V AL Q + G+
Sbjct: 174 VADKYEG---PWSDEIRITLQQMTMGVSRRQAFDELRRRNDSEQVAQFVTALQQGEELGS 230
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
I ++L L + R A ++AA PK T + F LP +++++
Sbjct: 231 PIVETLIALAEDMRRTDAQNARRRAARAVPKATFAVTTFMLPGTLILLV 279
>gi|302536567|ref|ZP_07288909.1| integral membrane protein [Streptomyces sp. C]
gi|302445462|gb|EFL17278.1| integral membrane protein [Streptomyces sp. C]
Length = 292
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/300 (18%), Positives = 128/300 (42%), Gaps = 26/300 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A+ A+S+F +++ V + V + ++ ++ + + + S +
Sbjct: 1 MALAAALSVFGILHGVRLY----------RADVKLPTDLALALEVGATRTTAVGSVVDRL 50
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ ++ + K + ++ AG + +++ R V + + + +
Sbjct: 51 GIRWAPLVLRLMGPKQVARK---RRQIDMAGNPAGLTIDRYAARRAVYGFLGGLGALAML 107
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
++ +L+ G + + ++ R+ +I+R PD LD+L + V
Sbjct: 108 MNG----------KLVPALLMIAFGLFWIEAGLWSAIRIRRDNIERTLPDFLDVLAVVVS 157
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ QAL RVA G P ++E+ +T+ ++ +R+ AF+ R + V
Sbjct: 158 AGLGFRQALERVAGKYEG---PWADEIRITLQQMDMGVSRRQAFDELRRRNDSEQVAQFV 214
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL Q + G+ I ++L + + R A ++AA PK T + +F LP +++++
Sbjct: 215 TALQQGEELGSPIVETLIAIAEDMRRTDAQNARRRAARAVPKATFAVTMFMLPGTLILLV 274
>gi|293391328|ref|ZP_06635662.1| Flp pilus assembly protein TadB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|32452627|gb|AAP43989.1| TadB [Aggregatibacter actinomycetemcomitans]
gi|290951862|gb|EFE01981.1| Flp pilus assembly protein TadB [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 295
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 6/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ F + + + LI VGF + K + +P+ +
Sbjct: 71 IVISCFVFFAFFVINVAYIHIDRLVFCLIFLVGFVLFIWKLGQYRNK--KTFNAMFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L S + + QAL R +D+ GQ L +E LS + F++ Y+R
Sbjct: 129 QILNAAATSSVGLLQALERCGKDLTGQ---LGQEFKSIHRRLSIGEDPATVFDDSYDRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G I + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFITIIRNNLNKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACF- 244
Query: 308 PVLILVII 315
PV +
Sbjct: 245 PVGFFFFM 252
>gi|302542847|ref|ZP_07295189.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460465|gb|EFL23558.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 297
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 13/235 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L + ++ AG +++ R V ++ ++ + LL
Sbjct: 65 LRLMGEKRVARVRRRIDLAGHPGGLTVDRYAARRAVYGMLGFGGALVMLMRGQLLLAVLL 124
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ G V I V++R+ +I R PD LD+L + V +G+ QAL R
Sbjct: 125 VV----------FGLFWIEVGIWAAVRERKDAIDRTLPDFLDVLAVVVSAGLGFRQALDR 174
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V+E G P ++E+ +T+ ++ +R+ AFE R + V AL Q + G
Sbjct: 175 VSEKYEG---PWADELRITLRQMDMGVSRRQAFEELRKRNDSEQVAQFVTALQQGEELGA 231
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
I ++L + ++ R A ++AA PK T+ + F +P +++++ +
Sbjct: 232 PIVETLIAIANDMRRTDAQNARRRAARAVPKATMVITTFMVPGTMVLLVAGFFIG 286
>gi|256785971|ref|ZP_05524402.1| integral membrane protein [Streptomyces lividans TK24]
gi|289769863|ref|ZP_06529241.1| integral membrane protein [Streptomyces lividans TK24]
gi|289700062|gb|EFD67491.1| integral membrane protein [Streptomyces lividans TK24]
Length = 306
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 103/315 (32%), Gaps = 10/315 (3%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L + + IYA+V + S ++ VA + + + + +
Sbjct: 1 MNLTMPVLVGAVTGLGIYALVRALMPSRRSP--IQQVARIDAMRARGAAYESSRAAKDTS 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ V +L L+ ++ L + S L + ++ + L G
Sbjct: 59 RLGSLRAQVGARVAELYLQQGWEQRSLRADLA----VLDRSWEKFLATKALLAVGGLFFG 114
Query: 132 -IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + + V +L + F P + + ++ ++R LDL+
Sbjct: 115 PFLFAIVWQLGFGDSPIIPVWLALLCAALFFFLPDLEVRRDAADKRRDLRRVIGAYLDLV 174
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G + +AL AE + L A + ++ A ++
Sbjct: 175 SMSLAGGRGLPEALMAAAE-VSDGWATHRIRNALADARI-TGISQWQALGQLGEDLGVEE 232
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+++ + +L G + +SL R L E E A + V +
Sbjct: 233 LKDLSASLALVADDGAKVRESLASRAETMRHRELSEIEGSAGEKSQSMLVAQ-LLLCAGF 291
Query: 311 ILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 292 LVFLIYPAAMRVFQV 306
>gi|302521144|ref|ZP_07273486.1| integral membrane protein [Streptomyces sp. SPB78]
gi|318062248|ref|ZP_07980969.1| integral membrane protein [Streptomyces sp. SA3_actG]
gi|318080604|ref|ZP_07987936.1| integral membrane protein [Streptomyces sp. SA3_actF]
gi|302430039|gb|EFL01855.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 312
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/319 (13%), Positives = 99/319 (31%), Gaps = 10/319 (3%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSL--GSGELEKRMKSVAVEREILRKQQITSLQKDS 67
++ + + +Y +V L L+ + A+ + + K
Sbjct: 1 MNSQWIGPVVAGAVVGLGMYVLVRALLPGARSPLQTVARVDALRARGAYEPPVHRGGKHE 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
SL + + ++ L + S L ++++ +
Sbjct: 61 EDDGRFATARASLGLRLAAFYRQQGWELRSLRADLA----VLDRSWERFLATKVLLGVAG 116
Query: 128 LILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L+ G ++ + + V +L G + F P + I Q ++ ++R
Sbjct: 117 LVFGPAVFAIVAVLGIGRSPLIPVWLALLCGILFFFLPDLEIRRDAQDKRRDLRRVIGAY 176
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDL+ + + G + +AL AE G + + A
Sbjct: 177 LDLVAMSLAGGRGLPEALLAAAEVSDGWAS--RRIRDALQDARITGHTQWYALGRLGEEL 234
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ ++ + +L G + +SL R L E E A + + +
Sbjct: 235 GIEELKELSSSLALVADDGAKVRESLASRAETMRHRELAEIEGSAGEKSQSMLIAQ-LLL 293
Query: 307 LPVLILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 294 CAGFLVFLIFPAAMRVFQM 312
>gi|212224827|ref|YP_002308063.1| hypothetical protein TON_1676 [Thermococcus onnurineus NA1]
gi|212009784|gb|ACJ17166.1| conserved hypothetical membrane protein [Thermococcus onnurineus
NA1]
Length = 355
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/253 (16%), Positives = 97/253 (38%), Gaps = 10/253 (3%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+K R ++++ + + + + L A + L++ +
Sbjct: 70 RKQEIQKPFSERLAETMLRYFRGPIESLTGFFKGLDQDLYRASILMPKDKYVALMLSV-- 127
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I I+ F + L+ P + IL GF + + ++R ++RA
Sbjct: 128 ----AIFSGIFGFLFSYLIYMPIDTSILIGILGFIGGFIYMRQYPKMMWKRRVVEVERAM 183
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P AL + + +G+ I +A+ VA +SEE L + ++ + + A F
Sbjct: 184 PYALRHMASLLSAGVGISEAILSVAR---ADYGVISEEFELILRDMRTGSSFEEALTKFD 240
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + V + ++++ ++G ++ + L + + E M+ + + + M
Sbjct: 241 EKMSSENVSRVVKQILRAVKFGGNLSEVLYKMAEDFAFEYRMKLIEYVQRVNGIAFIYMF 300
Query: 304 IFF-LPVLILVII 315
I +P + +V I
Sbjct: 301 ITIVMPTMFVVGI 313
>gi|254441335|ref|ZP_05054828.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
gi|198251413|gb|EDY75728.1| Bacterial type II secretion system protein F domain [Octadecabacter
antarcticus 307]
Length = 322
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/302 (16%), Positives = 111/302 (36%), Gaps = 29/302 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V+ L+ + + + G + + + ++ +LR
Sbjct: 8 IIYALIFVACIVLVNGIYLVAFGKS------INFNNKVNRRLEMLKKGGNREEVLDQLRK 61
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ + N K++ + + +K + A S + ++ ++ +
Sbjct: 62 EMTQHM-------NSKSVPLYSLLASKAQKANIAFTPS---------QLMMLMVVTSGVA 105
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G E +R + +G G +W+ +KR S I+ PDA++L++ +
Sbjct: 106 FMGLTIGTETSLPIRAAVAVAMGIGGVF---MWVDGKAKKRISMIEEQLPDAVELMVRSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G A+ VA+++ PL EM + E ++ + + + +R M +R
Sbjct: 163 RVGHPFSSAVAIVAKEVPD---PLGTEMGVISDEAAYGRDMGESLKQMADRMDMQDMRFL 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ G ++ + L L R+ + KA + K + M + P+ LV+
Sbjct: 220 AVAVTIQATAGGNLAEILHGLSQVIRARFKLFRRVKAITAEAKWSG-MFLSVFPLGALVM 278
Query: 315 IG 316
I
Sbjct: 279 IN 280
>gi|89053484|ref|YP_508935.1| type II secretion system protein [Jannaschia sp. CCS1]
gi|88863033|gb|ABD53910.1| type II secretion system protein [Jannaschia sp. CCS1]
Length = 322
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 96/303 (31%), Gaps = 31/303 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I V + L+ V + G L R+ E ++ + + +
Sbjct: 8 LIYIGIFVGVIMLVNGVYLAVFGKSISLNARVNRRLTMLEQGTSREDVLDKLRKEMDQHK 67
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ K + L AG +
Sbjct: 68 GGIKLPFYTMIADKAQKGNIAFTPPQLMLVMAG-----------------------AAVA 104
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L + V + +G G W+S +KR S ++ PDA++L++
Sbjct: 105 AFVLLQVLTTASLPISVLCAVAMGVGGVYL---WVSRTAKKRLSLLEEQLPDAVELMVRS 161
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ G ++ V+ ++ P++ E+ + E ++ + + +R + +R
Sbjct: 162 LRVGHPFVASINTVSREMSD---PIASELGVIADEAAYGRDVAESIRAMADRLDIQDLRF 218
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ G ++ + L L R+ + + + + + + + P+L LV
Sbjct: 219 LAVAVGIQQTSGGNLAEILAGLADVMRARFKLFRKVRVITAEARGSG-NFLSVFPILALV 277
Query: 314 IIG 316
I
Sbjct: 278 GIN 280
>gi|325518827|gb|EGC98402.1| type II secretion system protein [Burkholderia sp. TJI49]
Length = 187
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 107/176 (60%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++++ +G P+V ++ + RQ +I +PDALDLL +CVE+G+ +D AL +V+++
Sbjct: 3 VILVVLAAIGNYVPNVMLARRIAARQRAIFEDFPDALDLLTVCVEAGLGLDAALMKVSDE 62
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ +S ++ E+ L + E+ ++ A N RT ++ V + LIQ+DR+GTS+ +
Sbjct: 63 LHFRSAVVASELALLLLEMRSGFTKETALRNLALRTGVEDVESFCTMLIQADRFGTSVAE 122
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
SLRVL R+ R M AE++AA + KL P+I P L+ V++GPA++ + +
Sbjct: 123 SLRVLSDMLRTRRRMRAEERAAKIALKLLFPLIFCVFPALMGVLLGPALIHVYRVL 178
>gi|167463710|ref|ZP_02328799.1| Flp pilus assembly protein TadB-like protein [Paenibacillus larvae
subsp. larvae BRL-230010]
gi|322384398|ref|ZP_08058084.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150756|gb|EFX44216.1| hypothetical protein PL1_0930 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 304
Score = 91.0 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 73/202 (36%), Gaps = 8/202 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
IL I+ ++ + F ++ L G P L+++R+ + + + AL
Sbjct: 73 ILTILVAGTILGIVGFIFYNQIIMAFLFAAGGCLTPKYRNITLMRRRKEEMNQQFKQALQ 132
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +G S++ A R +D+ + +E + + L + F
Sbjct: 133 CLSTSLSAGKSVENAFRDTLQDLELLYPDPSAMIVQEFGVMVRRLDNGEPIEACILGFAE 192
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ + N I R G ++ + +R + + E K +++
Sbjct: 193 RAGLEDITNFADVFITCKRTGGNLIEVIRRTSHLISEKLQIVQEISVMVAQKKFESKIML 252
Query: 305 FFLPVLILVII---GPAILSII 323
PV I+ I+ P + +
Sbjct: 253 TA-PVAIIGILCFSSPDYMKPL 273
>gi|229821270|ref|YP_002882796.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
gi|229567183|gb|ACQ81034.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
Length = 315
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 9/285 (3%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
+ R+ R S SA RL + +++L +
Sbjct: 32 LAARRVRFADRVGPYVRARRATSTLLPASDGAASALERLIAPVVGDVGKLLERLGSSSSS 91
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
I +L AG R+ S++ V ++ L LG+ V
Sbjct: 92 ----IRRRLALAGGRT--SVDAFRVEQVAWGAAGLALGLALAIVIGVTRGVSPVPLAVLV 145
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
L G ++ V+ R++ I +P +LL + V +G + AL RVA
Sbjct: 146 ALAAVAGMLLRDRRLTRQVRAREARIMAEFPTVAELLALAVSAGEAPVAALDRVAR---S 202
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
LS E+ T+A++ A E RT + V + + G+ + D LR
Sbjct: 203 TQGELSAELGRTLADVRAGATMAGALEGLARRTDLPAVSRFADGVAVAIERGSPLADVLR 262
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
++ R E + + +P++ LPV ++ + P
Sbjct: 263 AQAADARDAGKRELMESGGRKEVAMMIPVVFLVLPVTVVFALFPG 307
>gi|332798624|ref|YP_004460123.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332696359|gb|AEE90816.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 309
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L I++ +L Y V + + +G P +++ + K+Q ++ DAL
Sbjct: 83 FVLTWIFLAVVPAVLLYTITESVIRSMALVLIGAIIPPLYLKMSINKKQIQFEKQLGDAL 142
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L + +G S+ QA+ +A+D+ PL E EL + + +R +
Sbjct: 143 QILANGLRAGFSLTQAIESLAKDMPD---PLGSEFRTASRELLLGMDIETVLSKIADRMK 199
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ +R T A++ + G ++ + L + R ++ + + +++ ++
Sbjct: 200 SEDMRLLTAAVVIQLQVGGNLAEILDNISQTIRDRLAIKRSVRTLTAQGRISGQIV 255
>gi|330862289|emb|CBX72450.1| hypothetical protein YEW_HH31820 [Yersinia enterocolitica W22703]
Length = 203
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 1/201 (0%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ I IL I I L + + V +I + P V + N+V KR S+ R+
Sbjct: 1 MIIAVTILIITAILATFDLFSINLKNILVMVTIILIMTLYFPKVIVKNIVAKRTKSLLRS 60
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P +D+ CV+SG++ID +L A+ + LS ML + A + F
Sbjct: 61 LPFFIDITAACVQSGMTIDNSLSYSAKKFELINADLSLIMLKVTRRAEIN-GLENAIKEF 119
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +R AL S +G ++ + L L + R +L+ E+K + L KLT+P+
Sbjct: 120 NQSSTELEIRMFCSALQYSISFGATVYEQLIKLSKDMREMQLLVTEEKISKLTAKLTIPL 179
Query: 303 IIFFLPVLILVIIGPAILSII 323
+F L I+++I P++L +I
Sbjct: 180 FLFILIPFIVLVISPSVLELI 200
>gi|227494922|ref|ZP_03925238.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
gi|226831374|gb|EEH63757.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
Length = 293
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/259 (15%), Positives = 97/259 (37%), Gaps = 10/259 (3%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
K++A S + L L +E++ +L G + ++ ++++
Sbjct: 43 PKETAPSSRISHSLDFLTPLWNALG----STNESVRARLETLG--NSQEVSGFRLIQVAT 96
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+L + I Q + I + ++ V +
Sbjct: 97 ATFGALLIGLAIIFGKAGNLTVLQWLLITSISFTLITVGW-DKLLTYRVNTFSKKLNSQV 155
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
DA +LL + + +G S+ AL RVA+ G ++ ++ + +++ A +
Sbjct: 156 ADAAELLALVISAGESVPGALNRVAKVSG---PQMASQLESALTQIAQGTAVSKALKTLA 212
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
N+T ++ L+ G+S+ + LR + R E L + + +P++
Sbjct: 213 NKTPSVQLQRLLNTLVSGMERGSSLSEILRHQAKDLREESLRNLLESGGRKEIAMLIPVV 272
Query: 304 IFFLPVLILVIIGPAILSI 322
LPV ++ + P ++++
Sbjct: 273 FLILPVTVIFALYPGLIAL 291
>gi|296133932|ref|YP_003641179.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296032510|gb|ADG83278.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 278
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 77/198 (38%), Gaps = 5/198 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I ++ F + + GF P + +L+ KR++ ++ + DAL L
Sbjct: 50 IIAAIVLFVIGLIFFSNLIIAFIFSLGGFFYPKYKVQDLITKRKAELQLQFKDALYSLTS 109
Query: 193 CVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ G S++ A + D+ + +E ++ + A +F R+ +
Sbjct: 110 SLGVGRSLESAFKTALNDLRVLYPDENTYIIKEFGYICRKIELNEPVETALLDFAERSGL 169
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ ++N + ++ R G ++ ++ + + + E + K I+ +P
Sbjct: 170 EDIKNFAEVMVICKRTGGNLVQVVKNTSAILSDKIEISQEIELLLTKQK-YEQKILNIMP 228
Query: 309 VLILVIIGPAILSIIDTM 326
++ + ++ +D++
Sbjct: 229 IVFIGLVKFGGSGYMDSL 246
>gi|21222913|ref|NP_628692.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|7242745|emb|CAB77319.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 302
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/311 (14%), Positives = 102/311 (32%), Gaps = 10/311 (3%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + IYA+V + S ++ VA + + + + +
Sbjct: 1 MPVLVGAVTGLGIYALVRALMPSRRSP--IQQVARIDAMRARGAAYESSRAAKDTSRLGS 58
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIW 134
+ V +L L+ ++ L + S L + ++ + L G ++
Sbjct: 59 LRAQVGARVAELYLQQGWEQRSLRADLA----VLDRSWEKFLATKALLAVGGLFFGPFLF 114
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + V +L + F P + + ++ ++R LDL+ + +
Sbjct: 115 AIVWQLGFGDSPIIPVWLALLCAALFFFLPDLEVRRDAADKRRDLRRVIGAYLDLVSMSL 174
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G + +AL AE + L A + ++ A ++ +++
Sbjct: 175 AGGRGLPEALMAAAE-VSDGWATHRIRNALADARI-TGISQWQALGQLGEDLGVEELKDL 232
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ +L G + +SL R L E E A + V + ++ +
Sbjct: 233 SASLALVADDGAKVRESLASRAETMRHRELSEIEGSAGEKSQSMLVAQ-LLLCAGFLVFL 291
Query: 315 IGPAILSIIDT 325
I PA + +
Sbjct: 292 IYPAAMRVFQV 302
>gi|325108940|ref|YP_004270008.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324969208|gb|ADY59986.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 323
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/215 (16%), Positives = 79/215 (36%), Gaps = 5/215 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ I L + G +L Q + G P +W+S
Sbjct: 82 PRFFEQADSPIGIELFALISLGCAGIGVVLGIIAQAPPPMYPVCGLCTAALPFMWLSFRR 141
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R S PDAL+L+ + SG S+ L+ V +++ P+S E + E +
Sbjct: 142 KRRFSRFASQLPDALELVARALRSGHSLASGLQVVVQEMPD---PISREFGMAYEEQNLG 198
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A +N ++R + A+ + G + + L + R + + +A
Sbjct: 199 VPIDQALKNVFHRVPNLDFKFFATAVAIQRQSGGDLAEILDKIGHIIRERFRIMGQVQAL 258
Query: 293 SLGPKLTVP--MIIFFLPVLILVIIGPAILSIIDT 325
+ +++ M + + ++ + P + ++ T
Sbjct: 259 TGEGRISGIVLMALPIVLFFVMYYLNPEYMMLLFT 293
>gi|323529409|ref|YP_004231561.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386411|gb|ADX58501.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 327
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 26/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ A AI +++ I + R + ++ +
Sbjct: 1 MNPIFYAFAILLFIAVVLGIEGLYQWWNSHHGPAAR-----RLDQRIQALSAGAHASSER 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L+ R + + + + + +G L V +
Sbjct: 56 LSILKERMLSNSAPLHALM--MRVPRIHLLDRFIVQSGL------------SLTVGRLAT 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + P QL L+ + F P++ + KR ++R P+A D
Sbjct: 102 HSVVALVVVLLAASFAPVQLPTLITALVAFAAFAFPTLRMLRARSKRLRLLERQLPEAAD 161
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + +G S A+ + + P E + E+++ A N R +
Sbjct: 162 MISRALRAGHSFSSAIGMLGNEFAE---PTGGEFRIVFDEINYGVTLNEALLNLATRVPV 218
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A++ G ++ + L + S R + + + S +L+ II LP
Sbjct: 219 RDLRFFVIAVLIQRETGGNLAEILDGIASLVRERLRLFDQVRVLSAEGRLSA-WIIGLLP 277
Query: 309 VLILV---IIGPAILSII 323
++ P+ LS++
Sbjct: 278 FAAAGGMNLLNPSFLSVL 295
>gi|302553855|ref|ZP_07306197.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471473|gb|EFL34566.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 295
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/225 (24%), Positives = 92/225 (40%), Gaps = 13/225 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L K+ AG +++ R V + + ++++ L+
Sbjct: 63 LRLMGPKQVAKYRRKIDLAGNPGGLTIDRYAARRAVYGFLGAVGFLVFLMRGQLLVALLL 122
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
G V I + ++ R+ I+R PD LD+L + V +G+ QAL R
Sbjct: 123 LA----------FGAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDR 172
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA G P ++E+ +T+ ++ +R+ AF R + V AL Q + G
Sbjct: 173 VASRYEG---PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGA 229
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
I D+L L + R A +KAA PK T+ + F +P +
Sbjct: 230 PIVDTLVSLAKDMRRTDAQNARRKAARAVPKATMMITTFMVPATM 274
>gi|111220778|ref|YP_711572.1| hypothetical protein FRAAL1321 [Frankia alni ACN14a]
gi|111148310|emb|CAJ59982.1| putative membrane protein [Frankia alni ACN14a]
Length = 316
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 7/297 (2%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL-RTRDSKSLRNFVK 85
+I P +L R+ + + + S + L + V
Sbjct: 19 VIVVYRSPRARRIQLADRIDPYLRDTPSPSRLLADRPRASSRPGLAAVEALVRPLLSDVA 78
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+ + + +L AG R+ S+ V +++ + ++G + L P
Sbjct: 79 GRLDRFLGGRAALQRRLTQAGGRT--SIEEFRVQQVICAVSGALVGAFLLALRALLGVGP 136
Query: 146 FQLRVGAVILIGYVGFCAPS-VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L A+++ G G W++ + +R+ + +P +LL + V +G + A+
Sbjct: 137 PALVSVALVVAGAAGGVVGREYWLTRAIGEREDRMLLEFPTVAELLALAVTAG---ESAI 193
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ L E+ L +A+ A E RT + + + +
Sbjct: 194 GALERVSRLTHGELGRELRLALADARAGATLVQALEGIAARTALAPLTRFVDGMAVAIER 253
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
GT + D LR + R + + + +P++ LP ++ PA++S
Sbjct: 254 GTPLADILRAQAMDVREAGKRQLLEAGGRKEIAMMIPVVFLVLPTTVIFAFYPALVS 310
>gi|257790324|ref|YP_003180930.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830281|ref|ZP_08163738.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474221|gb|ACV54541.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487748|gb|EGC90186.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 313
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 63/293 (21%), Positives = 113/293 (38%), Gaps = 12/293 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + + ++ + R VA + ++ R T
Sbjct: 10 VCAMLVLGAIGGLAAYEAFVRYAAPARRDVVAP--SSASASKDGHRAGGASRRRRATEAF 67
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ F+ K E+ ++L AG E +R+V +
Sbjct: 68 GAFAAFLDKRVPLTRADVESSRDRLSRAGV--ELEPETWRSIRVVSALG----CAGLAGV 121
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + GA G+ APS +S + R+ +I+ A PDA++LL I + +G
Sbjct: 122 AAAGMGFEPPAFAGAAACCAACGWMAPSWALSRRERNRRRAIELALPDAMELLGIAIAAG 181
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQ 256
I+Q R VAE + G PL+ E L E++ +R+ A E+ R + V T
Sbjct: 182 SPIEQCFREVAESMDG---PLAREFSLVDREVNLLGRSREEALEHLGQRCRSQDVSAFTA 238
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L+Q+ G+S+ + L V + R EA ++ + KL + + + FLP
Sbjct: 239 QLMQAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLDIVLSLCFLPP 291
>gi|103488239|ref|YP_617800.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
gi|98978316|gb|ABF54467.1| type II secretion system protein [Sphingopyxis alaskensis RB2256]
Length = 333
Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 106/267 (39%), Gaps = 12/267 (4%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
+ +++ ++ + + KSL ++ + A ++ L AA
Sbjct: 35 KSRAVNRRLRLIESGVDREAVTSLLRKSLPRRLEGVPPWAASTLQSFRRLLNAANIGMGE 94
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWIS 169
+ L + ++ + + I L +P L V +++ V F P + I+
Sbjct: 95 ------LQLLGLMLVGAVTVMFIILVAAGLTGFPITLGVVQLGLVIGIVVAFLLPWMVIT 148
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
L +R+ +++ +P ALD+ + + SG I AL+ + ++ P+ E + E+
Sbjct: 149 RLADRRRRRMEQQFPIALDIFVRGLRSGHPIPAALQLLTVEMED---PIGTEFGIVTDEI 205
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+F + + A R + + ++ G ++ + L L R M +
Sbjct: 206 AFGLDLREALARMAERWGLPDMHMFVVSVSVQMETGGNLAEILENLSKVIRDRASMFMKV 265
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIG 316
+A S ++T +I+ LP+L V +
Sbjct: 266 RALSSEGRMTA-VILTALPILAFVGLF 291
>gi|157961841|ref|YP_001501875.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
gi|157846841|gb|ABV87340.1| type II secretion system protein [Shewanella pealeana ATCC 700345]
Length = 325
Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/316 (17%), Positives = 119/316 (37%), Gaps = 28/316 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ ++ +++ L A+ +P A+ R+ L+K S
Sbjct: 1 MFSNQVIFLGLVFIAVLFLSQALFLPVYSPQRANS-----ALVRKRLKKLSEESGDITYE 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+S LR L + L + N+ +L A ++ L+ + +
Sbjct: 56 TSLLRKSRLGKLGPIGRWLEHFQFIE--NLSYRLELADYK--------LMGHQYIMLALF 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + G+ L E + A + +V + ++ KR I+ ++PDALD
Sbjct: 106 SASAVAVMGWLYLGE------LVAAAFMFFVMLFLFNFKLNRDTSKRMDKIEESFPDALD 159
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +++G S A++ V E++ G PL++E L A +++ + + A F R
Sbjct: 160 VLRRALQAGYSFSDAIKLVTEEMDG---PLAKEFSLMFANINYSKDTKRALLGFIERVPS 216
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ G ++ +++ L R + S +L+ I+ LP
Sbjct: 217 VSAMAFASAVMVQKETGGNLAENINNLARVIRLRFTFRRRVRTLSAEGRLSA-WILILLP 275
Query: 309 VL---ILVIIGPAILS 321
+ ++ I P +
Sbjct: 276 FVLFAVIYIQTPGYVG 291
>gi|313902405|ref|ZP_07835808.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
gi|313467336|gb|EFR62847.1| Type II secretion system F domain [Thermaerobacter subterraneus DSM
13965]
Length = 367
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 41/294 (13%), Positives = 97/294 (32%), Gaps = 22/294 (7%)
Query: 14 LAVAITTAVSIFSLIYAVVIPS--LGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ + + L++ ++ + +R+++V R ++ + +R
Sbjct: 38 FWLLLGVFLGSTYLVWGLLQAWDGWRGARVARRLEAV-HRHSRQRGLRLAPMLAMEDVAR 96
Query: 72 LRTRDSKSLRNFVKKLN--LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ V++ L+ + + KL A R + +
Sbjct: 97 TAREARSWRQQLVERAEARLRGTRWLDGVQRKLNRARLRWR--------------AVEFV 142
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LL R + G P +++ Q+R + PDAL L
Sbjct: 143 ALQAGAGLAGGLLGLAMGGRWPLALAATVAGILLPDAYLARRYQQRLRAFDGQLPDALTL 202
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG S QA VA ++ P+++E + E + A N +R
Sbjct: 203 MANALKSGYSFLQAADVVAREM---PPPIADEFAWLVKETRVNIPLEDALANLLDRVPSA 259
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ A++ + G ++ L R ++ + + + +L+ ++
Sbjct: 260 DLDLVVTAVLIQKQVGGNLAGVLERTAETIRERVRLQGQIRTLTAQGRLSGWIV 313
>gi|317403410|gb|EFV83923.1| type II secretion system protein [Achromobacter xylosoxidans C54]
Length = 246
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 2/189 (1%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
A + + P W+ + R+ I+R P LD++ +CVE+G+
Sbjct: 60 PMPPAASGPAWAMAGGAVAFTAALLPFAWLRAQGEARRRGIERGLPFMLDMMTLCVEAGL 119
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
A G S PL + + +A++ R A + +R V AL
Sbjct: 120 GAHA--ALQAAAANGPSGPLRDALAGALAQVRAGVPRVAAIQAMADRCGSPLVHRWATAL 177
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+D G S+G LR + RSER M AE+ A K+ +P+I P LV+ P
Sbjct: 178 AHADALGISLGPLLRAQAAHCRSERHMRAERLAMQAPVKMLLPLIGCIFPCTFLVLAFPI 237
Query: 319 ILSIIDTMK 327
+ + +
Sbjct: 238 AVQLSRGLG 246
>gi|114764950|ref|ZP_01444123.1| type II/IV secretion system protein, TadC subfamily [Pelagibaca
bermudensis HTCC2601]
gi|114542662|gb|EAU45686.1| type II/IV secretion system protein, TadC subfamily [Roseovarius
sp. HTCC2601]
Length = 321
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 114/307 (37%), Gaps = 29/307 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ EL + V + L+ V + + G S+ + + ++
Sbjct: 1 MFSAELIIYGLIFVGVLVLVEGVYLVAFGKS------ISLNSKVNRRLEMLDKHSNREEV 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++LR + +++ L R++ + +L++ + +
Sbjct: 55 LAKLRKEMDQHMKSRGLPLYSLLAD--------------RAQKAALAFTPNQLILMMAGV 100
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + ++ + + +G V +W++ +KR + I+ PDA++
Sbjct: 101 SVFAFFGLTAGTEAGLGVRVMIAIGMGVGGV-----FMWVNGKAKKRLALIEEQLPDAVE 155
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++ + G A+ V+++I PL+ E + E ++ + + ++ R M
Sbjct: 156 LMVRSLRVGHPFSSAIAVVSKEIKD---PLATEFGVIADESTYGRDIGESLKHMAERLDM 212
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+R A+ + G ++ + L L R+ + KA + + + + P
Sbjct: 213 QDLRFLAVAVSIQQQSGGNLAEILEGLAKVIRARFRLFRRVKAITAEAQWSGK-FLSGFP 271
Query: 309 VLILVII 315
V +L++I
Sbjct: 272 VGVLLVI 278
>gi|254426916|ref|ZP_05040623.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
gi|196193085|gb|EDX88044.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
Length = 291
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 95/235 (40%), Gaps = 13/235 (5%)
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
E+I L+ G E S I L+ ++P++ +G ++
Sbjct: 68 ASDYEDIRLALKGMGKTREQSQVIYLLSCWLLPVLVAAIGFLFFGALG------------ 115
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+L+ GF P I + + + + + + +E+G+S+++ LR +
Sbjct: 116 -GLLMSAAGFILPRRTIRGMGAQAEMRQNLEAVELCHMTRMLMEAGLSLERVLRIIGVQG 174
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L + + R A + ++ +R+ + QS + G + S
Sbjct: 175 RPLLPILIARIDRFNRLMKSGAERTQALDELGENKRIPVLRSYVVLMKQSSQLGAGVSHS 234
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L ++ E ++ ++ +G K+TV M+ F LP L ++I GPA++SI + +
Sbjct: 235 LDQIIDEAQNVERNRIREETNRIGAKMTVIMMAFMLPALFILIGGPAVVSIAEAL 289
>gi|256785513|ref|ZP_05523944.1| integral membrane protein [Streptomyces lividans TK24]
Length = 300
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 13/230 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L + ++ AG +++ R V + + ++++
Sbjct: 68 LRLMGPALVARYRRRIDLAGNPGGLTIDRYAARRAVYGFLGALGFLVFLLRGQY------ 121
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+L+ G V I + ++ R+ I+R PD LD+L + V +G+ QAL R
Sbjct: 122 ----LVALLLLAFGAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDR 177
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V+ G P ++E+ +T+ ++ R+ AF R + V AL Q + G
Sbjct: 178 VSTRYEG---PWADELRITLRQMDLGMGRREAFTELRRRNDSEQVAMFVTALQQGEELGA 234
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
I D+L L + R A +KAA PK T+ + F +P ++++
Sbjct: 235 PIVDTLVSLAKDMRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGA 284
>gi|292491526|ref|YP_003526965.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
gi|291580121|gb|ADE14578.1| type II secretion system protein [Nitrosococcus halophilus Nc4]
Length = 323
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/318 (16%), Positives = 121/318 (38%), Gaps = 30/318 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+L I +++F L A+++P+ G+ + A + R Q +A
Sbjct: 1 MAGDQLIFLIMVFLAVFLLATAIIVPTFGTS-------AQAAKNLRRRIQGAIEELDPAA 53
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S LR + L + + + + ++ +G + +L L + + L
Sbjct: 54 ISLLREKSFHKLSPLERWIE--GLPGMVRLSLLIKQSGRETAAYRVVLFAFSLGMGLGLL 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + L+ +V F P + I KR + P+ALD
Sbjct: 112 V--------------WVLARSPLLGFLVAFVSFIFPILRIRIERDKRIGKFEEQLPEALD 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ +++G + L +E++ PL++E T A++++ N + AF + R
Sbjct: 158 IMSRAMKAGYPFVETLHVASEEMRD---PLAKEFRTTFADINYGMNIKTAFLSLLQRVPS 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ ++ G ++ + L + + R + + + + +L+ I+ +P
Sbjct: 215 MSLMAVVTGVLVQRDTGGNLAEILEKIAAVVRGRFRFQRKVRTFTAEGRLSA-WILTLVP 273
Query: 309 VLI---LVIIGPAILSII 323
++ L +I P L ++
Sbjct: 274 FVLSAALHVINPEYLPML 291
>gi|21223384|ref|NP_629163.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8218173|emb|CAB92604.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 300
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 13/230 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L + ++ AG +++ R V + + ++++
Sbjct: 68 LRLMGPALVARYRRRIDLAGNPGGLTIDRYAARRAVYGFLGALGFLVFLLRGQY------ 121
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+L+ G I + ++ R+ I+R PD LD+L + V +G+ QAL R
Sbjct: 122 ----LVALLLLAFGAFWTEAGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQALDR 177
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V+ G P ++E+ +T+ ++ +R+ AF R + V AL Q + G
Sbjct: 178 VSTRYEG---PWADELRITLRQMDLGMSRREAFTELRRRNDSEQVAMFVTALQQGEELGA 234
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
I D+L L + R A +KAA PK T+ + F +P ++++
Sbjct: 235 PIVDTLVSLAKDMRRTDAQNARRKAARAVPKATLMITTFMVPATMILLGA 284
>gi|227114880|ref|ZP_03828536.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 326
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/296 (12%), Positives = 96/296 (32%), Gaps = 20/296 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ +F + + + + ++ + + + S ++ S LR
Sbjct: 8 LITLLVFCSVLMLFLAVNAWKKSRQQRMQREQRWQQILNEVSPSAADVASDSILRDEIRT 67
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L I L A ++ + L + + +I
Sbjct: 68 PLMGV------------PVIGRWL--AILWAQMTFIGWKKNLLQRSLSLAAVSLILGMIL 113
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ P + + +++ + +QK +++ + P+A+D + +G+
Sbjct: 114 GQRTLLPLTMGLIFTLVLFISIGML---LFRSTLQKHLKALRESLPEAIDAITRSCRAGV 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ VAE + + PL+ E L + + R M R L
Sbjct: 171 PVANTFSIVAEHL---TGPLANEFKTIDHWLRLGIPLRQVIQASATRVPMSEYRFFVVIL 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
I + G +G++L L + R R ++ + ++ + + + ++ P + +
Sbjct: 228 IINQEAGGRLGETLERLSATLRERRELQLKVQSKTSEARASAKIVAALFPGCLAYL 283
>gi|302558695|ref|ZP_07311037.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476313|gb|EFL39406.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 13/230 (5%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L K+ AG +++ R V + + ++++ +
Sbjct: 63 LRLMGPKQVAKYRRKIDLAGNPGGLTIDRYAARRAVYGFLGALGFLVFLMRGQLFMALLL 122
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
G V I + ++ R+ I+R PD LD+L + V +G+ QAL R
Sbjct: 123 LAF----------GAFWTEVGIWSAIRVRRDVIERTLPDFLDVLAVVVSAGLGFRQALDR 172
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V+ G P ++E+ +T+ ++ +R+ AF R + V AL Q + G
Sbjct: 173 VSSKYEG---PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEELGA 229
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
I D+L L + R A +KAA PK T+ + F +P ++++
Sbjct: 230 PIVDTLVSLAKDMRRTDAQNARRKAARAVPKATMMITTFMVPATMILLGA 279
>gi|86159246|ref|YP_466031.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775757|gb|ABC82594.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 320
Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/282 (15%), Positives = 102/282 (36%), Gaps = 22/282 (7%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ +A R ++++ ++ + SA R + + V + L+ + + L A
Sbjct: 25 RYLADRRSAELRRRLHTIGRGSALDADLLRRGRLAKGPVLQEALQHVPGARRLERLLEQA 84
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
S +++ L + L + +LG+ V + G P
Sbjct: 85 --DSSWTVARLGALTLAGGAVAALLGV------------SLASGGLGVAGLAIGGAALPI 130
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + + KR + + P+ALD++ + +G ++ A + VA ++ P+ E
Sbjct: 131 LGVLSARAKRSAKLSEQLPEALDMMARSLRAGHAVTSAFQVVASEM---PEPICVEFARA 187
Query: 226 IAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
E + A R ++ + + G ++ + L + R
Sbjct: 188 YEEQRLGLTLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYR 247
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILV---IIGPAILSII 323
+ +A + + + +I+ LP + V I+ P L ++
Sbjct: 248 FYGKLRALTGEGRASA-VILGALPFAVAVALSILNPEYLMVL 288
>gi|325111218|ref|YP_004272286.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324971486|gb|ADY62264.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 286
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/217 (20%), Positives = 84/217 (38%), Gaps = 5/217 (2%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
+ + +++ + + + +++ + L + Q L +VGF P +
Sbjct: 39 NSWFDRLVMQAGIEMAPVAVLMLCVLFAVSLGGLIFVLQENPLTTGLAAFVGFVIPLGIL 98
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ +RQ I R P +D L +G S+DQ L VA PL +EM ++ +
Sbjct: 99 MTMRSRRQGQILRQLPPMIDELARAARTGRSLDQCLEMVAT---DTPAPLGDEMERSVRK 155
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L A RT ++ +R AL + G + L L R +
Sbjct: 156 LQMGVTMNEALYELPERTGVNGLRILATALSVHQQTGGDLVRVLERLARTLRDRGMFLGR 215
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSII 323
+A + G + T ++I P +++ I P L+ +
Sbjct: 216 LRAITAGSRATALLMILLPPAILVFFIFRDPDYLASL 252
>gi|210614117|ref|ZP_03290053.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
gi|210150818|gb|EEA81826.1| hypothetical protein CLONEX_02266 [Clostridium nexile DSM 1787]
Length = 430
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 67/180 (37%), Gaps = 7/180 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + + + R+ + +P+ ++ + + +G++ R+
Sbjct: 250 VLVLGGVSAVLMIALKKQNEQKARKARKEQMLTDYPEIINKFALLLSTGMTTKNVWERIV 309
Query: 209 EDIG-----GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
++ EEM T E+ A+E F R + L Q+ +
Sbjct: 310 KNYEEQKICTGERAAYEEMRYTCNEMQSGITEAEAYERFGKRCGISVYMKFGALLAQNLK 369
Query: 264 YGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
GT + D LR + R A++ G KL PM L ++++++I PA LS+
Sbjct: 370 KGTKGMTDLLRNESDQAFENRKSRAKRLGEEAGTKLLAPM-FGMLAIVLVIVIVPAFLSM 428
>gi|116748936|ref|YP_845623.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698000|gb|ABK17188.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 321
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 84/205 (40%), Gaps = 4/205 (1%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P F +L + + L+ + +L + F P + + + ++R +R
Sbjct: 91 PAGFYLLLALVLAAVGYLIGTSLLKIPYSGLLCAVLLFFVPVLILMSRRKQRMEKFQRQL 150
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ALDL+ +++G + ++ VA+++ P+ E T+ E++F + A +N
Sbjct: 151 PEALDLVSRALKAGHAFSGGMKMVADEMDD---PIGPEFDKTLDEINFGVSVADALKNLA 207
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + A++ G ++ D + + R + + S + + +I
Sbjct: 208 ARVACPDLSYFVVAVLIQRESGGNLADLIASITHLIRERFKLYGRIRVLSAEGRASA-II 266
Query: 304 IFFLPVLILVIIGPAILSIIDTMKD 328
+ +P+ + + S I T+ D
Sbjct: 267 LIAIPIFVAAALLVVSRSYITTLAD 291
>gi|227819313|ref|YP_002823284.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
gi|227338312|gb|ACP22531.1| pilus assembly protein TadB [Sinorhizobium fredii NGR234]
Length = 317
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 5/196 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F + GI G ++++ + + + L + P V I R P+A
Sbjct: 90 FSLFGIAGAIGVWLVVQFLVPVNLVRIPLFLAICLLIPVVIIWRSRAVRIRKFAEKLPEA 149
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+ + +G + A+ VA ++ P+ E L EL++ A N +R
Sbjct: 150 LDVANRSLAAGHPLPAAISLVAREMPD---PIGTEFGLLSDELTYGVTLDDALMNLNDRV 206
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF- 305
++ + +L G ++ + L+ L R +++A+ K+ S ++T +
Sbjct: 207 GVEDLNLLAISLSVQAGTGGNLVEILQNLSKTLRDRFMLKAKVKSISAEGRITAIFMSLY 266
Query: 306 -FLPVLILVIIGPAIL 320
FL ++ + P
Sbjct: 267 PFLLFGMIRTLAPTYF 282
>gi|187478773|ref|YP_786797.1| pilus assembly protein [Bordetella avium 197N]
gi|115423359|emb|CAJ49893.1| putative pilus assembly protein [Bordetella avium 197N]
Length = 283
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/279 (17%), Positives = 105/279 (37%), Gaps = 11/279 (3%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
V +LR + + S RL + L + +++L + ++L +
Sbjct: 16 VLGLAALLRGEAPPAPSGLSPVGRLCWSCAWRLAHRLERLLARGS------RDRLTRLAW 69
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + + +P ++ + + L+ Q+ + + G P
Sbjct: 70 RAAWPAEV---PVAWLPAQIVLAVCVALLAAGLLMLVDVQVGLILLGPCVLAGVLCPVWQ 126
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ ++ + + P LD++ +C+E+G + A+ A L+ + +
Sbjct: 127 LGARIRLNRVRVAADLPFLLDVMTLCLEAGQGMVNAMYLAARHCP--PGLLTTALRQALN 184
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E+ +++ A R + V AL Q+DR G G LR L S+ R E A
Sbjct: 185 EMRAGRSQREALLAMAARLDVAGVHAWVAALTQADRLGGGAGGVLRALASQLREEAFQRA 244
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E+ A K+ P++ P L++ P ++ + +
Sbjct: 245 EEAAMRAPVKMLFPLVTCMFPCTFLILAFPLVVDLAPAL 283
>gi|260439392|ref|ZP_05793208.1| putative bacterial type II secretion system protein F domain
protein [Butyrivibrio crossotus DSM 2876]
gi|292808188|gb|EFF67393.1| putative bacterial type II secretion system protein F domain
protein [Butyrivibrio crossotus DSM 2876]
Length = 388
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 4/179 (2%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
++I ++ + +KR + +P+ + L + + +G+S A
Sbjct: 210 LPYFFAMFLIIAFLIYYYKIYNPKITKEKRDKLLIADYPELVSKLSLLMGAGMSTYNAFI 269
Query: 206 RVAEDIG--GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
++ ED G++ P E + + +S A+ F R + C L Q+
Sbjct: 270 KITEDYRKTGKTKPAYELLSECLNRISSGITETDAYMEFGKRCNVMCYIKLGNLLAQNIS 329
Query: 264 YGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
GT +I L+ + +R A+K G KL +PM + L V++++I+ PA +S
Sbjct: 330 KGTDNIFQLLKEETEKAFEDRKALAKKLGEEAGTKLLLPMTM-MLSVVLIIIVIPAFMS 387
>gi|242399929|ref|YP_002995354.1| Bacterial type II secretion system protein F domain protein
[Thermococcus sibiricus MM 739]
gi|242266323|gb|ACS91005.1| Bacterial type II secretion system protein F domain protein
[Thermococcus sibiricus MM 739]
Length = 353
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 10/259 (3%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+K R S+ + ++ + + L A + + +
Sbjct: 68 RKKELEKSFSHRFSEFILRRFRRPVESFTRSIKGLDYDLLRANIKMSKE------QYVAL 121
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I I I+ F LL P + + +L GF ++ + R +++A
Sbjct: 122 MIGVSIFTAIFAFILGVLLILPIDISIMLGLLGFIGGFLYMRNYLRFAWRGRVVEVEKAL 181
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P L + + +G+ I +A+ VA P+SEE L I ++ + + A F
Sbjct: 182 PYVLRHMASLLSAGVGIAEAMVSVAN---ADYGPISEEFELMIRDMHGGTSFEDALTRFE 238
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM- 302
R + V + ++++ R+G ++ D L L + E M+ + + V M
Sbjct: 239 ERMASENVSRVVKQILRATRFGGNLADILYKLAEDFSFEYRMKLVEYIQKVNGIAFVYMF 298
Query: 303 IIFFLPVLILVIIGPAILS 321
I +P L +V I A +
Sbjct: 299 ITIIMPTLFVVAILAASMM 317
>gi|317154601|ref|YP_004122649.1| type II secretion system F domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944852|gb|ADU63903.1| Type II secretion system F domain protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 324
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/318 (13%), Positives = 110/318 (34%), Gaps = 26/318 (8%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
L +A+ V +F L+ V + + ER R ++ ++ +
Sbjct: 1 MPVSLLIALGGGVIVFLLLTGVASLTRAGQAAAR-------ERVQHRLRRFALTGSEAGA 53
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
L + S L + + + + A R + +L
Sbjct: 54 IDLVLKQSAMSSMPWFNRMLSGMRLAAGLKRTISQANARGTAGVYLLACG---------- 103
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ R+ +++ ++ P + L +R + P+ALDL
Sbjct: 104 ----LLGLLGAYAGLAMADRLWVGMVLAWLLGSMPVWHLRRLKARRMGRFQAQLPEALDL 159
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +++G + +R VA + P+ E T+ E+++ + A N R ++
Sbjct: 160 MSRALKAGHTFGGGMRMVANEFAD---PIGGEFGKTLDEINYGMDVDRALANLQLRVDVE 216
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
++ ++ G ++ + + + R + + + S +++ ++ + F
Sbjct: 217 DLKFFVVSVNIQRETGGNLAEIIANIARLVRERFALFGKVRVLSAEGRISALLLSALPFF 276
Query: 308 PVLILVIIGPAILSIIDT 325
+L I P +S++ T
Sbjct: 277 IAGVLYFINPDYISLLWT 294
>gi|327189774|gb|EGE56918.1| putative tadB pilus assembly protein [Rhizobium etli CNPAF512]
Length = 317
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/307 (13%), Positives = 105/307 (34%), Gaps = 30/307 (9%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
++F+ V + + +R ++V +L
Sbjct: 3 LTLLYAAVFTAALVAVEAIMRGYFKTSERHRAVNHRLRLLEVSDDHR------------- 49
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
K+ + +K+ + ++ +L F ++ + + I +L + +
Sbjct: 50 --KTYGDMLKERGVARSWRQNPVMQRLLQ--FYAQSGIKFDARRFALFTIAGALLTWLVV 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + +L P++ + +R + + P+ALD+ +
Sbjct: 106 QFLVPSNLFRVPVFLLICLL-------IPALVVWRARARRMKAFELKLPEALDVATRSLA 158
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G + A+ V ++ P+ E L EL++ A N +R ++ +
Sbjct: 159 AGHPLPAAIALVGREMPD---PIGTEFGLLTDELTYGVTLDDALVNLADRVGVEDLNLLA 215
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPVLILV 313
+L G ++ + L+ L R ++ A+ +A S ++T + FL ++
Sbjct: 216 ISLSVQAGTGGNLVEILQNLSKTLRDRTMLRAKVRAISSEGRITAIFMSIYPFLLYAMIR 275
Query: 314 IIGPAIL 320
+ P
Sbjct: 276 ALSPTYF 282
>gi|156741692|ref|YP_001431821.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156233020|gb|ABU57803.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 318
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 110/307 (35%), Gaps = 30/307 (9%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + A+ + IF L+ + ++++ +++ + + +
Sbjct: 1 MNPSGVEPAVLFGLCIFMLLVSGYHL----------VRALQAREQLIARAEDLGADPEVL 50
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S LR + L + + + +++ +LR A + + +R+ V I +
Sbjct: 51 SDPLRRQ--SFLVRWADRYD--RSPQVQHLREQLRRA--AVPWKPSDYYAIRVGVSFIVV 104
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ + + GA ++ F P ++ + + +
Sbjct: 105 IICWMML----------DLPVFGAALVGAAAYFIVPRIFFFLRQNAYVRAFNKQLVEVTQ 154
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G+SI QA+ E P E T EL N +A + R
Sbjct: 155 LLANALRAGMSIQQAI---GEVSERVPEPARSEFRQTHHELLLGDNLPLALHDMRRRVCS 211
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A++ + G ++ L + + + +E E + + + + +++ LP
Sbjct: 212 RDLDVLINAIVVQHQAGGNLVRVLNGMANTLNERQRLEREIDSLTSEARFSA-LVVMVLP 270
Query: 309 VLILVII 315
+ L++I
Sbjct: 271 IFFLLMI 277
>gi|125973853|ref|YP_001037763.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum ATCC 27405]
gi|256004307|ref|ZP_05429289.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum DSM 2360]
gi|281418015|ref|ZP_06249035.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|125714078|gb|ABN52570.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum ATCC 27405]
gi|255991741|gb|EEU01841.1| Flp pilus assembly protein TadB-like protein [Clostridium
thermocellum DSM 2360]
gi|281409417|gb|EFB39675.1| Type II secretion system F domain protein [Clostridium thermocellum
JW20]
gi|316939949|gb|ADU73983.1| Type II secretion system F domain [Clostridium thermocellum DSM
1313]
Length = 268
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 76/192 (39%), Gaps = 5/192 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++ + Y F + +++ + P ++++KR+S + + D L
Sbjct: 36 VFYVLLAASVLFAIGYIFYHHIIGALILTPLALLYPKRKTKDIIEKRKSELNLQFKDLLY 95
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + +G S++ A + D+ + E+ + L + A E+
Sbjct: 96 SISASLTAGKSVETAFKEALNDLCILYPDPDTYIIREVEYIVRRLEMNETIEDALEDLAK 155
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R+ ++ ++N T R G ++ + +R + + ++ E L K ++
Sbjct: 156 RSHLEDIQNFTDVFKTCKRTGGNLVNVIRNSTNIINDKIEIKEEINTL-LAAKKFEQKVL 214
Query: 305 FFLPVLILVIIG 316
+P ++++I+
Sbjct: 215 SVMPFIMILILS 226
>gi|317489773|ref|ZP_07948272.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
gi|316911119|gb|EFV32729.1| hypothetical protein HMPREF1023_01971 [Eggerthella sp. 1_3_56FAA]
Length = 301
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 63/290 (21%), Positives = 112/290 (38%), Gaps = 12/290 (4%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+ + ++ + R VA + ++ R T +
Sbjct: 1 MLVLGAIGGLAAYEAFVRYAAPARRDVVAP--SSASASKDGHRAGGASRRRRATEAFGAF 58
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
F+ K E+ ++L AG E +R+V +
Sbjct: 59 AAFLDKRVPLTRADVESSRDRLSRAGV--ELEPETWRSIRVVSALG----CAGLAGVAAA 112
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ + GA G+ APS +S + R+ +I+ A PDA++LL I + +G I
Sbjct: 113 GMGFEPPAFAGAAACCAACGWMAPSWALSRRERNRRRAIELALPDAMELLGIAIAAGSPI 172
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALI 259
+Q R VAE + G PL+ E L E++ +R+ A E+ R + V T L+
Sbjct: 173 EQCFREVAESMDG---PLAREFSLVDREVNLLGRSREEALEHLGQRCRSQDVSAFTAQLM 229
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
Q+ G+S+ + L V + R EA ++ + KL + + + FLP
Sbjct: 230 QAVSQGSSLTEGLAVQAALARETAQAEAMERIRKMPTKLDIVLSLCFLPP 279
>gi|311697136|gb|ADQ00008.1| type II secretion system protein-like protein [marine bacterium
HP15]
Length = 290
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 45/232 (19%), Positives = 93/232 (40%), Gaps = 13/232 (5%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + L A G + S L ++P+ + + A +
Sbjct: 71 KELEPSLDATGLTAFDSRKRYLASCWLLPVAAGCVAF-------------PLMDFIAACV 117
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ ++ F P I + R + + + VE+G+S +++L+ ++
Sbjct: 118 VLFLAFFVPRKAIRAAGLTAEKEQNREAIELCQMTRMLVEAGLSPERSLKLISHQARELM 177
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L + + +R VA + + +RN + QS G+ + L +
Sbjct: 178 PRLIRRIDRFNRVMESGADRTVALDELGKNRNLTVLRNYVSLMKQSGTLGSKVAGGLDQI 237
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V E + E +++ +G ++TV M++F LP L L+I GPA+L+I+D +
Sbjct: 238 VEEAQHEERSNLKEETNKIGARMTVIMMVFMLPSLFLLIGGPAVLAIMDAFQ 289
>gi|261867451|ref|YP_003255373.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412783|gb|ACX82154.1| TadB [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 295
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 11/192 (5%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I I ++ + + ++ + + + + +
Sbjct: 72 AISCFIFFAFFVINVAYIHIDRLVFCLIFLVGFVLFIWKLGQY-------RNKKTFNAMF 124
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ + +L SG + QAL R +D+ GQ L EE ++ + FE+ Y
Sbjct: 125 PEVIQILNAAATSGAGLLQALERCGKDLTGQ---LGEEFKSIHKRIAIGEDPVSVFEDSY 181
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+R + + G I + + L ME +KKA + +++ ++
Sbjct: 182 DRYPYKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIV 241
Query: 304 IFFLPVLILVII 315
F PV +
Sbjct: 242 ACF-PVGFFFFM 252
>gi|238750901|ref|ZP_04612398.1| Type II secretion system protein F domain protein [Yersinia rohdei
ATCC 43380]
gi|238710815|gb|EEQ03036.1| Type II secretion system protein F domain protein [Yersinia rohdei
ATCC 43380]
Length = 272
Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 4/196 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ F + V++ ++ I +K S K+ +P+ L ++ +
Sbjct: 52 IAYSICIFSVNLFYFHLNTVLIFIFIVTSIIYFQIKAARKKHYSLFKQDFPEVLLMINMA 111
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
SG SI+Q L R ++I + PL E+ L L+ + + F + Y R
Sbjct: 112 SSSGASINQVLERCGQEI---TGPLGSELRLICRRLNLGESPESVFHDAYQRFNFPEFYF 168
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++ + + G + D L + E +K + +++V II +P+ +
Sbjct: 169 LITIILLNLQQGGQLKDLTNRLSQIISKNKTAEQKKATMTAETRMSV-NIISVMPIAFSL 227
Query: 314 IIGPAILSIIDTMKDH 329
++ + I++M +H
Sbjct: 228 LLYFIDSTSIESMWNH 243
>gi|302037433|ref|YP_003797755.1| pilus assembly protein TadB [Candidatus Nitrospira defluvii]
gi|300605497|emb|CBK41830.1| Pilus assembly protein TadB [Candidatus Nitrospira defluvii]
Length = 313
Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 92/207 (44%), Gaps = 7/207 (3%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ P+ L+ + G L + L + A+++I VG A ++S R++ +
Sbjct: 80 VTTPLGALVGACLAPAGASVALAFVDALGMPAMLVIATVGSVATPAYLSWRAAARRAHFQ 139
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R PDALD++ + +G + ++ VAE+ P+ E + E++F + A +
Sbjct: 140 RQLPDALDMMARSLRAGHAFLAGMKIVAEEF---PAPIGAEFRSVVEEVAFGVSVTEALQ 196
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + +++ G ++ + L + TR + A+ +A S +L+
Sbjct: 197 RLTARVDSPALNFFVTSVLIQRESGGNLAEILNTISRMTRKRFELAAKVRAVSAEGRLSA 256
Query: 301 PMIIFFLPVL---ILVIIGPAILSIID 324
+I+F LP +L+II P + ++
Sbjct: 257 -VILFALPFALGGLLLIINPDYVLLLF 282
>gi|284989775|ref|YP_003408329.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063020|gb|ADB73958.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 313
Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/320 (18%), Positives = 117/320 (36%), Gaps = 14/320 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+AT + + A + L+ P S L R+ + + T+ +
Sbjct: 1 MNATLAGMLLGLAAAAGVLLVVTFAPPFRSVRLVDRLAPYVHDTPPPSRLLGTATEAGLL 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++ R + + + + +L A G S+ + V ++V + L
Sbjct: 61 TAVRRLFGPAVAD--GARFIDRVLGGRTAVRRRLDALG--SDAGVEDFRVEQVVWGGLGL 116
Query: 129 ILGIIWIFGYDKLLE----YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + L L A ++ G +G W++ VQ+R+ + +P
Sbjct: 117 LGAALLATAGSLLAGDVNVLSVALLCVAGLVGGVLG---RDWWLTQQVQRREELLLTEFP 173
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+LL + V +G S A+ RV GG L+ E+ + A + +
Sbjct: 174 VVAELLALAVTAGESPTAAIARVTRLSGG---ELARELGAALGRARAGVPLADALQQVAD 230
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
RT +D + L+ + GT + + LR ++ R + + VP++
Sbjct: 231 RTSLDPLARFVDGLLVALERGTPLAEVLRAQAADVREAGKRRLLEAGGRKEIAMMVPVVF 290
Query: 305 FFLPVLILVIIGPAILSIID 324
LPV +L + P ++SI+
Sbjct: 291 LVLPVTVLFALYPGLISIVS 310
>gi|238755456|ref|ZP_04616796.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
gi|238706297|gb|EEP98674.1| hypothetical protein yruck0001_3330 [Yersinia ruckeri ATCC 29473]
Length = 268
Score = 89.1 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/203 (20%), Positives = 97/203 (47%), Gaps = 1/203 (0%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++ FLIL I + ++ + + +I I P++ + L++K++ +
Sbjct: 62 MLITACFLILSIWVLSISFISIDIYEKYTLHILIFIATASIIIPNLIKNMLLRKKKKLLT 121
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A P +D++ C+++G++I+ AL A++ + LS + + + + +
Sbjct: 122 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEI-IGLEKSIK 180
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +G+++ + L L +E + +L+ AE+ + L KLT+
Sbjct: 181 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 240
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
P+ +F + I++I+ P+IL I
Sbjct: 241 PLFLFMVIPFIVLILSPSILGFI 263
>gi|119717341|ref|YP_924306.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119538002|gb|ABL82619.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 326
Score = 89.1 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 96/297 (32%), Gaps = 17/297 (5%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ ++ L + + ER S+ R
Sbjct: 4 LLVSGAVAVGLGLLTALLLLAGPARSAEPTPAERVTAYVGAAGDGGTAILSAGHRPDALA 63
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
++ +++ I ++L AG E + +L+L
Sbjct: 64 QASGAAARVLRSNRGLEDRIRHRLEGAGSHLESAE-------------WLLLHTAVFVLT 110
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ V +L VG P +++ +R+ + A P+ L L+ + +G+
Sbjct: 111 GLVGLLLGTGNVVLFVLFLVVGAVGPWLYLGVRRGRRRKAFSAAVPETLQLMSGSLSAGL 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ Q+ V + P++ E + E + A E +R + A A+
Sbjct: 171 SLAQSAETVTREGAD---PVAAEFRRALVETRLGVPLEDALEGVADRFDSADLAWAVMAI 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ G ++ + L + R + + A S +L+ ++ LPV L +
Sbjct: 228 RIQRQVGGNLAELLDTVAETMREREYVRRQVAALSAEGRLSA-WVLGSLPVAFLTYL 283
>gi|10334986|gb|AAD38173.2|AF152598_2 TadB [Aggregatibacter actinomycetemcomitans]
gi|26000716|gb|AAN75212.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 89.1 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 6/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ +F + + + LI VGF + K + +P+ +
Sbjct: 71 IVISCFILFAFFVINVAYIHIDRLVFCLIFLVGFVLFIWKLGQYRNK--KTFNAMFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG + QAL R +D+ GQ L EE ++ + FE+ Y+R
Sbjct: 129 QILNAAATSGAGLLQALERCGKDLTGQ---LGEEFKSIHKRIAIGEDPVSVFEDSYDRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G I + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACF- 244
Query: 308 PVLILVII 315
PV +
Sbjct: 245 PVGFFFFM 252
>gi|126737250|ref|ZP_01752985.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
gi|126721835|gb|EBA18538.1| type II/IV secretion system protein, TadC subfamily [Roseobacter
sp. SK209-2-6]
Length = 322
Score = 89.1 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 91/222 (40%), Gaps = 9/222 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R++ + +L++ ++ + P ++ VI +G V F W
Sbjct: 81 RAQKAAIAFSPQQLMLIMMGVAAFAFAGLSVGTSTGLPLRIMASIVIGVGGVFF-----W 135
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ R + I+ PDA++L++ + G ++ V+++I PL+ E +
Sbjct: 136 VNKKAATRMAKIEEQLPDAVELMVRSLRVGHPFTSTVQIVSDEIED---PLATEFGIIAD 192
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E ++ + A + R + +R + A+ + G ++ + L L R+ +
Sbjct: 193 ESAYGRDIGEALKEMAERLNIQDLRFLSVAVTIQQQSGGNLAEVLAGLAGVIRARFRLFR 252
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ KA + K + + P+L L+ I + D++ DH
Sbjct: 253 KVKAITAEAKWSGK-FLSAFPLLALIAILVKDPNYYDSVMDH 293
>gi|319779647|ref|YP_004130560.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
gi|317109671|gb|ADU92417.1| Flp pilus assembly protein TadB [Taylorella equigenitalis MCE9]
Length = 281
Score = 89.1 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/198 (17%), Positives = 78/198 (39%), Gaps = 4/198 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
L Y I+ V P + L++KRQ + + +PD L L
Sbjct: 58 AAVASVCVGLFIYLLTRSWMFSIVFAVVILILPPLGAKWLIKKRQKKLIQQFPDFLLSLS 117
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++SG + +++ + E P+S+E L + ++ + + + R +
Sbjct: 118 NALKSGAGLQHSIKLINE---TSEKPISQEFALFLHQIRLGSSVEESLTVLLQRNPSMNM 174
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ S + G ++ + L VL + R L+ + A + ++ I+ LP+ +
Sbjct: 175 SQFVTLVKVSYKTGGNLANMLEVLSTNMRENNLLIKKIDALTSQSRMQS-WIMTLLPIFL 233
Query: 312 LVIIGPAILSIIDTMKDH 329
L+++ ++ + +H
Sbjct: 234 LMVLSVVAPNLTNYFWEH 251
>gi|307548791|dbj|BAJ19113.1| TadB [Aggregatibacter actinomycetemcomitans]
gi|307548806|dbj|BAJ19127.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 89.1 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 6/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ F + + + LI VGF + K + +P+ +
Sbjct: 71 IVISCFIFFAFFVINVAYIHIDRLVFCLIFLVGFVLFIWKLGQYRNK--KTFNAMFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG + QAL R +D+ GQ L EE ++ + FE+ Y+R
Sbjct: 129 QILNAAATSGAGLLQALERCGKDLTGQ---LGEEFKSIHKRIAIGEDPVSVFEDSYDRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G I + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACF- 244
Query: 308 PVLILVII 315
PV +
Sbjct: 245 PVGFFFFM 252
>gi|254173151|ref|ZP_04879824.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
gi|214032560|gb|EEB73389.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
Length = 358
Score = 89.1 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 42/284 (14%), Positives = 113/284 (39%), Gaps = 8/284 (2%)
Query: 37 GSGELEKRMKSVAV---EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
L++R++++ E E ++ + ++ R + + + +
Sbjct: 31 RRKSLQERLRALKEIQKETEESKESERERELEEILEWRRKEITTSFGERLAEAFLKRFKG 90
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVR-LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
E++ ++ + + + + + + I+ I + F + LLE F +
Sbjct: 91 PVESLTKSIKGLDYDLYRANIRMSKEKYVALMIVTSIFLGAFAFAFGLLLEMDFFTSMML 150
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+L GF + + ++R + +++A P L + + +G+ I +AL VA+
Sbjct: 151 GLLGFIGGFLYMRNYPRIVWRRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAK--- 207
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
SEE L + ++ + + A E F + + V + ++++ ++G ++ + L
Sbjct: 208 ADYGVASEEFELIVRDMRAGASFEEALERFEEKMGSESVSRVVKQILRAIKFGGNLAEIL 267
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-LPVLILVII 315
+ + E M+ + + + M + +P + +V I
Sbjct: 268 YKMAEDFAFEYRMKLVEYVQKVNGIAFIYMFMTIVMPTMFIVAI 311
>gi|296131924|ref|YP_003639171.1| Type II secretion system F domain protein [Thermincola sp. JR]
gi|296030502|gb|ADG81270.1| Type II secretion system F domain protein [Thermincola potens JR]
Length = 313
Score = 89.1 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 50/322 (15%), Positives = 103/322 (31%), Gaps = 44/322 (13%)
Query: 10 DATELAVAITTAVSIFSLIYAVV---IPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+ + +A ++F LI+ + + + L K +K + VE++ R
Sbjct: 1 MDRSWLLLVVSAGAVFCLIWGLYCLGVYYTNNQRLWKTLKPIMVEKKRERSSLFL----- 55
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
N + + L+ AG + S
Sbjct: 56 ------------WFGNRYDRTESGR-----RLAALLKNAGIGIKPSEY------------ 86
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F +L + + Y + +I + + ++ QK ++ R PD
Sbjct: 87 FALLVVFFGLSYYLAHNFLDLFFPIDIICAYLLVRVGSTKFLKVKQQKLVDALNRQLPDI 146
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LL V++G++I Q + VA Q P +L + AF +
Sbjct: 147 CRLLSSSVKAGLNIQQGIELVAR---EQKPPAQTVFTELAHQLQLGNTLENAFSHIMEEL 203
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+R +I + G ++ L + + + E K + K MI+ F
Sbjct: 204 PSKELRLMGSTIIVQRKAGGNMARVLEEMSQTLENRDRVNQELKGKTAETKFVA-MILPF 262
Query: 307 LPVLILVIIG---PAILSIIDT 325
+P++ +++ P + T
Sbjct: 263 MPIVAGLVLNISFPGFFRPLFT 284
>gi|86360588|ref|YP_472476.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
gi|86284690|gb|ABC93749.1| putative tadB pilus assembly protein [Rhizobium etli CFN 42]
Length = 317
Score = 89.1 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 108/312 (34%), Gaps = 30/312 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSG-ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
++F+ V + + +R ++V +L L
Sbjct: 1 MTLTLVYAAVFTAALVAVEAIMRGYFKTSERHRAVNHRLSLL---------------ELS 45
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K+ + +K+ + ++ +L F ++ + + I +L +
Sbjct: 46 DDHRKTYSDMLKERGVAGSWRQTPMMQRLLR--FYAQSGIKFDARRFALFAIAGALLTWL 103
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
I + + + +L P++ + +R + P+ALD+
Sbjct: 104 VIQFLVPSTLFRVPVFLLICLLA-------PALVVWRARARRMKKFELKLPEALDVANRS 156
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G + A+ VA ++ P+ E L EL++ A N +R ++ +
Sbjct: 157 LAAGHPLPAAIALVAREMPD---PIGTEFGLLSDELTYGVTLDDALVNLADRVGVEDLNL 213
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPVLI 311
+L G ++ + L+ L R +++A+ +A S ++T + FL +
Sbjct: 214 LAISLSVQAGTGGNLVEILQNLSKTLRGRTMLKAKVRAISSEGRITAIFMSVYPFLLYAM 273
Query: 312 LVIIGPAILSII 323
+ + P +
Sbjct: 274 IKALSPTYFDPL 285
>gi|253580449|ref|ZP_04857714.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848179|gb|EES76144.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 257
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 83/195 (42%), Gaps = 7/195 (3%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ +Y F ++L+ V + ++++R+ ++ + DAL L + V
Sbjct: 32 ALALCIMADYLFYKSKWVLLLMLPVPVFYLKWQKNRMIRERRKNLNYQFKDALTSLSVAV 91
Query: 195 ESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++G S++ A++ D+ + EE ++ + F + R+Q++ +
Sbjct: 92 QAGYSVESAVKTCVRDLERLYGKGTDIVEEFRYIESQQHISVPLEELFLDLGERSQIEDI 151
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
N + R G + ++ + + ++ E +A +L K + MI+ +PV I
Sbjct: 152 ENFASVFYTAKRTGGDMNRVIQKVSRMLGDKIDVKKEIEA-TLAAKKSEQMIMSLMPVGI 210
Query: 312 LVII---GPAILSII 323
++ + P LS++
Sbjct: 211 ILYLQMTSPGFLSVL 225
>gi|307721765|ref|YP_003892905.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
16294]
gi|306979858|gb|ADN09893.1| hypothetical protein Saut_1849 [Sulfurimonas autotrophica DSM
16294]
Length = 278
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 9/231 (3%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
KL+ AG + + + I IL + +L+ F +
Sbjct: 53 AKKAEFKLKLQRAGLKRK---------QFNEIIFASILAGASLIFLVFILDLSFLNELFL 103
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++ + P +++ ++ R I+ P +DLL+I +E G ++ A+ +V +
Sbjct: 104 FVIGIGIAVFMPYLYLQEQIKARIKRIENDLPIFIDLLIIILEGGGGLNNAIDKVTTEGE 163
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
P E + +A+ N NRT D + + S+ G +
Sbjct: 164 SVLGPDLLEESKKFKNEFITYSSDIAYTNLVNRTGSDSIATIVGFMRLSEETGIGVKSIF 223
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E +S ++ EKKAA++ +T M IF LP +I +I P +
Sbjct: 224 ENQAQELKSMEMLNIEKKAATMNIGITFVMFIFILPAVIAMIAFPMAADAL 274
>gi|325964125|ref|YP_004242031.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470212|gb|ADX73897.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 310
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/312 (20%), Positives = 117/312 (37%), Gaps = 41/312 (13%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ V++ L V++PS L++R + + S+ SRL
Sbjct: 7 AVILLVAVSLLGVTVLLPSAPRVPLDRR--------------RPFESEPPSSLSRLAGSA 52
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+S + ++K E L AG R + ++ + + +++GI+ +
Sbjct: 53 VRSFERLLTGRDVKLFSRAE-----LENAGLRLSQA--EFFLLVGIGGSVGMLVGIVTVG 105
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
LL VG ++L G KR+++ D L LL + +
Sbjct: 106 PLVGLLLTVVAPFVGKLVLGFLAG-------------KRRAAFDSQLGDTLQLLSGGLRA 152
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G SI +A+ A P SEEM I E S + A + R Q + +Q
Sbjct: 153 GHSILRAIDAAA---AESQKPTSEEMRRVITETSLGRDLLAALNDTAERMQNEDFVWISQ 209
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP---VLILV 313
A+ + G ++ D L R ++ KA + K + I+ +P V +LV
Sbjct: 210 AIQINREVGGNLADVLDQTGETIRERSEIKGHIKALAAEGKFSA-YILIAMPFGIVAMLV 268
Query: 314 IIGPAILSIIDT 325
+ P ++ + +
Sbjct: 269 AMSPTYMNSMFS 280
>gi|289769409|ref|ZP_06528787.1| integral membrane protein [Streptomyces lividans TK24]
gi|289699608|gb|EFD67037.1| integral membrane protein [Streptomyces lividans TK24]
Length = 291
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 61/301 (20%), Positives = 118/301 (39%), Gaps = 26/301 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A+ A++++ + V + ++ A + L + A+ L R
Sbjct: 1 MALLMALAVWGVFAGVRMY-----------RAEAKLPDDLTLALEVGATRTGAAHSLIDR 49
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
V L L + ++ AG +++ R V + + ++++
Sbjct: 50 MGMRYAPAV--LRLMGPALVARYRRRIDLAGNPGGLTIDRYAARRAVYGFLGALGFLVFL 107
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+L+ G V I + ++ R+ I+R PD LD+L + V
Sbjct: 108 LRGQY----------LVALLLLAFGAFWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVS 157
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G+ QAL RV+ G P ++E+ +T+ ++ R+ AF R + V
Sbjct: 158 AGLGFRQALDRVSTRYEG---PWADELRITLRQMDLGMGRREAFTELRRRNDSEQVAMFV 214
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL Q + G I D+L L + R A +KAA PK T+ + F +P ++++
Sbjct: 215 TALQQGEELGAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKATLMITTFMVPATMILLG 274
Query: 316 G 316
Sbjct: 275 A 275
>gi|307133500|dbj|BAJ19012.1| TadB [Aggregatibacter actinomycetemcomitans]
Length = 295
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 6/188 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ F + + + LI VGF + K + +P+ +
Sbjct: 71 IVISCFIFFAFFVINVAYIHIDRLVFCLIFLVGFVLFIWKLGQYRNK--KTFNAMFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG + QAL R +D+ GQ L EE ++ + FE+ Y+R
Sbjct: 129 QILNAAATSGAGLLQALERCGKDLTGQ---LGEEFKSIHKRIAIGEDPVSVFEDSYDRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G I + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFITIVRTNLSKGGQIREVISRLGRVIADSNKMEKKKKAMTSEARMSAIIVACF- 244
Query: 308 PVLILVII 315
PV +
Sbjct: 245 PVGFFFFM 252
>gi|149178504|ref|ZP_01857092.1| secretion system protein TadB [Planctomyces maris DSM 8797]
gi|148842619|gb|EDL56994.1| secretion system protein TadB [Planctomyces maris DSM 8797]
Length = 310
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 106/308 (34%), Gaps = 39/308 (12%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D++ +A+ AV++F L + + L K E K+ +
Sbjct: 1 MDSSSIALICFAAVTVFVLAAYLFVRDLTGVAGSK--------GEKFSKRPRLRRIHNVF 52
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ T +L L+ L++
Sbjct: 53 DQQPATSVLGKFDQSFDRLVLENGSDFTP------------------FSAFLLLIACGLA 94
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I G I+I+ A I G A + + +KR +I+ P+ +D
Sbjct: 95 IGGSIFIYTNQP----------LAGIAGMIGGMIAVLIILHYRRKKRMQTIQEELPEMID 144
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL +G S++QA+ V E+ G PLS E +L + ++ +R Q+
Sbjct: 145 LLARSTHAGASLEQAIAIVGEETKG---PLSFEFRRCARQLDMNLSVPAVMKSLSSRIQL 201
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ T L+ + G ++ +L + R + KA++ + + ++ P
Sbjct: 202 IDLKILTSTLMLYRKTGGNLPANLERMADVVRDRINYRRQMKASTGAGRASALLMTVVAP 261
Query: 309 VLILVIIG 316
V +V++
Sbjct: 262 VAFVVLLV 269
>gi|329928959|ref|ZP_08282769.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
gi|328937211|gb|EGG33638.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
Length = 290
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 103/265 (38%), Gaps = 9/265 (3%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR----L 121
RL LR L +L + +L +R + S+ + +R +
Sbjct: 25 GERYHRLGRLSMDGLRLQRLAPPLLFLLERGKVPMRLPIVFYRMQGSVQKIHGLRHSAEM 84
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSS 178
+ + L W+ L V ++ +G P + +L +K R+
Sbjct: 85 TLLFMAEALAYTWLILIGGCLWSLLSGDVIGLLAGFALGALLPVALVKDLHKKVTLREQD 144
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I P+ L+ +++ V +G ++ +A+ E S PL E+ + E Q A
Sbjct: 145 IVMELPELLNKIVLLVGAGETVQRAIIHCVERNKDTSHPLYAELKRMVLEWEGGHPFQQA 204
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPK 297
FE F R + V T ++ + R G + +LR L +R + K
Sbjct: 205 FEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRKAITRTRGEQASSK 264
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +PM++ F+ ++I+++ PA + +
Sbjct: 265 LVLPMVVIFM-IVIVLLGAPAFMMM 288
>gi|227326305|ref|ZP_03830329.1| putative type IV pilus protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 326
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/296 (12%), Positives = 98/296 (33%), Gaps = 20/296 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ +F + +++ + ++ + + + S ++ S LR +
Sbjct: 8 LITLLVFGCVLMLLLAVNAWRKSRQQRMQREQRWQQILNEVSPSAAAVASDSILRDEIAT 67
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L I L A ++ + L + + +I
Sbjct: 68 PLMGV------------PVIGRWL--AILWAQMTFIGWKKNLLQRSLALAAVSLILGMIL 113
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ P + + +++ + +QK +++ + P+A+D + +G+
Sbjct: 114 GQRTLLPLTMGLIFTLVLFISIGML---LFRSTLQKHLKALRESLPEAIDAITRSCRAGV 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ VAE + + PL+ E L + + R M R L
Sbjct: 171 PVANTFSIVAEHL---TGPLANEFKTIDHWLRLGIPLRQVIQASATRVPMSEYRFFVVIL 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
I + G +G++L L + R R ++ + ++ + + + ++ P + +
Sbjct: 228 IINQEAGGRLGETLERLSATLRERRELQLKVQSKTSEARASAKIVAALFPGCLAYL 283
>gi|261409010|ref|YP_003245251.1| Type II secretion system F domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|261285473|gb|ACX67444.1| Type II secretion system F domain protein [Paenibacillus sp.
Y412MC10]
Length = 290
Score = 88.3 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 5/198 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSSIKRAWPD 185
L W+ L V ++ +G P + +L +K R+ I P+
Sbjct: 92 ALAYTWLILIGGCLWSLLSGEVIGLLAGFGLGALLPVALVKDLHKKVTLREQDIVMELPE 151
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+ +++ V +G ++ +A+ E S PL E+ + E Q AFE F R
Sbjct: 152 LLNKIVLLVGAGETVQRAIIHCVERNEDASHPLYAELKRMVLEWEGGHPFQQAFEQFNKR 211
Query: 246 TQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ V T ++ + R G + +LR L +R A + KL +PM++
Sbjct: 212 CGVQEVSIFTTTVLLNFRRGGNDFVLALRDLSRVLWEKRKAIARTRGEQASSKLVLPMVV 271
Query: 305 FFLPVLILVIIGPAILSI 322
F+ ++I+++ PA + +
Sbjct: 272 IFM-IVIVLLGAPAFMMM 288
>gi|253687072|ref|YP_003016262.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753650|gb|ACT11726.1| type II secretion system protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 326
Score = 88.3 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/296 (12%), Positives = 97/296 (32%), Gaps = 20/296 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ +F + +++ + ++ + + + S ++ S LR
Sbjct: 8 LITLLVFCSVLMLLLAVNAWRKSRQQRMQREQRWQQILNEVSPSAAVVASDSILRDEIRT 67
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L I L A ++ + L + + +I
Sbjct: 68 PLMGV------------PVIGRWL--AILWAQMTFIGWKKNLLQRSLALAAVSLILGMIL 113
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ P + + +++ + +QK +++ + P+A+D + +G+
Sbjct: 114 GQRTLLPLTMGLIFTLVLFVSIGML---LFRSTLQKHLKALRESLPEAIDAITRSCRAGV 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ VAE + + PL+ E L + + R M R L
Sbjct: 171 PVANTFSIVAEHL---TGPLANEFKTIDHWLRLGIPLRQVIQASATRVPMSEYRFFVVIL 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
I + G +G++L L + R R ++ + ++ + + + ++ P + +
Sbjct: 228 IINQEAGGRLGETLERLSATLRERRELQLKVQSKTSEARASAKIVAALFPGCLAYL 283
>gi|253580448|ref|ZP_04857713.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848178|gb|EES76143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 348
Score = 88.3 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 75/189 (39%), Gaps = 6/189 (3%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ + L G ++ +QKR + +P + + V++G
Sbjct: 156 WESPADTSGMLLTGLFLIAAMAILVMKGREEQVQLQKRYEELLMDYPGLIMKFTLLVQAG 215
Query: 198 ISIDQALRR----VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++ +A ++ P EE+ + E+ + A+ F R +
Sbjct: 216 MTVRKAFQKISLDYGRKRKRNPRPAYEEIRIVCYEMESGVSESEAYRRFGERCGQAKYKT 275
Query: 254 ATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
LIQ+ + G+ + D L +E ER +A + KL VPMI+ L V++
Sbjct: 276 FATLLIQNLQKGSRQMADMLERESTEAWEERKRKARVLGEAAATKLLVPMIM-MLIVVMA 334
Query: 313 VIIGPAILS 321
+++ PA +S
Sbjct: 335 IVMIPAFMS 343
>gi|302553402|ref|ZP_07305744.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471020|gb|EFL34113.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 307
Score = 88.3 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 100/315 (31%), Gaps = 10/315 (3%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
L + + I IYA+V + S + VA + + +
Sbjct: 1 MNLTMPLVVGAIIGLGIYALVRALMPSKRSA--ISQVARIDAMRARSSAYESARAEREKG 58
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ V + L+ ++ L E S L ++++ + L G
Sbjct: 59 RLGALRAEVGLRVSEFYLQQGWEQRSLRADLA----VLERSWEKFLATKVLLGVAGLFFG 114
Query: 132 -IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ + + + V +L + F P + + +++ ++R LDL+
Sbjct: 115 PFLFAIVWTLGVGRSPIIPVWLALLFAAIFFFLPDLEVRRDAAEKRRDLRRVIGAYLDLV 174
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G + +AL AE G ++ A ++
Sbjct: 175 SMSLAGGRGLPEALMAAAEVSDGW--ANQRIRNALSDARITGVSQWQALGALGEELGVEE 232
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+++ + +L G + +SL R L E E A + V +
Sbjct: 233 LKDLSASLALVADDGAKVRESLASRAETMRHRELAEIEGSAGEKSQSMLVAQ-LLLCAGF 291
Query: 311 ILVIIGPAILSIIDT 325
++ +I PA + +
Sbjct: 292 LVFLIFPAAMRVFQV 306
>gi|331002544|ref|ZP_08326061.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330409147|gb|EGG88603.1| hypothetical protein HMPREF0491_00923 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 284
Score = 88.3 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 8/225 (3%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
KL + + +Y ++R ++L ++ Y V A + +G
Sbjct: 65 KIKLISEIYGKQYGPYYFYILRGGQITFAIVLSVLMFLITGLSGNYKL---VIAGLTVGG 121
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ +++ + R+ + R +P L L + V +G+ I +A RVA+D G L
Sbjct: 122 MMVWYLDEVLNDKINSRRDELLRDYPGMLSKLTLLVNAGVPIREAWVRVADDNEGL---L 178
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVS 277
+EM T ELS ++ F R + ++ + +IQ+ + G++ + L+ + +
Sbjct: 179 YQEMRNTAMELSNGIQEIEVYKAFGERCSIKSLKKFSTMMIQNLQKGSNEVVIFLKDMSN 238
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
E E+ E ++K KL +P+ + FL V +++II P S+
Sbjct: 239 EAWEEKKHEVKRKGEKASSKLIMPIGLIFLGV-MILIIVPMFASL 282
>gi|104779904|ref|YP_606402.1| type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
gi|95108891|emb|CAK13587.1| putative type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
Length = 295
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 55/313 (17%), Positives = 120/313 (38%), Gaps = 19/313 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ +A+ +F+ + + +R+ R + L+
Sbjct: 1 MALMLSALCLFAGFVLLALQLAWQWRARQRVARRLQGRMAR---------DERLGDWLQW 51
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S L +++L D L G+R + V+L +P++ +I+ ++
Sbjct: 52 LGSSPLGRRLQRL-------DGETQALLDRLGWRRSRQRALFAAVQLGLPLLAMIVVLVM 104
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ G + + V + G+ P ++ +RQ I R + LL I
Sbjct: 105 VHGLPGERRGHWVVLVLCALGA---GYLLPKRLLAAAAARRQRRIAREVSVLIPLLRILF 161
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G++++QALR +A++ +S+E+ L + + E +D + +
Sbjct: 162 ETGLAVEQALRVLAQEGRSLVPNISDELRLVLQRVDSGLALGPELEKSARLLAVDELIDT 221
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L Q G+ SL L RL +++ + + K++ M++F P L++V+
Sbjct: 222 CVILQQLLVQGSGSMKSLLALKELLDDRRLTGLQERVSKMSAKMSAVMMVFLFPALLIVL 281
Query: 315 IGPAILSIIDTMK 327
GP ++ +
Sbjct: 282 AGPGFSALARALG 294
>gi|220922535|ref|YP_002497837.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947142|gb|ACL57534.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 314
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 35/302 (11%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ ++F + + +R+ K R
Sbjct: 6 LIYFLIFSAVFLTVQFGFLFFGRGVFTRRRLN-------RRLSAIEDGTYKPYLEPLRRK 58
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ AG S L
Sbjct: 59 ASPSDASGLL-----------SSLTTIFAQAGGASAAPAITLTSAS----------AFAL 97
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ L + + +L G ++ ++R ++ P+ L++++ +
Sbjct: 98 CWAGSYALVRSVPVGMLLALLGASTGGIGTMYYL---RRRRVAAFGEQLPELLEIMVRSL 154
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G + A A+ + P E+ +T E+ + + A N Y R + +R
Sbjct: 155 RAGHPLVVAFTLAAKQMPD---PAGSEIGITADEIGYGRDVGAALYNLYRRVGFEDLRFF 211
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G ++ + L L + R + +A S +L+ + + P L+ +
Sbjct: 212 ATAVTIQAQTGGNLAEILARLATLLRERARLRQRVRALSAEGRLSA-LALSLFPFLLAGL 270
Query: 315 IG 316
I
Sbjct: 271 IT 272
>gi|296122065|ref|YP_003629843.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296014405|gb|ADG67644.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 285
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 5/200 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR--VGAVILIGYVGFCAPSVWISNLVQK 174
L+++ + I I+ ++ + G + + F L+ L VGF P ++ +
Sbjct: 44 LMLQSGLGISPGIVLMLCLLGGITVGGFIFVLQENFLTTALAAVVGFLLPVFFLMYVRSS 103
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
RQ+ I P L+ L +G S++Q L+ VA PL +E+ L + +
Sbjct: 104 RQNQILGQLPAMLEELARAATTGRSVEQCLQLVA---ADTPSPLGDELQLCVRRMQMGMP 160
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A + +RT + +R L + G + L L R +A +
Sbjct: 161 MRDAVADLPDRTGLMTLRLFCMTLGVHQQTGGDLVWVLEQLSKTIRDRLQYLGRLRAMTA 220
Query: 295 GPKLTVPMIIFFLPVLILVI 314
+ T +++ P +++
Sbjct: 221 ASRATALLMVVLPPGVLIFF 240
>gi|315231662|ref|YP_004072098.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
gi|315184690|gb|ADT84875.1| hypothetical protein TERMP_01900 [Thermococcus barophilus MP]
Length = 353
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 9/256 (3%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ R ++++ + + + L A R + +
Sbjct: 68 REKELQKPFSERIAEAVLKYFSGPVRSLTKSLKGLEYDLYRANIRMSKDKY------VAL 121
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I I+ I+ F LL P + V +L GF + + + R + ++RA
Sbjct: 122 MIGVSIISSIFTFLVGVLLMLPVDVSVLLALLGFIGGFLYMRNYPRIVWKHRVAEVERAM 181
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P L L + +G+ I +A+ VA +SEE L I ++ + + A F
Sbjct: 182 PYVLRHLASLLSAGVGIAEAILSVAN---SDYGVISEEFELIIRDMRGGASFEEALTRFE 238
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V + ++++ ++G ++ L L + E M + + V M
Sbjct: 239 ERMASENVSRVVKQMLRAVKFGGNLSGILYKLAEDFSFEYRMRLVEYVQKVNGLAFVYMF 298
Query: 304 IFFLPVLILVIIGPAI 319
I + +LV+ A
Sbjct: 299 ISVVMPTMLVVAVLAA 314
>gi|148272482|ref|YP_001222043.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830412|emb|CAN01347.1| conserved membrane protein, putative pilus assembly protein
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 316
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 107/313 (34%), Gaps = 11/313 (3%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKS--VAVEREILRKQQITSLQKDSASSRLRTR 75
+ + +P L R+ + V R +T++ L
Sbjct: 11 LGLVAGVGLWTMMGAVPRFRRARLLDRVAPHVLDVSEGARRHLALTTVHPLPVLGTLGAP 70
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE--YSLNILLVVRLVVPIIFLILGII 133
LR + ++ + E I L +G + + LV ++ +++ +
Sbjct: 71 AVIPLRRGLARV----LGGTERIERLLGQSGSPEDVERHRSRQLVGLVLGAAAGIVIAAL 126
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
P V + G A + ++R + I+ P L+ L +
Sbjct: 127 LGGAAVVAGGLPQAQLVAVPFVAAVAGLVACDTALERRAKRRIARIQAELPTVLEFLALS 186
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G + ALRRVA S L+ E+ +A++ AF++ R M V
Sbjct: 187 LAAGEGLLDALRRVARV---GSGELAMELGRVVADVGTGIPVTRAFDDLARRLAMPAVSR 243
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L S GT + + LR + R E + A + VP++ LP+ I+
Sbjct: 244 LVDQLAGSLERGTPLAEVLRAQAQDAREVAKRELLESAGRKEVGMLVPLVFLILPLTIVF 303
Query: 314 IIGPAILSIIDTM 326
+ P I + +
Sbjct: 304 ALFPGIFVLQLGL 316
>gi|241667100|ref|YP_002985184.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862557|gb|ACS60222.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 300
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/310 (15%), Positives = 117/310 (37%), Gaps = 16/310 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + +F+ I A + L I ++ +
Sbjct: 4 IPLAPIAIVFAGITAALFVWWIGDML----------GSIQVVRRSAGGDGPPPNIVDSIG 53
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + KL G + + ++ + G + +
Sbjct: 54 MRTPVEFVLTHFETLLADYGAQLEQKLIYGGRPFGGVTGR---EYIALLVVLSLFGFVVL 110
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + A +++G + V + Q R+ I R +P LDL+++ +
Sbjct: 111 GLLFGIASGSVIGGLVAGLILGLIPAIYFWVVADDKAQDRKERISREFPYFLDLVVMTQQ 170
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ ++ ++LR AE G +SEE+ T+ +++ A + R + V
Sbjct: 171 AQATLPESLRLYAEAAPGT--VMSEEIEQTLKDVALGTGMIEALQRLERRMTAEEVIRVI 228
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A+IQ + G++ + LR + R R +A++ + L K+ +P ++ + ++L+++
Sbjct: 229 RAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVMPAMM-IVVSILLLVL 287
Query: 316 GPAILSIIDT 325
PAI+ ++ +
Sbjct: 288 APAIVEMMSS 297
>gi|110626527|gb|ABG79011.1| TadC [Yersinia ruckeri]
Length = 277
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/203 (20%), Positives = 97/203 (47%), Gaps = 1/203 (0%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+++ FLIL I + ++ + + +I I P++ + L++K++ +
Sbjct: 71 MLITACFLILSIWVLSISFISIDIYEKYTLHILIFIATASIIIPNLIKNMLLRKKKKLLT 130
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
A P +D++ C+++G++I+ AL A++ + LS + + + + +
Sbjct: 131 EAIPLFIDMVAACIQAGMTIESALTHTAKNFESINRDLSMLFNKIMKKSEI-IGLEKSIK 189
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++ L S +G+++ + L L +E + +L+ AE+ + L KLT+
Sbjct: 190 EVSIVAPSTEIKMFCSTLQYSLSFGSTVYEQLNTLSAEIKKMQLLIAEEILSKLSTKLTL 249
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
P+ +F + I++I+ P+IL I
Sbjct: 250 PLFLFMVIPFIVLILSPSILGFI 272
>gi|238793625|ref|ZP_04637248.1| Type II secretion system protein F domain protein [Yersinia
intermedia ATCC 29909]
gi|238727040|gb|EEQ18571.1| Type II secretion system protein F domain protein [Yersinia
intermedia ATCC 29909]
Length = 293
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 82/200 (41%), Gaps = 4/200 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + + + ++++ ++ F I + + KR +P+ L +
Sbjct: 69 IAVPIGYAICIYIINKTWFGINILVILPFILFSIIFFQIRFPRKNNHTIFKRDFPEVLLM 128
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + SG SI+Q L R +++GG PL +E+ L L+ + + F + Y R
Sbjct: 129 INMAASSGTSINQVLERCGKEVGG---PLGDELSLICRRLNVGESPETVFYDAYQRFHYP 185
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ + + G + + L + E +K + +++V I+ +P
Sbjct: 186 EFYFLITIILLNLQQGGQLRELTSRLSQVITKNKTSEQKKAVMTAQTRMSV-NILSIIPF 244
Query: 310 LILVIIGPAILSIIDTMKDH 329
+ + + + I++M +H
Sbjct: 245 VFSLFLYFMDPTAIESMWNH 264
>gi|50119738|ref|YP_048905.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
gi|49610264|emb|CAG73707.1| putative type IV pilus protein [Pectobacterium atrosepticum
SCRI1043]
Length = 326
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 97/296 (32%), Gaps = 20/296 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ +F + +++ + ++ + + + S ++ S LR
Sbjct: 8 LITLLVFGSVLMLLLAVNAWRKSRQQRMQREQRWQQILNEVSPSAAAVASDSILRDEIKT 67
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L I A ++ + L + + +I
Sbjct: 68 PLMGV------------PVIGRW--MAILWAQMTFIGWKKNLLQRSLSLGAVSLILGMVL 113
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ P + + +L+ + + +QK +++ + P+A+D + +G+
Sbjct: 114 GQRTLLPLTMGLIFTLLLFVS---IGMMLFRSTLQKHLKALRESLPEAIDAITRSCRAGV 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ VAE + G PL+ E L + + R M R L
Sbjct: 171 PVANTFSIVAEHLAG---PLANEFKTIDHWLKLGIPLRQVIQASATRVPMAEYRFFVVIL 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
I + G +G++L L + R R ++ + ++ + + + ++ P + +
Sbjct: 228 IINQEAGGRLGETLERLSATLRDRRELQLKVQSKTSEARASAKIVAMLFPGCLAYL 283
>gi|296130402|ref|YP_003637652.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296022217|gb|ADG75453.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 299
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/307 (19%), Positives = 121/307 (39%), Gaps = 19/307 (6%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ A + + + + + + + +LR +Q + S RL R
Sbjct: 1 MIGLIAGLVAAASVVLFLVGWRAMRADALDGLAVEDLALLRDEQRRRAEGQSPLERLAAR 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+R + +I ++ AG +++ LL + +
Sbjct: 61 QVPWIRRRL------GPRRIASIQRRIDEAGRPDGMTVDGLLTR----------IAWWCL 104
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+L V +L + P +S ++R+ + R PD LD+L + V
Sbjct: 105 LCLPLILVLLLIGAVPLALLTLVLPVIMPLGRVSGAQRRRRERMDRDLPDFLDVLAVTVM 164
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G++ AL RV++ G PLSEE+ LT+ +++ + + AF++ R+ + V
Sbjct: 165 AGVNFRAALARVSQHFEG---PLSEEIDLTLHQIANGASVRQAFQDLRRRSASESVGQFV 221
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
AL+QS G + +SL+ + + R + AA P++T+ + +P ++ I
Sbjct: 222 SALLQSQELGAPLAESLQRIAEDMRKASGQRQRQAAAKASPRVTLVTSMVLVPGALVFIF 281
Query: 316 GPAILSI 322
L +
Sbjct: 282 VGMWLGL 288
>gi|220922783|ref|YP_002498085.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
gi|219947390|gb|ACL57782.1| type II secretion system protein [Methylobacterium nodulans ORS
2060]
Length = 322
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 31/288 (10%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
KR +++A R + + Q + + +K+L K ++
Sbjct: 34 RAAKRQQAIAGRRPVAERIQAVNR-------------RDQVAKSLKELENKEKKARPSLD 80
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+L +G F I + + +
Sbjct: 81 LRLTQSGLSITKPQ-------------FYAFSGIAAGLSAVTMLLLSGSLLLCLATAFVA 127
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P ++ L ++R + P+A+D+++ ++SG+ I LR +A + P+
Sbjct: 128 GLGLPQWLLAYLRKRRMARFVLELPNAMDVIVRGIKSGLPIGDCLRIIAREAPD---PVK 184
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + + A Y R + + + G ++ ++L L
Sbjct: 185 TEFRAIVESQAIGLPLPEAAAKLYERMPIPEANFFAIVIGIQSKSGGNLSEALGNLSRVL 244
Query: 280 RSERLMEAEKKAASLG--PKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
R R M + A S+ + + F ++ + P +S++ T
Sbjct: 245 RDRRRMADKVSAMSMEARASAAIIASLPFAVAILCYLSSPDYISLLWT 292
>gi|18977365|ref|NP_578722.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
gi|18893046|gb|AAL81117.1| hypothetical protein PF0993 [Pyrococcus furiosus DSM 3638]
Length = 355
Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 99/254 (38%), Gaps = 10/254 (3%)
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+K L R + + ++K + + L A +
Sbjct: 69 REKTLRQISLSERIADGVLKYLKGPVSSLSSSIKGLDIDLYRANINMSRERY------VA 122
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + IL I+ F + +L P + + +L GF + + ++R + +++A
Sbjct: 123 LMLGVAILVGIFSFAFSLILYLPIDISILVSLLGFIGGFWYMRYYPRVVWRRRVAEVEKA 182
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L + + +GI I +A VA+ +SEE L + ++ + + A F
Sbjct: 183 LPYVLRHIASLLSAGIGIAEAFVSVAK---ADYGVISEEFYLIVQDMHKGASFEDALSKF 239
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + V T+ ++++ ++G ++ D L + E E ++ + + V M
Sbjct: 240 EMKMASENVTRVTKQILRAIKFGGNLADILYKMADEFAFEYRLKLMEYVQKINGLSFVYM 299
Query: 303 IIF-FLPVLILVII 315
+ +P L +V+I
Sbjct: 300 FLSVIMPTLFIVVI 313
>gi|126725974|ref|ZP_01741816.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2150]
gi|126705178|gb|EBA04269.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2150]
Length = 323
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 102/303 (33%), Gaps = 29/303 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E + VS+ L+ + + G S+ + + +L
Sbjct: 7 ETLIYAAIFVSVLFLVEGIYLMVFGKS------ISLNNRINRRLDMMDKGVARQEVLEQL 60
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + L + + I + I K + A + +I +L +
Sbjct: 61 RKEMGQHLSS-------RKIPLYSIIAKKAQIANI---------AFKPQQLVMIMGVLSV 104
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ F F +R+ L+G W++ +KR ++ PDA++L++
Sbjct: 105 VVYFSMTIGTGASFPIRLIVSPLMGMGAVY---FWVNGKAKKRLGMMEEQLPDAIELMVR 161
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++ G A+ VA P+ E + E ++ + + R M +R
Sbjct: 162 SLKVGHPFSSAIAAVA---AESPDPIGTEFGVIADEAAYGGEITDSLQEMAERLDMQDLR 218
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + G ++ + L L S RS + + A + K + + P+L L
Sbjct: 219 FLAVVVGIQAKSGGNLAEILEGLASVIRSRFRLFRKVAAITAEAKFSG-FFLSAFPILAL 277
Query: 313 VII 315
+ +
Sbjct: 278 IGM 280
>gi|319791196|ref|YP_004152836.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315593659|gb|ADU34725.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 80/192 (41%), Gaps = 4/192 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ G ++ + + + ++ V + P+ W + +KR+ I+ P
Sbjct: 57 AVAFASGHAFLVALCGAVGWLISGNLIGGVVAAVVLYLLPARWFAWQRKKRRQQIESELP 116
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL + + +G ++ A++ + + Q PL +E L + E + A +
Sbjct: 117 DALLFIASALRAGSALSVAIQVL---VRDQVGPLGQEFGLVLKEQRLGVSFDDAIQKMSQ 173
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + AL S G ++ + L+VL R + ++E KA + ++ +++
Sbjct: 174 RLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIKALTAQGRIQG-LVM 232
Query: 305 FFLPVLILVIIG 316
P+L++ ++
Sbjct: 233 TLFPLLLMGVLY 244
>gi|332534353|ref|ZP_08410194.1| type II secretion system protein [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036172|gb|EGI72646.1| type II secretion system protein [Pseudoalteromonas haloplanktis
ANT/505]
Length = 271
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/229 (19%), Positives = 100/229 (43%), Gaps = 10/229 (4%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+LR AG + L L ++ + + + + +L+ +
Sbjct: 47 KRQLRQAGIQINKILISLYCFKVAATFSAFTVIELTGYELSES----------IKLLLCF 96
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
V F AP W +R++ I + L +LL+ + +G S++++ + Q PL
Sbjct: 97 VCFFAPECWFLLRKNQRKTVINNSLEFFLRVLLVYMRAGFSLERSFALAVDHGLSQKHPL 156
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+E+ L + ELS +R+ AF + + RT + ++ T ++ + GT + ++ +
Sbjct: 157 YKELKLFLFELSAGKDREFAFNSLFERTGVLGIKKLTNLMLIGSKLGTPLIQAVEAQLEG 216
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + KK T P+I+ P+ ++++ PA L +++ +K
Sbjct: 217 LALKKNILLAKKVNKKAMHTTFPIILICFPMFLVLVFFPAALQVMNVLK 265
>gi|258621454|ref|ZP_05716488.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
gi|258586842|gb|EEW11557.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
Length = 232
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 73/181 (40%), Gaps = 5/181 (2%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
F + G V + ++ + R S + PDALD++ +++G + QA
Sbjct: 23 TFGAGLVLSFSWGVVVWFVLQFFLQKRIADRLSRFEEQLPDALDIIRRMLQAGQPVTQAF 82
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V +++ P+ E T L++ + ++A RT + A++
Sbjct: 83 NEVGKEMA---APIGLEFKNTFNLLNYGYDMRLAIMQMAERTPTVSMLAFASAVMLQKET 139
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSI 322
G ++ ++L + R + + K S +L+ +++ VL + + I P ++
Sbjct: 140 GGNLSENLEKVGKVLRQRFKLTRKIKTLSAESRLSAWILVLSPFVLFIGLMFINPDYVTP 199
Query: 323 I 323
+
Sbjct: 200 L 200
>gi|209546004|ref|YP_002277894.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538861|gb|ACI58794.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 300
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 118/310 (38%), Gaps = 16/310 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + +F+ I A + L I ++ +
Sbjct: 4 IPLAPIAVVFAGITAALFVWWIGDLL----------GSIQVVRRSRGGDGPPPNVVDSIG 53
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + KL G + + ++ + G I +
Sbjct: 54 MRTPVEFVLLHFEPWLADYGAQLEQKLIYGGRPFGGVTGR---EYIALLVVLSLFGFILL 110
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + A +++G + V + +Q R+ I R +P LDL+++ +
Sbjct: 111 GVLFGIASGSIIGGLVAGLILGLIPAIYFWVVADDKMQDRKERISREFPYFLDLVVMTQQ 170
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ ++ ++LR AE G +SEE+ T+ +++ A + R + V
Sbjct: 171 AQATLPESLRLYAEAAPGT--VMSEEIDQTLKDVALGTGMVEALQRLERRMTAEEVIRVI 228
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A+IQ + G++ + LR + R R +A++ + L K+ +P ++ + ++L+++
Sbjct: 229 RAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVMPAMM-IVVSILLLVL 287
Query: 316 GPAILSIIDT 325
PAI+ ++ +
Sbjct: 288 APAIVEMMSS 297
>gi|119962927|ref|YP_948622.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119949786|gb|ABM08697.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 316
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 101/312 (32%), Gaps = 35/312 (11%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ + I A+ I +++ R Q + +++ L
Sbjct: 7 PLLLIGGVILGIAALAIGLFLIPRSRNSAIALSRRRPNAGTQDSVLTRMTNSAVALVDGS 66
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
L AG R +++ + ++G I
Sbjct: 67 VS-------------ASRASGTRLLLEQAGSRMR--PADYVLLVICATFTGAVVGFILGG 111
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ IL G + + +S + +R++ + D L +L + +
Sbjct: 112 -------------LLVAILFGILVPIGARMVLSVMTSRRRAQFEAQLGDTLQMLSGSMRA 158
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+ +A+ VA + P EE + E+ + + A + NR + ATQ
Sbjct: 159 GHSLLRAVDAVALEAQS---PTKEEFARIVGEVRLGRDLRDALLDAANRLHSEDFLWATQ 215
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A+ G + + L + R ++ + +A S +L+ ++ LP + + +
Sbjct: 216 AIEIHREVGGDLAEVLDHVAETIRERSQIKGQVRALSAEGRLSA-YVLIALPTGMFLYLS 274
Query: 317 PA---ILSIIDT 325
A + + T
Sbjct: 275 LANGTYIQPLFT 286
>gi|166033071|ref|ZP_02235900.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
27755]
gi|166027428|gb|EDR46185.1| hypothetical protein DORFOR_02793 [Dorea formicigenerans ATCC
27755]
Length = 397
Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ ++ + + + A ++I + F Q RQ + +P+ + L + + +G
Sbjct: 206 FYTVMNWRGAVIMAAAVVISVLFFALDKQNEIKEKQARQKQMCLDYPEVISKLTLLLGAG 265
Query: 198 ISIDQALRRVAEDIGG-----QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++ +A ++ D + EEM T ++ +E F R
Sbjct: 266 MTVRKAWIKIVNDYDSRIKQQGKRAVYEEMKYTCRQMDGGVPEAECYEKFGRRCGTQEYM 325
Query: 253 NATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L Q+ R GT + D LR+ ++ ER A + G KL +PM + VL+
Sbjct: 326 RFGALLSQNLRKGTKGLNDLLRLEAIQSFEERKARARRLGEEAGTKLLLPMFLMLAEVLV 385
Query: 312 LVIIGPAILSI 322
+V + PA ++
Sbjct: 386 IV-VVPAFFTV 395
>gi|283769335|ref|ZP_06342234.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
gi|283103992|gb|EFC05376.1| type II secretion system F domain protein [Bulleidia extructa
W1219]
Length = 294
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 92/232 (39%), Gaps = 18/232 (7%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
EN+ L G + +++ +I ++ I G + +
Sbjct: 49 SENLRRYLLTTGLPLK--PEEFILLWGATALILPLITFILNLGLSTM------------V 94
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L VG + +KR + + P+AL ++ C+ SG + AL RV+ED+
Sbjct: 95 LFFIVGLLLFPLMAEIAKKKRLALFNKQLPEALVIIGNCLRSGFTFRHALARVSEDLPN- 153
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
P+SEE+ I E+++ + + +RT + A+ R G ++ + +
Sbjct: 154 --PISEELKRVIREVNYGRKLEESLGELASRTNSAELEMINSAVTIQQRSGGNLAEIVEK 211
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + + + + + + M+I LPV +L+I+ + +++
Sbjct: 212 VTETINDRINIRNQIRVLTTQGRYSG-MLIGLLPVFLLIILTWISPNYMNSF 262
>gi|116255775|ref|YP_771608.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115260423|emb|CAK03527.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 301
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 116/310 (37%), Gaps = 16/310 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + F+ I A + L I ++ +
Sbjct: 5 IPLAPIAITFAGITAALFVWWIGDML----------GSIQVVRRSAGGDGPPPNIVDSIG 54
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + + KL G + + ++ + G I +
Sbjct: 55 MRTPVEFVLTHFEPLLADYGAQLEQKLIYGGRPFGGVTGR---EYIALLVVLSLFGFIVL 111
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + A +++G + V + Q R+ I R +P LDL+++ +
Sbjct: 112 GLLFGIASGSVIGGLVAGLILGLIPAIYFWVVADDKAQDRKERISREFPYFLDLVVMTQQ 171
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ ++ ++LR AE G +SEE+ T+ +++ A + R + V
Sbjct: 172 AQATLPESLRLYAEAAPGT--VMSEEIEQTLKDVALGTGMIEALQRLERRMTAEEVIRVI 229
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A+IQ + G++ + LR + R R +A++ + L K+ +P ++ + ++L+++
Sbjct: 230 RAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVMPAMM-IVVSILLLVL 288
Query: 316 GPAILSIIDT 325
PAI+ ++ +
Sbjct: 289 APAIVEMMSS 298
>gi|261856882|ref|YP_003264165.1| type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
gi|261837351|gb|ACX97118.1| Type II secretion system F domain protein [Halothiobacillus
neapolitanus c2]
Length = 284
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 4/164 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + + L Q+R I++ PD L ++ + +G+ AL +A PL++E
Sbjct: 93 FPKKFYAWLKQRRIDKIQQQLPDGLMMVSGSMRAGLGFTAALESLAR---DTDPPLAQEF 149
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L + E + A +F +R + V A+ S G ++ +SL L S R
Sbjct: 150 ALVLREQRMGVKLEDALLHFNDRVPVQDVTLFVSAVNISREVGGNLAESLTSLASTLRRR 209
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ME + K+ + +L +++ +PV +L + A + +
Sbjct: 210 LIMEGKVKSLTAQGRLQG-IVMALMPVGLLTFLTLAYPDTMHDL 252
>gi|328952511|ref|YP_004369845.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452835|gb|AEB08664.1| Type II secretion system F domain protein [Desulfobacca acetoxidans
DSM 11109]
Length = 317
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/315 (17%), Positives = 109/315 (34%), Gaps = 28/315 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ A +F ++ +V+ E K+ + + R + ++ + + R TR
Sbjct: 1 MTALIAGLVFLTVFGLVLAFYFGYEDLKQARKDQLIRSLTVGRRRGDRMPEEEAVRQETR 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
L V L+ ++ AG SL +V + +F++L ++
Sbjct: 61 FLTMLLTRVDLSGLETLIQS-------AWAGL----SLERFFLVSVCCGFVFMLLPLLLF 109
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L G C P + +R+ + PDA+D ++ ++
Sbjct: 110 GN------------AVLSFLAFAAGLCLPLGVLMIRRARREEKLVAQLPDAIDTIVRSLK 157
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNA 254
G S+D A VA G P+ + E++ + +NF R + VR
Sbjct: 158 VGQSVDAATLEVAR---GFPPPIGADFRAINEEMAMGLPFETVIKNFQRRYPRLPDVRIL 214
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ G + D L L S R+ + +A++ + T I+ LP+ +
Sbjct: 215 CATFVIQRETGGKLTDILAGLASTIRARLHFQRRVRASTAEGRTTA-FILGILPLGFAAV 273
Query: 315 IGPAILSIIDTMKDH 329
+ +DH
Sbjct: 274 TWLLRPEYMRVFRDH 288
>gi|77456872|ref|YP_346377.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
gi|77380875|gb|ABA72388.1| putative type II secretion system protein [Pseudomonas fluorescens
Pf0-1]
Length = 296
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 99/243 (40%), Gaps = 4/243 (1%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L +A+ +D L G+RS ++ ++ P++ L + ++ +E
Sbjct: 57 SALGQRAVKLDNETQTLLNRLGWRSARQRSLFAACQIGTPLLLLSVAVLLQGVLFPHIER 116
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ A + +G+ P ++ +RQ + + LL I E+G++++QAL
Sbjct: 117 QW----IAPLFALGIGYLLPKRLLAMAAGRRQKQLATEISTFIPLLRILFEAGMAVEQAL 172
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
R ++ + L++E+ L +A + +D + L Q +
Sbjct: 173 RVLSHEGQTLLPVLTQELRLVLARVDSGLELGEELNKATRLLAVDEFTDTCVILQQLLQQ 232
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G SL L RL ++ + + K++V M++F P L++V+ GP ++
Sbjct: 233 GGGAMKSLLALKQLLDDRRLTRLQEYISKMSAKMSVVMMMFLFPALLIVLAGPGFSALAR 292
Query: 325 TMK 327
+
Sbjct: 293 ALG 295
>gi|113867006|ref|YP_725495.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113525782|emb|CAJ92127.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 282
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 7/196 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ LL + V +L V P + + +KR +I+ PDAL ++
Sbjct: 61 VVAVFALPLLTWLVSQNVFFAMLSIPVSLLLPRALVKKMQRKRLMAIEDQMPDALLMMSS 120
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G S AL V + P+S+E L + E+ + A N R +
Sbjct: 121 ALRAGASFPMALESV---VAESRPPISQEFDLLMREVRLGVDLMDALRNMEKRIPVPDFL 177
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
T A+ S G ++ ++L + R + ME + +A + K+ +++ LP+ ++
Sbjct: 178 MVTAAITISREVGGNLAETLESVARTLREKHQMEGKIRALTAQGKMQG-LVMTGLPLFLI 236
Query: 313 VIIG---PAILSIIDT 325
V++ P ++ + +
Sbjct: 237 VVLNHMEPVAMAPLFS 252
>gi|59713407|ref|YP_206182.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
gi|59481655|gb|AAW87294.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
Length = 307
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 12/223 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L DE + KL + ++ L +++ + FL++ I+I L P +
Sbjct: 53 LSDETLKQKLLRFFNNTYQQVDSLANIKIPLYCAFLVVLGIYI-NKSFLQANPLMIVAIT 111
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
I G + L ++ ++ + ++PDAL+++ V +G I QA+ V +
Sbjct: 112 EISGLIFG-------VMWLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLD 164
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G+ + +E +L + F R + L S + G + + +
Sbjct: 165 GK---VGKEFKRMGEQLQLGESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVM 221
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L R +E +K A + + + I+ +P + L ++
Sbjct: 222 KRLNRLMFGARAIEKKKLALTSEARASAK-IVAAIPFIFLFML 263
>gi|14590540|ref|NP_142608.1| hypothetical protein PH0653 [Pyrococcus horikoshii OT3]
gi|3257061|dbj|BAA29744.1| 358aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 358
Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 85/196 (43%), Gaps = 4/196 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + + I+ I F ++ P + + +L GF + ++ ++R ++
Sbjct: 124 VALMLAVGIISAILTFIVGLIIALPIDMSMLLGVLGFIFGFIYMRFYPKSVWKRRVEEVE 183
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+A P L + + +GI + +A+ V++ +SEE + + E+ + + A
Sbjct: 184 KALPYVLRHMASLLNAGIGLAEAMVSVSK---ADYGVVSEEFAMVVQEMHKGSSFEDALT 240
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F + + D V + ++++ ++G ++ D L + E E ++ + V
Sbjct: 241 KFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISFV 300
Query: 301 PMIIF-FLPVLILVII 315
M + +P L++V+I
Sbjct: 301 YMFMTVVMPTLLIVVI 316
>gi|291541801|emb|CBL14911.1| Bacterial type II secretion system protein F domain [Ruminococcus
bromii L2-63]
Length = 291
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 76/195 (38%), Gaps = 5/195 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I +++ + L + + + + + KR + + + +
Sbjct: 99 IAFTLFVLSFILYGLASDVLALIVGFVFAGLAYYYFGTVTKKRILKRSDELLHDFSEVVS 158
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L + +G+ + +A + VA + EM T+ E++ + A NF +R +
Sbjct: 159 KLALLTNAGMILREAWQEVAFAGTST---IYTEMQTTVNEMNNGVSEIDAMFNFGSRCII 215
Query: 249 DCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ T +IQ G S + L+ E + ++ KL +P+ + F+
Sbjct: 216 PEIKKFTSTIIQGMTKGNSELTAMLQEQSKEVWQLKKQLVRREGEKAASKLLIPICVMFV 275
Query: 308 PVLILVIIGPAILSI 322
+LI++I+ P ++
Sbjct: 276 GILIMIIV-PIFTNL 289
>gi|319782177|ref|YP_004141653.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168065|gb|ADV11603.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 322
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 47/306 (15%), Positives = 106/306 (34%), Gaps = 31/306 (10%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
A + + A S+ A+ + G R L++ + +
Sbjct: 5 QALLYFIYMLAAASVILAGEALYLSFAG------RRSRSMAVNRRLKRLAGEVPAEQTLQ 58
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
LR R +F+ + +G P+ F
Sbjct: 59 GLLRERGLTDSGDFL--------FGMVWLNRLYTQSGITG-------------NPLTFAA 97
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
++ LL + + ++++ +G P + + KR + PDALD+
Sbjct: 98 TFLLAGLAMALLLVFFNFSALASLLIFLVIGLVLPLLVLRRARNKRIRKFAKQLPDALDM 157
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + +G A+ VA ++ PL E + E++F + + A R +
Sbjct: 158 IVRSLRAGHPASVAIGLVAREMPD---PLGTEFGIVSDEITFGLSIEQAVRKLSQRVGFE 214
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ + +L + G ++ + L L S R + + + +A S +++ II P+
Sbjct: 215 GLQLLSVSLSIQSKTGGNLTEILANLSSVMRERQKLRMKIRALSAEGRVSA-WIISLFPI 273
Query: 310 LILVII 315
++ +
Sbjct: 274 VMFFTL 279
>gi|163814842|ref|ZP_02206230.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
gi|158449781|gb|EDP26776.1| hypothetical protein COPEUT_00992 [Coprococcus eutactus ATCC 27759]
Length = 434
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 75/182 (41%), Gaps = 4/182 (2%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ I+ + +S ++R+ + +P+ +D L++ + +G++I
Sbjct: 255 AGGSGAIPVIFLGIISAVCIWMGARAKLSKQEKERKQQLMIDYPELVDRLILYLGAGVTI 314
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ R+ ++ L +E+ T+ E+ A+ N +R + L Q
Sbjct: 315 RGSFVRMVQN--DDESALMKELRYTLNEIQAGIPEGEAYYNMGHRINIPVYMKLMSMLSQ 372
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ GT I + R A KK G +L PMI+ L V++++++ PA+
Sbjct: 373 NVSKGTKDIMIMMAGEEQAALQTRKELARKKGEEAGTRLLFPMIV-LLGVVMVIVVLPAV 431
Query: 320 LS 321
+S
Sbjct: 432 MS 433
>gi|332158910|ref|YP_004424189.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
gi|331034373|gb|AEC52185.1| hypothetical protein PNA2_1270 [Pyrococcus sp. NA2]
Length = 355
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 97/253 (38%), Gaps = 10/253 (3%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
++ + L R ++ + + + + L A + +
Sbjct: 70 REKTIQKPLSDRIAEVFLRYFRGPVESLSGSIKGLEEDLYRANILMPKEKY------VAL 123
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ I+ I F + E + + I+ +GF + ++ ++R ++R+
Sbjct: 124 MLAVGIIAGIMGFFLGIITEMSMDMNLALGIVGFLLGFVYMRFYPKSVWRRRVEEVERSL 183
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P L + + +GI + + + VA+ +SEE + I E+ + + A F
Sbjct: 184 PYVLRHMASLLSAGIGLAETMVSVAK---SDYGVISEEFRMVIQEMHKGSSFEDALTKFE 240
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + D V + ++++ ++G ++ D L + E E ++ + V M
Sbjct: 241 EKMKSDMVSRVVKQILRALKFGGNLSDILYKMADEFSFEYRIKLMDYVQKINGISFVYMF 300
Query: 304 IF-FLPVLILVII 315
+ +P L++V+I
Sbjct: 301 MTVVMPTLLIVVI 313
>gi|170692560|ref|ZP_02883722.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170142216|gb|EDT10382.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 327
Score = 86.4 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/319 (14%), Positives = 106/319 (33%), Gaps = 28/319 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDS 67
+ A A +++ I + G +R+ +R +
Sbjct: 1 MNPIFYAFAFLLFIAVVLGIEGIYQWWNSHHGPAARRLDQ------RIRALSAGAHANGE 54
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S L+ R + + + + + + +G S ++ L +V
Sbjct: 55 RLSILKERMLSNSASVHALM--MRVPRIHLLDRIILQSG--SSLTVGRLATHSVVA---- 106
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ P Q+ +L P++ + +KR ++R P+A
Sbjct: 107 ------LVLVLLAANFSPVQVPTLVTVLAAVAALAFPTLRMLRARRKRLRVLERQLPEAA 160
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ + +G S AL + + P++ E + E+++ A N R
Sbjct: 161 DMISRALRAGHSFSSALGMLGSEFAE---PMAGEFRIVFDEINYGVTLNEALLNLATRVP 217
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R A++ G ++ + L + S R+ + + + S +L+ I+ L
Sbjct: 218 VGDLRYFVIAVLIQRETGGNLAEILDSIASLVRARLQLFDKVRVLSAEGRLSG-WILALL 276
Query: 308 PVLILVII---GPAILSII 323
P + P S++
Sbjct: 277 PFASAGAMQVVNPTFFSVL 295
>gi|156744076|ref|YP_001434205.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
gi|156235404|gb|ABU60187.1| type II secretion system protein [Roseiflexus castenholzii DSM
13941]
Length = 323
Score = 86.4 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/318 (16%), Positives = 102/318 (32%), Gaps = 28/318 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D+ + + AV+ L R V
Sbjct: 1 MDSPVSLDLVLPIGAALLAGLAVLTLIFALHSLAARDTGVDSRIAAYLGGGRAERSSTLN 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++ R ++ ++ I + L AA ++ L++R+ VP
Sbjct: 61 DQQIAERLNEVIKR---------QSFASRIEHDLAAASLP--LTVPEYLLMRIAVP---- 105
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
LL + +G A S W+ Q+R+ + P+ LD
Sbjct: 106 --------LIATLLALLIWRQALIAPAALIIGHLALSFWMRIRRQRRKQAFSDQLPETLD 157
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + G S+ Q+L A G P+ E+ E+ + A +N R +
Sbjct: 158 LITASMRGGFSLVQSL---ANVAGDVQEPMRTELRRVFQEVQLGLSITQALDNLVQRMES 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFF 306
+ A+ R G ++G L + + R + E + + +++ +I + F
Sbjct: 215 TDLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISSYVIGALPF 274
Query: 307 LPVLILVIIGPAILSIID 324
LI+ I P + +
Sbjct: 275 ALALIIFTINPTYMMRLF 292
>gi|288956973|ref|YP_003447314.1| type II secretion system [Azospirillum sp. B510]
gi|288909281|dbj|BAI70770.1| type II secretion system [Azospirillum sp. B510]
Length = 319
Score = 86.4 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 104/319 (32%), Gaps = 33/319 (10%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSLQKDSA 68
E+ A+ + F LI V++ +L G L +R ++V+ L ++
Sbjct: 1 MTPEILAALAPGLGAFLLILGVILLALVLRGALTERRRAVSNRLTALSAPVSVVADGETL 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + + ++ +L ++
Sbjct: 61 LSVD-----------------EGAGERDGLMRRLE----------ALIEPAGGWAAARPA 93
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
LG + F L A+ + VG A + L +R PDA+D
Sbjct: 94 ALGAVAAFAVALFLAGRALSLPPALAIAVLVGLGAGRQILGMLTHRRTIRFLDRLPDAID 153
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++ +G+ + +A+ P+ E ++S + + A R ++
Sbjct: 154 LVVRASRAGVPVSEAIIAAGR---ETEEPVRSEFRRVADQVSIGVDLKDALRQSSARVRL 210
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
AL+ G + ++L L R + M + KA + +++ ++
Sbjct: 211 PDFDFFVVALVVQRETGGQLAETLGNLSDILRKRKDMRLKVKALTAEGRMSANIVASLPF 270
Query: 309 V--LILVIIGPAILSIIDT 325
V ++ + P + + T
Sbjct: 271 VSGGLIFAVDPTYVLNLFT 289
>gi|313835699|gb|EFS73413.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928370|gb|EFS92201.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970222|gb|EFT14320.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328908049|gb|EGG27808.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 301
Score = 86.4 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 57/299 (19%), Positives = 123/299 (41%), Gaps = 23/299 (7%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
++ L I V++ +++ V L + + + + V ++ + +S +
Sbjct: 1 MSSLLIGLIPGVVALGAVLLIVRGIYLAASDPSEALDLDEVALLKKAERDRHAGPLESLA 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R +L I ++ AAG +++ +L L +I +
Sbjct: 61 MRFLPVVRGALPTRA----------VSWIQKQVNAAGRPDGMTVDTVLADMLKWAVIVVP 110
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + + Q +L ++ P ++ V++R+ I + P +D+
Sbjct: 111 LAVFVL----------VQGMAFIALLALFIPPVIPLGKLTGDVKRRKEQIDQDLPSFMDV 160
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + V +GI +ALR V+E GG PL++E+ LT+ + + + AF +RT
Sbjct: 161 LAVTVTAGIGFRRALRTVSERYGG---PLADEIQLTLQHVDNGASMRQAFTALRDRTGSA 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V A +QS+ G + D+L + ++ R A ++A+ + P++++ +P
Sbjct: 218 AVDEFVSAYVQSEELGAPLVDTLNHIAADMRRSSAQAALQRASRIEPRVSLVTTTVMVP 276
>gi|240102254|ref|YP_002958562.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
gi|239909807|gb|ACS32698.1| Bacterial type II secretion system protein F [Thermococcus
gammatolerans EJ3]
Length = 358
Score = 86.0 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/284 (14%), Positives = 111/284 (39%), Gaps = 8/284 (2%)
Query: 37 GSGELEKRMKSVAV---EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
+++R++++ E E ++ + ++ R + + + +
Sbjct: 31 RRKSIQERLRALKEIQKETEESKESERERELEEILEWRRKEITTSFGERLAEAFLRRFKG 90
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVR-LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
E++ ++ + + + + + + II I + + LLE +
Sbjct: 91 PVESLTKSIKGLDYDLYRANIRMSKEKYVALMIITSIFLGAFSLAFGLLLEMDVFTSMML 150
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+L GF + + ++R + +++A P L + + +G+ I +AL VA+
Sbjct: 151 GLLGFIGGFLYMRHYPRMVWRRRVAEVEKALPYVLRHIASLLSAGVGIAEALVSVAK--- 207
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
SEE L + ++ + + A E F + + V + ++++ ++G ++ + L
Sbjct: 208 ADYGVASEEFELIVRDMRAGASFEEALERFEEKMGSENVSRVVKQILRAIKFGGNLAEIL 267
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-LPVLILVII 315
+ + E M+ + + + M + +P + +V I
Sbjct: 268 YKMAEDFAFEYRMKLVEYVQKVNGIAFIYMFMTIVMPTMFIVAI 311
>gi|256397305|ref|YP_003118869.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256363531|gb|ACU77028.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 304
Score = 86.0 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/306 (15%), Positives = 106/306 (34%), Gaps = 8/306 (2%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
++ + + + + + LR+ Q+D A + + + L
Sbjct: 5 VLAGALVGLGLFLLIRALIPGRPDPMAAIARIDALRQHTSLGPQQDQAPPKGLAKLREDL 64
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIWIFGYD 139
+ ++ ++ L + S+ L +L++ + +I G ++ Y
Sbjct: 65 GASMNDFYIRQGWQIRSLRADLA----ILDRSVEQFLAAKLLLAALGIIFGPFVFAAVYV 120
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
L + V +L G V F P + + +++ +R LDL+ + + G
Sbjct: 121 LGLHLTPTIPVWLALLFGGVFFLLPDLEVKGQAAEKRRDFRRVLGAYLDLVAMNLAGGRG 180
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ +AL AE G L ++ A + +D +++ AL
Sbjct: 181 LPEALMAAAEVSDGW--ALRRIRDALTDARVTGISQWNALSQLGDALDVDELKDLGAALA 238
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
G + +SL R L E E A + + V ++ ++ ++ PA+
Sbjct: 239 LVAEDGAKVRESLAARAETMRHRELSEIEGAAGAKSQSMLVAQMLLC-AGFMVFLLYPAM 297
Query: 320 LSIIDT 325
++ +
Sbjct: 298 ARVMGS 303
>gi|323341959|ref|ZP_08082192.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464384|gb|EFY09577.1| flp pilus assembly protein [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 311
Score = 86.0 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 84/221 (38%), Gaps = 18/221 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + L AG + L + L + +++ + + +
Sbjct: 67 EKLKENLLMAGINLR--PDEFLKMWLGLAAFAVVICVAL------------DKGMIVTLF 112
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
P ++I ++R + DAL +L + +G + +QAL +A+D+
Sbjct: 113 AFAAALIGPPMYIKIKRKQRIGKFSQQLGDALLILSNSLRAGFTFEQALASIAKDLPD-- 170
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ E L E+ N + + R + + ++ A+ + G ++ D L +
Sbjct: 171 -PIGPEFLKVCREVELGENIEKSLAAVSTRMESEEMKLMNTAVSIQRQVGGNLADVLDNI 229
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
R ++ KA + ++ +I LPV++LV+I
Sbjct: 230 GEAIRERITIQKNIKALTAQGDVSAKVIAG-LPVVVLVLIS 269
>gi|116671480|ref|YP_832413.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611589|gb|ABK04313.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 310
Score = 86.0 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/271 (19%), Positives = 97/271 (35%), Gaps = 23/271 (8%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
DS TR + + + L N L AG R + +
Sbjct: 30 ALSRRRPYDSDPPSRLTRLANITVGTLDRFLAARNLRLYN-RETLETAGVRLSQA--EFI 86
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V+ + I+ ++G++ +L VG ++L G KR++
Sbjct: 87 VLVMAGAIVGALVGLVIGVPVVSILLVILAPFVGHLVLGFLAG-------------KRRA 133
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ D L LL + +G SI +A+ A P SEEM I E S +
Sbjct: 134 RFDQQLGDTLQLLAGGLRAGHSILRAIDAAA---AESQSPTSEEMRRVITETSLGRDLLA 190
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + R + + QA+ + G ++ + L + R ++ KA + K
Sbjct: 191 SLTDTSERMKNEDFVWIAQAIQINREVGGNLAEVLDQVNETIRERSEIKGHIKALAAEGK 250
Query: 298 LTVPMIIFFLP---VLILVIIGPAILSIIDT 325
+ I+ +P VL+L+ + P + + T
Sbjct: 251 FSA-YILIAMPIGIVLMLMAVNPGYMDAMFT 280
>gi|86360424|ref|YP_472312.1| putative pilus assembly protein [Rhizobium etli CFN 42]
gi|86284526|gb|ABC93585.1| putative pilus assembly protein [Rhizobium etli CFN 42]
Length = 300
Score = 86.0 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 120/310 (38%), Gaps = 16/310 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + + + I A +I L I ++ +
Sbjct: 4 IPLAPIIIVLAGITAALIVWWIGDLL----------GSIQVVRRTAGGDGPPPNIVDSIG 53
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ ++ + KL G + + ++ + G I +
Sbjct: 54 MRTPVEFVLRHFEPLLADFGAQLEKKLIYGGRPFGGVTGR---EYIALLVVLSLFGFILL 110
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ A +++G++ V + +Q R+ I R +P LDL+++ +
Sbjct: 111 GVLFGFASGSVIGGLVAGLILGFIPAIYFWVVADDKMQDRKERISREFPYFLDLVVMTQQ 170
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ ++ ++LR AE G +SEE+ T+ +++ A + R + V
Sbjct: 171 AQATLPESLRLYAEAAPGT--VMSEEIEQTLKDVALGTGMIEALQRLEARMTAEEVVRVI 228
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+A+IQ + G++ + LR + R R +A++ + L K+ +P ++ + ++L+++
Sbjct: 229 RAVIQGEVEGSNRVELLREHARDLRFRRWEKADRASEKLKAKIVMPAMM-IVVSILLLVL 287
Query: 316 GPAILSIIDT 325
PAI+ ++ +
Sbjct: 288 APAIVEMMSS 297
>gi|319788659|ref|YP_004148134.1| type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
gi|317467171|gb|ADV28903.1| Type II secretion system F domain [Pseudoxanthomonas suwonensis
11-1]
Length = 282
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 4/199 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + I LL + + I V AP L ++R I+ PDAL
Sbjct: 56 LFMANILALVVGPLLVWMATGTLLFAIFAAVVIAVAPRRIYVMLRRRRLDRIQEQLPDAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L + +G+ A+ + + PL++E+ L + + A E+F R
Sbjct: 116 QMLASSLRAGVGFSPAMEVLVQ---DGQPPLAQELALVLRQQHMGVRADEALESFSKRVP 172
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ A+ S G ++ ++L L R +ME + KA + KL +++ L
Sbjct: 173 IVDAELFVSAVNISREVGGNLAETLATLAETLRRRLIMEKKVKALTAQGKLQG-IVMALL 231
Query: 308 PVLILVIIGPAILSIIDTM 326
PV ++ + + M
Sbjct: 232 PVFLVGYLSLMYAETMAPM 250
>gi|261820218|ref|YP_003258324.1| type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
gi|261604231|gb|ACX86717.1| Type II secretion system F domain protein [Pectobacterium wasabiae
WPP163]
Length = 326
Score = 85.6 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 20/296 (6%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ +F + +++ + ++ + + + S+ + S LR
Sbjct: 8 LITLLVFCSVLMMLLAVNAWRKSRQQRMQREQRWQQILNEVSPSVAAAESDSILRDEIRT 67
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
L I L A ++ + L + +I
Sbjct: 68 PLMGI------------PVIGRWL--AILWAQMAFIGWKKNLLQRSLSLAAASLILGMIL 113
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ P + + +L+ + +QK +++ + P+A+D + +G+
Sbjct: 114 GQRTLLPLTMGLIFTLLLFVSIGML---MFRSTLQKHLKALRESLPEAIDAITRSCRAGV 170
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ VAE + + PL+ E L + + R M R L
Sbjct: 171 PVANTFSIVAEHL---TGPLANEFKTIDHWLRLGIPLRQVIQASATRVPMAEYRFFVVIL 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
I + G +G++L L + R R ++ + ++ + + + ++ P + +
Sbjct: 228 IINQEAGGRLGETLERLSATLRDRRELQLKVQSKTSEARASAKIVAALFPGCLAYL 283
>gi|319940444|ref|ZP_08014789.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
3_1_45B]
gi|319806070|gb|EFW02819.1| hypothetical protein HMPREF9464_00008 [Sutterella wadsworthensis
3_1_45B]
Length = 326
Score = 85.6 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 3/185 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+LG + + + A + A ++ + + + ++ P+A+
Sbjct: 100 LVLGALSFTAAALVGRMTDYPFLIAFFGGAALFASAAALLYLRAMGEWTEELGKSLPEAI 159
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D + +G+ A A+++ G LSEE+ L + + +R
Sbjct: 160 DSIARICRAGVPAQTAFGLAAQNLRGA---LSEELRTIDRWLRLGVPLKQVLQESAHRVP 216
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ R +I S G + D+L L + R + + +A + + ++ ++ +
Sbjct: 217 LPEYRFFAVIVIISQESGGRLADTLERLAATLRERAELALKVQAKTSEARASIKIVACLV 276
Query: 308 PVLIL 312
P +++
Sbjct: 277 PGVLI 281
>gi|170725111|ref|YP_001759137.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810458|gb|ACA85042.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 283
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 5/210 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
F S N+ + + P +L +I +F ++ +I+ + F P
Sbjct: 37 FTSSAKTNLFDMFLFIEPKQLFMLNMITLFSVPFIVRIFLGSWALGIIISIVLAF-IPRF 95
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L ++R+ PDAL+++ ++SG ++ A+ ++E++ P+ +E L
Sbjct: 96 AYKFLHKRRRRKFVHQLPDALNMIASSMQSGANVSTAIEFMSEEMQ---APIKQEFQLFQ 152
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E A +N Y R D + T + S G ++ + L L S R + ME
Sbjct: 153 REQRLGVEFNTALDNMYKRIPEDEFQLVTAGMQISREVGGNLAEVLFRLSSTLRRKIEME 212
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ A + K+ +++ LP+ I ++
Sbjct: 213 GKIDALTSQGKMQG-IVMTMLPLFIGFVLY 241
>gi|170720030|ref|YP_001747718.1| type II secretion system protein [Pseudomonas putida W619]
gi|169758033|gb|ACA71349.1| type II secretion system protein [Pseudomonas putida W619]
Length = 295
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/304 (17%), Positives = 115/304 (37%), Gaps = 10/304 (3%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
+ L+ AV + + + + + R+ Q +++ L + L
Sbjct: 1 MALLLCAVCLFIAAGLLGLQAARQLRARYLVARRLQGRLAREERLGDWLHWLGNSPLGQR 60
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
++KL D L G+R + ++L +P++ +IL +I
Sbjct: 61 LQKL-------DGETQALLDRVGWRRSRQRALFAAMQLGLPLVAVILTLILQQAALGSDG 113
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + + + P ++ ++RQ I + LL I E+G++++QA
Sbjct: 114 THWLVWPLFALGAS---YLLPKRLLAVAARRRQQRIALEVSLMIPLLRILFETGLAVEQA 170
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
LR ++++ +SEE+ + + E +D + L Q
Sbjct: 171 LRVLSQEGQALLPEISEELRQVLQRVDSGLALGPELEKSARVLAVDEFIDTCVILQQLLV 230
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G+ SL L RL +++ + + K++ M++F P L++V+ GP ++
Sbjct: 231 QGSGAMKSLLALKDLLDDRRLTRMQERVSKMSAKMSAVMMVFLFPALLIVLAGPGFSALT 290
Query: 324 DTMK 327
+
Sbjct: 291 RALG 294
>gi|222111306|ref|YP_002553570.1| type II secretion system protein [Acidovorax ebreus TPSY]
gi|221730750|gb|ACM33570.1| type II secretion system protein [Acidovorax ebreus TPSY]
Length = 279
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 7/180 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V +L F P + L ++R++ + PDAL++L + SG S+ A+ VA
Sbjct: 74 AVPLAVLAAVGIFVLPRMAYGYLKRRREAKLIEQMPDALNMLAGSLRSGASLAIAMDLVA 133
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
P S+E+ L + E + + AFE+F R ++ V A+ S G ++
Sbjct: 134 T---ETPPPFSQELSLVLREQKLGVSLEDAFESFAKRVNLEDVNLLVSAITISKDVGGNL 190
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG---PAILSIIDT 325
+ L L S R++ ME + +A + KL +++ LPV + ++ P ++ + +
Sbjct: 191 SEVLERLASTLRAKAAMEGKIRALTSQGKLQG-IVVGLLPVFLGFVLFQMEPEAMAPLFS 249
>gi|269105135|ref|ZP_06157829.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae CIP 102761]
gi|312621085|ref|YP_003993813.1| flp pilus assembly protein tadb [Photobacterium damselae subsp.
damselae]
gi|268160585|gb|EEZ39084.1| flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae CIP 102761]
gi|311872806|emb|CBX86897.1| Flp pilus assembly protein TadB [Photobacterium damselae subsp.
damselae]
Length = 306
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 12/223 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L DE+ + KL+ A + L V+L++ L+L +I + + E F +
Sbjct: 53 LSDESFIQKLKRASNNTYNQLGDYPAVKLLIYFTLLLLFSFYI-NQNFIRENIFVVAFII 111
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
I+ G IS L ++ + + ++PDAL++L + SG SI A+ V + +
Sbjct: 112 EIVGILWG-------ISWLQKRERKKFEESFPDALNILTSAISSGESIIHAIVFVGKTLD 164
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G + E L L + F R + L + G + D +
Sbjct: 165 GA---VGNEFSLMGERLQLGESPDNVFRKSCMRFPYPSFQFFVITLRANMHRGGQLKDVM 221
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L R +E +K A + +++ I+ +P + L ++
Sbjct: 222 SRLNRIMFDARAIEKKKYALTSEARISAK-IVAAIPFIFLFML 263
>gi|57641787|ref|YP_184265.1| hypothetical protein TK1852 [Thermococcus kodakarensis KOD1]
gi|57160111|dbj|BAD86041.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
KOD1]
Length = 351
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 114/283 (40%), Gaps = 9/283 (3%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL---NLKAILV 94
+++R+K++ ++ L +++ ++++ + + + ++ + +
Sbjct: 28 GKNVQERLKALKELQKELEREKEQKDERETFIEAVIEQRKEEVQQPFAQRLASAILKYFR 87
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVR---LVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+G + + + + + + ++ + F + L+ P + +
Sbjct: 88 GPVERLTTSLSGLDVDLYRANITMSKEAYVAYMLGVAMITAFFGFVFAYLMYLPIDISLL 147
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A L GF + + ++R +++A P AL + + +G+ I +A+ VA+
Sbjct: 148 AGFLGFLGGFFYMRYYPKMVWKRRVREVEKALPYALRHIASLLSAGVGIAEAMLSVAK-- 205
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
PLSEE L I ++ + + A F + + V + ++++ ++G ++ +
Sbjct: 206 -ADYGPLSEEFELVIRDMRTGSSFEEAMLKFEEKMASENVSRVVKQILRAVKFGGNLAEI 264
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L L + E M+ + + V M + + +LV+
Sbjct: 265 LYKLAEDFAFEYRMKLVEYVQKVNGISFVYMFMTIVMPTMLVV 307
>gi|294631144|ref|ZP_06709704.1| integral membrane protein [Streptomyces sp. e14]
gi|292834477|gb|EFF92826.1| integral membrane protein [Streptomyces sp. e14]
Length = 295
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 13/290 (4%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
+L+ A+V G A R + + D +R
Sbjct: 1 MALLLALVTGLSVWGVFAGIRMYRADARLPSDLALALEVGATRTGAVDSVIDRLGMRYAP 60
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L L + K+ AG +++ R + G L +
Sbjct: 61 AVLRLMGPKLVARYRRKIDLAGNPGGLTIDRYAARR----------AVYGFLGGVGGLVF 110
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + +L+ G V I + ++ R+ I+R PD LD+L + V +G+ QAL
Sbjct: 111 VLRGQYFVALLLFAFGALWTEVGIWSAIRIRKDVIERTLPDFLDVLAVVVSAGLGFRQAL 170
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
RVA G P ++E+ +T+ ++ +R+ AF R + V AL Q +
Sbjct: 171 DRVAARYEG---PWADELRITLRQMDLGMSRRQAFAELRRRNDSEQVAMFVTALQQGEEL 227
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G I D+L L + R A +KAA PK T+ + F +P ++++
Sbjct: 228 GAPIVDTLVSLAKDMRRTDAQNARRKAARAVPKATMMITTFMVPATMILL 277
>gi|296158516|ref|ZP_06841346.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891084|gb|EFG70872.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 282
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 78/187 (41%), Gaps = 3/187 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + ++ + + + + P ++ + +KR ++++ PDAL
Sbjct: 56 AAAWSMVVMVGLPVIVFLLSHSILFALAAVPIAMMLPKKYLKRMRKKRIEALEKQLPDAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +G S AL V + + P+S+E L + E+ + +A N R
Sbjct: 116 LMMSGALRAGASFPSALEAV---VHETTPPISQEFDLLMREIRLGIDLDIAMRNVEKRIP 172
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + T A+ + G ++ ++L + R + ME + +A + ++ ++
Sbjct: 173 IPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIRALTSQGRMQGIVMTCLP 232
Query: 308 PVLILVI 314
L+LV+
Sbjct: 233 LFLMLVL 239
>gi|283778971|ref|YP_003369726.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437424|gb|ADB15866.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 309
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/271 (20%), Positives = 104/271 (38%), Gaps = 17/271 (6%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ S +R R S L + + + L AG+R + ++ L
Sbjct: 28 RTSQETRRRALASDDAERAAPVTQLDDMWL---LRRWLFLAGYRQPGATTFFALLTLGTT 84
Query: 125 IIFLILGIIWIF-------------GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++ + + + + E + +I P++ ++
Sbjct: 85 MLGGVAITFFFYSGLYQVMVVSADAVPGGVGEVFLPAVWLSPWIILLGLSALPALVVNRS 144
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
QKR I++ P L+LL E+G+ D A++R+ + PL+ E A+L
Sbjct: 145 RQKRVEMIEQDLPLTLELLATLSEAGLGFDAAMQRI-QSTRLAVRPLASEFRSYQADLLA 203
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
R + +R Q+ + AL+Q+++ G I LR + R R A A
Sbjct: 204 GRPRTQSLRRLSSRIQVPAISIFVSALVQAEQLGMGIAQVLRRQADDMRDRRRERANAFA 263
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
SL K +P+++ FLP L + +GP + +
Sbjct: 264 MSLTVKRVIPLVVCFLPGLFVWTLGPFFVQL 294
>gi|319795560|ref|YP_004157200.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598023|gb|ADU39089.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 285
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 79/192 (41%), Gaps = 4/192 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ G ++ + + ++ V + P+ W + +KR+ I+ P
Sbjct: 57 AVAFASGHAFLVALCGAIGWLISGNPLGGLVAATVLYLLPARWFAWQRKKRRQQIESELP 116
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL + + +G ++ A++ + + Q PL +E L + E + A +
Sbjct: 117 DALLFIASALRAGSALSVAVQVL---VRDQQGPLGQEFGLVLKEQRLGVSFDDAIQKMSQ 173
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + AL S G ++ + L+VL R + ++E +A + ++ +++
Sbjct: 174 RLGIPDFVLVVVALRVSKEVGGNLSEPLQVLAETLRRKAILEGRIQALTAQGRIQG-LVM 232
Query: 305 FFLPVLILVIIG 316
P+L++ ++
Sbjct: 233 TLFPLLLMGVLY 244
>gi|209515955|ref|ZP_03264816.1| type II secretion system protein [Burkholderia sp. H160]
gi|209503613|gb|EEA03608.1| type II secretion system protein [Burkholderia sp. H160]
Length = 325
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 99/293 (33%), Gaps = 19/293 (6%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
+ + + +G L ++ + R R Q+ + +R R+ + ++ +
Sbjct: 6 VVGAGAFLAIVLTGMLVSSLRDLVRNRPRRRIQERMKELQKVRVARQRSAAADTIGALFE 65
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP--IIFLILGIIWIFGYDKLLE 143
+ + + +++ +RLV I ++ I +
Sbjct: 66 RPKDYGAF------QRWFQQHVQRIRAVSGGGGIRLVCASGIAGAVIAFIVVRLAPLPGW 119
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ G + + L+ + ++ +PD LDL++ V +GI + QA
Sbjct: 120 SHLLIYCGLPLAATRFTY-------RFLIARFRAQFLLVFPDTLDLIIRAVRAGIPVVQA 172
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ + P+ L + + + R Q+ L+
Sbjct: 173 ISTAGK---EAEEPVRSTFRTMGDSLRLGADLKEVLDKAVARLQIADFSFFAVCLLLQRE 229
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G ++G++L L R+ R + + +A + ++ II +P I+ +
Sbjct: 230 TGGNLGETLENLSGIIRTRRDIRLKTRALTAEGRI-ASKIISAVPFAIMGFLY 281
>gi|187921508|ref|YP_001890540.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187719946|gb|ACD21169.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 282
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 84/200 (42%), Gaps = 5/200 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ ++ + + +L + P +++ + +KR ++++ PDAL
Sbjct: 56 AAAWSMVFMIGLPIIAFLLTGSILIALLAVPIAMTLPKKYLARMRKKRIGTLEKQLPDAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +G S AL V + + P+S+E L + E+ + +A N R
Sbjct: 116 LMMSGALRAGASFPSALEAV---VHETTPPISQEFDLLMREIRLGIDMDIAMRNVEKRIP 172
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ T A+ + G ++ ++L + R + ME + KA + ++ ++
Sbjct: 173 IPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIKALTSQGRMQGIVMTCLP 232
Query: 308 PVLILVI--IGPAILSIIDT 325
L+LV+ + P ++ + T
Sbjct: 233 LFLMLVLRFMEPKAMAPLFT 252
>gi|14521588|ref|NP_127064.1| hypothetical protein PAB1458 [Pyrococcus abyssi GE5]
gi|5458807|emb|CAB50294.1| Hypothetical protein [Pyrococcus abyssi GE5]
Length = 355
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 103/257 (40%), Gaps = 14/257 (5%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
K+ S RL K R V+ L+ + L A L
Sbjct: 70 REKEIKEPFSQRLAKGVLKYFRGPVESLS----GSIRGLEEDLYRANIMMSKELY----- 120
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + + ++ ++ F + ++E P + + + +GF + ++ ++R +
Sbjct: 121 -VALMLAVGLISGVFAFLFGIIIEMPIDMSLLIGVAGFLLGFMYMRFYPKSVWRRRVEEV 179
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+RA P L + + +GI + + + VA+ +SEE + + E+ + + A
Sbjct: 180 ERALPYVLRHMASLLNAGIGLAETMVSVAK---SDYGVISEEFRMMVQEMHKGSSFEDAL 236
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+F + + D V + ++++ ++G ++ D L + E E ++ +
Sbjct: 237 ASFEEKMKSDMVSRVVKQILRALKFGGNLADILYKMADEFSFEYRIKLMDYVQKINGISF 296
Query: 300 VPMIIF-FLPVLILVII 315
V M + +P L++V+I
Sbjct: 297 VYMFMTVVMPTLLIVVI 313
>gi|226309727|ref|YP_002769621.1| hypothetical protein BBR47_01400 [Brevibacillus brevis NBRC 100599]
gi|226092675|dbj|BAH41117.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 304
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/313 (15%), Positives = 118/313 (37%), Gaps = 12/313 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++I +V+IF Y + + ++ + +++ ++ +
Sbjct: 4 LVLSILVSVAIFL--YGLPSCVSKGEPIS---ATLLGRIDSVKQAKLEQSFQQGRKRWTL 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
R + + ++ + + I L G + +L + + I+ +
Sbjct: 59 VRSLEKNQVLLQHFYKWTGVDKKKIQETLARLGIDISLTEIVLFRLISMC----FIVSSL 114
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + G + I + P++ + + ++ ++ I+ P ++
Sbjct: 115 ASLSISMVHGEKITMVTGLPLTISLFLYLLPNMLLDRVDKRAKAEIREQVPIFFSIVQSL 174
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
VE+G+ + QA+++ A + L E+ N + A E R ++D +
Sbjct: 175 VEAGMPLQQAVKQTARRFDAR---LGRELASLEMGEKRHGNWRKALEELAFRWEVDSLTT 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ ++ + G SI L V V E ++ EA L +L +I+ L+ +
Sbjct: 232 IALEMNEAMKKGVSISQMLSVQVEEQVRQQEDEAATHMNRLNIRLLPFVIMLMGLPLLFL 291
Query: 314 IIGPAILSIIDTM 326
++GPA + I +++
Sbjct: 292 VMGPAFIGIGESL 304
>gi|85711971|ref|ZP_01043025.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
gi|85694157|gb|EAQ32101.1| Flp pilus assembly protein TadC [Idiomarina baltica OS145]
Length = 264
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 4/194 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + L+ QL ++L F + Q+ I R PD D
Sbjct: 70 VVTFACVIALLALVSLVLQLSWLMMMLTLLTAFIIQRGQRQFRSK--QARIYRELPDFSD 127
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + + SG+ + AL RV++ L+ E+ ++ + AF + ++
Sbjct: 128 LLAMMLASGLPLIPALDRVSK--ASSMGYLANEISYVGQQIRRGRDLTSAFTGLADLYRV 185
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + L + + G S+ ++L + R E+L AEKKA KL +P++ F P
Sbjct: 186 NALSEWCKLLNRGYQQGNSLTEALLFFSEQLRDEQLNLAEKKAQEAPVKLLLPLLSCFFP 245
Query: 309 VLILVIIGPAILSI 322
V LVI+GP + +
Sbjct: 246 VNFLVILGPIFIQL 259
>gi|333025169|ref|ZP_08453233.1| putative integral membrane protein [Streptomyces sp. Tu6071]
gi|332745021|gb|EGJ75462.1| putative integral membrane protein [Streptomyces sp. Tu6071]
Length = 294
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/299 (13%), Positives = 92/299 (30%), Gaps = 8/299 (2%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
+ + L+ + A+ + + K SL +
Sbjct: 3 VLVRALLPGARSPLQTVARVDALRARGAYEPPVHRGGKHEEDDGRFATARASLGLRLAAF 62
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIWIFGYDKLLEYPF 146
+ ++ L + S L ++++ + L+ G ++ +
Sbjct: 63 YRQQGWELRSLRADLA----VLDRSWERFLATKVLLGVAGLVFGPAVFAIVAVLGIGRSP 118
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ V +L G + F P + I Q ++ ++R LDL+ + + G + +AL
Sbjct: 119 LIPVWLALLCGILFFFLPDLEIRRDAQDKRRDLRRVIGAYLDLVAMSLAGGRGLPEALLA 178
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
AE G + + A ++ ++ + +L G
Sbjct: 179 AAEVSDGWAS--RRIRDALQDARITGHTQWYALGRLGEELGIEELKELSSSLALVADDGA 236
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +SL R L E E A + + + ++ +I PA + +
Sbjct: 237 KVRESLASRAETMRHRELAEIEGSAGEKSQSMLIAQ-LLLCAGFLVFLIFPAAMRVFQM 294
>gi|149909543|ref|ZP_01898197.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
gi|149807448|gb|EDM67399.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
Length = 305
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 7/205 (3%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
+S + + + L I+ IF + + ++ GF W+
Sbjct: 65 WSNCQRQLGSFALAKVILFAFILAIFAMNINSSFIRGSLPIVIVSFEIFGFIFGYFWLQR 124
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+K + A+P+AL++L V SG SI A+ V + G + +E L L
Sbjct: 125 REKK---QFEEAFPEALNMLTSAVSSGESIMHAIIFVGTALDG---EVGKEFKLMGDRLR 178
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ F+ NR + L + R+G + + + L R +E +K
Sbjct: 179 LGDSPDSVFKKSCNRFPYPAFQFFVITLRANMRHGGQLKEIMTRLNRLMFDARAIEKKKF 238
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
A + + + I+ +P + L ++
Sbjct: 239 ALTSEARASAK-IVGAIPFVFLFLL 262
>gi|75992384|dbj|BAE45050.1| putative integral membrane protein [Terrabacter sp. DBF63]
Length = 300
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 103/312 (33%), Gaps = 13/312 (4%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ +S + + + + + R+ V L + + + +S
Sbjct: 1 MTWMLVVLSGMGVGIGLTLIARELMPVHTRLD---VAIGNLSPANFAATARPTKTSDAPA 57
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L +++L L G S +L+VP++ ++ +
Sbjct: 58 EGIERLGAGLERLVAGRSWATAP-EADLDLLGI----STRRFWAQKLLVPLLGFVVLAML 112
Query: 135 IFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L L PF + G +LI V + AP + + + ++R+ A L L+ I
Sbjct: 113 GVLLSALNLGLPFAVPFGVGLLIAGVLWFAPDLVVRDQAKERREEFAFATISYLRLVAIR 172
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ A+ A + A + + Q+ +
Sbjct: 173 RLGHEGVVSAMSGAARISDEW--MFTRIRETLQRAQWSNVPPWDALDELADDLQVPELHE 230
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ G SI DSL + R L + + +A+ L+ P+ + + + +
Sbjct: 231 IADITRLTS-SGGSITDSLMSRAASMRDRLLSKEQVRASDATTSLSAPLAVLIM-LFMAS 288
Query: 314 IIGPAILSIIDT 325
++ P +S+I +
Sbjct: 289 LLFPMGISLIGS 300
>gi|307726637|ref|YP_003909850.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307587162|gb|ADN60559.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 282
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 79/200 (39%), Gaps = 5/200 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + +L + + V P + + +KR I++ PDAL
Sbjct: 56 AAAWSMLVIVGLPVLVFVLSRSLIIAAASIPVAMMLPRKYFERMRKKRIEVIEQQLPDAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +G S AL V + P+S+E L + E+ + +A N R
Sbjct: 116 LMMSGALRAGASFPTALEAV---VHETPPPISQEFDLLMREIRLGIDLDIAMRNVEKRIP 172
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ T A+ + G ++ ++L + R + ME + +A + ++ ++
Sbjct: 173 VPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIRALTSQGRMQGIVMTCLP 232
Query: 308 PVLILVI--IGPAILSIIDT 325
L+LV+ + P ++ + T
Sbjct: 233 LFLMLVLRFMEPKAMAPLFT 252
>gi|325964117|ref|YP_004242023.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470204|gb|ADX73889.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 309
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/303 (15%), Positives = 107/303 (35%), Gaps = 39/303 (12%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ ++ +I+ V P GS LE+R + +R + + T++
Sbjct: 4 VLAVALCLSALLLVIFVVFKPRFGSLPLERRRLGIQQDRSTVARVSQTAVTAVE------ 57
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
N+ L AG + + V ++ + +
Sbjct: 58 --------------NVIGDSGGPYNREVLYRAGV--KMAPADFTVAVVIASFLAGAFTAL 101
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+L G V ++ L +R++ + D + +L+
Sbjct: 102 LTHPV-------------LGLLAGAATPFLAKVVLAILRDRRRAKFEGQLTDTIQMLIGG 148
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ G S+ +++ A+ VP SEE+L + E + ++AFE+ R + R
Sbjct: 149 LRVGHSVLRSVEAAAQ---EADVPTSEELLRIVNETRIGKDSRLAFEDVAERMDSEDFRW 205
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+QA+ + G + + L + R ++ + ++ S K++ ++ +PV +
Sbjct: 206 ISQAIQINREVGGDLAEVLEQVAGTIRERSEIKGQIRSLSAEGKMSA-YVLMAMPVGVAF 264
Query: 314 IIG 316
I+
Sbjct: 265 ILA 267
>gi|315649137|ref|ZP_07902228.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
gi|315275453|gb|EFU38810.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
Length = 290
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/265 (19%), Positives = 102/265 (38%), Gaps = 9/265 (3%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
RL LR L +L + ++ +R + S+ + +R +
Sbjct: 25 GERYHRLSKLSMAGLRLQRLAPPLLFMLERGKVPMRIPIVFYRMQGSVQKIYGLRHSAEL 84
Query: 126 IFL----ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSS 178
L L W+ + V +I +G P + +L +K R+
Sbjct: 85 TLLFMAEALAYTWLIWIGGCIWALLSGEVMGLIAGLGLGALLPVALVKDLHKKVMLREQE 144
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I P+ L+ +++ V +G ++ +A+ E + PL E+ + E Q A
Sbjct: 145 IIMELPELLNKIVLLVGAGETVQRAVIHCVERNKDMNHPLYAELKRMVLEWEGGHPFQQA 204
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPK 297
FE F R + V T ++ + R G + +LR L +R + K
Sbjct: 205 FEQFNKRCGVQEVSIFTTTVLLNFRRGGNDFVMALRDLSRVLWEKRKAIGRTRGEQASSK 264
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +PM++ F+ ++I+++ PA + +
Sbjct: 265 LVLPMVVIFM-IVIVLLGAPAFMMM 288
>gi|295107880|emb|CBL21833.1| hypothetical protein [Ruminococcus obeum A2-162]
Length = 247
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 76/198 (38%), Gaps = 7/198 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ ++Y F + L V L+++R+ ++ + DAL+ L
Sbjct: 19 LVQGLLLCGAVDYLFYQNPWLMFLALPVTVFFLKWKKKGLIRERKKNLNYQFKDALNALS 78
Query: 192 ICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ V++G S++ A+ + D+ + E +L + +F +R+ +
Sbjct: 79 VAVQAGYSVENAVMACSRDLERLYPQETDIVREFHYMETQLKVSVPVEELLMSFGDRSGI 138
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + N + R G + ++ + + E + +L K MI+ +P
Sbjct: 139 EDIENFAAVFYTAKRTGGDMNRIIQTSSRMLGDKIDVRREIET-TLAAKKAEQMIMSLMP 197
Query: 309 VLILVII---GPAILSII 323
I++ + P L ++
Sbjct: 198 AGIILYLKMTSPGFLEVL 215
>gi|92113785|ref|YP_573713.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
gi|91796875|gb|ABE59014.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
Length = 297
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/273 (17%), Positives = 110/273 (40%), Gaps = 4/273 (1%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
+ ++ + + +T +++ + + LR AGF +
Sbjct: 24 IAQRAAERQTPTAPAPWRQTESWLLRSGSAWRVHRRRHARSAELAIILRQAGFIGSRAQA 83
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
LL V ++ + +LG++W + + + L + L G V + W+ N ++
Sbjct: 84 RLLAVLGILAVSVTLLGMLWGWEQGRGVAGSLFLGLALGALTGVVAW----AWLKNRRRR 139
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R + L + + E+G++++ L+ + +++ + E+ ++
Sbjct: 140 RTRVLDEEIGLVLQVTRMLWEAGMTLESVLQGLIDNLANTAPETVRELRSVTHKIEAGQA 199
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R+ A E + + + + L Q G DSLR L R R ++ L
Sbjct: 200 REEALEEVAGIQASEGLGDLLKLLAQVSASGGGARDSLRTLADLLRDRRRTRLQEAVTRL 259
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+++ M++F P L++V+ GPA+L++ +
Sbjct: 260 SGKMSLVMMVFLFPALLIVLAGPAVLNLAGALA 292
>gi|311744032|ref|ZP_07717838.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
gi|311313162|gb|EFQ83073.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
Length = 304
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 91/286 (31%), Gaps = 6/286 (2%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + ++ + +++ G + ++ R + T+L D
Sbjct: 1 MILVLACGALAGVGALLLVLQFDHGTGTAAAELARLDAARQRSTRTTTLTADRRHQTESQ 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R + + + V + L G S+ L + ++ + L +
Sbjct: 61 RLRRVGSTVRAGMEARGWKVPAGVRADLAVMG----RSVETHLGMSVLAGVAGLFAPAVA 116
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + + ++ G GF + +S ++R+ + LDL+ + +
Sbjct: 117 LSPLIYAFDLSLTIPLWLALVGGAGGFVLATAQLSTEAKERRRDFRHVVSAFLDLVSMNL 176
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G + +AL A + + + A L A + + + + +
Sbjct: 177 AGGRGVPEALSAAA-GLSDGWAMVRLRDAMESARLQ-GVTPWAALGDLGDEMAVKELSDL 234
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
AL G + SL + R L +AE +A + V
Sbjct: 235 AAALALVAEDGAKVRQSLAARAASMRQRELTDAEGRAEQQSQSMLV 280
>gi|302343415|ref|YP_003807944.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
gi|301640028|gb|ADK85350.1| Type II secretion system F domain protein [Desulfarculus baarsii
DSM 2075]
Length = 322
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 22/309 (7%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
++ ++F + + + + + S RL
Sbjct: 1 MSWLIGAAVFFSVICLALGL---------------RYLLSPAGEAPSQAARRRLRRLGAE 45
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ L + + + + A L LL + ++ + +
Sbjct: 46 NTPPDSQLEALLRVTSYSEISFLDRLIARA--PRLLRLQDLLDKAGNPINLGTLVLLCGV 103
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L + + P + +S + KR S + +P+A++L+ +
Sbjct: 104 LAVAGALLGLGLALGYLSLGLALGLGYLPLMAVSKIKAKRLSVFESQFPEAVELVGRALR 163
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S LR V E++G P++ E T + SF + A R +++ V+
Sbjct: 164 AGHSFSAGLRMVGEELGE---PVASEFNKTFEDYSFGKTMEEALTGLVRRVELEDVKFFA 220
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
A+ G ++ + L + R ++ +A S +L+ ++ P L ++
Sbjct: 221 SAVSLQRETGGNLTEILDNIAYIIRERFRLQRTVRALSAEGRLSGWILSLMPPALFAMLY 280
Query: 316 G--PAILSI 322
P +++
Sbjct: 281 WSTPEYINM 289
>gi|303238718|ref|ZP_07325251.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302593837|gb|EFL63552.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 264
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 80/192 (41%), Gaps = 5/192 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + L+ Y F +++ +V P + +++KR++ + + D L
Sbjct: 32 VGYTLLAAVAVYLIAYIFYQNCIISLVVSFVALLYPKIRNKEIIEKRKNELNLQFRDMLY 91
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +G SI+ + + V +D+ + +E+ + ++ + A E+F
Sbjct: 92 SLSSSLSAGKSIESSFKEVLKDLSIIYPDSNSFIIKEVEYIVRKIEMNETIESALEDFAA 151
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R+ ++ + N L S R G +I D ++ + + ++ E K I+
Sbjct: 152 RSHLEDIENFVDVLQTSKRTGGNIVDIIKNSSNIISDKIEVKEEIDTLLASRK-FEQKIL 210
Query: 305 FFLPVLILVIIG 316
+PV++++ +
Sbjct: 211 ALMPVMLILFLS 222
>gi|238762412|ref|ZP_04623383.1| Type II secretion system protein F domain protein [Yersinia
kristensenii ATCC 33638]
gi|238699397|gb|EEP92143.1| Type II secretion system protein F domain protein [Yersinia
kristensenii ATCC 33638]
Length = 284
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/202 (17%), Positives = 83/202 (41%), Gaps = 6/202 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ +I+ G + + ++ + + +S ++ + K+ +P+AL
Sbjct: 60 ILIPVIYSIGIYAVNYFWLNFNTLIILFFIMISVIYFQLRLS--RKRHHTLFKKDFPEAL 117
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + SG SI+Q L R ++I S PL E L L+ + + F + Y R +
Sbjct: 118 LMINMAASSGASINQVLERCGQEI---SGPLGNEFSLICRRLNVGESPEAVFYDSYQRFK 174
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + G + + L + E +K + +++V II +
Sbjct: 175 HPEFYFLITITLLNLQQGGQLRELTSRLSEVINKNKTTEQKKAVMTAQVRMSV-NIISIM 233
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
P+ ++ + I++M DH
Sbjct: 234 PIAFSFLLYFLDPTTIESMWDH 255
>gi|153811266|ref|ZP_01963934.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
gi|149832764|gb|EDM87848.1| hypothetical protein RUMOBE_01658 [Ruminococcus obeum ATCC 29174]
Length = 247
Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/198 (16%), Positives = 78/198 (39%), Gaps = 7/198 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+I ++Y F ++L V + L+++R+ + + DAL+ L
Sbjct: 19 LIQSILLCGAMDYLFYQNWWLMLLTVPVTVLFMRLKKKGLIRERKRKLNYQFKDALNALS 78
Query: 192 ICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ V++G S++ A+ + D+ + +E +L + + +R+ +
Sbjct: 79 VAVQAGYSVENAVAACSRDLERLYPKETDIVKEFHYIETQLRVSVPVEELLLSLGDRSGI 138
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ V N + R G + ++ + + E + +L K MI+ +P
Sbjct: 139 EDVENFAAVFYTAKRTGGDMNRIIQTSARMLGDKIDVRKEIET-TLAAKKAEQMIMSLMP 197
Query: 309 VLILVII---GPAILSII 323
I++ + P LS++
Sbjct: 198 AGIILYLKLTSPGFLSVL 215
>gi|167760287|ref|ZP_02432414.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
gi|167662170|gb|EDS06300.1| hypothetical protein CLOSCI_02660 [Clostridium scindens ATCC 35704]
Length = 382
Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
++Y + + ILI + + I ++++ + +P+ ++ L + + +G+++
Sbjct: 195 MDYRGLVLIVMAILIAILLYALKQQNIRKEGEEKKRQMMLDYPEIVNKLALFLGAGMTVK 254
Query: 202 QALRRVAEDI-----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
+A R+V ED G + EEM E+ ++ENF R +
Sbjct: 255 RAWRKVVEDYERHKTDGNARHAYEEMKKACYEMESGVMETESYENFGRRCNVQSYIRLGA 314
Query: 257 ALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
L Q+ R GT + LR+ + ER A++ G KL +PM + VLI+VI+
Sbjct: 315 LLSQNLRKGTKGLTHLLRLESIQAFEERKARAKRLGEEAGTKLLLPMFLMLAIVLIIVIV 374
Query: 316 GPAILSI 322
PA LSI
Sbjct: 375 -PAFLSI 380
>gi|78486065|ref|YP_391990.1| type II secretion system protein [Thiomicrospira crunogena XCL-2]
gi|78364351|gb|ABB42316.1| Flp (type IV) pilus assembly protein, TadC homolog [Thiomicrospira
crunogena XCL-2]
Length = 315
Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 34/293 (11%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + F ++ A R K A++ + R +S +++
Sbjct: 1 MLDLGFLIVVLAIMMPFLVLAAGFYFKSN------RQKKEALDTLMQRVGIESSQKQNYR 54
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++ + S+ + L KA L D IV +L L
Sbjct: 55 AAYHTIQQKDSILRWGASLLKKAGLQDTKIVIRL-------------------------L 89
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + +F LL F G +LI + PS +I ++RQ+ +++ +P+ LD
Sbjct: 90 VIQSLLLFFSAYLLSTRFNHLDGKAVLIAILLPLLPSFFILFKKKQRQNRLRQQFPEMLD 149
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ ++SG ID AL +AE+ PL +E+ +L+ + + +F R ++
Sbjct: 150 AIVRALQSGYGIDGALSMIAEEFR---APLGKEVKEVNRQLTLGISMRDILRDFQTRIEI 206
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ LI G + L L R + +A+ K + + T
Sbjct: 207 PEAQFFVVTLIIQRETGGQLAPILEELSRLMRRREMFQAKLKTLTAESRFTAI 259
>gi|197302282|ref|ZP_03167341.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
29176]
gi|197298713|gb|EDY33254.1| hypothetical protein RUMLAC_01009 [Ruminococcus lactaris ATCC
29176]
Length = 410
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 7/193 (3%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + A + F + + ++ ++R +P ++ + +
Sbjct: 217 ITWSHEKNSGTVGILIAGGGAAVMVFVSENQKKKEKKKRESEEMRRDYPQIINRFSLYIG 276
Query: 196 SGISIDQALRRVAEDIG-----GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+G+S+ A +R+ ED EEM+ T ++ +E + R +
Sbjct: 277 AGMSVRNAWQRITEDYRKNKERTGRRKAYEEMIYTENQMKNKAAESECYEEYGIRCGLSV 336
Query: 251 VRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
R L Q+ R G+ + + L+ E ER +A K G KL +P+ + L V
Sbjct: 337 YRRFGTLLSQNLRKGSKGLSELLKRETGEMFEERKKQARKLGEEAGTKLMIPLFM-MLAV 395
Query: 310 LILVIIGPAILSI 322
+ +++I PA +I
Sbjct: 396 VFIIVIVPAFFTI 408
>gi|152967730|ref|YP_001363514.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151362247|gb|ABS05250.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 295
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/269 (13%), Positives = 88/269 (32%), Gaps = 10/269 (3%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
R A R + +L ++ + + G +E
Sbjct: 34 TARVAPYLRAAGPRAGDWWREPLRSTGTAVAARLGPGRVVAE---RLAVLDPGGDAEAEA 90
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+++ + +L ++ L + + G + ++ V+
Sbjct: 91 AQHRAEQVLWAVAGAVLAVLLARVAAGLPPLAVLALLVSGGAGGALAR---GELLARRVR 147
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ I PD +LL + V +G ++ AL RV+ S PL ++ ++ +
Sbjct: 148 VRRGEIAADLPDVAELLALSVGAGENVVAALERVS----AGSGPLCAQLRHSLGRVRTGT 203
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + R + + + G+ + + LR ++ R +
Sbjct: 204 PLLDALVDLAGRWGVAPFTRLVDGIAVAVESGSPLAEVLRAQAADAREAERRRLLETGGR 263
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ VP++ LPV ++ + P + +
Sbjct: 264 REVQMMVPVVFGVLPVTVVFAVFPGLAQL 292
>gi|291546643|emb|CBL19751.1| Flp pilus assembly protein TadB [Ruminococcus sp. SR1/5]
Length = 260
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 79/198 (39%), Gaps = 7/198 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + +Y F + ++ + + + ++Q + + DAL +
Sbjct: 32 LLEGAAVCAVADYLFYQSLPVLLFMLPIPVLFLKMQRKKCTARQQRELNYQFRDALTAMN 91
Query: 192 ICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ V++G S + A+R +D+G + +E ++L + F + R+ +
Sbjct: 92 VAVQAGYSAENAVRASVKDLGRLYEKGSDILDEFRYIESQLRLSVPVEELFLDLGKRSGV 151
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + N + R G + ++ + + ++ E +A +L K + M++ +P
Sbjct: 152 EDIENFAAVFYTAKRTGGDMTQVIQKVARMLSDKIEVKKEIEA-TLAAKKSEQMVMSIMP 210
Query: 309 VLILVII---GPAILSII 323
I+ + P L ++
Sbjct: 211 AGIICYLKLTSPGFLDVL 228
>gi|197123314|ref|YP_002135265.1| type II secretion system protein [Anaeromyxobacter sp. K]
gi|196173163|gb|ACG74136.1| type II secretion system protein [Anaeromyxobacter sp. K]
Length = 320
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/287 (14%), Positives = 101/287 (35%), Gaps = 22/287 (7%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ A R ++++ ++ + SA R + + + L+ + + L A
Sbjct: 25 RYFADRRSAELRRRLHAIGRGSALDADLLRRGRLAKAPALQQVLEQVPGARRLERLLEQA 84
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
S +++ L + L ++ ++G+ G + P
Sbjct: 85 --DSSWTVARLGALTLAGGLVAALIGVSLRSGAVGIGGLAAGGAA------------LPI 130
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
V + + KR + + P+ALD++ + +G ++ A + VA ++ P+S E
Sbjct: 131 VGVLSARAKRSAKLSEQLPEALDMMARSLRAGHAVTAAFQVVASEM---PEPVSVEFARA 187
Query: 226 IAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
E + A R ++ + + G ++ + L + R
Sbjct: 188 YEEQRLGLTLERAVVQMSERCPGNGDMKIFAVSAVIQRETGGNLAEILDQIGETIRQRYR 247
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILV---IIGPAILSIIDTMKD 328
+ +A + + + +I+ LP + V I+ P L ++
Sbjct: 248 FYGKLRALTGEGRASA-VILGALPFAVAVALSILNPEYLMVLPGTAK 293
>gi|302384577|ref|YP_003820399.1| Type II secretion system F domain protein [Clostridium
saccharolyticum WM1]
gi|302195205|gb|ADL02776.1| Type II secretion system F domain protein [Clostridium
saccharolyticum WM1]
Length = 245
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 78/201 (38%), Gaps = 7/201 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + Y F V + +L + F P + S L +KR + + + +
Sbjct: 14 FLYGFQGLAAAGIFSYVFYRSVASFLLFLPMIFIFPHIKKSELKKKRLQQLNLEFKEGIL 73
Query: 189 LLLICVESGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LL + +G S++ A +++ G+ +S E ++++ + + A F R
Sbjct: 74 LLASFLSAGYSVENAFSASVKELVILYGEEGMVSMEFGHIVSQIRINRSVEQALSEFAGR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +D V+N + + R G + + + R + + E + K I+
Sbjct: 134 SGLDDVKNFAEVFAAAKRSGGELVSIISHTAAVIRDKMQVRQEILTMTAS-KQFEQKIMT 192
Query: 306 FLPVLILVII---GPAILSII 323
+P I++ I P +I+
Sbjct: 193 MIPFFIVLYIDMTSPGFFNIM 213
>gi|91777215|ref|YP_552423.1| putative type II secretion system protein F [Burkholderia
xenovorans LB400]
gi|91689875|gb|ABE33073.1| Putative type II secretion system protein F [Burkholderia
xenovorans LB400]
Length = 282
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 79/187 (42%), Gaps = 3/187 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + ++ + F + + + P ++ + +KR ++++ PDAL
Sbjct: 56 AAAWSMVVMVGLPVIVFLFSHSILFALASVPIAMMLPKKYLKRMRKKRIEALEKQLPDAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +G S AL V + + P+S+E L + E+ + +A N R
Sbjct: 116 LMMSGALRAGASFPAALEAV---VYETAPPISQEFDLLMREIRLGIDLDIAMRNVEKRIP 172
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + T A+ + G ++ ++L + R + ME + +A + ++ ++
Sbjct: 173 IPDLLMMTAAVTIAREVGGNLAEALESVARTLREKLQMEGKIRALTSQGRMQGIVMTCLP 232
Query: 308 PVLILVI 314
L+LV+
Sbjct: 233 LFLMLVL 239
>gi|255020084|ref|ZP_05292155.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
gi|254970446|gb|EET27937.1| type II secretion system protein [Acidithiobacillus caldus ATCC
51756]
Length = 284
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ LL Y V V++ + AP + L ++R + PD L ++
Sbjct: 63 VAALFLVPLLVYLLVPSVPIVVVAALLVAIAPRYVLLYLKKRRFLRLHDQLPDTLLMMAS 122
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G ++ Q L +A+D+ S P+++E+ L + E + A + R +
Sbjct: 123 ALRGGANLGQTLEGLAKDM---SPPMNQELSLVVREQRLGVPFEEAVSHLAERVRSQDFD 179
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL + G ++ D+L+ L R +ME + +A + KL +++ LPVLI+
Sbjct: 180 LVVSALRINREVGGNLADTLQRLGETVRRRLMMEQKIRALTSQGKLQG-IVMTALPVLII 238
Query: 313 VII 315
+ +
Sbjct: 239 LAL 241
>gi|251795274|ref|YP_003010005.1| type II secretion system protein [Paenibacillus sp. JDR-2]
gi|247542900|gb|ACS99918.1| type II secretion system protein [Paenibacillus sp. JDR-2]
Length = 282
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + LV++R+ +I P+AL L++ V +G + QA R E PL +E
Sbjct: 123 PFMEAGRLVERRKQAIVSELPEALSKLMLLVGAGEPVLQAFSRCLEGKDPAVQPLYKEWD 182
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSE 282
+ L + A E F + V T ++ + R G +LR + +
Sbjct: 183 RVVIALRNGESFSTALERFNRSCAVQEVSIFTTVILLNYRRGGDQFVLALREISYSLWEK 242
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R A + KL P++ L VL++ + PA+L +
Sbjct: 243 RKAVARSRGEEASSKLVFPLV-GILLVLMVFVAAPAMLLM 281
>gi|46143338|ref|ZP_00204445.1| COG4965: Flp pilus assembly protein TadB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208033|ref|YP_001053258.1| tight adherence protein B [Actinobacillus pleuropneumoniae L20]
gi|165975970|ref|YP_001651563.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|303252183|ref|ZP_07338351.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307247523|ref|ZP_07529568.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|126096825|gb|ABN73653.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165876071|gb|ABY69119.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|302648966|gb|EFL79154.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306856026|gb|EFM88184.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
Length = 295
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 5/187 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I+ + G L + A ++ +GF + + +P+ +
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFIFVIWKLGQRRNR--KLFNEKFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG+S+ QAL R +DI + P+ EE + L+ + F++ Y+R
Sbjct: 129 QVLNSATSSGVSLLQALERCGKDI---TGPIGEEFAIIYKRLARGEDVMAVFQDSYSRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACFP 245
Query: 308 PVLILVI 314
L +
Sbjct: 246 VGFFLFM 252
>gi|325678255|ref|ZP_08157883.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
gi|324110018|gb|EGC04206.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
Length = 290
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 86/211 (40%), Gaps = 6/211 (2%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G R +L + ++ L+ ++++ E + + V + S
Sbjct: 77 GRRYADFYVRVLYAQTYTYVLLLVYSMLFLACVMGGSEGALFVLLAVVSGAAIYKYYLNS 136
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ ++K + R +P+A+ + + V G+ + +A ++VA PL +M
Sbjct: 137 F--GSKIEKMNETYMRDFPNAVSTIALLVNGGMFLREAWKQVA---ISSDEPLYVQMRGV 191
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERL 284
+ +++ + A F NR +R + + Q+ GT + D+L +E+
Sbjct: 192 VDDMNNGVSEIDALFRFANRCSTKEIRKFSTTITQAIESDGTHLADTLIKQADLLLNEKK 251
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ KL P+ + F+ VL+++++
Sbjct: 252 QMVLQQGEKASNKLMFPIGLIFIGVLVMIMV 282
>gi|220913394|ref|YP_002488703.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860272|gb|ACL40614.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 310
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 24/270 (8%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ S L ++R+F + L + I + +L AG R + +
Sbjct: 32 DRRRPFEPEPPSSLARFALSAVRSFERLLAGRNISLFS--RPQLENAGLRLSQA--EFFL 87
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ + + +++G + I LL VG +++ G KR+++
Sbjct: 88 LVGIGSGLGMLVGTVTINPLVGLLLALLAPFVGKLVVGFLAG-------------KRRAA 134
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
D L LL + +G SI +A+ A P SEEM I E S + A
Sbjct: 135 FDGQLGDTLQLLSGGLRAGHSILRAIDAAA---AESQKPTSEEMRRVITETSLGRDLLAA 191
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ +R + + +QA+ + G ++ D L + R ++ KA + K
Sbjct: 192 LNDTADRMKNEDFVWISQAIQINREVGGNLADVLDQVNETIRERAEIKGHIKALAAEGKF 251
Query: 299 TVPMIIFFLP---VLILVIIGPAILSIIDT 325
+ I+ +P V +L+ + P ++ + T
Sbjct: 252 SA-YILIAMPFGIVAMLLAVSPTYMNSMFT 280
>gi|307256570|ref|ZP_07538351.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306864980|gb|EFM96882.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
Length = 295
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 5/187 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I+ + G L + A ++ +GF + + +P+ +
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFIFVIWKLGQRRNR--KLFNEKFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG+S+ QAL R +DI + P+ EE + L+ + F++ Y+R
Sbjct: 129 QVLNSATSSGVSLLQALERCGKDI---TGPIGEEFAIIYKRLARGEDVMAVFQDSYSRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACFP 245
Query: 308 PVLILVI 314
L +
Sbjct: 246 VGFFLFM 252
>gi|251795273|ref|YP_003010004.1| type II secretion system protein [Paenibacillus sp. JDR-2]
gi|247542899|gb|ACS99917.1| type II secretion system protein [Paenibacillus sp. JDR-2]
Length = 287
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 8/203 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ F Y L G AP ++ S L+ +R+ ++ + +AL
Sbjct: 55 FMGSAAVGFVIIFAAVYLIYHSFIVSGLFAAGGLAAPRMYKSFLLVRRKERLQLQFKEAL 114
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFY 243
L + +G S++ A +D+ L E + L + A +
Sbjct: 115 YSLASSLAAGRSVENAFLATIDDLKLLYPDPNTELLLEFRIVKYRLDNGEPLEQALRSLA 174
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT +D + + R G + + ++ + ++ E K I
Sbjct: 175 KRTHLDDITQFSDVFAVCKRSGGDLVEVMKRTSQTIGEKLEVKQEISVLLAQ-KRFEARI 233
Query: 304 IFFLPVLILVII---GPAILSII 323
+ +P L + P + +
Sbjct: 234 MMAVPFAFLGFLSAFAPDYMKPL 256
>gi|127511577|ref|YP_001092774.1| type II secretion system protein [Shewanella loihica PV-4]
gi|126636872|gb|ABO22515.1| type II secretion system protein [Shewanella loihica PV-4]
Length = 283
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 4/189 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + L F IL+ P L ++R+ PDAL
Sbjct: 57 LFVINMLTLLAVPFLVRLFFGSWVLGILLSIALALLPRFAYQFLHKRRRRKFVHQLPDAL 116
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+++ ++SG ++ A+ +AE++ P+ +E L + E A +N + R
Sbjct: 117 NMIASSMQSGANVSNAIEFMAEEME---APIKQEFQLFLREQRLGVEFNTALDNMFKRIP 173
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + T + S G ++ + L+ L + R + ME + A + K+ +++ L
Sbjct: 174 EEEFQLVTAGMQISREVGGNLAEVLQRLSATLRKKIEMEGKIDALTSQGKMQG-IVMTLL 232
Query: 308 PVLILVIIG 316
PV I V++
Sbjct: 233 PVFIGVVLY 241
>gi|251791987|ref|YP_003006707.1| TadB [Aggregatibacter aphrophilus NJ8700]
gi|247533374|gb|ACS96620.1| TadB [Aggregatibacter aphrophilus NJ8700]
Length = 294
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 6/208 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + I +++ + F + + L+ V F
Sbjct: 50 RVTLWYYYFIGGNKKNLIRNIVISCLAFFALFIVNVAYVHVDRLVFCLLFGVAFILFVWK 109
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ K + +P+ + ++ SG + QAL R +D+ GQ L EE
Sbjct: 110 LGQHRNK--KTFNAMFPEVIQIMNAAATSGAGLLQALERCGKDLTGQ---LGEEFKSIHK 164
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
LS + FE+ Y+R + + G I + + L ME
Sbjct: 165 RLSIGEDPMAVFEDSYSRYPYKEFYFFITIVRTNLNKGGQIREVISRLGRLIADSNKMEK 224
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+KKA + +++ MI+ LPV +
Sbjct: 225 KKKAMTSEARMSA-MIVACLPVGFFFFM 251
>gi|171921005|gb|ACB59188.1| TadB [Actinobacillus suis ATCC 33415]
Length = 295
Score = 82.9 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 5/187 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I+ + G L + +++ +GF + K +P+ +
Sbjct: 71 IIIHFLIFTGLYYLNAQFIRFNNQLFMVVELIGFIVAVWKLGQRRNK--KLFNEKFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SGIS+ QAL R +DI + P+ EE + L+ + F + Y+R
Sbjct: 129 QVLNSATSSGISLLQALERCGKDI---TGPIGEEFSIIYKRLARGEDAMAVFHDSYSRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACFP 245
Query: 308 PVLILVI 314
L +
Sbjct: 246 VAFFLFM 252
>gi|312136703|ref|YP_004004040.1| type ii secretion system f domain protein [Methanothermus fervidus
DSM 2088]
gi|311224422|gb|ADP77278.1| Type II secretion system F domain protein [Methanothermus fervidus
DSM 2088]
Length = 355
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 42/269 (15%), Positives = 86/269 (31%), Gaps = 14/269 (5%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
++ + + + +K K E++ L R + +
Sbjct: 68 RRPKMSESEIEILKRLVETEAYKEKLSEKPEEKERYETESLSKLLEE---REKELDPKFV 124
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ ++ L L II + + + R
Sbjct: 125 YLTGIITGSILALVIILLGFGFVFALLSLLVMFMVSVFA--------RFLPKLREGSRAD 176
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I R P AL + + +G+ A++ VA LSEE T+ E+ + +
Sbjct: 177 EISRELPYALRQMATELRAGLGFHDAMKSVAT---SGYGALSEEFARTLEEIKYGESTTR 233
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A N R ++ A Q +++S G + +L ++ + E M+ + L
Sbjct: 234 ALMNLSVRVPSPGLKRAIQQIVRSLESGGDVAKALEIIAEDIAYELRMKFRDYSQKLNSF 293
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + M I + +L I+ + TM
Sbjct: 294 MMIYMFIGIVGPAVLPILLIIATIFMPTM 322
>gi|257784834|ref|YP_003180051.1| type II secretion system protein [Atopobium parvulum DSM 20469]
gi|257473341|gb|ACV51460.1| type II secretion system protein [Atopobium parvulum DSM 20469]
Length = 204
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + + S R P+ +D+L++ + SG+S D AL +S LS+E+
Sbjct: 49 LRAKSEFTRKSCLREMPEMIDILILGLSSGLSFDSALDLYC---LRESGELSKELSNAHM 105
Query: 228 ELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
R+ A R + +++ + ++ +GT + + L S R E+
Sbjct: 106 TWKLGANTREEALNQMAARVGVPSLKSFATVVNEALTFGTPLAEILDRQASVLRDEQRSL 165
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
E + + K+ +P+ +P ++L I+GP
Sbjct: 166 LETEIEKIPIKMLIPLGTLIVPAMLLAILGP 196
>gi|87308907|ref|ZP_01091045.1| putative membrane protein [Blastopirellula marina DSM 3645]
gi|87288250|gb|EAQ80146.1| putative membrane protein [Blastopirellula marina DSM 3645]
Length = 310
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 3/198 (1%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + L + L + +I + + + L+ +G A
Sbjct: 62 GQFDSWLTRTLYLSGLDFGPGMAVALMIAVGATCGVAAFVITEDPLVTGLVTVLGIFACL 121
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + +R + + +P AL+L+ V +G S +QA++ V E P+ E
Sbjct: 122 GVLIWIKNRRLRAFQDQFPSALELIARAVRAGESFEQAIQLVGESSED---PIGVEFRRC 178
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+L + A E +R ++ V+ + G ++ ++L L + R
Sbjct: 179 AKQLDVGLSAPKAMEGMADRVELMDVKIFATTISVHRESGGALPETLDRLAAVIRDRMAY 238
Query: 286 EAEKKAASLGPKLTVPMI 303
+ ++ + +++ +I
Sbjct: 239 HRQLRSITSSGRMSATII 256
>gi|326331491|ref|ZP_08197781.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
gi|325950747|gb|EGD42797.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
Length = 300
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/314 (14%), Positives = 110/314 (35%), Gaps = 19/314 (6%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ L +A+ + I IY + L V V+ + + + +
Sbjct: 1 MTSGLLLAMISGGFIGLGIYMFFVWML----------PVHVDLADALARLSPTRVQQNQH 50
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
T ++ L + ++ I V I SL +L+ ++ L
Sbjct: 51 QDEATSTTERLGLWAIRVLPPGIWVRTPIRELALL-----RISLARFYGEKLLFALLGLT 105
Query: 130 LGIIWIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + E P+ + + A I + + F P+ + +K + RA ++
Sbjct: 106 IPPLLTVFFGVIGIELPWTIPIVASIGLAVLMFFLPNYNAVDDAKKARLEFTRALGAYIE 165
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + +G + Q++ A S + A +
Sbjct: 166 MVALERNTGSGVRQSMEAAANVC--TSWVFTRLSEELTRSRWSGLPPWDALHALGVELGL 223
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + S G S+ +LR + R+ L + +A + G ++++P + +
Sbjct: 224 PELDDFADIMRLSGEEGASVYATLRARSNAMRTAMLNDELTEANATGERMSIPSSLLGV- 282
Query: 309 VLILVIIGPAILSI 322
V + +++ PA+L +
Sbjct: 283 VFMGLLLAPALLRM 296
>gi|190149861|ref|YP_001968386.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|303251576|ref|ZP_07337750.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307249755|ref|ZP_07531733.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252111|ref|ZP_07534010.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307263185|ref|ZP_07544806.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|189914992|gb|ACE61244.1| tight adherence protein B [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|302649574|gb|EFL79756.1| Flp pilus assembly protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306858170|gb|EFM90248.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306860411|gb|EFM92425.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306871547|gb|EFN03270.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 295
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 5/187 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I+ + G L + A ++ +GF + + +P+ +
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFIFVIWKLGQRRNR--KLFNEKFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG+S+ QAL R +DI + P+ EE + L+ + F++ Y+R
Sbjct: 129 QVLNSATSSGVSLLQALERCGKDI---TGPIGEEFTIIYKRLARGEDVMAVFQDSYSRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACFP 245
Query: 308 PVLILVI 314
L +
Sbjct: 246 VGFFLFM 252
>gi|325958219|ref|YP_004289685.1| type ii secretion system F domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329651|gb|ADZ08713.1| Type II secretion system F domain protein [Methanobacterium sp.
AL-21]
Length = 371
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 6/209 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L +L++ I + ++++ G +IL+ + F + R
Sbjct: 136 LEPKLIMVIGGISFVVVFMLMIVLGFGVLVGAVFGLIILMISIIFV---FLPNIKKGSRS 192
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ R P AL + + +GI + ++R VA LSEE + E+ + +
Sbjct: 193 NEASRELPFALRQMATELRAGIGMHDSMRSVA---LSGYGALSEEFARALEEIKYGETTE 249
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + R + ++ A + ++ G + +L V+ +T E M+ + + L
Sbjct: 250 KALTDMSERVNSEGLKRAIYQITRTLSSGGDLAKTLNVIADDTAYEMRMKLKDYSQKLNS 309
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ M + L +I +I+ A +++ +
Sbjct: 310 FTMIYMFVAILGPVITMIMLIAASTVMGS 338
>gi|166033070|ref|ZP_02235899.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
27755]
gi|166027427|gb|EDR46184.1| hypothetical protein DORFOR_02792 [Dorea formicigenerans ATCC
27755]
Length = 230
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 21/198 (10%), Positives = 72/198 (36%), Gaps = 4/198 (2%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + AVIL+ G + +++++ + + + +
Sbjct: 5 VIIIVTGTAWIYYRSWVAVILLIPAGVWYYIQLLDECIKRKEQEFLVQFKELIQTFSSLL 64
Query: 195 ESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G S++ A++ +++ + E+ + + ++ + A E RT++ V
Sbjct: 65 NTGYSVENAVKESLKEMQIFYSDDAAILRELEIMVRQIRVQVPVEQAVEELSERTKLPDV 124
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + + R G ++ +R + + ++ E K ++ +P I
Sbjct: 125 ESFAGVFVTAKRSGGNLMSIIRNTADQIGDKIDVKREIDTMLAAKKYEFQ-VMSVIPFGI 183
Query: 312 LVIIGPAILSIIDTMKDH 329
++ + + + + +
Sbjct: 184 VLYMTVSFPEFMGNLYGN 201
>gi|330862290|emb|CBX72451.1| hypothetical protein YEW_HH31830 [Yersinia enterocolitica W22703]
Length = 293
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ I+ + I+ + L + + I++ + F + ++ K+ +P
Sbjct: 69 ILMPIVYSVSIYSVNYFLFHFNNIIALLFIMVSVICF-----QLRLSRKRYYRFFKQNFP 123
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++L ++ + SG SI+Q L R ++I S PL E L L+ + + F + Y
Sbjct: 124 ESLLMINMAASSGASINQILERCGQEI---SGPLGVEFNLVCRRLNVGESPESVFYDSYQ 180
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + ++ + + G + + L + E +K + +++V II
Sbjct: 181 RFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NII 239
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ + I++M H
Sbjct: 240 SIMPIAFSLLLYFLDPTTIESMWHH 264
>gi|220927957|ref|YP_002504866.1| Flp pilus assembly protein TadB-like protein [Clostridium
cellulolyticum H10]
gi|219998285|gb|ACL74886.1| Flp pilus assembly protein TadB-like protein [Clostridium
cellulolyticum H10]
Length = 247
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 77/192 (40%), Gaps = 5/192 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + + Y F I I +G + +++KR++ + + D L
Sbjct: 15 LVYALSAATVVFAVSYLFYRSFTVSIAISPLGIFYLNYRRKQIIEKRKNELNLQFKDLLI 74
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +G +++A D+ + E + I +LS + + A +F
Sbjct: 75 SLSSSLSAGKPLEKAFVGALSDLYVLYPSDDAYIVRETKIIINKLSLNVSIEEAVSDFAE 134
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R+ +D ++N + +I R G ++ D+++ + M E + L + ++
Sbjct: 135 RSDIDDIKNFSDVIIICKRTGGNLVDAIKNSSRIISEKIEMAQEIETL-LSSRKLEQKVL 193
Query: 305 FFLPVLILVIIG 316
+P+ ++ I+
Sbjct: 194 NIMPIAMIFILS 205
>gi|229588192|ref|YP_002870311.1| hypothetical protein PFLU0644 [Pseudomonas fluorescens SBW25]
gi|229360058|emb|CAY46912.1| putative membrane protein [Pseudomonas fluorescens SBW25]
Length = 294
Score = 82.9 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 23/229 (10%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ + AG L V+ + L + ++ P LRV
Sbjct: 55 LERMFQRAGLGKPTDRLGLWASAWVIGALLGWLLADGLGLIAMIVGPPLALRVFIA---- 110
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
Q+R + P LD + ++SG ++ A+ E I P
Sbjct: 111 ------------WRYQQRVQRMVEQLPQLLDHSVRSLKSGRTLADAVLGGVESIEN---P 155
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L + M + + + +F + D R L + RYG + + L L+
Sbjct: 156 LRDAMGRVQRNVRMGVSLPDSVSDFAEFYEQDEFRLFALGLKVNHRYGGNASELLENLIK 215
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSII 323
R + KA + ++T ++ LPVLI+ +++ P L +
Sbjct: 216 MIREREQGARQLKAMTGETRMTA-YVLGGLPVLIVGYFLVVNPGYLMNM 263
>gi|269128336|ref|YP_003301706.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268313294|gb|ACY99668.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 304
Score = 82.5 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/313 (15%), Positives = 103/313 (32%), Gaps = 10/313 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ +A+ ++ +Y +V + S+A + ++ S
Sbjct: 1 MTMAMLAGATVGLGLYLLVRALFPARP--GLAASLAAFDRARAQDTAERQRRVSPGMEEI 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-I 132
+ + + + ++ L E S L + ++P LI +
Sbjct: 59 SGLRARVGRALVRFYESRGWEQRSVRADLAL----LERSYEGFLATKFLLPAAALIFMPV 114
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L + +++ F P + + +R+ + LDL+ +
Sbjct: 115 LVGYAALVGLGDSLAVPAWMALIMAGFFFFLPDLQLRQEAAQRRRDFRHVVGAFLDLVAM 174
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G + +AL A+ +G + L A + A + +R
Sbjct: 175 NLAGGRGVPEALMTAAQ-VGDGWAMVRIREALANARI-VGQTPWQALGRLGEEVNVAELR 232
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ AL G I SL + RS L E E KA + + ++F ++
Sbjct: 233 DLAAALTLVADDGAKIRQSLAARAASMRSRELSELEGKAGERSQSMLIAQLLFCF-GFLV 291
Query: 313 VIIGPAILSIIDT 325
+ PA++ I+ T
Sbjct: 292 FLGFPALIRILVT 304
>gi|307245408|ref|ZP_07527496.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307254363|ref|ZP_07536201.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307258821|ref|ZP_07540553.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306853749|gb|EFM85966.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306862662|gb|EFM94618.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306867172|gb|EFM99028.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
Length = 295
Score = 82.5 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 5/187 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I+ + G L + A ++ +GF + + +P+ +
Sbjct: 71 IIIHFLIFIGLYYLNANYIRFPNQAFMIAEVIGFIFVIWKLGQRRNR--KLFNEKFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG+S+ QAL R +DI + P+ EE + L+ + F++ Y+R
Sbjct: 129 QVLNSATSSGVSLLQALERCGKDI---TGPIGEEFTIIYKRLARGEDVMAVFQDSYSRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + G + + + L ME +KKA + +++ ++ F
Sbjct: 186 YKEFYFFISIIRTNLSRGGQMREVISRLGRAIADSNKMEQKKKAMTSEARMSAAIVACFP 245
Query: 308 PVLILVI 314
L +
Sbjct: 246 VGFFLFM 252
>gi|294102186|ref|YP_003554044.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293617166|gb|ADE57320.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 309
Score = 82.5 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 52/318 (16%), Positives = 111/318 (34%), Gaps = 42/318 (13%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ A+ + +F +++ + +G E + T S + +
Sbjct: 4 MLFALIIGLLLFLMVWILFFVMVG---------------EEKDQMTRTEAWFFSDRAGKQ 48
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + K+ N + E L + +L L + +VVP + +L
Sbjct: 49 TSEKKTGGRPFAPDNFQKKFEAELSKADLP---LKFHEALLTWLGLIIVVPFLLFLLRGA 105
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ ++ + + Q+R +R P LD++
Sbjct: 106 FGLAVGIVVAIIVPVIIT-----------------RVRKQRRLQRFERQIPPMLDMVSSG 148
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S Q+L+ I PL + + +AE+S + + + R +
Sbjct: 149 LRAGFSFLQSLQNAGAQIE---APLGDTLQQVVAEISLGLDLEDVLNRWVERVGSLDLEL 205
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A +++ G ++ L + R + + A+ KA + +L +I+ LPV + V
Sbjct: 206 AVTSILIQREIGGNLAKILENIARVMRDRQDVAAQMKALTSQGRLEG-LIVSLLPVAMAV 264
Query: 314 IIG---PAILSIIDTMKD 328
II P LS + + +
Sbjct: 265 IINLLSPGYLSPLFSTQK 282
>gi|225386975|ref|ZP_03756739.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
DSM 15981]
gi|225046987|gb|EEG57233.1| hypothetical protein CLOSTASPAR_00725 [Clostridium asparagiforme
DSM 15981]
Length = 308
Score = 82.5 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 71/195 (36%), Gaps = 7/195 (3%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L Y F A +++ VG P +L ++R + + D + +L +
Sbjct: 83 GLAGCALAAYVFYRSAAAFLVMAPVGIVYPLYCREDLKRQRLCRLNLEFKDGILVLASFL 142
Query: 195 ESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G SI+ A+ ++ ++ E L + F + R+ ++ V
Sbjct: 143 SAGYSIENAVAASGRELTLLYGADGLMAGEFEEMARGLRLNRTVESVFLDLGGRSGLEDV 202
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
N Q + R G + + + R + ++ E + K I+ +PVLI
Sbjct: 203 NNFAQVFAAAKRSGGDLVEIISHTAGVIRDKVQVQEEIHTMTAS-KAFEQKIMSLVPVLI 261
Query: 312 LVII---GPAILSII 323
++ I P I+
Sbjct: 262 VLYIDLTSPGFFDIM 276
>gi|148976303|ref|ZP_01813027.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrionales bacterium SWAT-3]
gi|145964397|gb|EDK29652.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrionales bacterium SWAT-3]
Length = 302
Score = 82.5 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 9/211 (4%)
Query: 111 YSLNILLVVRLVVPII-----FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
S + + R + ++ I+ F P VI + +
Sbjct: 51 RSNKLYALFRRINALLCTSDKGFIILTAIGFPIASHAFLPKVALYYQVIAVAGLWLTCFF 110
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + + +++ L L+ V +G+S+ QA+ +VA++ G L E
Sbjct: 111 ALVFYRRKLQVEEFEKSIISVLGLISRAVSAGLSVPQAIDQVAQNEQGL---LGREFSYI 167
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L+ + + E+ R R + ALI + G + D L+ L R M
Sbjct: 168 RDNLALGLSLRDTLEDACIRLPYHSFRYFSVALILNQSNGGQLRDILQGLSRTMHDNRAM 227
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ K+ + P++T + + LP+ ++ I
Sbjct: 228 RKKVKSLTSEPRMTA-LFLSLLPIGLIGSIA 257
>gi|318604218|emb|CBY25716.1| flp pilus assembly protein TadB [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 293
Score = 82.5 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ I+ + I+ + L + + I++ + F + ++ K+ +P
Sbjct: 69 ILMPIVYSVSIYSVNYFLFHFNNIIALLFIMVSVICF-----QLRLSRKRYYRFFKQNFP 123
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++L ++ + SG SI+Q L R ++I S PL E L L+ + + F + Y
Sbjct: 124 ESLLMINMAASSGASINQILERCGQEI---SGPLGVEFNLVCRRLNVGESPESVFYDSYR 180
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + ++ + + G + + L + E +K + +++V II
Sbjct: 181 RFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NII 239
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ + I++M H
Sbjct: 240 SIMPIAFSLLLYFLDPTTIESMWHH 264
>gi|332970973|gb|EGK09947.1| integral membrane protein [Desmospora sp. 8437]
Length = 315
Score = 82.5 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 84/235 (35%), Gaps = 16/235 (6%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ I KL A + S I+FL + I++I + L
Sbjct: 67 WAKKIRPKLERASLDLKPSDYG--------SILFLGVVILFIGLHLMAGIESVWLSAIIS 118
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+++ VG ++++ + + + LL +G+SI Q LR V +++
Sbjct: 119 LVVVPVGS---NLFLRSRQHIYAQRMDSQLSEVCRLLSSAASAGLSIPQGLRLVVQEM-- 173
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
P+ E+ + E+ + + A + R ++ ALI R G + +
Sbjct: 174 -PAPVKIELGRVVREIELGRDLEGALNDLLERIHTQDMKVFINALIIQRRAGGDLAKVMS 232
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPM--IIFFLPVLILVIIGPAILSIIDTM 326
+ + +++ KA + + + II L +L + + T+
Sbjct: 233 QMAATMEERKIIHQTIKAVTSQARTSAYALPIISLLIAFMLSKMIDGFYDLFTTL 287
>gi|114797844|ref|YP_759873.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
15444]
gi|114738018|gb|ABI76143.1| putative Flp pilus assembly protein TadB [Hyphomonas neptunium ATCC
15444]
Length = 316
Score = 82.5 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 47/296 (15%), Positives = 107/296 (36%), Gaps = 29/296 (9%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+++ +L AV ++ R + + R + + T + + R D
Sbjct: 7 AIMAVGALFLAVQSVLSLVSDV--RTQQIVNRRLQFKDRYATHNEAMVELRKSRGLDQDG 64
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ + + +G + + + L + + I++ G
Sbjct: 65 ----------NLTMSLHWLNRLIVRSGLKFQ--PAKWAAMSLAGAAVAGVAAFIYLGGL- 111
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
A+ + V AP + I +L R + PDAL ++ +E+G
Sbjct: 112 ----------FAAIPVFFVVLVAAPILVIRHLAGARAKKLAAQLPDALQIVCRSLEAGHP 161
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ A+ VA ++ P+ E +T E+S+ + A + R V +
Sbjct: 162 VATAVSLVAREMPD---PIGTEFGMTADEVSYGMSLTNAVQRMAERAGDPDVELFAATVR 218
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ G ++ + L+ + R + M + +AAS +++ MI+ P +++ I
Sbjct: 219 LQEKTGGNLTELLKSNTNTIRERQTMRLKVRAASSEGRVSA-MILTSAPFIVMTAI 273
>gi|291333378|gb|ADD93083.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205]
Length = 529
Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P+ + V+ ++ ++ +PD L L + G+S+ A++ +A + L++E+
Sbjct: 264 YPASYYWERVENAKNEVEEKFPDFLRDLAEYWKGGLSMTVAIQTLAT---SEYGALNDEV 320
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+LS+ + F +R V+ A + ++DR G I D L +++R
Sbjct: 321 KKMSDQLSWGIKFSDVIKQFADRVGTPLVQRAIALIAEADRAGGKISDILVTAANDSREL 380
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ +E E+K ++G + V +F+ + ++V + +
Sbjct: 381 KFLEGERK-RAIGSYIAVIWTSYFVFLGVIVTLAVVFI 417
>gi|284991839|ref|YP_003410393.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284065084|gb|ADB76022.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 310
Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/260 (15%), Positives = 86/260 (33%), Gaps = 9/260 (3%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
R ++ L + + L G + + + V
Sbjct: 23 PAGPRRVPLARLDPTVAPPASALAGASAAAGAAVERVLARRGLVARGTAALERAGVAVP- 81
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++ ++ + + ++ V + +RQ++
Sbjct: 82 -LPDVVLLVGLATVVLGALGSLFGGLLLAVVFAAAAPLGTKVLLGLKRGRRQAAFADQLD 140
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D+L L+ + +G S+ +A+ V+ + P SEE + E + A +
Sbjct: 141 DSLQLMASSLRAGHSLLRAVDAVST---EAAAPTSEEFARIVNETRVGRDLGDALDEVAE 197
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R D R QA+ G ++ + L + R + + KA S KL+ +++
Sbjct: 198 RMDSDDFRWVAQAIGIHREVGGNLAEVLDTVGHTIRERNAIRRQVKALSAEGKLSA-VVL 256
Query: 305 FFLPVLILVII---GPAILS 321
LP I+ + PA L+
Sbjct: 257 MALPFGIVGFLSVTNPAYLA 276
>gi|255658707|ref|ZP_05404116.1| type II secretion system protein F domain protein [Mitsuokella
multacida DSM 20544]
gi|260849094|gb|EEX69101.1| type II secretion system protein F domain protein [Mitsuokella
multacida DSM 20544]
Length = 319
Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 44/313 (14%), Positives = 106/313 (33%), Gaps = 33/313 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+AI V F+L+ ++ + +R+ A + R++Q + + L
Sbjct: 4 LLAILITVFCFALLLGLLSIRSREDRVMTERLNYFAGGEQAQRQKQKLTPKA------LL 57
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + N + +L I ++ A + + ++
Sbjct: 58 YNCIEGIANGLGRLQQGK-----RIELMMQQADWPIRGTEFE--------------AILL 98
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G L+ + L+ + +VG + +++R+ D L ++
Sbjct: 99 LWGGLVGLVTFLVTLKGAMFFVGAFVGILMGFALLGLRIRRRRKKFTNQLGDMLTMVANA 158
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G S QA ++ ++ P+ E+ L + E++ + A +N R
Sbjct: 159 LRAGFSFMQAFELISREMD---APMGREVQLVVNEVNLGNTLESALDNMQRRVASPDFEL 215
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A++ + G + L + M E + +L+ +++ LP +
Sbjct: 216 VVTAVLIQRQVGGDLASILDTISETIAERVRMRREVMTLTAQGRLSG-IVLAILPFAMAG 274
Query: 314 IIG---PAILSII 323
I+ P L +
Sbjct: 275 ILTFIKPDYLKPL 287
>gi|331089203|ref|ZP_08338105.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405755|gb|EGG85284.1| hypothetical protein HMPREF1025_01688 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 425
Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 15/201 (7%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ ++ + I + S +K +K +P ++ + ++
Sbjct: 224 VIWAYGVQTRAYGILVMGIGFAVFVIISSSQKEKEEKKKEFREMKLDYPQIINKFNLYIK 283
Query: 196 SGISIDQALRRVAEDIGGQSVP-------------LSEEMLLTIAELSFLPNRQVAFENF 242
SG++I +A ++A + EEM+ + ++S + +E +
Sbjct: 284 SGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGASEGECYEEY 343
Query: 243 YNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + R L Q+ R GT + + L + +R A+K G KL +P
Sbjct: 344 GIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGEEAGTKLMIP 403
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+ + L ++ ++I PA SI
Sbjct: 404 LFL-MLIIVFAIVIVPAFFSI 423
>gi|326330148|ref|ZP_08196459.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
gi|325951961|gb|EGD43990.1| putative integral membrane protein [Nocardioidaceae bacterium
Broad-1]
Length = 298
Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 110/301 (36%), Gaps = 9/301 (2%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
+F +I + ++ LG L R+ + + + +A+ + + + L
Sbjct: 3 GLFVMIASGMLIGLGIALLIIRLMPAEPDLADAVARLTPARTGGAANPTVPSSQRERLGL 62
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIWIFGYDKL 141
+ + + SL +L+ I+ L++ ++ +F
Sbjct: 63 WAIRTLPPGLWARTPTRELALL-----RISLARFYGDKLLYGIVGLLIPPMLTMFFRVLG 117
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ P+ + + I + V F P+ + ++ + RA +DL+ + +G +
Sbjct: 118 FDLPYAIPLIGSIGLAVVMFFLPNYNAVDDAKRARLEFTRALGAYIDLVALERNNGSGVR 177
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
QA+ AE G S + A + + + + S
Sbjct: 178 QAMEAAAEV--GDSWVFTRLTEELARSRWSGVPPWEALRTLAEELGLPDLEDFADIMRLS 235
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
G S+ +LR R+ L + +A ++G ++++P + + V + +++ P++L
Sbjct: 236 GEEGASVYTNLRARSQAMRTAMLNDELTEANAVGERMSIPASLLGV-VFMALLLAPSLLR 294
Query: 322 I 322
+
Sbjct: 295 M 295
>gi|218663023|ref|ZP_03518953.1| putative tadC pilus assembly protein [Rhizobium etli IE4771]
Length = 145
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 74/138 (53%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L++C+++G+SI+ A RVA + + + + + E+ + A N R ++
Sbjct: 1 MLIVCLDAGMSIEAAANRVAREFVDKQQDFGLHLSIMMLEVRGGRRLREALANLATRLRI 60
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D R QS+ GTS+ +LRV E R R++ AE+KA +L K+ +P+ F P
Sbjct: 61 DEARALAVLFRQSEELGTSVTQTLRVYSKEMRDLRIVRAEEKANALPVKMLLPLGAFLFP 120
Query: 309 VLILVIIGPAILSIIDTM 326
V +++++ P ++ ++ +
Sbjct: 121 VSLIIVLVPIVIRVVSLL 138
>gi|148975966|ref|ZP_01812755.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
SWAT-3]
gi|145964711|gb|EDK29964.1| hypothetical Flp pilus assembly protein TadB [Vibrionales bacterium
SWAT-3]
Length = 300
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 7/203 (3%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++L R + I I G + Y + +L F ++
Sbjct: 61 PTLMVLGPRSTLYIALYITGSLIASWYIVIDLLSMTNSWWVPVLAVIFSFFGYRFLVT-- 118
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+R+ + +PDAL++L+ V +G S+ QA+ V E + P+ E L L
Sbjct: 119 --RRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEVMDN---PIGREFKLMGDRLKL 173
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ +V + T L + G + L L+ R +E +K A
Sbjct: 174 GESPEVVLKRSCKNYPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233
Query: 292 ASLGPKLTVPMIIFFLPVLILVI 314
+ +++ ++ V ++++
Sbjct: 234 MTSEARISAKIVAAIPLVFMIIL 256
>gi|304314056|ref|YP_003849203.1| hypothetical protein MTBMA_c02820 [Methanothermobacter marburgensis
str. Marburg]
gi|302587515|gb|ADL57890.1| putative membrane protein [Methanothermobacter marburgensis str.
Marburg]
Length = 359
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/268 (14%), Positives = 93/268 (34%), Gaps = 4/268 (1%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ S + S L+ D + A
Sbjct: 63 SRRGSARVISRMKMTPEEIEVFKGLIEADKRLEERGEDSATRESFQRASLEEILKEEEKE 122
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + +I + +L + ++ + ++ + ++ + KR S
Sbjct: 123 QLDPKLIMILGGGSGAVLLIVMVVLGFGIEIGLAMMLAVLFMAIII-IFLPNLQKGKRSS 181
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
R P AL + ++SG+ + ++R VA LSEE T+ E+ + +
Sbjct: 182 EASRELPFALRQMATELKSGLGLHDSMRSVA---MSGYGALSEEFARTLEEIKYGETTES 238
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A NR + D ++ A + ++ G + +L V+ + E M+ + + L
Sbjct: 239 ALIEMSNRIESDGLKRAVYQITRTLNSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNSF 298
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ M + L +I +++ A +++ +
Sbjct: 299 TMIYMFLAILGPVIFLVMLLAASTVMGS 326
>gi|167463709|ref|ZP_02328798.1| type II secretion system protein [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 288
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 4/270 (1%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
+RK +I S + + V+K L ++ +G
Sbjct: 20 IRKTEIYGAGAGIGLSLRCRLTAPAFLIIVEKGKLLDRFSYLHVRLMQLISGVYGPRQQA 79
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
I V + + + + L + + G + ++K
Sbjct: 80 IRTKYYAVEMLSLSFIVLAGFILLGLVSGEGPVLVIFGLAGAGITPALLFRT-LDQKLKK 138
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS-VPLSEEMLLTIAELSFLP 233
++ SI P+ L+ +++ V++G ++ + R +D + PL E++ EL
Sbjct: 139 KKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIKCKRELLMNV 198
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAA 292
+ + R M + T ++ + + G + +LR L + R +
Sbjct: 199 SLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERRKAVSRILGE 258
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
KL PM + FL V+++V PA++ +
Sbjct: 259 EASSKLVFPMALIFLIVIVIVA-APAMMMM 287
>gi|84685157|ref|ZP_01013056.1| Putative Flp pilus assembly protein TadB [Maritimibacter
alkaliphilus HTCC2654]
gi|84666889|gb|EAQ13360.1| Putative Flp pilus assembly protein TadB [Rhodobacterales bacterium
HTCC2654]
Length = 316
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 57/312 (18%), Positives = 115/312 (36%), Gaps = 33/312 (10%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ +++ +L + +V+ + +R+ Q
Sbjct: 8 ALLIGLAVLALCLIGAAVWQVRRPADD-----SVQLDRMRRMQAGGDAGTG--------- 53
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
LR V++ L + + I ++R AG ++ L+LG +
Sbjct: 54 -DRLRKLVERTALDGLPILGTIPVRMRRAGMTLSPNV--------------LVLGSALVT 98
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L+ A ++ VG P++ IS KR ++ R PDALDL+ +
Sbjct: 99 SLLFLVLQGVIGAGLAFVVAVGVGVLVPTLVISTAALKRADALTRQLPDALDLMKRGLSV 158
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G ++ +R VA + P++ E + ++++ + A ++ R ++ +
Sbjct: 159 GHPLNVTIRNVATTLPD---PIAAEFRILADQVAYGDSLTDAVDDLARRIDIEDFHYLSA 215
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A+ G ++G L L R M A S ++T +I+ +PVL+ V
Sbjct: 216 AVQIQHATGGNLGAMLETLARVIRGRFAMRRRVSAVSSEGRITA-IILSAMPVLMYVGTS 274
Query: 317 PAILSIIDTMKD 328
++KD
Sbjct: 275 LTAPEYYASVKD 286
>gi|254486637|ref|ZP_05099842.1| type II secretion system protein [Roseobacter sp. GAI101]
gi|214043506|gb|EEB84144.1| type II secretion system protein [Roseobacter sp. GAI101]
Length = 317
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/309 (12%), Positives = 98/309 (31%), Gaps = 35/309 (11%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRM-KSVAVEREILRKQQITSLQKDS 67
L + ++ ++ V+ R+ ++ E+ L + + +
Sbjct: 1 MSTITLLLLAGFGLNAGLILLGFVLADRQRHRHISRLLRADTTEQPPLAQSLKPRKRAVA 60
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ R + + + +L + + L AG ++
Sbjct: 61 QPTNPLERVIAFIERQLDQTSLGFGVGEV-----LVQAGI----------------TLLG 99
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + G L P + +L+ +S + +++ P+AL
Sbjct: 100 LYAVAVLAVGIHPLAALPLAAMLTVALLLSI---------LSIAQSRYKATFAADLPEAL 150
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D+ + +G + ++ A + P+ E E+ E R
Sbjct: 151 DIFARGLRAGRPVTDSM---AIVVDNAKGPILREFTRCHDEVRMGNTLPETLERLSARLP 207
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V A G ++ +++ L ++ R R + + +A S + + +I+ L
Sbjct: 208 LPEVTFFAVATALQAETGGNLIETMENLATQLRERRKLRKKARALSSEARASA-VILAAL 266
Query: 308 PVLILVIIG 316
P + V+I
Sbjct: 267 PFAVAVLIA 275
>gi|323529157|ref|YP_004231309.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323386159|gb|ADX58249.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 282
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 79/200 (39%), Gaps = 5/200 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + ++ + + P + + +KR +I++ PDAL
Sbjct: 56 AAAWSMLVIVGLPVVVLLLSGSLLIAAASIPIAMMLPRKYFKRMHKKRVEAIEKQLPDAL 115
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +G S AL V + P+S+E L + E+ + +A N R
Sbjct: 116 LMMSGALRAGASFPTALEAV---VHETPPPISQEFDLLMREIRLGIDLDIAMRNVEKRIP 172
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ T A+ + G ++ ++L + R + ME + KA + ++ ++
Sbjct: 173 IPDFLMMTAAVTIAREVGGNLAEALESVARTLREKLTMEGKIKALTSQGRMQGIVMTCLP 232
Query: 308 PVLILVI--IGPAILSIIDT 325
L+LV+ + P ++ + T
Sbjct: 233 LFLMLVLRFMEPKAMAPLFT 252
>gi|148657457|ref|YP_001277662.1| type II secretion system protein [Roseiflexus sp. RS-1]
gi|148569567|gb|ABQ91712.1| type II secretion system protein [Roseiflexus sp. RS-1]
Length = 335
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 103/319 (32%), Gaps = 28/319 (8%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
D + A + + L R V +
Sbjct: 12 TMDVPVSLEFALPIGAALLASLASLTLLFAARSLATRDTGVDSRISAYLGGDDVARGATL 71
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
R+ R + ++ I + L AA ++ +++R+ VP+I
Sbjct: 72 NDQRIAERLNDVIKR---------QSFAARIEHDLAAASLP--LTVPEYMLMRIAVPLII 120
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L ++ +V V G S W+ Q+R+ P+ L
Sbjct: 121 TALALL------------IWRQVIVVPAALIAGHLGCSFWMRMRRQRRKQEFNDQLPETL 168
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DL+ + G S+ Q+L VA D+ P E+ E+ + A +N R +
Sbjct: 169 DLITASMRGGFSLVQSLASVASDVQE---PTRTELRRVFQEVQLGLSVTQALDNLVQRME 225
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IF 305
+ A+ R G ++G L + + R + E + + +++ +I +
Sbjct: 226 SADLDLVVTAIKIHARVGGNLGQILENISTTMRERAKLRREVRVITSMQRISSYVIGALP 285
Query: 306 FLPVLILVIIGPAILSIID 324
F LI+ I P + +
Sbjct: 286 FALALIIFTINPTYMMRLF 304
>gi|281356957|ref|ZP_06243447.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316515|gb|EFB00539.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 294
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 7/214 (3%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ +L + L + +I+ II + + Y ++ + + G V F P + +
Sbjct: 52 QMPARRVLDLSLALATSGIIISIILMSTLVE--GYSWKWGIFVALFFGVVLFLLPRLVLR 109
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
L +R DAL ++ +++G SI+QAL VAE P+S E L I E+
Sbjct: 110 QLKVRRLEKFNFQLEDALGVISSSLKAGFSINQALEEVAEQ---NIHPISVEFRLLIQEI 166
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A EN R + + A++ + + G + +L + S R + +
Sbjct: 167 RLGVPVEQALENMNRRLRSEDFELVATAILTARQTGGELTGTLERVASLIRERVRISNKV 226
Query: 290 KAASLGPKLTVPMIIFFLPVLILVI--IGPAILS 321
+A + +L +I L++ + I P ++
Sbjct: 227 RALTALGRLQAILIALTPVALLIGLWWINPVMIR 260
>gi|149175457|ref|ZP_01854078.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
gi|148845725|gb|EDL60067.1| putative tight adherence tadb-related transmembrane protein
[Planctomyces maris DSM 8797]
Length = 285
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 4/200 (2%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGI-IWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
+ G R + L++ + +IL + + L + Q + + VG
Sbjct: 31 KQLGNRLNGGFDELIIHSGLDANPGVILFLCLMTATLAGGLIFILQENFLSTSIAFMVGG 90
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
AP ++ +RQ+ I D +D L ++G S+ VAE PL +E
Sbjct: 91 MAPIGYLIFSRSRRQNKINDQLSDMIDELARAAKTGRSLTHCFINVAEK---TPAPLGDE 147
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ L + + A + Y RT + + + ALI G + L L R
Sbjct: 148 LKEASRRLQMGVSMKAALDGLYERTGVASLNILSMALIVHQETGGDLVKVLERLARTIRD 207
Query: 282 ERLMEAEKKAASLGPKLTVP 301
L + A+ G + T
Sbjct: 208 RVLFLGRLRTATAGSRATAV 227
>gi|153815435|ref|ZP_01968103.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
gi|145847294|gb|EDK24212.1| hypothetical protein RUMTOR_01670 [Ruminococcus torques ATCC 27756]
Length = 425
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 15/201 (7%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ ++ + I + S +K +K +P ++ + ++
Sbjct: 224 VIWAYGVQTRAYGILVMGIGFAVFVIISSSQKEKEEKKKEFREMKLDYPQIINKFNLYIK 283
Query: 196 SGISIDQALRRVAEDIGGQSVP-------------LSEEMLLTIAELSFLPNRQVAFENF 242
SG++I +A ++A + EEM+ + ++S + +E +
Sbjct: 284 SGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGASEGECYEEY 343
Query: 243 YNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + R L Q+ R GT + + L + +R A+K G KL +P
Sbjct: 344 GIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGEEAGTKLMIP 403
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+ + L ++ ++I PA SI
Sbjct: 404 LFL-MLIIVFAIVIVPAFFSI 423
>gi|292655192|ref|YP_003535089.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291371902|gb|ADE04129.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 707
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 52/321 (16%), Positives = 113/321 (35%), Gaps = 17/321 (5%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
D + + ++ F + + + E R+ T
Sbjct: 316 LADTLTLIRIVGYVGIPLASFGFVVYIDSITESLRGAAVADDGADTAAESARRIDATGGV 375
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ ++ D++ + L A + N L + +V
Sbjct: 376 GSAPATDGGETDARGDPWRANRERLAAYDRLRALRNWFER--------PLDTLGRKPLVA 427
Query: 125 IIFLI-LGIIWIFGYDKLLEYPFQLRVGAVI----LIGYVGFCAPSVWISNLVQKRQSSI 179
+ + LG++W+ + P L V + + +G L ++R +I
Sbjct: 428 LALTVPLGLVWVALRATIPADPTILGVADAVDEHVVEAAIGSLVVVSAFHELRKRRIRAI 487
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+R+ PD LD L E+G+++ Q+LRRV+ PL +E+ + ++ + + Q A
Sbjct: 488 ERSMPDFLDRLASVNEAGLTVVQSLRRVS---ASDLGPLGDEVERAVRDIDWGADAQTAL 544
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
RT V + + + + LR+ +E + R + A ++ + L
Sbjct: 545 RRMDRRTASPMVSRSVTLITNAMSASGDLAPVLRIAANEAQDSRRL-ARERNQEMLTYLL 603
Query: 300 VPMIIFFLPVLILVIIGPAIL 320
V I F + + I+ + + +
Sbjct: 604 VIYISFLVFLGIIAALTVSFI 624
Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/202 (12%), Positives = 64/202 (31%), Gaps = 3/202 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L I L L+ + ++ + R S I+ P
Sbjct: 120 LGGLTSIQALPLRDLFLALLLSSATLGTLLALGVYWGRWYVLTERARTRSSEIEATLPRT 179
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ + SG+ Q L +A + + E+ + + ++ + + + R
Sbjct: 180 VAFVFALSRSGMPFPQVLETLARN-EAIYGEAAREVSIVVRDMDAFGTDVLSSLQTMATR 238
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM-II 304
T + + L G ++ L+ + E + ++ L V + ++
Sbjct: 239 TPSPSLEEFAENLASVLGSGRNLSSFLQEQYERFQEEAEAQQQQYLDLLSTFAEVYVTVL 298
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
P+ + ++ L + DT+
Sbjct: 299 VAGPLFFITVLVVIGLVLADTL 320
>gi|317500897|ref|ZP_07959108.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897695|gb|EFV19755.1| hypothetical protein HMPREF1026_01051 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 425
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 15/201 (7%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ ++ + I + S +K +K +P ++ + ++
Sbjct: 224 VIWAYGVQTRAYGILVMGIGFAVFVIISSSQKEKEEKKKEFREMKLDYPQIINKFNLYIK 283
Query: 196 SGISIDQALRRVAEDIGGQSVP-------------LSEEMLLTIAELSFLPNRQVAFENF 242
SG++I +A ++A + EEM+ + ++S + +E +
Sbjct: 284 SGMTIRKAWFKIAGEYEKDQKEKEQISAKACGRKKAYEEMVNVMYKISGGASEGECYEEY 343
Query: 243 YNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + R L Q+ R GT + + L + +R A+K G KL +P
Sbjct: 344 GIRCNLSEYRKFGMMLSQNLRKGTRGLTELLEREAEDAFEQRKNLAKKAGEEAGTKLMIP 403
Query: 302 MIIFFLPVLILVIIGPAILSI 322
+ + L ++ ++I PA SI
Sbjct: 404 LFL-MLIIVFAIVIVPAFFSI 423
>gi|52425831|ref|YP_088968.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
gi|52307883|gb|AAU38383.1| MaoC protein [Mannheimia succiniciproducens MBEL55E]
Length = 293
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 6/209 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
F++ + ++L +I F + L ++ + + V F
Sbjct: 48 FKTALWKYYFTAGNERNLLRNVLLTLIIFFFFHTLNYLYIKVDKFIFLGVFLVLFFIIVW 107
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + + +P+ + +L SG + QAL R +DI GQ + EE
Sbjct: 108 KLGQRRNR--KEFEEMFPEVIQILNSATSSGAGLLQALERCGKDISGQ---IGEEFTAIH 162
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L+ + FE+ Y+R + + G + + + L + ME
Sbjct: 163 KRLAIGEDANSVFEDSYSRYPYKEYYFFITIIRVNLDKGGQMREVILRLGRVIADSKKME 222
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
+K A + +++ MI+ PV + +
Sbjct: 223 KKKSAMTSEARMSA-MIVASFPVAFFIFM 250
>gi|197106492|ref|YP_002131869.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
gi|196479912|gb|ACG79440.1| Flp pilus assembly protein [Phenylobacterium zucineum HLK1]
Length = 319
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 7/154 (4%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ +R +++ P AL++++ +E+G + A+ V ++ P+ E + E
Sbjct: 134 KFVAGRRAAALGFQLPQALEIIVRSLEAGHPVPTAIALVGREMSD---PVGTEFGMAADE 190
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+++ N + A E R Q V + +R G ++ L++ S R M +
Sbjct: 191 IAYGANLEQAIERMAERCQHPDVDLFAATVRLQERTGGNLTGLLKLNASTIRERHKMRLK 250
Query: 289 KKAASLGPKLTVPMIIFFLPVL---ILVIIGPAI 319
KAAS + + MI+ P + +++II P
Sbjct: 251 IKAASAEGRASA-MILSAAPFIAVGMIMIISPKF 283
>gi|251789650|ref|YP_003004371.1| type II secretion system protein [Dickeya zeae Ech1591]
gi|247538271|gb|ACT06892.1| type II secretion system protein [Dickeya zeae Ech1591]
Length = 325
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 71/206 (34%), Gaps = 6/206 (2%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AA + + ++ L ++ + P + +
Sbjct: 77 LAAVWWQQVEFIGWQQTLRKRVMMLFALCLVVGMAIGRRTPMPLTSGLLFSFALTVA--- 133
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
++ + +QK ++ + PDA+D + +G+ + +VA + S PL+ E
Sbjct: 134 IGAMLFRSTLQKHLHQLRESLPDAIDAITRSCRAGVPVANTFGQVAAHL---SGPLANEF 190
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L L + + R M R LI + G +G++L L + R
Sbjct: 191 RLIDHWLKLGVPLRQVIQTSAGRVPMAEYRFFVVILIINQEAGGRLGETLERLSATLRQR 250
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLP 308
R + + ++ + + + ++ P
Sbjct: 251 RELALKVQSKTSEARASAKIVAALFP 276
>gi|87310970|ref|ZP_01093095.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
gi|87286260|gb|EAQ78169.1| hypothetical protein DSM3645_15370 [Blastopirellula marina DSM
3645]
Length = 317
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/322 (15%), Positives = 103/322 (31%), Gaps = 34/322 (10%)
Query: 9 FDATELAVAITTAVSIFSLIYAVV-IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ L + SI S+ + V + + R+K + R
Sbjct: 3 ISSVMLFTFVGVTFSIVSIGWIVYDLFFSVRHRADDRLKDAFYDEMRSRSNAS------- 55
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
+ L N + + L +G S+ + ++ L + +
Sbjct: 56 -------PLLRELSNANAGFTFNSRSLTTRFKTWLEQSG--SQLTPRDFVLSSLCLAALG 106
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +G + P+ I + +R + + P+A
Sbjct: 107 GGGIFYVTNSFFLAP-------------LGMIAGLLPAACICHRRLQRTEMLTQQLPEAF 153
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ + +G + A++ VA D PLSEE + +VA + R
Sbjct: 154 SAISRALRAGQGLPTAIQMVANDF---PKPLSEEFTHYYEQQHLGVANEVALRDMVRRVD 210
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +R ALI R G ++ + L+ L R + KA + ++ +++ +
Sbjct: 211 VMELRIFAVALIVQQRAGGNLAELLKKLADLIRKRVKLRRRVKALTGEGRMQA-VVLIAM 269
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
PVL+L + + +H
Sbjct: 270 PVLVLAALAVVAPDYSSVLWEH 291
>gi|326205013|ref|ZP_08194863.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
gi|325984818|gb|EGD45664.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
Length = 296
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/199 (22%), Positives = 92/199 (46%), Gaps = 4/199 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ L L I L +Y + L G + ++N V+KR+ I+ +P
Sbjct: 95 IVLLALIIPVELLVGILSDYQAAFNIYITFLFG-LMLVLDDTILTNKVKKRRLEIQLEFP 153
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D ++ L + + +G+++ +A +++ D S +E+ T+A+L + AF F
Sbjct: 154 DFINKLTLLLNAGLTMSKAWEKISLDSKKVSA-FHKEVKKTVAQLKTGVSEAEAFGEFAK 212
Query: 245 RTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + +IQ+ + G + +L++ +E+ R + KL PM+
Sbjct: 213 RLKTPEISRVMSIIIQNSKKGGYDLVMTLKLQSNESWEIRKNAVRRLGEEASTKLLFPMM 272
Query: 304 IFFLPVLILVIIGPAILSI 322
I F ++I+V + PA++S+
Sbjct: 273 IMFFAIIIIV-VTPALISM 290
>gi|160935910|ref|ZP_02083284.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
BAA-613]
gi|158441152|gb|EDP18869.1| hypothetical protein CLOBOL_00803 [Clostridium bolteae ATCC
BAA-613]
Length = 245
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 84/201 (41%), Gaps = 7/201 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L G L Y F V +++ VG C P SNL ++R ++ + + +
Sbjct: 14 LLYGALGVGACGLASYVFYRSVVVFLILMPVGACYPLYRRSNLKKERARRLELQFKEGIQ 73
Query: 189 LLLICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L + +G S++ L +++ G+ ++EE + + + F +F R
Sbjct: 74 VLSSFLSAGYSLENGLTLSIKELEILFGRREMITEEFRILSDGIRMNRPAEELFMDFGRR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ V N Q L + R G + + +R R + ++ E ++ I+
Sbjct: 134 SGVEDVDNFAQVLSAAKRSGGELVEIIRQTAGIIRDKVQVKEEIHTMLAS-RIFEQRIMN 192
Query: 306 FLPVLILVII---GPAILSII 323
+P LI++ I P S++
Sbjct: 193 LIPFLIVLYIDLTSPGFFSVM 213
>gi|163801673|ref|ZP_02195571.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
gi|159174590|gb|EDP59392.1| hypothetical Flp pilus assembly protein TadB [Vibrio sp. AND4]
Length = 300
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 77/191 (40%), Gaps = 11/191 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I W + LL + V +L+ +G+ LV+KR+++ + +PD
Sbjct: 78 ITGSFIASWYIVFKLLLFSNIFIVVALSVLLTVLGY-------RYLVKKRRTNFENTFPD 130
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L+ + +G S+ QA+ V + + P+ E L L +V +
Sbjct: 131 ALNILMSAITAGDSLMQAISYVGDVMND---PIGVEFKLMGDRLKLGETPEVVLQRSCKN 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L + G + L L+ R ++ +K A + +++ I+
Sbjct: 188 YPYPEFLFFAVTLRANIARGGQLKGVLARLIRVLVDARTLDKKKMAMTSEARISAK-IVA 246
Query: 306 FLPVLILVIIG 316
+PV+ ++I+
Sbjct: 247 AIPVIFMIILN 257
>gi|309777429|ref|ZP_07672387.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308914825|gb|EFP60607.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
3_1_53]
Length = 201
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/190 (18%), Positives = 81/190 (42%), Gaps = 4/190 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ + + IL+ ++ F + IS++++KR I R P
Sbjct: 7 AGTALLVIPITLILYGLLQNAVVIVLFILLEFLAFYYFQMQISDVMKKRDMEISRDLPSI 66
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ + + V +G+ + +A +VA+ L +EM + +++ + A+ +F R
Sbjct: 67 ISKITLLVNAGMVLREAWAQVAQTGDTT---LYKEMQRAVEDMNNGMSEVDAYMDFSQRC 123
Query: 247 QMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
Q VR + Q+ G + L+ +E+ ++ + K+ +P+ I
Sbjct: 124 QSAKVRKFISTVEQNVSKGNKDLVAYLKEQSQIAWTEKKEYVRQQGETASSKMLIPIGIM 183
Query: 306 FLPVLILVII 315
F+ +LI+VI+
Sbjct: 184 FVGILIMVIV 193
>gi|197336186|ref|YP_002155273.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
gi|197317676|gb|ACH67123.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
Length = 305
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 7/183 (3%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + + + G V++ G VW+ +K +PD
Sbjct: 80 LVFSVCVFALIGLLINRSMIHASPYIVVLISIVAGLIWGYVWLQEREKK---QFNERFPD 136
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L V +G SI A+ V + + G + +E + L + F+ R
Sbjct: 137 ALNMLSSAVSAGESITHAIAFVGKKLEG---DVGKEFKIMGERLQLGESPDEVFKKSCVR 193
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R L + G + D + L R +E +K A + +++ I+
Sbjct: 194 FPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALTSEARISAK-IVC 252
Query: 306 FLP 308
P
Sbjct: 253 ATP 255
>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040399|gb|ACT57195.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 187
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 69/159 (43%), Gaps = 7/159 (4%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ +L++KR + +P+ALD+++ V +G+ + A+ A +G S P+ E I
Sbjct: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAV---AVIVGQSSDPVRSEFRRVIE 57
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + + V + + + G ++ ++L L R + M+A
Sbjct: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKA 117
Query: 288 EKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
+ +A S+ K + II LP ++ P ++++
Sbjct: 118 KVQALSMEAKASA-WIIGSLPFCVSTLVYFTSPGYMNVL 155
>gi|168069635|ref|XP_001786522.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162661100|gb|EDQ48667.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 200
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 6/199 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW---ISNLVQKRQSSIKRAWPD 185
+L W+ L +I+ G + F P+ + V KR I +
Sbjct: 1 MLCYSWLMLMLGCLLTLAAGGNTGLIIGGLLAFLLPAATIKDLHTKVDKRDQDITIELAE 60
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQ-SVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L+ +++ V +G ++ +A+ R A Q PL +E++ I +L + Q +FENF
Sbjct: 61 LLNKIVLLVGAGETVQKAITRCARQKEAQRDHPLYKELIRMIDDLEGGYSFQQSFENFSK 120
Query: 245 RTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + V T A++ + R G +L L +R + KL PM+
Sbjct: 121 RCAVQEVSAFTTAVLLNLRRGGSDFAMALNDLSRGLWEKRKAITRTRGEQASSKLVFPMM 180
Query: 304 IFFLPVLILVIIGPAILSI 322
+ F+ V++LV PA + +
Sbjct: 181 VIFMIVIVLVG-TPAFMMM 198
>gi|319951072|ref|ZP_08024925.1| type II secretion system integral membrane subunit [Dietzia
cinnamea P4]
gi|319435232|gb|EFV90499.1| type II secretion system integral membrane subunit [Dietzia
cinnamea P4]
Length = 314
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 59/322 (18%), Positives = 106/322 (32%), Gaps = 43/322 (13%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ V+I L + + P+ E+R A +L + +
Sbjct: 1 MIASLFSPAAFGLAAVTVAIAVLTFLALAPARNHIPRERRRPDQAAGPGLLNRTATALTE 60
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ R R +L AG R L + + +V
Sbjct: 61 AIDSLLRRRGTTGAG---------------------QLERAGVRMG--LQDYVFLVVVAT 97
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ LG+I I + V +L G+ + L +R+++
Sbjct: 98 IVAFALGLILIGPL---------MGVFLALLAPAGGYVL----LQVLAARRRAAFADQLD 144
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D+L L+ + +G S+ QAL VA P SEE I E A E N
Sbjct: 145 DSLQLMASSLRAGHSLLQALASVAR---EAEQPTSEEFARIINETRVGRELAPALEETAN 201
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R TQA+ + G ++ + L + R + + +A + KL+ ++
Sbjct: 202 RMGSQDFVWVTQAIAINREVGGNLAEVLDGVGHTIRERNQIRRQVQALAAEGKLSA-YVL 260
Query: 305 FFLPV---LILVIIGPAILSII 323
LP L + P+ + ++
Sbjct: 261 MALPFGIGGFLFVSNPSYIGVL 282
>gi|121607250|ref|YP_995057.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
gi|121551890|gb|ABM56039.1| type II secretion system protein [Verminephrobacter eiseniae
EF01-2]
Length = 290
Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 78/200 (39%), Gaps = 4/200 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L L + + LL + + + P + + ++R + PDAL
Sbjct: 64 LFLANLAVMALGGLLVWLISGSELLALPAFFALGLLPRLLYRQMRKRRLRKFEEQLPDAL 123
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L + +G+ + A+ A+ + PLS+E L + E + A N +R
Sbjct: 124 MMLSGGLRAGLGLSSAM---AQLVAESGPPLSQEFSLMLREQRLGVTLEQALSNLNHRMP 180
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
T A+ ++ G + ++L + RS M+A+ A + KL ++ L
Sbjct: 181 TQTTVLITSAMRIANETGGGLAETLERTSATIRSRLRMQAKIGALTAQGKLQA-WVVGAL 239
Query: 308 PVLILVIIGPAILSIIDTMK 327
P+ +++I+ + +
Sbjct: 240 PIALMLILNEMEPQAMSMLW 259
>gi|328884728|emb|CCA57967.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 315
Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/308 (13%), Positives = 96/308 (31%), Gaps = 35/308 (11%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+T V++ + +V L + +R + + + T ++ R
Sbjct: 9 LTIGVALLCCVLGIVGIQLYASG-ARRHAELVARLDESGAPEGTGRRRRRFQGVDRRVRR 67
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+L + ++ A G + + V + ++G
Sbjct: 68 TALGR--------------KLELRIAATGL--DTTPGEFTVALAATVAVLWVVG------ 105
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L + G +G ++ QKR P+ +L ++G
Sbjct: 106 -------QAALSPFFGPICGLLGIWVAMGYLGWQRQKRIEKFINQLPELSRILANATQAG 158
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+++ AL A+++ P +E+ +L+ + A R +
Sbjct: 159 LALRMALSLAADEME---APAGDELEKVAQQLAVGTSLDDALGELAERLPSRELVVLVTT 215
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI--I 315
L+ ++R G ++ SLR L + E + +T + +L+I +
Sbjct: 216 LVLANRAGGTVVSSLRNLTETLEERKETRREVRTQLSQVSMTAYSVPVIGVGSLLLIDNM 275
Query: 316 GPAILSII 323
P L +
Sbjct: 276 QPGALDRM 283
>gi|282865304|ref|ZP_06274356.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282559777|gb|EFB65327.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 312
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/321 (14%), Positives = 98/321 (30%), Gaps = 41/321 (12%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
D + V + + ++ L RM R ++ + +
Sbjct: 1 MDNLPLLTIGVTLLAGLFAVLGVHGYTAGRAQRQLLFDRMSQTGQITVGGRTRRFRGIDR 60
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
L+ + + I K+ + G + VV ++ +
Sbjct: 61 R----------------------LRRTALGKRIERKIASTGLDLTPGEYAVYVVAALLAL 98
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
F++ + F +L +G + +++ KR + P+
Sbjct: 99 YFVVGSVFAPFF---------------GLLAALIGLWGGNAFLNWQRGKRTEAFINQLPE 143
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L ++G+++ A+ E++ P EE+ L+ + A R
Sbjct: 144 LTRVLANATQAGLALRTAIGMAVEELDN---PAQEELRRVADRLAVGHSLDDALNELVER 200
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ LI S+R G +I SLR L + E K+T +
Sbjct: 201 LPSRELTVLVSTLILSNRAGGTIVSSLRNLTETLEERKETRREVTTLLSQVKVTAVAV-P 259
Query: 306 FLPVLILVIIGPAILSIIDTM 326
L + L+II +D M
Sbjct: 260 ILGLGFLLIINGMRAGALDDM 280
>gi|253576286|ref|ZP_04853617.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844413|gb|EES72430.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 291
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/301 (20%), Positives = 109/301 (36%), Gaps = 14/301 (4%)
Query: 24 IFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNF 83
++ ++ +++ L G L KS + R L + L + +
Sbjct: 1 MYLVVSGLLLFVLSGGWLYAYQKSRFLYRGDLDLHLEGLKLVRLSPPMLLLLERIKVSQR 60
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
K + I RS + L L I L+ G + D
Sbjct: 61 FPGFFFKVQRAVQKIGGS-----RRSREMTLLWLSEALTYSYICLLFGCLMTLLSDG--- 112
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+G +L + A + VQ+R+ ++ P+ L+ +++ V +G ++ QA
Sbjct: 113 ---PAGLGIGVLFAVLVPMALLNDLHRKVQRREQAVLLELPELLNKIVLLVGAGSTVQQA 169
Query: 204 LRRVAEDIGGQSV-PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
++ E Q PL E+L E + Q A E F R + V T A++ +
Sbjct: 170 MKLCLERKREQIGHPLYRELLQMQKEWEGGDSFQQAMEGFSKRCGIQEVSAFTTAVLLNY 229
Query: 263 RYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R G +LR L +R KL PM++ F+ VLILV PA +
Sbjct: 230 RRGGEDFALALRDLSHSLWEKRKAVGRTLGEQASSKLVFPMVLLFMAVLILVG-APAFMI 288
Query: 322 I 322
+
Sbjct: 289 M 289
>gi|154482609|ref|ZP_02025057.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
27560]
gi|149736509|gb|EDM52395.1| hypothetical protein EUBVEN_00276 [Eubacterium ventriosum ATCC
27560]
Length = 478
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 74/180 (41%), Gaps = 9/180 (5%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++ F + + V+KR ++ +P+ L +L+ +G+SI ++ R+
Sbjct: 298 IVAFIMCVAVFFLKDRDLKSEVKKRNIQLQFDYPEILSKILLYSNAGLSIKSSIERIVRQ 357
Query: 211 IGG-------QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ EE+ + ++ + A + R + + Q+ R
Sbjct: 358 YEDEKKKNPKEYHYAYEELKMATVKMKSGVSEINAINQYGERCGLHNYIKLANIIEQNIR 417
Query: 264 YG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + +L ++ ER A K+ + + KL PM + L V +++++ PA++SI
Sbjct: 418 RGTGELSFALENELNRALVERKNTALKRGSEISTKLLGPMTV-MLIVALVILMVPALMSI 476
>gi|222834143|gb|EEE72620.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 17/187 (9%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L ++ + L +G S +S+ +F G++ + + P L
Sbjct: 5 LMSVPRIGALDRWLEQSG--STWSVAQ----------LFGYCGLVVLCAVALIPLVPVPL 52
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + + P + + L KR ++ PDA+D++ + +G S AL V
Sbjct: 53 PIILGCMAFV--WLLPFLHVMRLRTKRLKQMEVQLPDAVDMISRALRAGHSFAGALGMVG 110
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++I PL E T E+++ A N R + +R A++ G ++
Sbjct: 111 QEIK---APLGPEFRTTFEEINYGVALDEAMTNLAMRVPVGDLRYFVIAVLIQRESGGNL 167
Query: 269 GDSLRVL 275
+ L +
Sbjct: 168 AEILDTI 174
>gi|326205012|ref|ZP_08194862.1| Flp pilus assembly protein TadB-like protein [Clostridium
papyrosolvens DSM 2782]
gi|325984817|gb|EGD45663.1| Flp pilus assembly protein TadB-like protein [Clostridium
papyrosolvens DSM 2782]
Length = 247
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 79/197 (40%), Gaps = 5/197 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
P+ +L + + Y F + ++I G C ++ KR+ + +
Sbjct: 10 PLQLKLLYALSAAAVVFAVSYMFYRSIVISVIISPSGICYLRYKRKQIIYKRKRELNLQF 69
Query: 184 PDALDLLLICVESGISIDQ----ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
D L L + +G +++ AL + + E + I +LS + + A
Sbjct: 70 KDLLISLASSLSAGKPLEKSFVGALSDLYVLYPSDDAHIVRETKIIINKLSLNVSIEDAI 129
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F +R+ +D ++N + +I R G ++ ++++ + M+ E + L +
Sbjct: 130 SEFADRSDIDDIKNFSDVIIICKRTGGNLVEAIKNSSRIISEKIEMKQEIETL-LSSRRF 188
Query: 300 VPMIIFFLPVLILVIIG 316
I+ +P+ ++ I+
Sbjct: 189 EQKILNIMPIAMIFILS 205
>gi|119773847|ref|YP_926587.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
gi|119766347|gb|ABL98917.1| putative type II secretion system protein F [Shewanella amazonensis
SB2B]
Length = 283
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 4/189 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L L + F IL+ + P L Q+R+ PDAL
Sbjct: 57 LFLLNVLTLVSVPFFGRLFFGSWVVGILLSVLLALLPRYLYRYLHQRRRRRFVHQLPDAL 116
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+++ +++G ++ A+ +A+++ P+ +E L + E A +N Y R
Sbjct: 117 NMIAASMQAGANVTNAIEFMADEMD---APIKQEFQLFLREQRLGVEFNTALDNVYKRIP 173
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + S G ++ + L L R + ME + + + K+ +++ L
Sbjct: 174 ESEFQLVVAGMQISRDVGGNLAEVLVRLSETLRKKIEMEGKITSLTSQGKMQG-IVMTLL 232
Query: 308 PVLILVIIG 316
PV I +
Sbjct: 233 PVAIGFTLY 241
>gi|59711124|ref|YP_203900.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
gi|59479225|gb|AAW85012.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio fischeri ES114]
Length = 305
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 7/183 (3%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + + + G V + +G VW+ +K +PD
Sbjct: 80 LVFSICVFALIGLLINRSMIHASPYIVVFIAIVIGLIWGYVWLQEKEKK---QFNERFPD 136
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L V +G SI A+ V + + G + +E + L + F+ R
Sbjct: 137 ALNMLSSAVSAGESITHAIAFVGKKLEG---DVGKEFKIMGERLQLGESPDEVFKKSCVR 193
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R L + G + D + L R +E +K A + +++ I+
Sbjct: 194 FPYPAFRFFVITLRANMNRGGQLRDVISRLNRLMFDARAVERKKYALTSEARISAK-IVC 252
Query: 306 FLP 308
P
Sbjct: 253 ATP 255
>gi|15679697|ref|NP_276815.1| hypothetical protein MTH1703 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622834|gb|AAB86175.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
Length = 359
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 4/243 (1%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
L+ D A + + +I + LL
Sbjct: 88 IEADKRLEERGEDSATRASFERASLEELLKEEEKEKLDPKLIMILGGGSGAVLLVVMVLL 147
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ ++ + ++ + ++ + KR S R P AL + ++SG+ +
Sbjct: 148 GFGIEIGLAMMLAVLFMAIII-IFLPNLQRGKRSSEASRELPFALRQMATELKSGLGLHD 206
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
++R VA LSEE T+ E+ + + A NR + D ++ A + ++
Sbjct: 207 SMRSVA---MSGYGALSEEFARTLEEIKYGETTENALIEMSNRIESDGLKRAVYQITRTL 263
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + +L V+ + E M+ + + L + M + L +I +++ A ++
Sbjct: 264 NSGGDLSKTLNVIADDIAYEMRMKLKDYSQKLNSFTMIYMFLAILGPVIFLVMLLAAATV 323
Query: 323 IDT 325
+ +
Sbjct: 324 MGS 326
>gi|260914308|ref|ZP_05920777.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
gi|260631409|gb|EEX49591.1| Flp pilus assembly protein TadB [Pasteurella dagmatis ATCC 43325]
Length = 294
Score = 80.2 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 10/195 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L II ++ +I + + + +++ + ++
Sbjct: 67 LRNIIISFLVFLILFYVNLFYIRLDRWQFILIFLVLFIF------LVWKFGERRNHKMFN 120
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+P+ + +L SG + QAL R +D+ GQ L +E L+ + FE
Sbjct: 121 AMFPEVIQILTAAASSGAGLLQALERCGKDLTGQ---LGDEFKNIHKRLAIGEDPVTVFE 177
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ Y+R + + G I + + L + ME +KKA + +++
Sbjct: 178 DSYSRYPYKEFYFFITIIRTNLSKGGQIREVISRLGRIIADAKKMEQKKKAMTSEARMSA 237
Query: 301 PMIIFFLPVLILVII 315
MI+ P+ +
Sbjct: 238 -MIVASFPIAFFFFM 251
>gi|313835132|gb|EFS72846.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314929110|gb|EFS92941.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970945|gb|EFT15043.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328905820|gb|EGG25596.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 300
Score = 80.2 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 47/305 (15%), Positives = 98/305 (32%), Gaps = 15/305 (4%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ A+ L A V G R+ Q + + R
Sbjct: 6 IVLAAICGALLACAPVFVIFGRRSAPLRLSDALARLSGHGSQDVIVEPAPESGRLERWGT 65
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
++R +V E L G + L+ + V+ + +++ +
Sbjct: 66 KTAIRW--------PQVVSERSRRTLALQG----RTPGDLVAEKAVMALGGMLVPALARV 113
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ VG +++ G+ P I +L + + A +DL+ + +
Sbjct: 114 VAAICGDTLPVTPVGLAVVLAVAGWFIPDTRIRSLSKAVRQDAAEAVLVYVDLVTLARLA 173
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
S +AL A+ L+ + + + + +
Sbjct: 174 NQSAPRALVEAAQI--SDHPVLARIRTTLERSRLEQQSPWAGLDGLSEELGLPELAELVE 231
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L D G S+ +LR V+E R L + +A + LT+ M+I L + +++I
Sbjct: 232 VLRL-DDQGASLAGALRARVNEMRDAHLNREKVEAQTTSESLTIWMVIPVLVLGLVLITP 290
Query: 317 PAILS 321
P ++
Sbjct: 291 PLLIM 295
>gi|322384399|ref|ZP_08058085.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150757|gb|EFX44217.1| hypothetical protein PL1_0931 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 223
Score = 80.2 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/219 (17%), Positives = 84/219 (38%), Gaps = 7/219 (3%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G R + V ++ ++ G I + + V + +
Sbjct: 9 GPRQQAIRTKYYAVEMLSLSFIVLAGFILLGLVSGEG----PVLVIFGLAGAGITPALLF 64
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS-VPLSEEMLL 224
+ ++K++ SI P+ L+ +++ V++G ++ + R +D + PL E++
Sbjct: 65 RTLDQKLKKKKHSILIELPEFLNKIILLVDAGETVQASFIRCIDDRAEKPLSPLQAELIK 124
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSER 283
EL + + R M + T ++ + + G + +LR L + R
Sbjct: 125 CKRELLMNVSLNKSLGELTRRCSMQEISMFTTTVLLNYKRGGHDLTVALRNLSKDLWERR 184
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ KL PM + FL V+++V PA++ +
Sbjct: 185 KAVSRILGEEASSKLVFPMALIFLIVIVIVA-APAMMMM 222
>gi|315650391|ref|ZP_07903462.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315487318|gb|EFU77629.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 269
Score = 80.2 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 82/199 (41%), Gaps = 7/199 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ G L+ Y F V ++ F P + L+ +++ + + +A+ +L
Sbjct: 42 FYAVGILSLISYVFYKSVIIFFVLLPFCFLYPKLKKKELIVEKKRRLLIEFKEAVMILSS 101
Query: 193 CVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +G S++ +++ ++ V + +E + + + AF++ R+ +
Sbjct: 102 LLNAGYSLENSVKEALVELRLLYVKDNLIIKEFEYICQLIYMNISVERAFDDLAYRSHCE 161
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R+ + L + R G + + VS + ++ E + K ++ LP+
Sbjct: 162 DIRSFAKVLRIAKRSGGELESIIAHTVSVIGDKVRIKEEIITMTA-AKRFEQKVMNILPL 220
Query: 310 LILVII---GPAILSIIDT 325
LI++ I P +I+ T
Sbjct: 221 LIVLYIDFSSPGFFNIMYT 239
>gi|317133736|ref|YP_004089647.1| Type II secretion system F domain [Ruminococcus albus 7]
gi|315450198|gb|ADU23761.1| Type II secretion system F domain [Ruminococcus albus 7]
Length = 286
Score = 80.2 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 129/316 (40%), Gaps = 31/316 (9%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
E A+A+ T V++F LI V + + VE + + + + +
Sbjct: 1 MEFAIALFTGVTVFLLILLVATFLSTENVALISKEKLTVEHLCSKI---IKKEPEVLADK 57
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L + K + N L++ ++ + +LG
Sbjct: 58 LGIQTDKYMFN----------------------CNLIGVEPNLDKLIITRILAVTIAVLG 95
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
I+ F + L A +I + F +P+ I++ QK+++ + P LDL
Sbjct: 96 ILIAFLINTPLISLLIG--LATAVITILVFISPTATINDRAQKKKAQFESEIPRFLDLFQ 153
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN-RQVAFENFYNRTQMDC 250
++ + + A++ AE I G LSEE+L + + Q + + + ++D
Sbjct: 154 TAIKINLPVATAIKITAESIDGI---LSEELLRALVVTELGTSNWQDSLYDIAQKYEVDS 210
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ ++ + + G+ I +S+ +S L+ A+++AA + +P+++F + L
Sbjct: 211 FSDFVLDIVTAFQKGSDITESVERQSRSIKSSTLLSAKEQAAKTTSLILIPVVVFKMIPL 270
Query: 311 ILVIIGPAILSIIDTM 326
++++ P I+ I++ M
Sbjct: 271 MIILFLPVIMQILNGM 286
>gi|218708111|ref|YP_002415732.1| putative bacterial type II secretion system protein F [Vibrio
splendidus LGP32]
gi|218321130|emb|CAV17080.1| putative bacterial type II secretion system,protein F, TadB [Vibrio
splendidus LGP32]
Length = 306
Score = 80.2 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 8/196 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + L + L +IF ++ ++ I +++ + L + + +
Sbjct: 65 RWDNLQRQLGKMALGKVVIFSVVALLAIGILNQMSLRLPWFEIL--PLTLIIAWFFGYLH 122
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ +KR + +PDAL++L + +G SI + + V + + G + +E L
Sbjct: 123 LQKREKKR---FEETFPDALNMLASSLSAGESIGRGIGYVGKKLEG---EVGKEFKLMSE 176
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L+ F R L + + G + + + L + R +E
Sbjct: 177 RLNLGEPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVER 236
Query: 288 EKKAASLGPKLTVPMI 303
+K A + +++ ++
Sbjct: 237 KKFALTSEARISAKIV 252
>gi|329935279|ref|ZP_08285245.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329305102|gb|EGG48961.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 315
Score = 80.2 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 4/203 (1%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
++++ L + L + L L L VG + V+++
Sbjct: 73 AVHLRLTTTGLDLTAGEFLTYVTFLVLALWLLAAATLAPFFGPLAALVGLWSAVVFLNWQ 132
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
QKR + PD LL +G+++ AL AE++ P EE+ +L+
Sbjct: 133 RQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELE---APAGEELARVADQLNL 189
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A R + L+ S++ G S+ SLR L + E +
Sbjct: 190 GRTVDDALGELAERLPSRELIVLVTTLVLSNKAGGSVVSSLRNLTQTLEDRKETRREVRT 249
Query: 292 ASLGPKLTVPMI-IFFLPVLILV 313
T + + L L+LV
Sbjct: 250 MLSEVNATAFTVPMLGLGSLVLV 272
>gi|313906429|ref|ZP_07839766.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
gi|313468730|gb|EFR64095.1| Type II secretion system F domain [Eubacterium cellulosolvens 6]
Length = 402
Score = 80.2 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 10/152 (6%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ + + R +P+ + L + +G+S+ QA++R+A + E E+
Sbjct: 258 EKIRAHREELIRRYPEIVSELQLYTAAGLSLRQAMKRIARNEP--------EAERCCYEM 309
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQS-DRYGTSIGDSLRVLVSETRSERLMEAE 288
Q A+ F R R L QS + G + + L R A
Sbjct: 310 ENGVLEQDAYTRFGERCGTAEYRKLALLLAQSQMKGGARLSELLEEEAQGAFENRKRRAR 369
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ +PM + L VLI+V++ PA L
Sbjct: 370 VLGEKAAVRMVLPMGMMLLIVLIIVMV-PAFL 400
>gi|323495641|ref|ZP_08100712.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
gi|323319276|gb|EGA72216.1| flp pilus assembly protein tadb [Vibrio sinaloensis DSM 21326]
Length = 306
Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 80/199 (40%), Gaps = 4/199 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++++L + + + + + +RV ++ + +V +S L Q++Q
Sbjct: 69 VMLQLGKFALLKVFAFLVVVAFVSFYANDTFIRVNSIYALIIGELIGVAVGMSWLEQRQQ 128
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ A+PDAL++L V SG S+ ++ V + + G + EE L +
Sbjct: 129 KEFEMAFPDALNMLASAVSSGESLMHSIMFVGKTLEGS---VGEEFKRMGERLQLGESPD 185
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
F+ NR + L + + G + D + L R +E +K A +
Sbjct: 186 SVFKKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKYALTSEA 245
Query: 297 KLTVPMIIFFLPVLILVII 315
+ + I+ +P L I+
Sbjct: 246 RTSAK-IVAAIPFFFLFIL 263
>gi|240143493|ref|ZP_04742094.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257204527|gb|EEV02812.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|291537188|emb|CBL10300.1| Bacterial type II secretion system protein F domain [Roseburia
intestinalis M50/1]
gi|291540422|emb|CBL13533.1| Bacterial type II secretion system protein F domain [Roseburia
intestinalis XB6B4]
Length = 423
Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 12/182 (6%)
Query: 152 AVILIGYVGFCAPSV---WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ L G + P V +KR++ ++ + D + L++ + +G+++ +A R+
Sbjct: 241 ILFLGGGIVIILPFVEQSRKKEREKKRKALLELQYADMVSNLVLLLGAGMTVSKAWNRLT 300
Query: 209 EDIGGQS-------VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
E+ + + EEM T E+ + A+E F R R L Q+
Sbjct: 301 ENYMNERQKRTICRKEVYEEMQRTSFEIKNGMGEERAYERFGERCGGYRYRKFGNLLAQN 360
Query: 262 DRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
R G+ + L + ER A K G K+ PMI+ L ++L++ PA+
Sbjct: 361 LRKGSRGLTRLLEQEAEDAFEERKSMARKLGEEAGTKMLFPMIL-MLGAVMLILAFPAMR 419
Query: 321 SI 322
S+
Sbjct: 420 SM 421
>gi|260587080|ref|ZP_05852993.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
gi|260542570|gb|EEX23139.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
Length = 248
Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 75/179 (41%), Gaps = 11/179 (6%)
Query: 155 LIGYVGFCAPSVWISNLVQK----RQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + P +I ++ R+ + + DAL+ + + + +G S+D +R +D
Sbjct: 39 AVFFFMLPLPFWYIHQRKKQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKD 98
Query: 211 IGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ ++ E +L + + R++++ + N T LIQ+ + G +
Sbjct: 99 LERLYGEKAEMAREFAYIERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGN 158
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSII 323
+ L +S ++ E A K+ I+ F+P+ I++ + P LS++
Sbjct: 159 MRGILNRCISSIEERIQVKKEIDAVLASRKM-EQKIMSFIPLGIILYMQITSPEFLSVL 216
>gi|253576285|ref|ZP_04853616.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844412|gb|EES72429.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 270
Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 8/203 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + L Y F + +L+ G P W L+++R+ ++ + AL
Sbjct: 39 VICTLVGGAAFVALGYIFFHALPLALLLSLGGLYTPKYWSGYLLRRRRENLSLHFKQALY 98
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +G S++ R +D+ + E+ + A + + + A +F
Sbjct: 99 SLSSSLAAGRSVENGFREAIDDLRLLYPDGDNDVMRELAIICARMDYGQPIEEALLDFSR 158
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R M+ + N R G + + +R + + + E + ++
Sbjct: 159 RAAMEDIDNFADVFTTCKRSGGDLVEVIRRTSNLIGEKLEITQEISVMIAQKRFEAKAML 218
Query: 305 FFLPVLILVII---GPAILSIID 324
PVL L+ + P + +
Sbjct: 219 AA-PVLFLLFMQFTSPDYMRPLH 240
>gi|257064723|ref|YP_003144395.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
20476]
gi|256792376|gb|ACV23046.1| Flp pilus assembly protein TadC [Slackia heliotrinireducens DSM
20476]
Length = 205
Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 88/208 (42%), Gaps = 4/208 (1%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++ ++ + LG +I G+ + F R G +V ++
Sbjct: 1 MMKVWLLAAVASALGCGFIVGWSFIHRKEFLKRRGRGPGAAASDGLFGAVRRKRRQREAS 60
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNR 235
++I+R P+ +D + + +++G+S D A L+ E +R
Sbjct: 61 AAIERHVPEMMDAVALGMKAGLSFDSAFGLYHARFDD---ELARACAQAHTEWESGLVSR 117
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A + R +R + ++ ++G+SI L L +E ++ E+K A +
Sbjct: 118 EQALTDMAERFDSAPLRRFASNVSRNLKFGSSIVRVLGALSAEAQAAYRTRMEEKVAKVP 177
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSII 323
++ +P + LP +++V++GP +L ++
Sbjct: 178 VRMLMPTAMLILPAMLIVVLGPVMLELL 205
>gi|86147188|ref|ZP_01065504.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio sp. MED222]
gi|85835072|gb|EAQ53214.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio sp. MED222]
Length = 306
Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 8/196 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + L + L +IF ++ ++ I +++ + L + + +
Sbjct: 65 RWDNLQRQLGKMALGKVVIFSVVALLAIGILNQMSLRLPWFEIL--PLTLIIAWFFGYLH 122
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ +KR + +PDAL++L + +G SI + + V + + G + +E L
Sbjct: 123 LQKREKKR---FEETFPDALNMLASSLSAGESIGRGIGYVGKKLEG---EVGKEFKLMSE 176
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L+ F R L + + G + + + L + R +E
Sbjct: 177 RLNLGEPIDDVFRKSCRRFPYPSFHFFVITLRANMQRGGQLKEVMSRLNRQMFEARAVER 236
Query: 288 EKKAASLGPKLTVPMI 303
+K A + +++ ++
Sbjct: 237 KKFALTSEARISAKIV 252
>gi|290957845|ref|YP_003489027.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260647371|emb|CBG70476.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 341
Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 3/178 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + L L + G +G A +++++ QKR + PD
Sbjct: 113 AGEFATYVVLAVVALWLIAAATLAPFFGPIAGAIGVWAAAIFLNWQRQKRIEAFINQLPD 172
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LL +G+++ AL AE++ P EE+ +L+ + A R
Sbjct: 173 VARLLANATAAGLALRTALAMAAEELE---APAGEELARVADQLALGRSVDDALGELAER 229
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ S++ G ++ SLR L + E + T +
Sbjct: 230 LPSRELIVLVTTLVLSNKAGGTVVSSLRNLTQTLEDRKETRREVRTMLSEVNATAFTV 287
>gi|331082851|ref|ZP_08331973.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400180|gb|EGG79829.1| hypothetical protein HMPREF0992_00897 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 248
Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 75/179 (41%), Gaps = 11/179 (6%)
Query: 155 LIGYVGFCAPSVWISNLVQK----RQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + P +I ++ R+ + + DAL+ + + + +G S+D +R +D
Sbjct: 39 AVFFFMLPLPFWYIHQRKKQQIRLRKKRLNYQFKDALNAMQVGISAGYSLDNTIREARKD 98
Query: 211 IGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ ++ E +L + + R++++ + N T LIQ+ + G +
Sbjct: 99 LERLYGEKAEMAREFAYIERQLGHSIPLEELLYDLGIRSRVEDILNFTDVLIQAKKMGGN 158
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSII 323
+ L +S ++ E A K+ I+ F+P+ I++ + P LS++
Sbjct: 159 MRGILNRCISSIEERIQVKKEIDAVLASRKM-EQKIMSFIPLGIILYMQITSPEFLSVL 216
>gi|170701755|ref|ZP_02892691.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170133338|gb|EDT01730.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 327
Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 7/178 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
I G W+ + + +R+ I R P LD ++ V G S+ A +
Sbjct: 123 GWLGGIAALVCGAALLVFWLVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAA- 181
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL + L A + N L S RYG
Sbjct: 182 --LQTTEAPLRGCLDHVSRMLRTGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRA 239
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
L + + R E E +A S +L+ ++ LP+ ++ P L +
Sbjct: 240 DIMLDRMSTFMRDLEQAERELEAMSSETRLSA-WVLVMLPIAIGSFVIATNPLYLQSM 296
>gi|123443824|ref|YP_001007795.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090785|emb|CAL13667.1| putative tight adherance operon protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 280
Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 83/205 (40%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ I+ I+ + L + + I++ + F + ++ K+ +P
Sbjct: 56 ILMPIVYSASIYLVNYFLFHFNNVIALLFIMVSVICF-----QLRLSRKRYHRFFKQNFP 110
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++L ++ + SG SI+Q L R ++I S PL E L L+ + + F + Y
Sbjct: 111 ESLLMINMAASSGASINQILERCGQEI---SGPLGIEFNLVCRRLNVGESPESVFYDSYQ 167
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + ++ + + G + + L + E +K + +++V II
Sbjct: 168 RFKYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NII 226
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ I++M H
Sbjct: 227 SIMPIAFSLLLYFLDPITIESMWHH 251
>gi|91772317|ref|YP_565009.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91711332|gb|ABE51259.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 328
Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 95/258 (36%), Gaps = 13/258 (5%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L + + + L I ++ + + ++ + IIF
Sbjct: 13 EIDELDEEQLTTYEKQIILMKLDDIKKNDRLRDFMKDPKGSFSTYPYYAMAFSGPAAIIF 72
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+I G+ +G + V++ F P + + ++ P+ L
Sbjct: 73 MIAGLYLTWGTPGIDN---------VLIFSSWIFILPPALTFYRKARYINKVEEYLPNFL 123
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +G+++ ++ VA+ G+ +++E+ + A LS+ + + ENF R
Sbjct: 124 RDIAEMSRAGLTLPASVETVAK---GEYGEMTKEIRMMDASLSWGISFEDTLENFGKRMN 180
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + Q++R G + L + + +E E++ + + + FF+
Sbjct: 181 THLITRSVALITQANRAGGRVSFVLEAAARDASEIKTLERERRGNMA-VYVVISYMSFFV 239
Query: 308 PVLILVIIGPAILSIIDT 325
+ +++++ + +
Sbjct: 240 FIFVILMLATRFVPTMHM 257
>gi|197117443|ref|YP_002137870.1| Flp pilus assembly protein [Geobacter bemidjiensis Bem]
gi|197086803|gb|ACH38074.1| Flp pilus assembly protein, putative [Geobacter bemidjiensis Bem]
Length = 320
Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/294 (12%), Positives = 82/294 (27%), Gaps = 27/294 (9%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ ++ F + A + + +V R + + S +
Sbjct: 5 IVALIFLAAFGVFLAAFLYLAQRQTSGR---TVLKRRLQTMAGERQGEIPEEFLSVISRE 61
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ L + +L AG + S L+ +
Sbjct: 62 AER------ASELLTRAPQMRTLGKRLEQAGIQLSAS--------------LLLGSTMAA 101
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+L L V + + ++R +PDAL + +
Sbjct: 102 ALGLAILLGLKTQSPLVGFLAAVVVLLVAELMLRVKTERRSIKFTEQFPDALSIAARSLR 161
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G S A++ V +++ PL + A R +R T
Sbjct: 162 AGHSFPTAIQLVGQEVPSPVGPL---FKTAYEQQQLGLRMVDALMRMNERIDSLDLRFFT 218
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ + G ++ + L L R + + + + +L+ ++ LP+
Sbjct: 219 TLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQGRLSG-YVLAALPI 271
>gi|239929199|ref|ZP_04686152.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 314
Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/294 (14%), Positives = 91/294 (30%), Gaps = 34/294 (11%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
+ + +TT +++ + + AVV + +R V + + +
Sbjct: 1 MDLQNLITLTTGIALLTCVLAVVGVHSYATGRAQRQALVDRLTATGQIPIVGRRRHFPTL 60
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
R L+ + +L A G + + L +
Sbjct: 61 DRR----------------LRRTTFGRKLELRLAATGL--DVTPGEFFAAMLAAVAGLWL 102
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G L + G +G A +++ QKR P+ +
Sbjct: 103 VG-------------QATLAPFFGPIAGLLGIWAALQFLNWQRQKRIEKFINQLPELARI 149
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L ++G+++ A+ AE++ P EE+ +L+ + A +R
Sbjct: 150 LANATQAGLALRTAIGMAAEELE---APAGEELSKVANQLAVGASMDDALGELADRLPSR 206
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ S+R G + +LR L + E + +T +
Sbjct: 207 ELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVSMTSYAV 260
>gi|167836685|ref|ZP_02463568.1| pilus assembly protein, putative [Burkholderia thailandensis
MSMB43]
Length = 328
Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 97/293 (33%), Gaps = 15/293 (5%)
Query: 22 VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
V+ S A+V+ L + +L + R ++ + ++ S S L R + +
Sbjct: 6 VAAASAFLAIVVGGLIAAQL------FNLVRHRPARRILQRVKAASGSEPLPRRPVDADK 59
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ D + L + + L + + ++ + +
Sbjct: 60 RHQLFSGEQGYGGDNAFLTWLSQ---HLQRVRAVSGPGGLRLIAVATLVSLALSIVATSV 116
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
P LRV I + A + + R +PDA+DL++ V +GI +
Sbjct: 117 AGLPAWLRVLIDIGVPLATARAVYRMLIVRFRLR---FLAVFPDAIDLMVRAVRAGIPVV 173
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ P+ L + + E R Q+ L+
Sbjct: 174 HAIVTAG---VESQEPVRSTFHTIGDGLRVGADLKEVLEQACERLQIADFSFFAVCLMLQ 230
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G S+ ++L L R+ R + + KA + K++ +I ++ +
Sbjct: 231 RETGGSLTETLENLSGIIRARRDVRLKTKALTAEGKISAKIIAAVPFAIMGFL 283
>gi|260778158|ref|ZP_05887051.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606171|gb|EEX32456.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 301
Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 4/178 (2%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ ++ +K+ L L+ V +G+
Sbjct: 84 GTIFWLQALAWYWQTAVVLVCFGVLFCALFVVRRKKQIEEFDTNIVQVLGLVSRAVSAGL 143
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ QA+ +VA Q+ L E L L+ + + + R R + AL
Sbjct: 144 SVPQAIEQVAN---SQTGLLGREFALITDNLALGISLRQTLDEACTRLPYRTFRYFSVAL 200
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
I + G + + L L R M + K+ + P++T + LP++++ ++
Sbjct: 201 ILNQSNGGQLREILHNLSRTMHDNRAMLKKVKSMTAEPRMTAK-FLSLLPLILVAVVA 257
>gi|284031223|ref|YP_003381154.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283810516|gb|ADB32355.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 306
Score = 79.1 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 43/314 (13%), Positives = 94/314 (29%), Gaps = 10/314 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ A + + ++ ++ + + T+
Sbjct: 1 MTWAFVSGGLVGLGVFLLIRMFVKPAPNVLSTIARIDAGRTGYTSAATASAAGEKVLGGV 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI-LGI 132
R ++L ++ + L +L ++ + LI + +
Sbjct: 61 DRARETLGRRLEAEANARGWAFGRLRRDLA----VMNQPFATMLATKVFFALGALIFIPL 116
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L P + F P + + ++R+ + LDL+ +
Sbjct: 117 VLYGASVIGLPAPGATPAVVTLAAMAFAFFLPDLALRQEAEERRRDFRHVVGSFLDLVAM 176
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G + +AL A IG L A L A + ++ +R
Sbjct: 177 NLAGGRGLPEAL-MTASTIGDHWAMARIRQALANARL-IGITPWDAMARLGDDLGVEELR 234
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA-ASLGPKLTVPMIIFFLPVLI 311
+ AL + G I SL + R + L + E KA L +++ +
Sbjct: 235 DLASALALAGDEGAKIRASLLARAASLRRKELADVEGKAGERSQSMLVAQLVMCA--AFM 292
Query: 312 LVIIGPAILSIIDT 325
L + PA +I+ +
Sbjct: 293 LFLGYPAGAAILGS 306
>gi|229825135|ref|ZP_04451204.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
49176]
gi|229790507|gb|EEP26621.1| hypothetical protein GCWU000182_00486 [Abiotrophia defectiva ATCC
49176]
Length = 404
Score = 79.1 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
G +L+ F + + ++ R+ +K + + + +I + +G+S+ A+ + E
Sbjct: 234 GFTLLLIICLFVSFNENNKKKIKDREEELKNGYTEFVGRFVILLGAGLSV-SAIWKKLEA 292
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG-TSIG 269
+ LSEE+ LT+ E + + A+ENF R + QS + G +
Sbjct: 293 GFASNKSLSEEIRLTLWETANGKTEREAYENFGKRIGGTQYAKFVSVINQSLKLGSGQLL 352
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L ER A+ KL +PM++ + +++L+I+ PA++++
Sbjct: 353 ARLEAESEAAMFERRNRAKVMGEVADTKLLLPMMLQLV-LIMLIIMVPALMAV 404
>gi|310830508|ref|YP_003965609.1| hypothetical protein PPSC2_p0148 [Paenibacillus polymyxa SC2]
gi|309249975|gb|ADO59541.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 292
Score = 79.1 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/292 (12%), Positives = 105/292 (35%), Gaps = 22/292 (7%)
Query: 24 IFSLIYAVVIPSLGSG--ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLR 81
+F+ I+ V++ + M++ +V R+ L++ ++D+ S L +K +
Sbjct: 4 VFAGIFLVLLFFFAKNILMMIFSMENYSVHRKRLKQLDFKRKKEDADVSELIDTVTKPVI 63
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
V + + I ++L+ A + ++ + L++ ++ ++ ++ +
Sbjct: 64 RHV--FSHFKPKRLDQIESQLKMAKWDKHFTAIQYRALSLLLKVVGIVCFLVLV------ 115
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + ++ V N R++ + +PD + + + + +
Sbjct: 116 -----KASLAIALIWAIVLIFGMDFLFMNSTNNRKAKLIADFPDFIRITEGYLTANVPFA 170
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+A+ + +G + P+ + ++ + A + M +R + +
Sbjct: 171 KAVSECVKYVGDEWKPILQRFVVDCEL----KSLNEALDGLKRDVDMFEIREFVALVKLT 226
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAAS---LGPKLTVPMIIFFLPVL 310
G D + R ++ K +G L P+++ L V
Sbjct: 227 LEQGGDAKDGFTAQADKIRELQMDMIAIKIGKRQTMGIILQGPLLLCNLMVF 278
>gi|329928965|ref|ZP_08282775.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
gi|328937217|gb|EGG33644.1| type II secretion system protein F domain protein [Paenibacillus
sp. HGF5]
Length = 285
Score = 79.1 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 4/172 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+I + Y F + +L G G P +W ++++R+ ++ + AL
Sbjct: 55 ACVILGGLLFCFIGYLFYHNLILSLLPGAGGLMIPKLWRQFMLERRRKTLNLHFKQALYS 114
Query: 190 LLICVESGISIDQALRRVAEDI----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S++ R +D+ G S L E+ + ++ L + + A ++F R
Sbjct: 115 LSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKVIVSRLEYGEPIEAALQDFARR 174
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
M+ + N R G + + +R S + ++ E +
Sbjct: 175 AGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLDIQQEIAVMIAQKR 226
>gi|29829794|ref|NP_824428.1| hypothetical protein SAV_3252 [Streptomyces avermitilis MA-4680]
gi|29606903|dbj|BAC70963.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 313
Score = 79.1 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 3/178 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L L + VG +V+++ QKR + PD
Sbjct: 85 AGEFTTYVAAVVVALWLIAATTLAPFFGPIAALVGIWGAAVFLNWQRQKRIEAFIGQLPD 144
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LL +G+++ AL AE++ P EE+ +L+ + A + R
Sbjct: 145 VARLLANATAAGLALRTALAMAAEELE---APAGEELARVADQLTLGRSVDDALDELAER 201
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ +++ G S+ SLR L + E + T +
Sbjct: 202 LPSRELIVLVTTLVLANKAGGSVVSSLRNLTQTLEDRKETRREVRTMLSEVNATAFTV 259
>gi|307353960|ref|YP_003895011.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157193|gb|ADN36573.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 336
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 83/211 (39%), Gaps = 4/211 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+L+V + ++F + G I + + + + +I + P ++
Sbjct: 53 PENILIVSAPIALLFFVFGFISVISNYGIYSLLNSTLIDDIFVITILIMLIPLAFLDTKE 112
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
R +I+ A P+ + ESG+++ A+ V+ G L+ + E+S+
Sbjct: 113 SMRTRNIEVALPNFFRDVAGMNESGMTLPNAIHTVS---DGDYGTLTPYIKKLDNEVSWN 169
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A F R + + + ++ + G + + LR +++ + E++
Sbjct: 170 IPFINAIHRFGERLGTPLAKRSVDLIAKASQAGGDVSEVLRAAANDSYEFVSLATERRNN 229
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + + ++ F + +L++ I+ L +
Sbjct: 230 ML-IYIVIVLVSFLVFLLVIAIMTSTFLDTM 259
>gi|294146460|ref|YP_003559126.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
gi|292676877|dbj|BAI98394.1| Flp pilus assembly protein TadC [Sphingobium japonicum UT26S]
Length = 287
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/263 (20%), Positives = 109/263 (41%), Gaps = 4/263 (1%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
D + I +KL AGF+ + + + R+
Sbjct: 25 ADRRLEARLGMAGDRPGFRLPAAFGARGRDRSEIADKLMLAGFQDARAADRFVWARMAAT 84
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + ++ ++ F + V+++ + + I L +R +I +P
Sbjct: 85 VGAGLAAMLV----SRIGWGGFLAQPLLVVIVTGLTYVGAKQAIHLLAARRARAIMAEFP 140
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDL+L+ +ESGIS+DQ R +A D + + + +A+L + A + +
Sbjct: 141 FLLDLMLMMLESGISLDQCFRSIARDEAIAVPHHARLIAMLVADLDRGMRYEQALDRWAA 200
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ + Q+ G + +LR V E R+ A + + ++ V MI+
Sbjct: 201 RVAVNGAKELAALFRQALFQGVELAPALREFVREFTQRRVANAREAMGGITVRMVVLMIL 260
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
FF+P L +V+ GP +++I DT++
Sbjct: 261 FFMPALFVVLGGPPVVAIFDTLR 283
>gi|115351459|ref|YP_773298.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115281447|gb|ABI86964.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 322
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 57/178 (32%), Gaps = 7/178 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
I G W+ + + +R+ I R P LD ++ V G S+ A +
Sbjct: 118 GWLGGIAALVCGAALLVFWLVSRIHRRRQMIVRQLPSFLDGIVRLVTLGNSVPAAFQAA- 176
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL + L A + N L S RYG
Sbjct: 177 --LQTTEAPLRGCLDHVSRMLRTGVEIDRAMMHIANVYHTKEFELVGSVLRLSVRYGGRA 234
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
L + + R E E +A S +L+ ++ LP+ ++ P L +
Sbjct: 235 DIMLDRMSTFMRDLEQAERELEAMSSETRLSA-WVLVMLPIAIGSFVIATNPLYLQSM 291
>gi|228982434|ref|ZP_04142693.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
gi|228776617|gb|EEM24925.1| hypothetical protein bthur0002_55670 [Bacillus thuringiensis Bt407]
Length = 314
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/293 (14%), Positives = 104/293 (35%), Gaps = 31/293 (10%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
A+ +F++ +I ++++ + + + + + K + T+ S
Sbjct: 4 AIVVFTVFMLAIIFISTKEKMKEDKSVLTMRKSQASSKLRENALKLKLERMVETKAKVST 63
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+N V+ + L AG+ + + ++ I+ IL ++
Sbjct: 64 KNTVETMCL--------------QAGY--KLTYGEFKLMSFTSAIVLPILVLVMTSN--- 104
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L VG+ P I+ + +R + I+ ++L++ ++
Sbjct: 105 ---------PILACLFIMVGYMIPGQIIAFIKNRRLNMIEEQVGSFMNLVVERYKAQNDF 155
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
++++ D GQ P+ E+ T+ ++ A +N RT + +
Sbjct: 156 PKSIKESLYDFKGQ-EPMYSEIRQTVLDIELGIPTTDAMDNLARRTGNKYLERLSNYYQI 214
Query: 261 SDRYGTSIG--DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ GT + L + R M++ + GP +++ +P+LI
Sbjct: 215 AMTLGTEDARENLLGEAFQQFEENRKMKSTLRKEIAGPVREAYIMVAAIPLLI 267
>gi|197337544|ref|YP_002157816.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
gi|197314796|gb|ACH64245.1| Flp pilus assembly protein TadB [Vibrio fischeri MJ11]
Length = 307
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 12/223 (5%)
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
L DE + L + ++ L +++ V FLI+ I+I L P +
Sbjct: 53 LSDETLKQALLRFFNNTYQQIDSLANIKIPVYCAFLIVLGIYI-NKSFLQANPIIIVTIT 111
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
I+ G L ++ ++ + ++PDAL+++ V +G I QA+ V +
Sbjct: 112 EIIGLIFGVV-------WLRKREKNRFEESFPDALNMMSSAVSAGEGIMQAVVFVGRSLD 164
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G+ + +E +L + F R + L S + G + + +
Sbjct: 165 GK---VGKEFKRMGEQLQLGESPDTVFRKSCERFPYPSFQFFIITLRTSMQRGGQLKEVM 221
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L R +E +K A + + + I+ +P + L ++
Sbjct: 222 KRLNRLMFGARAIEKKKLALTSEARASAK-IVAAIPFIFLFML 263
>gi|55377349|ref|YP_135199.1| hypothetical protein rrnAC0464 [Haloarcula marismortui ATCC 43049]
gi|55230074|gb|AAV45493.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 815
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/300 (11%), Positives = 88/300 (29%), Gaps = 2/300 (0%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+++ I ++ S + ++ + ++ Q ++ ++ +
Sbjct: 6 LGLAPLAVVVGILGLIGYSTVNERFDRNVTRLSRRLFGRYVGQSPKRERQLEAAYIDETY 65
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ + A+ + +N+ + + F + +
Sbjct: 66 RGYAARTLVYACVGAVAGAITGAYAIGGFLLVLPALVNLAQGLPSTMVTAFGLRTFELVL 125
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ L V + + + + N R +I + +
Sbjct: 126 TPTQTLYILIGGGVLSGAATAGLTYLYRWERLKNQADVRSRNIDEGMARTIAFMYALSRG 185
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNAT 255
G+S +R +A + + E+ + + E+ + A E+ RT + +
Sbjct: 186 GMSFSDVMRVLARN-QEIYGDTAREVGVAVREMDLFGRDMITALEHVSRRTPSEQFKTFI 244
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ L + G S+ LR + E E L + +F VL L+ I
Sbjct: 245 ENLSSVLQSGQSLAPFLREQYERHQEEAAERQEDLLERLATVAEAYVTVFVAAVLFLMTI 304
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 4/163 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++ + P + + +R S I+ A PD L+ L E+G+++ ++LRRV G
Sbjct: 452 LVIQSVLLILGPFALVRFIYTQRLSRIEDATPDLLERLASLNEAGMTVVESLRRVR---G 508
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+EEM A++ N A F R Q V L + +G
Sbjct: 509 SDIGVLTEEMHRIWADIRMGANVDDALVRFGRRVQTTAVTRIVTLLTHAMHASGQLGPVF 568
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R + + L ++ + L V + F + ++I+V +
Sbjct: 569 R-IAATQSRADLRLKRRRRQQMLTYLVVIYVAFLVFLVIIVAV 610
>gi|239943898|ref|ZP_04695835.1| putative integral membrane protein [Streptomyces roseosporus NRRL
15998]
gi|239990352|ref|ZP_04711016.1| putative integral membrane protein [Streptomyces roseosporus NRRL
11379]
gi|291447361|ref|ZP_06586751.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291350308|gb|EFE77212.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 314
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 6/254 (2%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + L + + I + + +LR G L + L + L
Sbjct: 35 RDALVERLSHVGQIPETGRIRRFKGLDRRLR--GTALGRKLELKLAATGLDITPGEFLVY 92
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L + +G + +++ KR P+ +L
Sbjct: 93 AVVAMAGLWMIASSMLAAFFGPVAALIGLWGTNAFLNWQRIKRTERFINQLPELSRILAN 152
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++G+++ +L AE++ P EE+ L+ + A +R +
Sbjct: 153 ATQAGLALRTSLSMAAEELEN---PAGEELARVARRLAVGEPLEDALSELTDRLPSRELV 209
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L+ S+R G ++ SLR L + E K +T + V +
Sbjct: 210 VLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQVTVTA-YAVPIFGVGAM 268
Query: 313 VIIGPAILSIIDTM 326
+++ + +D M
Sbjct: 269 LLMNAVMPGALDRM 282
>gi|238796993|ref|ZP_04640497.1| Type II secretion system protein F domain protein [Yersinia
mollaretii ATCC 43969]
gi|238719253|gb|EEQ11065.1| Type II secretion system protein F domain protein [Yersinia
mollaretii ATCC 43969]
Length = 279
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 83/205 (40%), Gaps = 9/205 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++ +L I + + + + + IL + F + + + KR P
Sbjct: 55 MVIPVLYSIGAYSANIYWLHFNSIIILIFILTSIIFF-----QLKISRKTHHTLFKRDLP 109
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ + SG SI+Q L R +I S PL +E+ L L+ + + F + Y
Sbjct: 110 EVILMINMAASSGASINQVLERCGNEI---SGPLGDELDLICRRLNLGESPEAVFNDAYQ 166
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ + + G + + + L + E +K + +++V II
Sbjct: 167 RFLYPEFYFLITIILLNLQQGGQLRELISRLSQVINKNKTSEQKKAVMTAQTRMSV-NII 225
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P++ ++ + +++M +H
Sbjct: 226 SLMPLVFSTLLYFLDPATMESMWNH 250
>gi|225376647|ref|ZP_03753868.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
16841]
gi|225211530|gb|EEG93884.1| hypothetical protein ROSEINA2194_02289 [Roseburia inulinivorans DSM
16841]
Length = 344
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/209 (20%), Positives = 83/209 (39%), Gaps = 7/209 (3%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF--CAPSVWISNL 171
L+ L+ II + G+ + + + +++ G P ++ +
Sbjct: 135 TYYLLATLIGNIILGMAGLFAGIAIGLAMNMGMRSFLIGIVIFVIFGLLGYIPYDSVNAV 194
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
V KRQ I+R +P + + + +G+ + QA R + G L +EM + +
Sbjct: 195 VSKRQEDIEREFPQVISKMTLLTVAGMEVSQAWRLASASGEGT---LYKEMKRVLVDFDN 251
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKK 290
+ A+ F +R A+IQ+ G S I R L E+ E A +
Sbjct: 252 NVSPVEAYSKFISRCSNTYTTKLATAIIQNISKGNSEIVTLFRQLNDESWLEHKHNARRM 311
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ KL +P ++ +I++II P +
Sbjct: 312 GEKIQSKLLLPTML-MFGGIIILIIVPVM 339
>gi|154151443|ref|YP_001405061.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|153999995|gb|ABS56418.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 349
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/270 (15%), Positives = 98/270 (36%), Gaps = 5/270 (1%)
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI 115
+++ S S K L + +L+ + E I L+
Sbjct: 13 KEKDPLSQAPPPLSKSEMDSVEKELSDISGRLDTERKSR-EGIGRFLKHPLKVLVEKPEN 71
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+L+V + + +I + G I + + + + + P + Q R
Sbjct: 72 ILIVCVPLSLIVFVGGFISMVKMYGISVLFNSTVIDDFAVAAVLISIIPVAVLDFREQSR 131
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+++ A P+ L +SG+++ A+ VA G + LS + E+S+
Sbjct: 132 MRNLETALPNFFRDLAGMNDSGMTLPNAVHLVA---GAEYGTLSPHIRKLDNEMSWGVGF 188
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A F + + ++ + G I + LR ++T + E++ L
Sbjct: 189 VEALYRFGKSLGTPLADRSVDLIAKASKAGGDISEVLRAAANDTFEVVNLAQERRNNML- 247
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + ++ F + + ++ ++ + LS + T
Sbjct: 248 IYVIIVIVSFTVFLFVIAVLVSSFLSTMAT 277
>gi|153811267|ref|ZP_01963935.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
gi|149832765|gb|EDM87849.1| hypothetical protein RUMOBE_01659 [Ruminococcus obeum ATCC 29174]
Length = 342
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 6/155 (3%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE----MLLTIA 227
+ KR + +P + + +++G+++ +A ++++ D + T
Sbjct: 186 MAKRAEQLLMDYPSLIMKFTLLIQAGMTVRRAFQKISSDYLRNCPKEGRYAYEAVTTTCH 245
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLME 286
E+ A+ F R + + LIQ+ + G + D L E ER +
Sbjct: 246 EMDSGVAELEAYRRFGERCGQMKYKTFSTILIQNLQKGGHRMADLLEKEALEAWDERKRK 305
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
A + KL VPMI+ L V++ +I+ PA LS
Sbjct: 306 ARVMGETAATKLLVPMIM-MLAVVMAIIMIPAFLS 339
>gi|149188842|ref|ZP_01867132.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
gi|148837262|gb|EDL54209.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
Length = 301
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/195 (17%), Positives = 75/195 (38%), Gaps = 7/195 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ L + + + E ++ ++ V + W+S +R+ ++
Sbjct: 71 ANIMVGLFVVASVVAAWYIAFEVLSANQIVVFVVALLVFWFLGYQWLS---NRRRVQFQQ 127
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDAL++L+ V +G S+ QA+ V +++ + E L + +
Sbjct: 128 TFPDALNVLMSAVTAGESLMQAVSFVGQNLDN---EVGREFKNMGDRLKLGESPDQVLQR 184
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R T A+ + G + L L+ R ME +K A + +++
Sbjct: 185 AAKRFPYPEFIFFTIAIRANMSRGGQLRGVLARLIRVLVDARTMETKKMAMTSEARISAK 244
Query: 302 MIIFFLPVLILVIIG 316
++ PV+ VI+
Sbjct: 245 VVAAI-PVIFAVILY 258
>gi|331092046|ref|ZP_08340877.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402247|gb|EGG81818.1| hypothetical protein HMPREF9477_01520 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 251
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/201 (18%), Positives = 82/201 (40%), Gaps = 7/201 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L I+ G +L Y F + + F W ++R+ ++ + +AL
Sbjct: 20 LLVIVKGLGGVGILAYLFYHSWIGYAALLPLLFLYYRTWKKEYAKRRKEKFQKQFKEALQ 79
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + G SI+ A+R V +++ +++E + +L + A++ F +R
Sbjct: 80 SLRTVLNVGYSIENAIREVKKEMTTLYGEDALITKEFSYLVRQLEMNIPVEQAWKTFADR 139
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+M V + L R G + LR + + ++ E + ++ I+
Sbjct: 140 VEMSEVTHFVTILSTIKRSGGDMIAVLRQTIETICMKLEVQQEIYTIIVAKQMEFR-IMS 198
Query: 306 FLPVLILVII---GPAILSII 323
+P+ I+V + P LS++
Sbjct: 199 AIPMGIIVYLKMSFPEFLSVL 219
>gi|262275465|ref|ZP_06053275.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
gi|262220710|gb|EEY72025.1| flp pilus assembly protein TadB [Grimontia hollisae CIP 101886]
Length = 308
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/199 (15%), Positives = 74/199 (37%), Gaps = 11/199 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
V ++ + L ++ P V A+ + ++G + + Q
Sbjct: 77 FAVLKIIAFLGLACSVMAYMLISLFKFGPIISVVIALPSVTFLGIRYMDI-------RTQ 129
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++ +R +PDAL+++ V +G S+ A++ V + + E L+ +
Sbjct: 130 NAFERNFPDALNMVASSVTAGESLLHAIQYVGSHLDNI---VGREFKRMGERLNIGESTD 186
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
F R + A+ + G + + L + R +E +K+A +
Sbjct: 187 AVFRKACQRFPTPAFQFFVIAMRVNVNRGGQLRHVIGRLNRVLFNARSIEMKKRAMTAEA 246
Query: 297 KLTVPMIIFFLPVLILVII 315
+++ I+ +P + L +
Sbjct: 247 RMSS-YIVCAIPFIFLFGV 264
>gi|160893700|ref|ZP_02074484.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
gi|156864685|gb|EDO58116.1| hypothetical protein CLOL250_01254 [Clostridium sp. L2-50]
Length = 301
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 73/190 (38%), Gaps = 4/190 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +I G ++ + + +++ G A V+ S ++KRQ + + D +
Sbjct: 70 AVCLILYLGLVGIISFLYYNSPLPILIAAPGGVAALRVFRSRCIEKRQRQLYVEFKDMVQ 129
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G + + A E++ + +E+ I L + + ++ R
Sbjct: 130 SLAASMGAGYAFENAFTAAYEEMRKLYGDSGLIVKELKWVIRGLRMHEDIEYLLQDMGER 189
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + Q + + R G ++ ++ ++ + +E E + K I+
Sbjct: 190 SGVREISEFAQVVGVAKRTGGNMVHIMKATAADISRKMEVELEIQTMIA-AKKYEQKIML 248
Query: 306 FLPVLILVII 315
+P IL +
Sbjct: 249 IVPFFILAYL 258
>gi|20092770|ref|NP_618845.1| hypothetical protein MA3976 [Methanosarcina acetivorans C2A]
gi|19918065|gb|AAM07325.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 667
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 105/320 (32%), Gaps = 19/320 (5%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
D AT L + + A+ + I+ V + L + E + R + +
Sbjct: 301 MIDNGGATNLYILVYGAIPFGTAIFLVFLDMLTGDAEK------MPEEKTSRIKSDSFSD 354
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
R + F +K+N ++ I L + V V
Sbjct: 355 VRVKPWTERDEELLQKMAFYEKVNRVKNVILHPIKTMLDR---------PVYAFVISVPI 405
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + I + + P + L ++ I+ P
Sbjct: 406 ALGYFASAFLKQMPYEGGFIETASTLDDYIFVTLLVLFIPYIIFHELEVRKIRQIEDQVP 465
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L L +GI + A+ A+ L E+ T+A++ + N + A + F
Sbjct: 466 EFLKRLASINGTGILLADAIAITAQ---SNMGKLRSEIKCTVADIRWNSNLEEALKRFEA 522
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + R + + ++ I + + + ++++A + + + +
Sbjct: 523 RIRTNMTRRSLTLIAKASESTGDIHKVISTVADDA-DIEKNLKKERSAEMFIYVFIIFVT 581
Query: 305 FFLPVLILVIIGPAILSIID 324
F + ++I+ ++ L +D
Sbjct: 582 FCVFLVIVYVLAAFFLPALD 601
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 2/193 (1%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + +I + + R+ +I P A L +
Sbjct: 113 VLIEAHFPFILTIVGGLIFFSMIAAFTYGLIMAYPPMKADSRKRAINATMPHATAFLYVL 172
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVR 252
G + + S E I ++ + + Q A N +RT + +
Sbjct: 173 QRGGGMTIFDIMKSLSKHSHLYGTASHEFGNIIRDVEYFGKDLQDALWNAADRTPSEQFK 232
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ LI G I L+ +S E ++ +LG V + +F + L L
Sbjct: 233 DLVDGLISIVSGGGDITLYLKNKTDLYKSNANKEHKRFLDTLGLLAEVYITVFVVGPLFL 292
Query: 313 VIIGPAILSIIDT 325
++I ++++ID
Sbjct: 293 MVIL-VVMNMIDN 304
>gi|308068033|ref|YP_003869638.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
gi|305857312|gb|ADM69100.1| Flp pilus assembly protein TadB [Paenibacillus polymyxa E681]
Length = 291
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 5/191 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L I++ ++ Y F + +L P + L+Q+R+S++ + AL
Sbjct: 61 LCILFSGVLFAMIGYLFYHQWILSLLCAAGAVVTPRYFRKFLLQRRRSALSIQFKQALYS 120
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S++ R ED+ S L E + A L + A + R
Sbjct: 121 LSSSLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNIITACLEIGQPVEAALQELARR 180
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
QM+ + N R G + + +R S + ++ E K ++F
Sbjct: 181 AQMEDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLEIQQEIGVMIAQ-KRFESRVMF 239
Query: 306 FLPVLILVIIG 316
P L ++ +
Sbjct: 240 AAPFLFVLFMT 250
>gi|239629080|ref|ZP_04672111.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519226|gb|EEQ59092.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 418
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 9/183 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F G + + + KR+ + + + L L+I + +G+SI A
Sbjct: 234 FLPLAGLGAVFAVLLTLKDQSDVKKDENKRKHQLLLDYSEVLSRLIIFLGAGMSIRTAWD 293
Query: 206 RVA-------EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+VA +D + +EM T ++ AF +F R + + L
Sbjct: 294 KVAFDYQKLVDDGKQKPRYAYQEMYETSCQMRGGVPEGRAFMDFGRRCGLQQYMKLSSLL 353
Query: 259 IQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
Q+ + G+ ++ D+L+V ++E +R +A + G KL +P+ + L V+++VI P
Sbjct: 354 EQNRKNGSKNLRDTLKVEMAEAFEQRKHQARRLGEEAGTKLLLPLFM-MLSVVMVVIAVP 412
Query: 318 AIL 320
A++
Sbjct: 413 ALM 415
>gi|160893699|ref|ZP_02074483.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
gi|156864684|gb|EDO58115.1| hypothetical protein CLOL250_01253 [Clostridium sp. L2-50]
Length = 434
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + IG + C + QKR + +A+P +DLL + + +G+++ AL
Sbjct: 260 PFIVFLLCVSIGVLLVCKGYSDLHKAGQKRNQELMQAYPSFVDLLSLYMGAGLTVKGALL 319
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
++ S LSEE+ T+ E+ + NR ++ L Q+ R G
Sbjct: 320 KIVTM--TDSRILSEEINYTLNEIRSGIPETEGYYRLGNRLELPVYLKMMTLLSQNIRKG 377
Query: 266 TSIGDSLRVLVSE---TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
T D L +L E + A+KK G +L PMI+ L V+++++I PA++
Sbjct: 378 T--RDILNMLAEEELSALQLKRELAKKKGEEAGTRLLFPMILQ-LGVVMIIVIAPALMG 433
>gi|197106462|ref|YP_002131839.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
gi|196479882|gb|ACG79410.1| Flp pilus assembly protein TadB [Phenylobacterium zucineum HLK1]
Length = 305
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/268 (16%), Positives = 90/268 (33%), Gaps = 20/268 (7%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
T + A R + + + L + + + +L A G + V
Sbjct: 25 TEARSAPAVQAARLSLRRPGASRLDALAQRILPRPAVLRARLAATGLPITLGHYAVASVA 84
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ V L L L L + + + +G +R+
Sbjct: 85 VGVVFGALALAAGAPPILALLAAAADGLLLPHLGVGILMG-------------RRRGRFL 131
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + +A+ L++ + +G+ + + + V +I G P+ EE E+ + A
Sbjct: 132 KTFAEAIALIVRGLRAGLPVTETVGVVGREIEG---PVGEEFRRVADEVRLGAPIEGAMG 188
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + L G ++ +SL L R + M + KA S +
Sbjct: 189 EAARRIGLPEFDFLAICLAVQRETGGNLAESLENLEHILRRRQQMRLKIKAMSSEATASA 248
Query: 301 PMIIFFLPVLILVII---GPAILSIIDT 325
+II LP + V++ P + ++ T
Sbjct: 249 -LIIGVLPFAMAVLMSIASPDYMRVLFT 275
>gi|84489944|ref|YP_448176.1| hypothetical protein Msp_1152 [Methanosphaera stadtmanae DSM 3091]
gi|84373263|gb|ABC57533.1| conserved hypothetical membrane-spanning protein [Methanosphaera
stadtmanae DSM 3091]
Length = 307
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ +L ++ ++IS + R+ +I+ PD L+ + + G+ + AL ++
Sbjct: 66 PIIISVLFLFLPSVIMIIYISYNREHRKENIEEQLPDYLNQIASLLNVGLGFESALEELS 125
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL+ E+ + E F + + NR +D +R Q +I + G ++
Sbjct: 126 K---TSKGPLNNEIKQLLIETQFKKPFNESLMDIANRNDLDNLRYIFQIIIHTRESGGNL 182
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ L + + + L++ +++A+ + + + + L +IG
Sbjct: 183 AEVLEDISHDLKEIILLKKQRRASVMMSVMLIIISSTIATPFALGMIG 230
>gi|228989138|ref|ZP_04149156.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228770565|gb|EEM19112.1| hypothetical protein bthur0001_57510 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 324
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/314 (11%), Positives = 88/314 (28%), Gaps = 27/314 (8%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V IF L+ + +KR K A + Q ++K S +
Sbjct: 4 IILALIGVCIFILLATFFVK-------DKRKKYTAESILKDLENQKALMEKRSKEEQDID 56
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
L +F + L N+ + + I I
Sbjct: 57 IPYTFLDSFFNNFSFTEKLAPSNV--------IAEARRYEWFIGAKEYWTI------YIV 102
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ ++ +GF + +K + + + +
Sbjct: 103 GSTLLTGSIFLMLNGHIGCVIGYVLGFYIHRFMLHVHRRKYKFVENDRISIYMKTMTNSL 162
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++ A+ V + + EE+ +L + A + + +
Sbjct: 163 HILGTVIDAIEEVKPLVHSS---IREELDKATFKLKQGKSVAEALSSLDKKYPYKELIFY 219
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV---PMIIFFLPVLI 311
+ L +D+ G ++L + + ++ + + A + + I+ LP +
Sbjct: 220 HEMLDVADKNGGRNTEALESIALDFEDRKVKQMQLYAETTQGVKSFRNTASIVIALPFIF 279
Query: 312 LVIIGPAILSIIDT 325
+ A ++ T
Sbjct: 280 KFFMPQAYSILMRT 293
>gi|182436319|ref|YP_001824038.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776949|ref|ZP_08236214.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|178464835|dbj|BAG19355.1| putative integral membrane protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657282|gb|EGE42128.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 314
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 81/242 (33%), Gaps = 5/242 (2%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R L + + + +LRA + + + V P F + +
Sbjct: 35 RDALVDRLSHVGQIPETGRRRRFKGFDRRLRATALGRKLEMKLAATGMDVTPGEFFVYAL 94
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + G + L + +G + +++ KR P+ +L
Sbjct: 95 VAMAGLWMVA--SSLLAAFFGPVAALIGLWGTNAFLNWQRIKRTERFINQLPELSRILAN 152
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++G+++ +L AE++ P EE+ L+ + A +R +
Sbjct: 153 ATQAGLALRTSLSMAAEELED---PAGEELARVARRLAVGEPLEDALSELTDRLPSRELV 209
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L+ S+R G ++ SLR L + E K +T + F +L
Sbjct: 210 VLVTTLVLSNRAGGTVVSSLRNLTETLEERKETRREVKTQLSQVTVTAYAVPLFGIGAML 269
Query: 313 VI 314
++
Sbjct: 270 LM 271
>gi|323493930|ref|ZP_08099047.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
20546]
gi|323311871|gb|EGA65018.1| putative Flp pilus assembly protein TadB [Vibrio brasiliensis LMG
20546]
Length = 304
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 91/254 (35%), Gaps = 12/254 (4%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
++++ ++L +++ + + A +++ +LR + + + +
Sbjct: 20 RTRQNNQLNKLIEMEAEFEGVKGVRSVIDAQQFEKDFKARLRQ---QYKAIVKVFQPHMP 76
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ ++F + I I+ ++ + + ++ L Q+++ K
Sbjct: 77 LKLLVFFSVSSIAIYTINEFFFRQDFVTCLV-----ILEPILFVMFFIKLKQRQEEKFKN 131
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDAL++L + SG SI A V + + + E L + E
Sbjct: 132 NFPDALNILSGAISSGQSIVHAFEYVGKQLDN---EVGNEFKFMAERLLIGEDPDDVLER 188
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + G + D + + R +E +K A + + +
Sbjct: 189 SATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALTSEARASAK 248
Query: 302 MIIFFLPVLILVII 315
+I LPV+ LVI+
Sbjct: 249 IIAC-LPVIFLVIL 261
>gi|291437533|ref|ZP_06576923.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340428|gb|EFE67384.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 312
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 72/231 (31%), Gaps = 5/231 (2%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R L + + + +LR F + L L +
Sbjct: 33 RQALVDRLTATGQIPIVGRRRHFPTLDRRLRRTTFGRKLELR--LAATGLDVTPGEFFAA 90
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L L + G +G A +++ QKR P+ +L
Sbjct: 91 MLAAVAGLWLVGQATLAPFFGPIAGLLGIWAALQFLNWQRQKRIEKFINQLPELARILAN 150
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++G+++ A+ AE++ P EE+ +L+ + A +R +
Sbjct: 151 ATQAGLALRTAIGMAAEELE---APAGEELSKVANQLAVGASMDDALGELADRLPSRELV 207
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
L+ S+R G + +LR L + E + +T +
Sbjct: 208 VLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVSMTSYAV 258
>gi|302870515|ref|YP_003839152.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302573374|gb|ADL49576.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
Length = 290
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 109/304 (35%), Gaps = 17/304 (5%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
A + + A + L L S+A + LR+ + A +RL +
Sbjct: 1 MAAFVVACGVIAGLGLVLAGTGLHPARPSLAQALDALRRTPTAPEEPVGARTRLLAAPLR 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+L +++ ++ L +L L+ P+ +L
Sbjct: 61 ALGLPRQRMRTDLAVLGRPTATHLA-------DQALAVLAGLLLPPVAMSVLA------- 106
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + + A + G+ + Q+R+ ++ A LDL++I + G
Sbjct: 107 SGGVSFAAGMPLWASLAGAAGGWWLAETTVHAEAQRRRDELRYALSAVLDLVVISLAGGA 166
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++QAL D G + + T L A T + ++ +
Sbjct: 167 GLEQALDDACADTHGWAAGRLNRAVATARLLRI--PPWQALGQLGEDTGVVELQELAATM 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ G I DSL + + R+ + E +A S ++++P+++ +L ++ PA
Sbjct: 225 SLAGTEGARIRDSLTIRAATLRAHQAAALEARANSATERMSMPVMLLA-AAYMLFLLYPA 283
Query: 319 ILSI 322
+ ++
Sbjct: 284 VTAV 287
>gi|307261000|ref|ZP_07542682.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306869302|gb|EFN01097.1| Tight adherence protein B [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 199
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 5/161 (3%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++ +GF + + +P+ + +L SG+S+ QAL R +DI
Sbjct: 1 MIAEVIGFIFVIWKLGQRRNR--KLFNEKFPEVIQVLNSATSSGVSLLQALERCGKDI-- 56
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ P+ EE + L+ + F++ Y+R + + G + + +
Sbjct: 57 -TGPIGEEFTIIYKRLARGEDVMAVFQDSYSRYPYKEFYFFISIIRTNLSRGGQMREVIS 115
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L ME +KKA + +++ ++ F L +
Sbjct: 116 RLGRAIADSNKMEQKKKAMTSEARMSAAIVACFPVGFFLFM 156
>gi|194366100|ref|YP_002028710.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
gi|194348904|gb|ACF52027.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
Length = 318
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 106/300 (35%), Gaps = 27/300 (9%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ +S+ S++ A+ + G+ ++ ++ E + S + +S D
Sbjct: 5 ALLGVLSVISVLLALAVWLWGTASSREQRQASMQHAEQRLARGNASAGAPAGASVAAAND 64
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ +++ L L+ AG ++ + L I+L LV ++ ++ ++ +
Sbjct: 65 PPRPASSGRRVLPLDGL--------LQRAGLQTGWKLPIML---LVPGLVLSVVAMLRLG 113
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+G +W+ K ++ + PD LD L+
Sbjct: 114 TVWMFPLTLLLYLLG------------CWLWVMRRTSKLRAQLLHQLPDFLDNLVRLTAL 161
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+ A + + S PL + T+ + A +MD ++ +
Sbjct: 162 GNSLQAAFQVASMQ---TSAPLRGLLDTTVRYARSGMDLDRALALAAQPYRMDVLKVLSV 218
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ S R G L+ + R + E A + +++ ++ LP V++
Sbjct: 219 VIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSETRMSA-WVLGLLPPACAVLMA 277
>gi|297192378|ref|ZP_06909776.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197723021|gb|EDY66929.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 312
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 3/185 (1%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +L +G + +++ KR + P+ +
Sbjct: 88 AVYVVAALLALYFVVGSVFAPFFGLLAVLIGVWGANGFLNWQRAKRTEAFISQLPELTRV 147
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L ++G+++ A+ E++ P EE+ +L+ + A + R
Sbjct: 148 LANATQAGLALRTAIGMAVEELDD---PAREELRRVADQLALGRSLDDALGDLVERLPSR 204
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ LI S+R G +I SLR L + E K+T +
Sbjct: 205 ELTVLVSTLILSNRAGGTIVTSLRNLTETLEERKETRREVTTLLSQVKVTAVAVPVLGLG 264
Query: 310 LILVI 314
+LVI
Sbjct: 265 FLLVI 269
>gi|332162958|ref|YP_004299535.1| type II secretion system protein F domain protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667188|gb|ADZ43832.1| Type II secretion system protein F domain protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 223
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 83/203 (40%), Gaps = 9/203 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
I+ + I+ + L + + I++ + F + ++ K+ +P++
Sbjct: 1 MPIVYSVSIYSVNYFLFHFNNIIALLFIMVSVICF-----QLRLSRKRYYRFFKQNFPES 55
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L ++ + SG SI+Q L R ++I S PL E L L+ + + F + Y R
Sbjct: 56 LLMINMAASSGASINQILERCGQEI---SGPLGVEFNLVCRRLNVGESPESVFYDSYQRF 112
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ++ + + G + + L + E +K + +++V II
Sbjct: 113 KYPEFYFLITIILLNLQQGGQLRELTSRLSEVVNKNKATEQKKAVMTAQIRMSV-NIISI 171
Query: 307 LPVLILVIIGPAILSIIDTMKDH 329
+P+ +++ + I++M H
Sbjct: 172 MPIAFSLLLYFLDPTTIESMWHH 194
>gi|307295329|ref|ZP_07575168.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306878832|gb|EFN10051.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 287
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 4/263 (1%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
D + V + I KL AGF+ + + + R+
Sbjct: 25 ADRRLEARLGMAGDAPALRVPGVLAARGRDGSEIAGKLMLAGFQDRRAADWFVWARMGAT 84
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++ F ++ ++++ + + I L +R +I +P
Sbjct: 85 GGVALAAMLVSRVV----WGGFFVQPLLIVIVAGLTYVGAKQAIHLLAARRARAIMAEFP 140
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDL+L+ +ESG+S+DQ R +A D + + + +A+L +A + +
Sbjct: 141 FLLDLMLMMLESGVSLDQCFRSIARDEAIAVPHHARLIAMLVADLERGMRYDLALDRWAA 200
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + R Q+ G + +LR V E R+M A + + ++ V MI+
Sbjct: 201 RVAVSGARELAALFRQALFQGVELAPALREFVREFTQRRVMRAREAMGGITVRMVVLMIL 260
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
FF+P L +V+ GP +++I DT++
Sbjct: 261 FFMPALFVVLGGPPVVAIFDTLR 283
>gi|253701803|ref|YP_003022992.1| type II secretion system protein [Geobacter sp. M21]
gi|251776653|gb|ACT19234.1| type II secretion system protein [Geobacter sp. M21]
Length = 320
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/303 (11%), Positives = 82/303 (27%), Gaps = 26/303 (8%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ T ++ F + A + + +V R + + S
Sbjct: 1 MLFPIVALTFLAAFGVFLAAFLHLAQRQASGR---TVLKRRLQTMAGERQGEIPEELLSV 57
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + L + +L AG + L+
Sbjct: 58 ISREAER------ASELLTRAPQMRTLGKRLEQAGIQLPVP--------------LLLGS 97
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ LL +L G V + + ++R + +PDAL +
Sbjct: 98 TMAAALGLALLLGLKTQSPLIGLLAGVVVLLVAELMLRVKTERRTTRFTEQFPDALSIAA 157
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G S A++ V ++ PL + A R +
Sbjct: 158 RSLRAGHSFPTAIQLVGQEAPSPVGPL---FRTAYEQQQLGLRMVDALMRMNERIDSLDL 214
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R T + + G ++ + L L R + + + + +L+ ++
Sbjct: 215 RFFTTLVAINSDIGGNLSELLDKLAMTIRERLKIRRQVQVYTAQGRLSGYVLAALPIATF 274
Query: 312 LVI 314
+
Sbjct: 275 GIF 277
>gi|153833200|ref|ZP_01985867.1| TadB [Vibrio harveyi HY01]
gi|156977405|ref|YP_001448311.1| Flp pilus assembly protein TadB [Vibrio harveyi ATCC BAA-1116]
gi|148870471|gb|EDL69386.1| TadB [Vibrio harveyi HY01]
gi|156528999|gb|ABU74084.1| hypothetical protein VIBHAR_06192 [Vibrio harveyi ATCC BAA-1116]
Length = 300
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 10/189 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I L + W F LL L +G +L+ G+ LV +R+ + +PD
Sbjct: 78 ITGSLIVSWYFVVKLLLMSSIWLTLGLSVLLTLFGY-------RYLVTRRRRDFENTFPD 130
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L+ V +G S+ QA+ V + + + E L L + +V +
Sbjct: 131 ALNILMSAVTAGDSLMQAISYVGDVMDNS---IGREFKLMGDRLKLGESPEVVLQRSCKN 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T L + G + L L+ R +E +K A + +++ ++
Sbjct: 188 YPYPEFLFFTVTLRANIARGGQLKGVLARLIRVLVDARTLEKKKMAMTSEARISAKIVAA 247
Query: 306 FLPVLILVI 314
+ ++++
Sbjct: 248 IPLIFMIIL 256
>gi|238917897|ref|YP_002931414.1| hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
gi|238873257|gb|ACR72967.1| Hypothetical protein EUBELI_01984 [Eubacterium eligens ATCC 27750]
Length = 417
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 9/191 (4%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
P L + ++ + +L++KR+ + + + + L + + +G+
Sbjct: 225 PAGSTSPPSLYLVLGMVSVVLIVLLEKKKNKDLLKKRKKELIYDYSEIVSKLTLLLGAGM 284
Query: 199 SIDQALRRVAEDIGG-------QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ A ++ ED P +EM + + A+E F +
Sbjct: 285 TTRMAWHKIVEDYNRKRQSGSIGVRPAYDEMYEADCNMQAGISEAAAYERFGKKCDTREY 344
Query: 252 RNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + + GTS + L V+E+ +R A+ K KL PM + L V+
Sbjct: 345 MKLASLLQTNIKKGTSQLRVLLEHEVNESFEKRKNIAKIKGEEATTKLLFPM-LLMLGVV 403
Query: 311 ILVIIGPAILS 321
+ +I+ PA++
Sbjct: 404 MAIIMIPAVMK 414
>gi|167570102|ref|ZP_02362976.1| hypothetical protein BoklC_09676 [Burkholderia oklahomensis C6786]
Length = 268
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 7/197 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + L + + A + G W+++ QKR+ I R P LD
Sbjct: 45 LILLAAATFVATLWTGLRGGMLAAVATLVAGATLALFWLASRTQKRRLQIVRQLPSFLDG 104
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V G S+ A + + PL + L A ++
Sbjct: 105 IVRLVTLGNSVPAAFQAT---LQTTEAPLRGCLDHVSRMLRSGVEIDRAMVYIAELYRIK 161
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L S +YG L + R E E A S +L+ ++ LPV
Sbjct: 162 EFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAETRLSA-WVLGALPV 220
Query: 310 L---ILVIIGPAILSII 323
++ P S +
Sbjct: 221 GIGSFVIATNPKYFSAM 237
>gi|221195413|ref|ZP_03568468.1| putative type II secretion system protein [Atopobium rimae ATCC
49626]
gi|221184600|gb|EEE16992.1| putative type II secretion system protein [Atopobium rimae ATCC
49626]
Length = 248
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 4/166 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
++ + + V + ++++I + P LD+L + + SG+S D +L
Sbjct: 77 ILSVAGILKIVREVTKRKRIAHQRNAIIKEMPRMLDVLTLGLSSGLSFDSSLDLYCN--- 133
Query: 213 GQSVPLSEEMLLTIAELSFLPN-RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
S LSE+M + R A E + + + + +S +GT + DS
Sbjct: 134 RCSGVLSEKMSQALLSWQMGATTRSTALEEIAAEYGITSLLSFASVVTESLAFGTPLSDS 193
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L R ++ E + + K+ +P+ +P +++ I+GP
Sbjct: 194 LERQAGTIRDDQRAALEAEIEKVPVKMLLPLGTLIVPAMLIAILGP 239
>gi|312883312|ref|ZP_07743038.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368928|gb|EFP96454.1| putative Flp pilus assembly protein TadB [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 304
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 76/208 (36%), Gaps = 9/208 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + SL++ + +FL++ + ++ ++L + +I
Sbjct: 63 RIKISLSVFEPNLVRNISLFLVISLTLLYFVNELFFRLNLILSIVLIFPLECLLFY---- 118
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ +++ +PDAL++L + SG SI A V + + + +E +
Sbjct: 119 -KYMGGRKKKIFVENFPDALNILSGAISSGQSIVHAFEYVGSQL---NNDVGKEFKIISE 174
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L N E + A+ + G + D + + R +E
Sbjct: 175 RLLIGENPDDVLERSGIQYPYLEYFFFISAIRINISRGGQLKDIINKINRLMFESRSLEK 234
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+K + + +++ I+ LP+ L ++
Sbjct: 235 KKNSLTAESRMSAK-ILGVLPIGFLFVL 261
>gi|325264273|ref|ZP_08131004.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
gi|324030344|gb|EGB91628.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. D5]
Length = 224
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 4/196 (2%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ Y F A ++ + +W + + ++++ + + ++ + +
Sbjct: 1 MLLGMTAYLFYDSWIAALVFIPALYIYLILWKARVCREKEQEFREQFRVSIQTMASALNI 60
Query: 197 GISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
G S++ A+R A D+ + + +E I +L + +R + V N
Sbjct: 61 GYSVENAVRETARDLKPLFRRDSRIRKEFERMIHQLDINQPVEQVMSELADRVSQEDVEN 120
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ R G LR V + + E E + KL ++ +P IL
Sbjct: 121 FVIVFSAAKRTGGDSISILRSAVRDISDKIEAEKEIQTLLASKKLEFK-VMCIIPFGILF 179
Query: 314 IIGPAILSIIDTMKDH 329
+ A + + +
Sbjct: 180 YMRLAFPEFMQVLYGN 195
>gi|261251277|ref|ZP_05943851.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260938150|gb|EEX94138.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 304
Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 92/254 (36%), Gaps = 12/254 (4%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+++S ++L +++ + + A +++ +LR + + + +
Sbjct: 20 RTRQNSKLNKLIQMEAEFEGVKGVRSVIDAQQFEKDFKARLRQ---QYKAMVKVFQPHMP 76
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ ++F + I I+ + + ++ ++ L Q+++ K
Sbjct: 77 LKLLVFFSVSSIAIYTINAFFFRQDFVTCLVILEP-----ILFVMFFIKLKQRQEEKFKT 131
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDAL++L + SG SI A V + + + + E L + E
Sbjct: 132 NFPDALNILSGAISSGQSIVHAFEYVGKQL---NNEVGNEFKFMAERLLIGEDPDDVLER 188
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + G + D + + R +E +K A + + +
Sbjct: 189 SATTFPYLEYFFFASTIRINLSRGGQLKDVINRINRLMFDSRAVEKKKNALTSEARASAK 248
Query: 302 MIIFFLPVLILVII 315
+I LPV+ LVI+
Sbjct: 249 IIAC-LPVIFLVIL 261
>gi|25029119|ref|NP_739173.1| hypothetical protein CE2563 [Corynebacterium efficiens YS-314]
gi|259505885|ref|ZP_05748787.1| bacterial type II secretion system protein F domain protein
[Corynebacterium efficiens YS-314]
gi|23494406|dbj|BAC19373.1| hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166559|gb|EEW51113.1| bacterial type II secretion system protein F domain protein
[Corynebacterium efficiens YS-314]
Length = 94
Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 52/89 (58%)
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ RT + +R +A++Q+D YG SI D LR E R +R AE+KA L K+
Sbjct: 4 LDGLATRTTVPDLRRFVRAVVQADAYGISIADVLRTQADEMRLKRRQRAEEKAQKLPVKV 63
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
P+++ LPVL +V++GPA +SI+D
Sbjct: 64 LAPVMLCILPVLFIVVMGPAAMSIVDAFS 92
>gi|167562911|ref|ZP_02355827.1| hypothetical protein BoklE_10150 [Burkholderia oklahomensis EO147]
Length = 258
Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 7/197 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L ++ + L + + A + G W+++ QKR+ I R P LD
Sbjct: 35 LILLAAATFVATLWTGLRGGMLAAVATLVAGATLALFWLASRTQKRRLQIVRQLPSFLDG 94
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V G S+ A + + PL + L A ++
Sbjct: 95 IVRLVTLGNSVPAAFQAT---LQTTEAPLRGCLDHVSRMLRSGVEIDRAMVYIAELYRIK 151
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L S +YG L + R E E A S +L+ ++ LPV
Sbjct: 152 EFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELAAMSAETRLSA-WVLGALPV 210
Query: 310 L---ILVIIGPAILSII 323
++ P S +
Sbjct: 211 GIGSFVIATNPKYFSAM 227
>gi|84385680|ref|ZP_00988711.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
12B01]
gi|84379660|gb|EAP96512.1| hypothetical Flp pilus assembly protein TadB [Vibrio splendidus
12B01]
Length = 300
Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 76/191 (39%), Gaps = 11/191 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I + W + L L +G+ ++ G+ LV +R+ + +PD
Sbjct: 78 ITGSIIASWYIVVELLSITNTWLVLGSSMVFTLCGY-------RFLVTRRRREFENTFPD 130
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L+ V +G S+ QA+ V + + P+ E L L + +V +
Sbjct: 131 ALNILMSAVTAGDSLMQAISYVGDVM---HNPIGREFKLMGDRLKLGESPEVVLQRSCKN 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + + G + + L+ R +E +K A + +++ I+
Sbjct: 188 YPYPEFLFFTVTIRANIARGGQLKGVMARLIRVLVDSRTLEKKKMAMTSEARISAK-IVA 246
Query: 306 FLPVLILVIIG 316
+P++ ++I+
Sbjct: 247 AIPLIFMLILN 257
>gi|149188859|ref|ZP_01867149.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
gi|148837279|gb|EDL54226.1| hypothetical Flp pilus assembly protein TadB [Vibrio shilonii AK1]
Length = 300
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 8/205 (3%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L R + I I G I Y + + L +
Sbjct: 61 PTLTILGPRSSLYIALYITGSIIASWYIVIELLSMTNSWLVLSLSLIFTVFGYRFLVG-- 118
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+R+ + +PDAL++L+ V +G S+ QA+ V E + + P+ E L L
Sbjct: 119 --RRRRDFENTFPDALNILMSAVTAGDSLMQAISYVGEAM---NNPIGREFKLMGDRLKL 173
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ +V + T + + G + L L+ R +E +K A
Sbjct: 174 GESPEVVLQRSCKNYPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVDSRTLEKKKMA 233
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIG 316
+ +++ I+ +P++ VI+
Sbjct: 234 MTSEARISAK-IVAAIPLIFTVILN 257
>gi|15602713|ref|NP_245785.1| hypothetical protein PM0848 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721157|gb|AAK02932.1| TadB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 291
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 10/190 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I I I++ + + + V L + + + Q +P
Sbjct: 69 ISGAIFLILFFINVAYVRLERWLFVLIFVCLFIVLVWKLGQY-------RNQKMFNAMFP 121
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + ++ G + Q+L R +D+ GQ L EE L+ + FE+ Y+
Sbjct: 122 EVIQIMNAAATGGAGLLQSLERCGKDLTGQ---LGEEFKAIHKRLALGEDPMSVFEDSYS 178
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + G I + + L + ME +KKA + +++ ++
Sbjct: 179 RYPYKEFYFFITIIRTNLSKGGQIREVITRLGRVIADSKKMEQKKKAMTSEARMSAFIVA 238
Query: 305 FFLPVLILVI 314
F L +
Sbjct: 239 SFPIAFFLFM 248
>gi|225570081|ref|ZP_03779106.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
15053]
gi|225161551|gb|EEG74170.1| hypothetical protein CLOHYLEM_06177 [Clostridium hylemonae DSM
15053]
Length = 251
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 79/202 (39%), Gaps = 4/202 (1%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
GI+ L + + AV L+ V +W ++++ SS + + DA+ L
Sbjct: 22 GILKSTVITVLTAWLYYRSAIAVPLLAPVWIWQYRIWKKECLRRKSSSFQLQFKDAIQSL 81
Query: 191 LICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +G S++ A + +++ + +E+ + ++++ + E F R +
Sbjct: 82 SSALSTGYSVENAWKEAEKELKLLYRENDRIRKELHIIVSQIRVNVPMEQIMEEFAERVR 141
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ VRN T + + G + +R + + ++ E + ++ +
Sbjct: 142 QEDVRNFTAVFAAAKKSGGDMVAIIRNTAGQIGDKVEVKREIDTILASREYEFK-VMSAV 200
Query: 308 PVLILVIIGPAILSIIDTMKDH 329
P +I+ + + + + +
Sbjct: 201 PYVIIGYMSLSFPEFMQNLYGN 222
>gi|319783870|ref|YP_004143346.1| type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169758|gb|ADV13296.1| Type II secretion system F domain [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 321
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/263 (15%), Positives = 104/263 (39%), Gaps = 14/263 (5%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ S RT ++ ++ K++ + +LV L AG +S + +R +I
Sbjct: 31 AGRSDKRTAINRRMKLQENKISQEQVLVQLRKERGLD-AGTPL-FSADRFRALRTQSGMI 88
Query: 127 -----FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
FL++ + + + +L + P + + ++R
Sbjct: 89 MPLSKFLMITCGVAMAMALVAIWYGLPPLMGFVLFVVLMPLLPVLTLRFKRKRRLKRFGM 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+AL+L+ +++G + A+ VA ++ P+ E + E+++ + A +
Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVAREMPD---PIGSEFGVIADEVTYGSDLVSALNS 205
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++R + + A+ G ++ + L L + R + + +A + +++
Sbjct: 206 LFDRVGQEDLPLFVTAVSIQTSSGGNLREILDGLATTIRERGKLRRKVRAIATEGRMSA- 264
Query: 302 MIIFFLPVLI---LVIIGPAILS 321
I+ +P L+ ++ + P S
Sbjct: 265 YILTAVPALLFAAIMALMPGFYS 287
>gi|319943384|ref|ZP_08017666.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
gi|319743199|gb|EFV95604.1| type II secretion system protein F domain protein [Lautropia
mirabilis ATCC 51599]
Length = 291
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 7/183 (3%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + V+ + PS+ I +L +R+ R PDA+ L+ V +G S+ A
Sbjct: 81 WLLTGSLFLVVAVIVALGALPSLLIRHLGAQRRKLFARQLPDAMMLIAGAVRAGASMTLA 140
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
LR++A ++ P +E L + EL A N R D +R A+ ++
Sbjct: 141 LRQMASELP---APGGQEFELMLRELRLGVTLDDALLNLERRMGCDDLRLFGAAVRIANE 197
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAIL 320
G ++ ++L L R + +E + A + ++ ++ LP+ + L I P +
Sbjct: 198 SGGNLAETLERLADTIRKKMALEDKIMALTAQGRMQG-WVMVLLPLGVGAALFAIEPTAM 256
Query: 321 SII 323
+ +
Sbjct: 257 APL 259
>gi|254451819|ref|ZP_05065256.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
antarcticus 238]
gi|198266225|gb|EDY90495.1| type II/IV secretion system protein, TadC subfamily [Octadecabacter
antarcticus 238]
Length = 122
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 63/122 (51%)
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
+ RVA+++ + +SEE L+ AE+ +R+ A + R ++ V + + QS
Sbjct: 1 MTRVAQNLSMVNPAISEEFLMCQAEILAGRHREQALVDMAERIGVEEVNSFVALISQSME 60
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
YGTSI S+ E R R ++A++KA L +++ M LP L L+ +GP I+ +
Sbjct: 61 YGTSISASMNAYAIEMRDAREIKAQEKANKLPVQMSGVMASMMLPALFLITLGPTIIRYM 120
Query: 324 DT 325
Sbjct: 121 RM 122
>gi|283777929|ref|YP_003368684.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436382|gb|ADB14824.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 318
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 104/304 (34%), Gaps = 27/304 (8%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L + + T + I + +L R KS +R + ++
Sbjct: 3 SLLITVLTFACVSLCIVGFSNLAF---DLFFRDKSRVDDRLREAFGDEMRDRAKTS---- 55
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
K L+ + + + + AG R + + + L +
Sbjct: 56 --PLFKDLQQMAAGTMIDTPTLSRRVQTIIDQAGLRITSAQLTSMSLGLAI--------- 104
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
L L+ I + P + L ++R+ ++ R PDA D++
Sbjct: 105 -----LLGLATGIATLKWWIAIPVAIAAIPLPLWVVLKLRRRRRDTLARQLPDAFDVMSR 159
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G ++ A + +A D + PL EE + R VA + RT + ++
Sbjct: 160 ALRAGQTVPAAFQVIATDF---NSPLKEEFAHCYEQQHLGIERDVALRDLARRTSVMELQ 216
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
ALI + G ++ + L L R + +A + ++ +++ LP +I
Sbjct: 217 IFVVALIMHGKTGGNLAELLGNLALLLRKRGKLHDRIRALTGEGRMQA-VVLIALPAVIF 275
Query: 313 VIIG 316
++
Sbjct: 276 GVMY 279
>gi|320009994|gb|ADW04844.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 270
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 12/202 (5%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL------VQKRQSSIKRAWPD 185
+ +F + + + + + S + + I R P
Sbjct: 72 LWAMFLGVWAVGWVLVGGIAGCGVGLLAAYGVRRWRRSGKGCAVAGQEADVALIARQLPI 131
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
DLL C+ +G +A V E + G P+ E + T A + A+ F
Sbjct: 132 TADLLASCLSAGAGPREAAEAVGESVAG---PVGERLARTAAVILLGGEPDEAWRRFGE- 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + ++ G + + L E R+ER A +A G +T P+ +
Sbjct: 188 --LPGAAPLARCMARASSTGAPAAEPVSGLADEIRAERASAAVARAQRAGVLITAPVGLC 245
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
FLP + V + P ++ + +
Sbjct: 246 FLPAFLAVGVAPVVIGLATGLS 267
>gi|304405043|ref|ZP_07386703.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345922|gb|EFM11756.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 274
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 5/196 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ +L Y F + + ++G P + L++KR+ ++ + +AL
Sbjct: 41 FLFSAAAGLIGAFVLFYTFYQSLVVAFGLVWLGILIPRFRNAGLLEKRRVRLQLQFKEAL 100
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSV----PLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + +G S++ A D+ + E + + + F
Sbjct: 101 YSVTSSLAAGRSVENAFIAAEADLQLLYPGGTADIVREFAMIRHRMENGETLESGLSQFA 160
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
NR Q++ + R G + D +R + ++ E K I
Sbjct: 161 NRAQLEEITQFVDVFSTCKRTGGDLVDVIRRTSQVIGEKLDIQQEIAVMLAQ-KRFESRI 219
Query: 304 IFFLPVLILVIIGPAI 319
+ +P + + + A
Sbjct: 220 LTAVPFVFIAGLNLAA 235
>gi|304311187|ref|YP_003810785.1| type II secretion system protein F [gamma proteobacterium HdN1]
gi|301796920|emb|CBL45133.1| type II secretion system protein F [gamma proteobacterium HdN1]
Length = 295
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/249 (15%), Positives = 91/249 (36%), Gaps = 5/249 (2%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII- 126
+ ++ L + + +V ++ A +R ++ + +R V +I
Sbjct: 7 GLQQFADEHARLLIFLLSTFAFAGLGYVAIVVARISFALYRRQFYSQVDQGLRDVFMLID 66
Query: 127 -FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + G F + + ++ G + AP + + + R + PD
Sbjct: 67 PGQVFAVTIGLGILICPLLFFFVSPFSAVVGGMLIMFAPRYVLLEMKKNRSDKFVKQMPD 126
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL + ++SG+++ ++L+ + + Q PL++E + E + +F + R
Sbjct: 127 ALAAMSTALKSGLNLVKSLQ---QVVRNQPEPLAQEFAQVLVEYRIGTDLNDSFGDLAKR 183
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
V A+ + G ++ + L R +E + KA + + +
Sbjct: 184 IDRPEVVLMNSAIRINRSVGGNLAATFENLADSLRETSKVEGKIKAMTAMGSSQGKLALA 243
Query: 306 FLPVLILVI 314
V+ LV
Sbjct: 244 VPIVVALVF 252
>gi|289424541|ref|ZP_06426324.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289428815|ref|ZP_06430495.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|295129802|ref|YP_003580465.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|289155238|gb|EFD03920.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289157816|gb|EFD06039.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|291377230|gb|ADE01085.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|313814294|gb|EFS52008.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA1]
gi|313834346|gb|EFS72060.1| type II secretion system F domain protein [Propionibacterium acnes
HL056PA1]
gi|314974780|gb|EFT18875.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA1]
gi|314980264|gb|EFT24358.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA2]
gi|314985439|gb|EFT29531.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA1]
gi|314987403|gb|EFT31494.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA2]
gi|315082165|gb|EFT54141.1| type II secretion system F domain protein [Propionibacterium acnes
HL078PA1]
gi|315086398|gb|EFT58374.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA3]
gi|315097273|gb|EFT69249.1| type II secretion system F domain protein [Propionibacterium acnes
HL038PA1]
gi|315106264|gb|EFT78240.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA1]
gi|327445234|gb|EGE91888.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA2]
gi|327447319|gb|EGE93973.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA1]
gi|328758434|gb|EGF72050.1| type II secretion system F domain protein [Propionibacterium acnes
HL020PA1]
gi|332674641|gb|AEE71457.1| hypothetical protein PAZ_c02540 [Propionibacterium acnes 266]
Length = 249
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 6/194 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 57 LAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEALL 116
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 117 MLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLA---SV 170
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R+ Q + ++ G I + L ++ + + EKKA G P++ LP
Sbjct: 171 EVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLP 230
Query: 309 VLILVIIGPAILSI 322
+LV + P I +
Sbjct: 231 AFLLVGVVPIIAGM 244
>gi|170724974|ref|YP_001759000.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
gi|169810321|gb|ACA84905.1| type II secretion system protein [Shewanella woodyi ATCC 51908]
Length = 302
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 7/167 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V I + +GF ++ +KR+++ +PDAL++++ V SG SI QA+ V +
Sbjct: 101 VWLPIALPVLGFFWGWNYLM---RKRKNAFDETFPDALNIMMSAVSSGESIMQAIAYVGQ 157
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ Q + E L + F+ R + + G +
Sbjct: 158 SLDNQ---IGLEFRDMGERLKLGEPPEQVFKRACKRFPYPTFLFFIVTIRANMSRGGQLK 214
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ L+ R ++ +K A + +L+ I+ LP ++++
Sbjct: 215 SVMARLIRVLMDARTLDKKKAAMTSEARLSAK-IVASLPFFFMILLS 260
>gi|313793203|gb|EFS41270.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA1]
gi|313802708|gb|EFS43926.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA2]
gi|314964615|gb|EFT08715.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA1]
gi|315078730|gb|EFT50756.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA2]
gi|327457152|gb|EGF03807.1| type II secretion system F domain protein [Propionibacterium acnes
HL092PA1]
Length = 249
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 6/194 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 57 LAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEALL 116
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 117 MLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLA---SV 170
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R+ Q + ++ G I + L ++ + + EKKA G P++ LP
Sbjct: 171 EVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLP 230
Query: 309 VLILVIIGPAILSI 322
+LV + P I +
Sbjct: 231 AFLLVGVVPIIAGM 244
>gi|225026644|ref|ZP_03715836.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
gi|224956014|gb|EEG37223.1| hypothetical protein EUBHAL_00895 [Eubacterium hallii DSM 3353]
Length = 445
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 82/178 (46%), Gaps = 11/178 (6%)
Query: 151 GAVILIGYVGFCAP---SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
G +IL V P + + +K Q +R +P + LL + + +G+S A++R+
Sbjct: 262 GILILFVTVCIFIPLHNYLKLQEEGKKCQEQAERDFPVIVHLLTLYMGAGLSFFSAVKRI 321
Query: 208 AED------IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+++ + E+M+ ++S +++ A +++ + + D + + LIQS
Sbjct: 322 SQNYQKQRELDDSKKYAFEKMMRMEQQMSNGVSQREACQDWGMQFRTDSYQKLSLILIQS 381
Query: 262 DRYGTSIGDSL-RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
G+ L E +R+ A+K+ +L PMI+ L ++L+++ PA
Sbjct: 382 FTKGSKEAAMLMEAEEREAFHKRIDRAKKEGEEASTRLLFPMIL-LLCQVMLLVMYPA 438
>gi|302335344|ref|YP_003800551.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
gi|301319184|gb|ADK67671.1| Type II secretion system F domain protein [Olsenella uli DSM 7084]
Length = 213
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 78/207 (37%), Gaps = 4/207 (1%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
L+ + + + + + + S+ ++ +
Sbjct: 3 AALVASVAGMASASFLGSFVVVGTGGSRSHERLSMMADELAGRIREIPAVRSLELAARSR 62
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL- 232
+ +SS P LD++ + + +G+S D +L ++ LS E +
Sbjct: 63 ELRSSCLSELPTMLDVVNLGLSAGLSFDASLELYCDNYET---ELSSEFGGALLSWRVGA 119
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R A R + +R + +++Q+ +G+ + + L R E+ + E++
Sbjct: 120 VGRGDALLGLAERLDLAALRTFSTSVVQALEFGSPLAEVLERQSEVIREEQRSQVEEEIE 179
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ ++ +P+ +P +++ I+GP +
Sbjct: 180 KVPVRMLIPLGTLIVPAMLVAILGPLV 206
>gi|289643196|ref|ZP_06475323.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289506967|gb|EFD27939.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 349
Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 34/228 (14%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G + P + V I++G + + Q+RQ+ + P ALDL
Sbjct: 122 AAFSAAAGLGPAVILPVPVGVTVGIIVGMIAARLLASIPDQDAQRRQARLVEDLPLALDL 181
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF------- 242
+ C+ +G I AL VA +GG PL E+ + L + A
Sbjct: 182 IAACLTAGAPIVAALDIVAGAVGG---PLGTELGMVSRSLRLGASMAEACGRLLGPEPSS 238
Query: 243 ----YNRT--------------------QMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
R + + +AL +S+ G + +L L +
Sbjct: 239 SRPAAKRWTRLVPVGPAPGGLGRPTATAEAHEIAAFARALHRSEESGARLAAALGRLADQ 298
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
TR+ R A A G P+ + FLP + + + P ++ +
Sbjct: 299 TRARRQERALTAARRAGVTAVAPLGLCFLPAFVALGVVPVVMGAGSAL 346
>gi|271962853|ref|YP_003337049.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
gi|270506028|gb|ACZ84306.1| hypothetical protein Sros_1308 [Streptosporangium roseum DSM 43021]
Length = 311
Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/316 (13%), Positives = 97/316 (30%), Gaps = 16/316 (5%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ +V L + L R+ ++ RE ++ + D S R
Sbjct: 5 LLVGSVLGLGLFLLIRALFPARPGLVTRLLALDAAREGTTVPRMQLVLPDEEVSAFR--- 61
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-IIWI 135
++L + + + L G S L ++++ + L+ ++
Sbjct: 62 -RNLGVRLARFYAARGWEARSAKADLALLG----KSFEGFLATKMLLAVSGLLAFPLLLG 116
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ + + + V F P + I + + + LDL+ + +
Sbjct: 117 WLVVMGWGVSPTIPLWVALAAAGVFFILPDLQIKRDAARMRRDFRHVVGAFLDLVAMNLA 176
Query: 196 SGISIDQALRRVAEDI------GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
G + +AL G + ++ A + +D
Sbjct: 177 GGRGVPEALMMAVSVGSPGADDEGANWAMNRIREALGNARIVGITPWQALGQLGDEINVD 236
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R+ + AL G + SL + R L E E +A + V +
Sbjct: 237 ELRDLSAALGLVADDGAKVRASLTARAATLRRRELAEVEGQAGERSQSMLVAQ-LLLCAG 295
Query: 310 LILVIIGPAILSIIDT 325
++ + PA + ++ +
Sbjct: 296 FVIFLSFPAAMKMLGS 311
>gi|218677458|ref|ZP_03525355.1| putative component of pilus protein [Rhizobium etli CIAT 894]
Length = 136
Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + +P G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPSMLIALLVAIAVFATFYTIAVPFFERGDLSKRMKAVSTEREQIRARER 60
Query: 61 TS--LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + LR+++++S+R V++ NL+ LVD+N VNKLRAAG RSE +LN L
Sbjct: 61 ARMNTEPGAGKASLRSQNNRSVRQIVERFNLRKALVDDNTVNKLRAAGLRSENALNTFL 119
>gi|153853655|ref|ZP_01995035.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
gi|149753810|gb|EDM63741.1| hypothetical protein DORLON_01026 [Dorea longicatena DSM 13814]
Length = 376
Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 7/182 (3%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ ++IG + + I ++R+ + +P+ + L + + +G+++ +A R+
Sbjct: 194 PVITVMGMMIGILLYALQKQNIRKAEEERKKQMIEDYPEVISKLTLYLGAGMTVKKAWRK 253
Query: 207 VAEDI-----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+ E + EEM T E+ +ENF R + L Q+
Sbjct: 254 ITEGYMKEKEDENERYVYEEMRQTCHEMDSGVTEAEGYENFGRRCDLQIYIRLGALLSQN 313
Query: 262 DRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
R GT + + L++ + ER A++ G KL +PM L V+++++I PA L
Sbjct: 314 LRKGTKGLSELLKLESIQAFEERKARAKRLGEEAGTKLLLPM-FLMLVVVLIIVIVPAFL 372
Query: 321 SI 322
++
Sbjct: 373 TM 374
>gi|238897544|ref|YP_002923223.1| putative tight adherance operon protein C [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465301|gb|ACQ67075.1| putative tight adherance operon protein C [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 275
Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 91/216 (42%), Gaps = 3/216 (1%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
V ++ + K+ + + L + + +F ++ +F +
Sbjct: 33 VNDKKVETEKNKPALKTKMTYSVIKIPDFLLEKNKIIFCIASLFALIFAAALFFWKIEYS 92
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + I +GF + I +++ ++ + ++P +D+ C+++G++I+ A
Sbjct: 93 KNILITLFLTSSIFSIGFY--QLLIKSIIFRKTRLMLSSFPFFIDMTAACIQAGMTIENA 150
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L AE+ + ++ ++ + + Q A + Y ++ A+ S
Sbjct: 151 LTYSAENFYKINEDIASLIIQVVRKAEV-HGLQNAMKTLYQDVSFLEIKMFCNAVQNSVD 209
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+G+S+ + L ++ R +LME+E+K + L KLT
Sbjct: 210 FGSSVYEHLMKFSTDIREIQLMESEEKISKLSVKLT 245
>gi|307332438|ref|ZP_07611502.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306881907|gb|EFN13029.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 312
Score = 76.8 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 89/296 (30%), Gaps = 30/296 (10%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ + + + +G + + +E R + R R
Sbjct: 4 LATAALGATLVCGALGVVG-------VHTYVRGKEQQRALIDRLSETGPLPGTGRARRFA 56
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ ++ +L + +L A G + + + + F
Sbjct: 57 GVDRRLRTTSLGR-----KLELRLAATGLEITPGEFFVYTAGAAAGLWLIAASFLAAFF- 110
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + ++ QKR P+ +L ++G+
Sbjct: 111 --------------GPIAAVIAVWGAFAFLGWQRQKRIERFINQLPELSRILANATQAGL 156
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++ AL A+++ P EE+ A+L+ + A E R + L
Sbjct: 157 ALRTALGMAADEME---APAGEELAKVAAKLAVGHSIDDALEELAERLPSRELVVLVTTL 213
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ S+R G ++ SLR L + E + +T ++ +L++
Sbjct: 214 VLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQVTVTAYVVPLLGIGTLLLM 269
>gi|257790307|ref|YP_003180913.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830125|ref|ZP_08163582.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474204|gb|ACV54524.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487592|gb|EGC90030.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 312
Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 81/278 (29%), Gaps = 10/278 (3%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
+R + ++ + + + ++ L+
Sbjct: 28 LLRRRDATARRERLRKAADVRDAQEGFDAGSRLVRYATALSQRIALGATEALSRRLRLSR 87
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + AG S + + + G + L + A
Sbjct: 88 ARAWFCARAKRAGLEQAVSPEGFCEASMRLACAGGLAGALVGSVLSTELAVLGAVAGVAG 147
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ ++R ++ + L+++ + + SG+S D+
Sbjct: 148 GAAAM------PRAVKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDS 201
Query: 214 QSVPLSEEMLLTIAELSFLPN-RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ + S R+ A + + +++S R+G+S+ + L
Sbjct: 202 ---DLARACVGAQHAWSLGLTNREDALRDLAASYDSPLFARVVENMVRSLRFGSSLAEGL 258
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+E R+ + E++ A K+ VP LP +
Sbjct: 259 ESAAAEARAVHRAQVEERVAKAPVKMMVPTGTLILPAM 296
>gi|327334809|gb|EGE76520.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL097PA1]
Length = 249
Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 6/194 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 57 LAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGFGRLESSGHRRMEQHRAAQLPEALL 116
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 117 MLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLA---SV 170
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R+ Q + ++ G I + L ++ + + EK+A G P++ LP
Sbjct: 171 EVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKRARKAGVDAIGPLVCCHLP 230
Query: 309 VLILVIIGPAILSI 322
+LV + P I +
Sbjct: 231 AFLLVGVVPIIAGM 244
>gi|284045232|ref|YP_003395572.1| type II secretion system F domain protein [Conexibacter woesei DSM
14684]
gi|283949453|gb|ADB52197.1| Type II secretion system F domain protein [Conexibacter woesei DSM
14684]
Length = 275
Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 3/177 (1%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V+ I + P +L + ++ GF AP +W+ + R ++
Sbjct: 76 VMAIKGGAAVLGLALTLPLGALLPGRLPLVVPFVLPLGGFVAPDLWLRRRARARGREMEA 135
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
PD LDLL + + +G+ +++A+ + + L+ E E+ R+ A
Sbjct: 136 ELPDLLDLLRVALGAGLPLERAV---GDVADRATGLLAREWRTVAVEIGLGMPRERALVA 192
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
R V + L ++ R+G +G++L E RS R +++AA PK+
Sbjct: 193 LAERCPTPGVGVLVRTLERAARHGAPLGEALAAQAREARSTRARRLDEQAARAAPKI 249
>gi|294495979|ref|YP_003542472.1| type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
gi|292666978|gb|ADE36827.1| Type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
Length = 741
Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 85/209 (40%), Gaps = 4/209 (1%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
++ +I+ + + D L + ++ G+ P +
Sbjct: 463 EYTLIITGPIGACIIIIPLLLNMNDGGLPSGIIDFIDDYLVFGFFATVVPLTIFYEKKNR 522
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ +++ PD L L E+G+++ +++ ++ LS+E+ ++S+ N
Sbjct: 523 RKKKLEQNIPDLLKKLASTNETGMTLQDSIKLMSRKETDT---LSKEIKKVWRDISWGVN 579
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F NR + V + + +++ IG L V + SE+ M+ E ++ S+
Sbjct: 580 INDSLVRFANRLRTQVVARSFTLITKANESSGDIGQVLLVASRDASSEQDMKRE-RSMSM 638
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ + I F + V ++ +I L+ +
Sbjct: 639 MIYIVIIYIAFLVFVGVIYVISTTFLTEM 667
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/308 (9%), Positives = 95/308 (30%), Gaps = 32/308 (10%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
+P ++++ + + + K T+ + L + + +
Sbjct: 38 LPQTNKISFKQKITNSSRHLKTRLKLNGTNNSEKDYGHILFELAKNIPFALLGEKIKEKG 97
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQL--- 148
N+ +L+ A R S + + + ++ I ++ +
Sbjct: 98 DRYSNLQLQLKQA--RIPVSYEMYVSAGIFYSVVAGIFGALLGFLFAYLIFTIIGLPDQL 155
Query: 149 ------------------------RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +++G + + + + +R+++I + P
Sbjct: 156 TGIQVNSSFAWLLAYRDIIIGFFIVIFLTLMLGGITYVLFMFYPAFQAGERKNNIDQQLP 215
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFY 243
A+ + G++I + +A+ ++ E+ + ++ + + + A N
Sbjct: 216 YAVTFMYALTRGGMNILDVFKSLAKA-EDTYGEVAVEVDTIVKDMEYFGHDIRTALANIS 274
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ T D ++ L+ G I + + + +++ + +L +
Sbjct: 275 STTPSDRFQDLIYNLVTIIDSGGDIAKYFQDKSDQYLQKSMVDQKGFLETLALLSESYVT 334
Query: 304 IFFLPVLI 311
F L
Sbjct: 335 AFVAGPLF 342
>gi|299532822|ref|ZP_07046209.1| type II secretion system protein [Comamonas testosteroni S44]
gi|298719046|gb|EFI60016.1| type II secretion system protein [Comamonas testosteroni S44]
Length = 327
Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 78/208 (37%), Gaps = 8/208 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + + +L+ + I + L +I + A++++G F
Sbjct: 82 RTGWPVPAILLGTVGAGIFYGSLALIVAAFLIVGFAVGWLAGSAALVVLGIGFFFL---- 137
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ QK ++ + + P LD + V G S+ A + A PL M +
Sbjct: 138 LFTRAQKYRTRLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKD---PLQSVMEKAAS 194
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A + +T++D + L S RYG + L + + R E
Sbjct: 195 LARAGMDLENAVTHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQ 254
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + +L+ ++ LPV + +I
Sbjct: 255 DLSAMTAETRLSA-WVLSLLPVAVGCLI 281
>gi|90412172|ref|ZP_01220178.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
gi|90326896|gb|EAS43281.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum 3TCK]
Length = 302
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/210 (15%), Positives = 78/210 (37%), Gaps = 7/210 (3%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+S ++ + + + ++ G L+ +GF
Sbjct: 58 LLMNFSPAFAMLGNKAWLKLSIFMMLLTSIGVYINNYLLLLNSYWLPFLMPALGFLWGWA 117
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+ ++KRQ+ ++A+PDAL++++ V +G S+ Q++ V + + + L
Sbjct: 118 WL---IKKRQNEFEQAFPDALNIMMSAVTAGESVMQSISYVGKTLDNKVGDL---FQDMG 171
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + F+ + + G + + L+ R ++
Sbjct: 172 ERLKLGEPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKAVMARLIRVLVDSRTLD 231
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+K A + +L+ I+ LP + +VI+
Sbjct: 232 KKKSAMTSEARLSAK-IVASLPFIFMVILS 260
>gi|317489756|ref|ZP_07948255.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
gi|316911102|gb|EFV32712.1| hypothetical protein HMPREF1023_01954 [Eggerthella sp. 1_3_56FAA]
Length = 312
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 82/278 (29%), Gaps = 10/278 (3%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
+R + ++ S + + ++ L+
Sbjct: 28 LLRRRDATARRERLRKAADVRDAREGFDSGSRLVRYATALSQRIALGATEALSRRLRLSR 87
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ + AG S + + + G + L + A
Sbjct: 88 ARAWFCARAKRAGLEQAVSPEGFCEASMRLACAGGLAGALVGSVLSTELAVLGAVAGVAG 147
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ ++R ++ + L+++ + + SG+S D+
Sbjct: 148 GAAAM------PRAVKRAQRERADGLESDLSEMLEVVALGLRSGLSFDRGFALYGSHFDS 201
Query: 214 QSVPLSEEMLLTIAELSFLPN-RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
L+ + S R+ A + +++++S R+G+S+ + L
Sbjct: 202 ---DLARACVGAQHAWSLGLTNREDALRDLAASYDSPLFARVVESMVRSLRFGSSLAEGL 258
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+E R+ + E++ A K+ VP LP +
Sbjct: 259 ESAAAEARAVHRAQVEERVAKAPVKMMVPTGTLILPAM 296
>gi|210614118|ref|ZP_03290054.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
gi|210150819|gb|EEA81827.1| hypothetical protein CLONEX_02267 [Clostridium nexile DSM 1787]
Length = 220
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 70/181 (38%), Gaps = 8/181 (4%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ A++L Y+ + W ++KR++ + + +A+ L + G S++ A+R
Sbjct: 10 CLCAILLAPYLVYFL-KSWEKQWIEKRKNVFQLQFKEAVQSLATALNVGYSVENAMREAL 68
Query: 209 EDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+D+ + E + +L + + F RT + V+ + + R G
Sbjct: 69 KDLQIIYKKDELIVREFRYMVRQLDVNVTMEKVLQEFSQRTGEEDVQTFVTVFVMAKRSG 128
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSI 322
+ +R V + + + E KL ++ +P ++ + P + +
Sbjct: 129 GDMIAIIRNTVQQMSEKADIRREIGTIIASKKLEFK-VMSAIPFGMICYMKFSFPEFMGV 187
Query: 323 I 323
+
Sbjct: 188 L 188
>gi|264680615|ref|YP_003280525.1| type II secretion system protein [Comamonas testosteroni CNB-2]
gi|262211131|gb|ACY35229.1| type II secretion system protein [Comamonas testosteroni CNB-2]
Length = 321
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 8/208 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + + +L+ + + L +I + + A++++G F
Sbjct: 76 RTGWPVPAILLGTASAGLFYGGLVLIAVAFLIVGFAVGWLAGSAALVVLGIGFFFL---- 131
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ QK ++ + + P LD + V G S+ A + A PL M +
Sbjct: 132 LYTRAQKYRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKD---PLQSVMEKAAS 188
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A + +T++D + L S RYG + L + + R E
Sbjct: 189 LARAGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDREQAEQ 248
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+ A + +L+ ++ LPV + +I
Sbjct: 249 DLSAMTAETRLSA-WVLSLLPVAVCCLI 275
>gi|161524902|ref|YP_001579914.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189350348|ref|YP_001945976.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342331|gb|ABX15417.1| type II secretion system protein [Burkholderia multivorans ATCC
17616]
gi|189334370|dbj|BAG43440.1| Flp pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 330
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 90/314 (28%), Gaps = 24/314 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ + + + ++ + + K R + T + ASS RT
Sbjct: 5 MIWVLVVAMLCAASALMLWRHAETRRVRTDAKRFIDSRLEPGARMATPAARPVASSGART 64
Query: 75 RDSKSLRNFVKKLNLKAILVDEN---IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
R V + L + N + AG +++ +V
Sbjct: 65 APPSGDRWNVASKEFRTHLYAVAWEYLDNLVSRAGIEGARGKSVVALV------------ 112
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
V A G VW+++ +Q+R+ I R P LD ++
Sbjct: 113 ----ALIAIAAIAGAHGGVLACFAALACGSAIFGVWLASRIQRRRLKIVRQIPSFLDGIV 168
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
V G S+ A + + PL + L A + +
Sbjct: 169 RLVTLGNSVPAAFQ---SALQTTEEPLRGCLDHVSRMLRTGVEIDRAMLHIAKIYRTKEF 225
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV--PMIIFFLPV 309
L S +YG L + R E E A S +L+ M++
Sbjct: 226 ELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSAETRLSAFVLMMLPIAIG 285
Query: 310 LILVIIGPAILSII 323
+V+ P L +
Sbjct: 286 SFVVMTNPKYLQGM 299
>gi|298675313|ref|YP_003727063.1| type II secretion system F domain-containing protein
[Methanohalobium evestigatum Z-7303]
gi|298288301|gb|ADI74267.1| Type II secretion system F domain protein [Methanohalobium
evestigatum Z-7303]
Length = 652
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/333 (13%), Positives = 110/333 (33%), Gaps = 28/333 (8%)
Query: 11 ATELAVAITTAVSIF--SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
A + I + + + I + + + + + ++ +Q++
Sbjct: 261 APLFLMTILVVLGLLNPTSILIMYLLIYIAVPFGTMVFLILLDTITSDQQKLPETYVTEK 320
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + ++L K K S L+ R +
Sbjct: 321 SLNVFDDLHVKFSKLDEELIKKIEFQKRITKIK------DSLKHPIHLMRGRPSYAFVLS 374
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAV----------------ILIGYVGFCAPSVWISNLV 172
I ++ F + + Y F + V I + P + L
Sbjct: 375 IPVALFYFLNNIIGRYQFDFNIKLVELSTFNIDFATYIDDYIFYSVLIMIVPFIVFHELR 434
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
KR S I+ P+ L E+GI + A+ A+ + + E+ ++++
Sbjct: 435 AKRISQIEEQIPEFFKKLASINEAGIMLMDAISMTAQ---SKVGIIHTEIGKMKEDINWG 491
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N A + F R + D R +I++ + L + ++ ++ M+ + ++
Sbjct: 492 TNLTQALKKFEYRVRTDLTRRIVTTIIKASESTNDVTSVLNIAANDAEVQKQMKNQ-RST 550
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + FF+ + I+ I+ LS + +
Sbjct: 551 EMYVYVFIIYMAFFVYLFIVYILTVHFLSSMPS 583
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 77/260 (29%), Gaps = 30/260 (11%)
Query: 97 NIVNKLRAAGFRSE--YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL------ 148
+I ++LR A +++ L+ ++ +G F
Sbjct: 27 DIKHQLRKAVIPVPVVQYVSLAYFYSLITGLVIGSIGFYASLVVFSDTGALFVFKDLLPN 86
Query: 149 --------------RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ ++ Y + S R++SI ++ L
Sbjct: 87 WIEAYALELMACVQGILIFLIGFYTTYFVYLSIPSLKANIRKTSIDQSLIHVTTYLYAMT 146
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRN 253
G + + + +EE + ++ F + A +N RT R
Sbjct: 147 RGGGLSLFDIFKSLSNHKHIYGTAAEEFGYIVRDMEFFGHDIITALQNAKLRTPSQNFRE 206
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
LI G I L+ + RS E + +LG + +F + L L+
Sbjct: 207 LIDGLISILSSGGDITAYLKNKTEQYRSVAKTEQQTFLETLGILAESYVSVFVVAPLFLM 266
Query: 314 -------IIGPAILSIIDTM 326
++ P + I+ +
Sbjct: 267 TILVVLGLLNPTSILIMYLL 286
>gi|209809174|ref|YP_002264712.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
gi|208010736|emb|CAQ81127.1| bacterial type II secretion system protein F [Aliivibrio
salmonicida LFI1238]
Length = 303
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 4/148 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I L ++ ++ + ++PDAL++L V SG I A+ V + G+ + +E
Sbjct: 116 ILWLGKREKNRFEDSFPDALNMLSSAVSSGEGIMHAIIFVGASLDGK---VGKEFKRMGE 172
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+L + F R + L S G + + +R L R +E
Sbjct: 173 QLQLGESPDTVFRKSCARFPYPSFQFFIITLRTSMERGGQLKEIMRRLNRLMFGARSIEK 232
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+K A + + + ++ P + L ++
Sbjct: 233 KKYALTSEARTSAKIVASI-PFIFLFML 259
>gi|227871817|ref|ZP_03990219.1| type II secretion system protein [Oribacterium sinus F0268]
gi|227842318|gb|EEJ52546.1| type II secretion system protein [Oribacterium sinus F0268]
Length = 224
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 76/195 (38%), Gaps = 7/195 (3%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L Y F + +L+ F P + L +KRQ + + + L +L + +
Sbjct: 1 MLLLLFSYAFYQHILFFLLLLPFSFFYPFLQRDKLRKKRQEVLVSQFKEMLSILSAYLSA 60
Query: 197 GISIDQALRRVA---EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
G S++ AL E++ G+ + EE+ LS + A F R+ +D + N
Sbjct: 61 GYSLENALFACIPDLENLLGKKCYMVEELKQIKRSLSMNRPLEEALSQFALRSGVDDIHN 120
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++ + + R G + ++ + R + + E + + I+ +P ++
Sbjct: 121 FSEIFLVAKRSGGDLIQIIQQSSTIIRDKLTITEEIITLNAS-RRFEQKIMNGVPFFMIF 179
Query: 314 IIG---PAILSIIDT 325
+ P I+ +
Sbjct: 180 YLNASSPEFFRILYS 194
>gi|238793626|ref|ZP_04637249.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
gi|238727041|gb|EEQ18572.1| Type II secretion system protein [Yersinia intermedia ATCC 29909]
Length = 194
Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + + P I N++ K+ + + P +D+ CV+SG++ID AL A
Sbjct: 32 LLMIGLFMLITTIYLPKFIIRNILNKKIKCLLNSLPFFIDITAACVQSGMTIDSALSYTA 91
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ + LS + + A + F + ++ AL S +G+++
Sbjct: 92 KKFILINPDLSLIVTKITKRAEIN-GLESAIKEFQQLSTETEIKMFCSALQYSISFGSTV 150
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
D L L + R +L+ E+K + L KLT
Sbjct: 151 YDQLIKLAQDMREMQLLVTEEKNSKLSTKLT 181
>gi|154505644|ref|ZP_02042382.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
gi|153794083|gb|EDN76503.1| hypothetical protein RUMGNA_03183 [Ruminococcus gnavus ATCC 29149]
Length = 232
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 72/204 (35%), Gaps = 4/204 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + Y F A IL+ + W ++++ + + +++
Sbjct: 1 MAAAGRGILITGMTAYLFYDHWTAWILMVPIALLYVKNWEEECCKQKKEEFREQFRESIQ 60
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L ++ G S++ A+R ++I + +E + +L + + F +R
Sbjct: 61 TLSAILKVGYSVENAIRETWKEICPIYKKKTRIIKEYETMVHQLDLNMTAEEVMKQFADR 120
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + V N + R G +R + +E E + KL I+
Sbjct: 121 VKEEDVENFVTVFGAAKRLGGDSIAIIRHAADAIGEKMEVEREIQVMLTSKKLEFK-IMC 179
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+P +I++ + A + + +
Sbjct: 180 VIPFVIILYMRSAFPEFMAVLYGN 203
>gi|152981651|ref|YP_001355003.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
gi|151281728|gb|ABR90138.1| Flp pilus assembly protein TadB [Janthinobacterium sp. Marseille]
Length = 311
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 98/304 (32%), Gaps = 35/304 (11%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREI-LRKQQITSLQKDSASSRL 72
++ V++ L+ A I + +L ++ + + + +R + L + +
Sbjct: 1 MSALTLWMVAVAILLLAGGIVLWQNAQLHQQQDATSAFVDQQIRSIEQPQLTSNGELEQP 60
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ +S N K L AG + I + LV I+ +L
Sbjct: 61 TMQKPRSEANRWGKFCL--------------RAGI---VTTPIFYMTLLVPGIVLTLLAA 103
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ I ++ + +R + R P LD ++
Sbjct: 104 VFGGVLS-------------AIGTIFLYGTLSYFRLWLKATRRHQKMVRQLPAFLDTMVR 150
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
G S++ A + + PL E + + + + + A ++ +
Sbjct: 151 LTIVGNSLESAFQAT---VLTTEEPLRELLDRSNRLVQAGMDLEHALVQKARVFRLQELE 207
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + R+G L + + R + E A S +L+ I+ LP+ +
Sbjct: 208 LIAAVIGVALRFGGRADTVLERMAAFMRDREYSQNELVALSSETRLSA-WILGLLPIGLG 266
Query: 313 VIIG 316
V +
Sbjct: 267 VFMV 270
>gi|303233432|ref|ZP_07320101.1| type II secretion system F domain protein [Atopobium vaginae
PB189-T1-4]
gi|302480561|gb|EFL43652.1| type II secretion system F domain protein [Atopobium vaginae
PB189-T1-4]
Length = 229
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+QKR+ + P LD++++ + +G+S D +L G L++
Sbjct: 69 FIRHFVERTELQKRRMVCLQQLPVLLDVVILGLSAGLSFDASLDLYCSHYQGA---LADA 125
Query: 222 MLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + +++ A ++D + +++Q+ G+ + L R
Sbjct: 126 FSAVMLQERLGIVSKREALLKLDQDMKLDALSRFISSVVQALECGSPLVHILAGQAEAIR 185
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ E E++ + K+ +PM +P +++ I+GP I S
Sbjct: 186 DAQRSELEEQIEKVPVKMLIPMGTLIVPAMLISIVGPLIAS 226
>gi|258652939|ref|YP_003202095.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233]
gi|258556164|gb|ACV79106.1| hypothetical protein Namu_2760 [Nakamurella multipartita DSM 44233]
Length = 305
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/314 (15%), Positives = 104/314 (33%), Gaps = 11/314 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ A+ + + ++ +++ R V + + +++ + A RL
Sbjct: 1 MITAMLVGAVMGASLFVLLLRLAAP-----RTAPVVELALLDARHAVSADVEPVAFDRLA 55
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ L++ + LR + SL ++L +L++ + +LG+
Sbjct: 56 GGWDSLAGRVGEWFALRSDRLGVGYAA-LRQDLAITAGSLPVVLGRKLILAVAGPVLGVG 114
Query: 134 WIFGYDKLLEY--PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ P V A I +GF P + I R+ + A LDL
Sbjct: 115 LTVVASGWAGFHIPAGSMVAAAIACAAIGFFIPDLRIRREAHGRRVEFRHALGAYLDLTS 174
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ + + +AL A G S P + VA + +R + +
Sbjct: 175 LEMAGSAAPAEALPTAARV--GASWPFLLIRDTLYRAARGGRSPWVALSDLGSRIGVPEL 232
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R+ + G + +L R L + + A + + I+ I
Sbjct: 233 RDLGGMIELVAHDGARVRSTLAARAQTMRRRELADLQGNAGKADQSMRLAQILVAF-GFI 291
Query: 312 LVIIGPAILSIIDT 325
+ I PA I+++
Sbjct: 292 IFIGYPAFAVILNS 305
>gi|218676253|ref|YP_002395072.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
gi|218324521|emb|CAV25998.1| putative Flp pilus assembly protein TadB [Vibrio splendidus LGP32]
Length = 304
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 96/254 (37%), Gaps = 12/254 (4%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
++ S L +++ + + + +E+ +LR + + ++ +
Sbjct: 20 RSRQSKKLSSLIEMEAEFEGVKGVRSVIDSQQFEESYKARLRKS---YKKTIKVFQPNMS 76
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ I+F + ++ ++ F LR + + V+ S L Q++ +S K
Sbjct: 77 LKLILFASVTASVVYAVNE-----FFLRQDYFVCLLLAEPILFFVFYSKLKQRQMNSFKT 131
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+PDAL++L + SG SI A V + + + +E L L + E
Sbjct: 132 NFPDALNILSGAISSGQSIIHAFEYVGKQLDN---DVGKEFKLMAERLLIGEDPDDVLER 188
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
N + + G + D + + R +E +K A + + +
Sbjct: 189 SSNTFPYLEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALTSEARASAK 248
Query: 302 MIIFFLPVLILVII 315
+I LPV+ L+I+
Sbjct: 249 IIAC-LPVIFLIIL 261
>gi|255514158|gb|EET90420.1| type II secretion system protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 365
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 42/268 (15%), Positives = 92/268 (34%), Gaps = 20/268 (7%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ + N+V+KL LK ++E + + + + + ++
Sbjct: 75 ASPQGKRPSQRKKPGKFENYVEKLALKQKGLEEALRAQ------DIKETPKQFVKRMVMT 128
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA----PSVWISNLVQKRQSSI 179
++ ++ + + L L V IG+V + + K +
Sbjct: 129 SMLLAVVIGLTLIILFIHLNLSPALGVVMGGGIGFVMYMMLLNNFLRFPIQKSNKGAKKV 188
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+R A ++I + SG+ + A+ I S+E + + + A
Sbjct: 189 ERDILFAARDMIISLRSGMPLFNAIV----SISTGYADASKEFAKIVERVQLGMPLEEAI 244
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ T+ D R S + G I +L+ ++ + ER +E + L
Sbjct: 245 DQTIADTKSDSFRRIMLQASVSIKAGADIVSALQTVIDQLSQERYIELRRYGQRLNAIAM 304
Query: 300 VPMIIF-FLPVLILVIIGPAILSIIDTM 326
M+ LP +G A+++I+ T
Sbjct: 305 FYMLFGVILPS-----MGIAVVTILTTF 327
>gi|13471028|ref|NP_102597.1| integral membrane protein [Mesorhizobium loti MAFF303099]
gi|14021772|dbj|BAB48383.1| probable integral membrane protein [Mesorhizobium loti MAFF303099]
Length = 301
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 101/255 (39%), Gaps = 10/255 (3%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ S RT ++ ++ K++ + +L+ L AG S +S + +R +I
Sbjct: 11 AGRSDKRTAINRRMKLQESKISQEQVLIQLRKERGLD-AG-TSLFSPDRFRALRTQSGMI 68
Query: 127 -----FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
FL++ + + + ++L + P + + + ++R
Sbjct: 69 MPLSKFLMITSGVAMAMTLVAIWHGLPLLMGLLLFVVLMPLVPVMVMRSKRKRRLKRFGM 128
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+AL+L+ +++G + A+ V+ ++ P+ E + E+++ + A +
Sbjct: 129 QLPEALELITRGLKAGHPVPVAIAMVSREMPD---PIGTEFGVIADEVTYGSDLVSALNS 185
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++R + + A+ G ++ + L L R + + +A S +++
Sbjct: 186 LFDRVGHEDLPLFITAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRMSAY 245
Query: 302 MIIFFLPVLILVIIG 316
++ +L I+
Sbjct: 246 ILTAIPALLFAAIMA 260
>gi|322369440|ref|ZP_08044005.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
gi|320551172|gb|EFW92821.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
Length = 699
Score = 76.0 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/310 (12%), Positives = 107/310 (34%), Gaps = 17/310 (5%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
D D L + + + + + + + ++ +R+ +
Sbjct: 317 DTLDFLYLMAYLLIPLGNVGFVVYLDSITESLRISRESRTTPSITVPTVRRVADPDAGRT 376
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ + + L + + +++ L D ++ L V +
Sbjct: 377 VSDGGTTPTNVERLAAYDRFKDVRDGLEDP-------------FRTVRRNPDTLLYVTVP 423
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+L ++ D V V++ + + ++R +I+ A PD
Sbjct: 424 LALLSVVLRVFPDLAAGTATPASVDGVVIQAALFVLGTYAVVQWAYRRRVKAIEAAVPDM 483
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD L E+G+++ +++RRV L++E+ ++ + + A +R
Sbjct: 484 LDRLASLNEAGMTVVESVRRVTN---SDLGALNDELERMSRDIEWGTDAATALRRVEDRI 540
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V + + IG LR+ + + R ++ +++ + L + + FF
Sbjct: 541 DTPTVTRVVSLVTNAMHASGDIGRVLRIAADDAQESRRLQRQRE-DEMKTYLIIIYLSFF 599
Query: 307 LPVLILVIIG 316
+ ++I+ +
Sbjct: 600 VFLVIIGALS 609
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 2/217 (0%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
S L L ++ +L +L G + + S
Sbjct: 103 SPATLRAELPARLQFLANLVVVPSLTLGELFVLLVFSSATVGLLGGALTYWLRWELPSYR 162
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
R I + + SG+ + +R +A + +E + A F
Sbjct: 163 GNARARKIDGSLSRTVAFTYALSRSGMGMPAIMRTLARNRDVYGEAAAEVGVGVKAMDLF 222
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A + ++ + + + L + G S+ L + + E E
Sbjct: 223 GLDVLTAIKQMSRQSPSEKFEDFGENLASVLQSGQSLPTYLSEQYERYQRDAKAEQEAFL 282
Query: 292 ASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTM 326
L + +F + L+L +++ ++ + DT+
Sbjct: 283 ELLSVLAEGYVSLFVVGPLLLITILVIMGLMGVADTL 319
>gi|237733161|ref|ZP_04563642.1| predicted protein [Mollicutes bacterium D7]
gi|229383705|gb|EEO33796.1| predicted protein [Coprobacillus sp. D7]
Length = 283
Score = 76.0 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 71/210 (33%), Gaps = 14/210 (6%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
S+ + L+ IL +I++ ++ IG + P +
Sbjct: 84 SIYKYRKIVLICTFAAFILVLIFVGFIPS----------ILILAIGGLCSYVPDFRLKQD 133
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ + PD + + + + +G+++ QA+ + G + +E + +A+
Sbjct: 134 LSMKYQIFDNTLPDYISRVSLAMNAGMNLSQAMIIATRALDG---DIKKEFVRFLADTER 190
Query: 232 LPN-RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + N R +I + G + + L + E L++ E++
Sbjct: 191 NQDDIAKPYINLRQRFPTKSCERFCSVVITGIKNGNKMSEILEKETNYINDETLIKMEEQ 250
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
T F + ++I P ++
Sbjct: 251 GKKNEIVSTAISTGFIFIPITALLIAPIMM 280
>gi|297202076|ref|ZP_06919473.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|297148029|gb|EDY58318.2| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 314
Score = 75.6 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 3/175 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ L L L G G A +++ QKR P+
Sbjct: 89 FFAAMIGLVGGLWLIGQAALAPFFGPLAGLAGVWAAVQFLNWQRQKRIEKFINQLPELAR 148
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +G+++ A+ AE++ P EE+ +L+ + A + R
Sbjct: 149 ILANATHAGLALRTAIGMAAEELE---APAGEELANVANQLAVGVPMEDALDEMAKRLPS 205
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ S+R G + +LR L + E + +T +
Sbjct: 206 RELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVNMTSYAV 260
>gi|91775992|ref|YP_545748.1| type II secretion system protein [Methylobacillus flagellatus KT]
gi|91709979|gb|ABE49907.1| type II secretion system protein [Methylobacillus flagellatus KT]
Length = 303
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 12/259 (4%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S +L+ + + + L+ + A R I +
Sbjct: 24 SRQKQLQAKARVNFEQALPYFGQIENLLPARDKSWASRAKLRFS---VIYGFELAAWHTV 80
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
G++ +F + +Q + V+L P + +Q+RQ I P
Sbjct: 81 AFGAGLLLLFAFANSYMEAWQAGLCIVVLTAIFLVVIPYI----RLQRRQRIIVTQIPLF 136
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D + + +G S++ A+R V ED+ +PL + + A +
Sbjct: 137 IDQVSRALSTGKSVEGAVRSVTEDMQ---MPLRAVLDRVVRATDLGAGFADAMQKAAELH 193
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF- 305
+ + A+ S YG+S + L+ +V R + + E A + K+T ++
Sbjct: 194 HIKELGLIALAIRISSNYGSSPQEMLKSIVQMIRQQEQAQRELAAMTGETKMTAWVLSLT 253
Query: 306 -FLPVLILVIIGPAILSII 323
L V + I P + ++
Sbjct: 254 PLLIVGYMFIANPGYIDMM 272
>gi|325663220|ref|ZP_08151670.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470674|gb|EGC73904.1| hypothetical protein HMPREF0490_02411 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 251
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 7/199 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ Y F ++ +W ++K+Q + +L +
Sbjct: 22 AAFKGLALLSGIAYLFYDFFLGGLMFSPFLVIYLRIWEKQYIKKQQQEFCAQFKMSLQSM 81
Query: 191 LICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ G S + AL+ A+D+ + E I +L+ + ++ F +R
Sbjct: 82 SSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYMIHQLNMNVPLEQIWKEFADRVG 141
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V N + + R G + +R V + + ++ E + ++ K ++ +
Sbjct: 142 QEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEVKREIE-MTMSAKKLEFQVMSVV 200
Query: 308 PVLILVII---GPAILSII 323
P I+ + P + ++
Sbjct: 201 PFGIIFYMRIAFPDFVEVL 219
>gi|302553854|ref|ZP_07306196.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302471472|gb|EFL34565.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 314
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 69/231 (29%), Gaps = 5/231 (2%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R L + I +LR + L L +
Sbjct: 35 RQVLVDRLSATGQLPAGGRRRNFRGIDRRLRRTRLGKKLELR--LAATGLDITPGEFFVY 92
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L L L G +G +++ QKR P+ +L
Sbjct: 93 MLATVAGLWLIGQAALAPFFGPLAGLLGIGIAVQFLNWQRQKRIEKFINQLPEMARILAN 152
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++G+++ A+ AE++ P EE+ +L+ + A +R +
Sbjct: 153 ATQAGLALRTAIGMAAEEME---APAGEELGKVSDQLAVGASMDDALGELADRLPSRELV 209
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
L+ S+R G + +LR L + E + +T +
Sbjct: 210 VLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVTMTSYAV 260
>gi|254483273|ref|ZP_05096505.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
gi|214036496|gb|EEB77171.1| Bacterial type II secretion system protein F domain [marine gamma
proteobacterium HTCC2148]
Length = 283
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 78/189 (41%), Gaps = 4/189 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + F + I +G V + P V + N++++R+ ++ D +
Sbjct: 57 FLILKYGGTLAAFFIGLWFMNSLVFGIFLGIVIYLLPEVLLDNILRRRRERLEAQTADVM 116
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L ++SG++I+QA + +++ P+SEE L + A ++ R Q
Sbjct: 117 TALSASIKSGMTIEQAFSEMVDNM---YPPISEEFALIRERIDAGQPVIAAVKSADERLQ 173
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + Q + S G + + L TR +E + + G +L+ I+F +
Sbjct: 174 VPRLSLIFQTICISLERGGRLASLMDRLAESTREIERVEERVRTETAGLRLSAR-IMFLM 232
Query: 308 PVLILVIIG 316
P I ++
Sbjct: 233 PFFICGLLY 241
>gi|126179944|ref|YP_001047909.1| type II secretion system protein [Methanoculleus marisnigri JR1]
gi|125862738|gb|ABN57927.1| type II secretion system protein [Methanoculleus marisnigri JR1]
Length = 349
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/262 (13%), Positives = 85/262 (32%), Gaps = 7/262 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
R + +D+ + + + ++ L+
Sbjct: 13 RRPSDQERIPEDTPDADRFVEQDQEIFGRIENWQKYQEGFY----RFLKHPFRVMMEEPY 68
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+L V + V ++ I G + + + + V + + P +
Sbjct: 69 TVLFVSVPVALLLFIGGFVSMVTSYGIGALFTTTMIDDVFVFALLIAIVPLGLLDFKEAW 128
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R SS++ + P+ + +SG+++ A+ V+E G+ L+ + E+S+
Sbjct: 129 RVSSVEASLPNFFRDVAGMNDSGMTLPHAIHIVSE---GEYGALTPHIRKLDTEMSWGVP 185
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A F + + + G + + LR + ++ E+K +
Sbjct: 186 FVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTERKNGMM 245
Query: 295 GPKLTVPMIIFFLPVLILVIIG 316
+ + M F +I V+ G
Sbjct: 246 IYMIIILMSFFVFLFVIGVLSG 267
>gi|284028546|ref|YP_003378477.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283807839|gb|ADB29678.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 189
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 6/179 (3%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
LL P + +L V+KR + I P A+DLL C+ +G
Sbjct: 4 LLLLPLPWNIAPTVLAYLAIPAVLGRLEPAAVRKRNARISADLPLAVDLLAACLRAGRPP 63
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A+ V + G PL+ + L + A+ +A +
Sbjct: 64 QAAIATVGHALDG---PLAGLLAEVERRLDLGADAIDAWSVLR---AEPTCATFARATQR 117
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ R G + +L ++ R R AE++ ++ + +P+ + FLP +L+ + P I
Sbjct: 118 ALRSGAPLAKTLESQSADLRQSRRWTAEQQTRAVETRSVLPLGLCFLPAFVLLGVVPTI 176
>gi|254506141|ref|ZP_05118285.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
gi|219550959|gb|EED27940.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus 16]
Length = 306
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 4/197 (2%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
++L + +L + +RV + + ++ L ++Q
Sbjct: 71 MQLGAFALLKVLAYCLVVALVSFYANNTFIRVNPLYALVIGQMVGIFSGLTILESRQQKE 130
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ A+PDAL++L V SG S+ ++ V + + G + EE L +
Sbjct: 131 FEMAFPDALNMLASAVSSGESLMHSIIFVGKSLEGS---VGEEFKRMGERLQMGESPDTV 187
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F NR + L + + G + D + L R +E +K A + +
Sbjct: 188 FRKSCNRFPYRSFQFFVITLRANMQRGGQLKDVITRLNRLMFDARAIEKKKYALTSEART 247
Query: 299 TVPMIIFFLPVLILVII 315
+ I+ +P L ++
Sbjct: 248 SAK-IVAAIPFFFLFML 263
>gi|41615060|ref|NP_963558.1| hypothetical protein NEQ267 [Nanoarchaeum equitans Kin4-M]
gi|40068784|gb|AAR39119.1| NEQ267 [Nanoarchaeum equitans Kin4-M]
Length = 346
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 5/212 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + + I+ IL + F + L + + + + V AP + ++
Sbjct: 1 MRQYQYIAIGLGILLSILVLYLGFLFLGNLLFKDVSYILLIATLSIVLGLAPYMVYQYMI 60
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ Q +++ +P L L V SGIS+ AL+ A L++ + + LS+
Sbjct: 61 AREQKALESVYPSFLRDLAESVSSGISLIYALKLTAN---ADYGALNKYLRKLVIWLSWG 117
Query: 233 PNRQVAFENFYNR-TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A E F +R A + L++ + G I +LR+L M + +
Sbjct: 118 IPFPKAMERFNKYFYFSPAIRRANEILLEIYKSGGDIVKTLRLLAENIEKTSEMYKDIIS 177
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
K+ V +IF + V I VII P ++
Sbjct: 178 QVKS-KVFVIYMIFLILVAIAVIIKPIFAEVL 208
>gi|291521739|emb|CBK80032.1| Flp pilus assembly protein TadB [Coprococcus catus GD/7]
Length = 240
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 4/185 (2%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L+ + V +L + + R+ + + DA +L
Sbjct: 15 GVLLGCLIGWLCYRSVVTSLLGIMIVPFYIKYKRRMREKSRKQMLWHEFKDAAAMLYSST 74
Query: 195 ESGISIDQALRRVAEDIGGQ---SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G ++++ALR D+ L E L + + E+F R++ + +
Sbjct: 75 AAGGTLEKALRDTCCDMKTSDSSYQVLLPEFERICMHLDQNRSLESVLEDFAVRSEDEDI 134
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ L + + G S+ +R + +E + L K I+ +P I
Sbjct: 135 AYFVRVLTVARKSGGSLSSIIRHTADTMNLRMEINSEIET-ILAGKRGEWRIMLIVPPGI 193
Query: 312 LVIIG 316
L +
Sbjct: 194 LCYMN 198
>gi|260463898|ref|ZP_05812094.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
gi|259030273|gb|EEW31553.1| type II secretion system protein [Mesorhizobium opportunistum
WSM2075]
Length = 321
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 99/255 (38%), Gaps = 10/255 (3%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ S RT ++ ++ K++ + +L+ L AG S S + +R +I
Sbjct: 31 AGRSDKRTAINRRMKLQENKISQEQVLIQLRKERGLD-AG-TSLLSPDRFRALRTQSGMI 88
Query: 127 FLILGIIWI-----FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ + I + + + ++L + P + + + ++R
Sbjct: 89 MPLSKFLMITSAVAMAMALVAIWHGLPLLMGLVLFVVLVPLVPVMVMRFMRKRRLKRFGM 148
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P+AL+L+ +++G + A+ V+ ++ P+ E + E+++ + A +
Sbjct: 149 QLPEALELITRGLKAGHPVPVAIAMVSREMPD---PIGTEFGVIADEVTYGSDLVSALNS 205
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
++R + + A+ G ++ + L L R + + +A S +L+
Sbjct: 206 LFDRVGHEDLPLFMTAVSIQSSSGGNLREILDGLALTIRERGKLRRKVRAISTEGRLSAY 265
Query: 302 MIIFFLPVLILVIIG 316
++ +L I+
Sbjct: 266 ILTAIPALLFAGIMA 280
>gi|254393102|ref|ZP_05008262.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294814749|ref|ZP_06773392.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326443128|ref|ZP_08217862.1| hypothetical protein SclaA2_18783 [Streptomyces clavuligerus ATCC
27064]
gi|197706749|gb|EDY52561.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294327348|gb|EFG08991.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 313
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 7/259 (2%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+ ++ ++ + + +LR R + + +
Sbjct: 28 AGRAQRDALVARMAQTGEPPARTGRRRRFHALDRRLRTT--RYGREVEHRIAATGLDLTC 85
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ + L +L V ++ KR + P+
Sbjct: 86 GEYTVAVLVLLLVTHLAVGAVFAPFFGVLAALVALWGARNFLEWQRVKRTEAFIAQLPEL 145
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+L ++G+S+ AL AE++ P E+ + +L+ + A R
Sbjct: 146 TRVLANATQAGLSLRTALAMAAEELDD---PAGHELGIVADQLAVGQSLDDALGTLAERL 202
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--I 304
+ LI ++R G + SLR L + E K+T + +
Sbjct: 203 PSRELIVLVTTLILANRAGGQVVTSLRNLTQSLEERKETRREVTTTLSQIKVTALAVPLL 262
Query: 305 FFLPVLILVIIGPAILSII 323
+L++ + P L +
Sbjct: 263 GLGFLLMINGMTPGALDRM 281
>gi|328943879|ref|ZP_08241344.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
gi|327491848|gb|EGF23622.1| hypothetical protein HMPREF0091_10569 [Atopobium vaginae DSM 15829]
Length = 153
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ + + P LD++ + + SG+S + +L + L++ + +
Sbjct: 4 RKRNRMMCLQELPTLLDVITLGLSSGLSFEASLDLYCMHY---NGVLAQLFQRQLLQYRL 60
Query: 232 LP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+R+ A ++ + +D + T +IQ+ G+ + L R + E E++
Sbjct: 61 GVISRRAALQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEE 120
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGP 317
+ K+ +PM + +P +++ I+GP
Sbjct: 121 IEKIPVKMLIPMGVLIVPAMLISIMGP 147
>gi|84489955|ref|YP_448187.1| type II secretion protein F [Methanosphaera stadtmanae DSM 3091]
gi|84373274|gb|ABC57544.1| predicted type II secretion protein F [Methanosphaera stadtmanae
DSM 3091]
Length = 277
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/192 (18%), Positives = 81/192 (42%), Gaps = 4/192 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI-SNLVQKRQSSIKRAWPDALDLLL 191
I ++ F + + + + + + +K++ I + P L L
Sbjct: 54 IIFLICIGVILCIFNITYAIEVFMITLLYILFKRNLPKYKKEKKRKDILKVIPYVLRELS 113
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
I +++GI + A+ V+ G LS+E +T+ E+ + N AFEN R + +
Sbjct: 114 IELKAGIGLFDAIEEVSN---GNYGQLSKEFKITLNEIKYGTNYIEAFENLSKRINLPIM 170
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ ++ G ++ D+L +L +E ++ ++ + L + + M + +I
Sbjct: 171 EKIVSHMNRTIINGGNLADTLNILANENSRNMQIKYKEYSEKLNSLMILYMFTTVVIPVI 230
Query: 312 LVIIGPAILSII 323
L I+ A ++I
Sbjct: 231 LFIMIIAATTVI 242
>gi|288930650|ref|YP_003434710.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288892898|gb|ADC64435.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 633
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/259 (18%), Positives = 107/259 (41%), Gaps = 10/259 (3%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+L + +K+ + + I K+ + FR EY I L+ + I+ +
Sbjct: 307 KLISPMESGAPPLIKERHRVNRNILPEIEKKVNSWKFRREYLNPIRLLKKYPEAILLFSV 366
Query: 131 GIIWIFGYDKLLEYPFQLRVGAV------ILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IF L PF + + + + +P + +++ ++ + P
Sbjct: 367 PAGMIFVVLGFLNNPFYPSIDWFFKFDDYLFVALIIMLSPYAVFYEIKKRQLNTALKLTP 426
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L+ L ESG+ I +A+ +A+ ++ L +E+ +L + + + A F N
Sbjct: 427 VFLNKLASANESGMPIHKAIAMIAK---TETSALKKEIEKIKLDLDWKISLEDALIRFAN 483
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R ++ + L+++ R ++ + LR+ + + L+ E+ + + + I
Sbjct: 484 RIRVFELTRTITLLVEALRSTGNVTEVLRISAKDASNAELLRRERLGN-MFMYVIIIYIS 542
Query: 305 FFLPVLILVIIGPAILSII 323
FF+ + I+ II LS++
Sbjct: 543 FFVFIGIVYIISTTFLSVL 561
>gi|313822020|gb|EFS59734.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA1]
gi|314926542|gb|EFS90373.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA3]
Length = 249
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 82/194 (42%), Gaps = 6/194 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 57 LAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEALL 116
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 117 MLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLA---SV 170
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R+ Q + ++ G I + L ++ + + EKKA G P++ LP
Sbjct: 171 EVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLP 230
Query: 309 VLILVIIGPAILSI 322
LV + P I +
Sbjct: 231 AFSLVGVVPIIAGM 244
>gi|186473166|ref|YP_001860508.1| type II secretion system protein [Burkholderia phymatum STM815]
gi|184195498|gb|ACC73462.1| type II secretion system protein [Burkholderia phymatum STM815]
Length = 275
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 79/199 (39%), Gaps = 5/199 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +L V + + + P +S + +R +++R PD L
Sbjct: 50 AAVTLIAMVALPVLSLLLSGSVLVALASLPLVWFVPRRVLSWMRTRRIETLERQLPDMLL 109
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + +G S AL + P+S+E L + E+ + VA N R +
Sbjct: 110 MIAGGLRAGASFPIALESAVQ---ESVPPISQEFDLLLREIRLGIDLDVAMRNIEQRIPV 166
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
T A++ S G ++ +L + S R + ME + +A + ++ ++
Sbjct: 167 PDFMMVTAAVMISREVGGNLAQALESVASTLRDKLQMEGKIRALTSQGRMQGIVMTCLPL 226
Query: 309 VLILVI--IGPAILSIIDT 325
L++V+ + P ++ + T
Sbjct: 227 FLMMVLRAMEPVAMAPLFT 245
>gi|310640813|ref|YP_003945571.1| flp pilus assembly protein tadb-like protein [Paenibacillus
polymyxa SC2]
gi|309245763|gb|ADO55330.1| Flp pilus assembly protein TadB-like protein [Paenibacillus
polymyxa SC2]
Length = 263
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 5/188 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + Y F + +L P + L+Q+R+S++ + AL L
Sbjct: 36 LSSGVLFATIGYLFYHQWILSLLCAAGAVVMPRYFRKFLLQRRRSALSIQFKQALYSLSS 95
Query: 193 CVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +G S++ R ED+ S L E + A L + A ++ R Q+
Sbjct: 96 SLSAGRSVENGFREAVEDLRLLSPDGDHDLIFEFNIITACLEIGQPVEAALQDLARRAQI 155
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + N R G + + +R S + ++ E K ++F P
Sbjct: 156 EDITNFADVFAACKRTGGDLVEVVRRASSVIGEKLEIQQEIGVMIAQ-KRFESRVMFAAP 214
Query: 309 VLILVIIG 316
L ++ +
Sbjct: 215 FLFVLFMT 222
>gi|218847958|ref|YP_002454864.1| conserved membrane protein, putative [Bacillus cereus G9842]
gi|218546089|gb|ACK98482.1| conserved membrane protein, putative [Bacillus cereus G9842]
Length = 327
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 27/308 (8%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
V IF LI + +KR K A I + Q ++K S + L
Sbjct: 13 GVCIFILIATFFLK-------DKRKKYTAENILIDLENQKAQMEKRSKEEQNIDIPYTFL 65
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+F + + N+ + + I I
Sbjct: 66 DSFFNNFSFTEKIAPSNV--------IAEARRYEWFIGAKEYWTI------YIVGSTLLT 111
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ ++ +GF + +K + + + + ++
Sbjct: 112 GSIFLMLNGHIGCVIGYALGFYIHRFMLHVHRRKYKFVENDRISIYMKTMTNSLHILGTV 171
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A+ V + + EE+ +L + A + + + + L
Sbjct: 172 IDAIEEVKPLVHSS---IREELDKATFKLKQGKSVAEALSSLDKKYPYKELMFFHEMLDV 228
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV---PMIIFFLPVLILVIIGP 317
+D+ G ++L + + ++ + + A + I+ LP + +
Sbjct: 229 ADKNGGKNTEALESIALDFEDRKVKQMQLYAETTQGMKAFRNTAAIVIALPFIFKFFMPQ 288
Query: 318 AILSIIDT 325
A ++ T
Sbjct: 289 AYSILMRT 296
>gi|331086802|ref|ZP_08335879.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409968|gb|EGG89403.1| hypothetical protein HMPREF0987_02182 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 251
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 7/199 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ Y F ++ +W ++K+Q + +L +
Sbjct: 22 AAFKGLALLSGIAYLFYDFFLGGLMFSPFLVIYLRIWEKQYIKKQQQEFCAQFKMSLQSM 81
Query: 191 LICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ G S + AL+ A+D+ + E I +L+ + ++ F +R
Sbjct: 82 SSALNVGYSAENALKETAKDLSLIYKKDTRIMREYTYMIHQLNMNVPLEQIWKEFADRVG 141
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ V N + + R G + +R V + + ++ E + ++ K ++ +
Sbjct: 142 QEDVSNFVSVFVAAKRAGGDSIEMIRNAVKQICEKIEVKREIE-MTMSAKKLEFQVMSVV 200
Query: 308 PVLILVII---GPAILSII 323
P I+ + P + ++
Sbjct: 201 PFGIIFYMRIAFPDFVEVL 219
>gi|258515695|ref|YP_003191917.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
gi|257779400|gb|ACV63294.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
Length = 306
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 7/194 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + ++ +G P ++ ++ KR + + L +
Sbjct: 84 VLCAAIAFGILKFLFTSTYVALIGIPIGLYVPINILNAMISKRGELLAKQLHGCLIIWAN 143
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ SG+S+ QA+ A IG + ++EE+ ++ + A E R + +
Sbjct: 144 SLRSGVSLAQAI---AGSIGRVAPQINEELKRIKYDIDLGFSSADALEKALVRIPVAEFK 200
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ G ++ + + KA + KL ++ +P ++L
Sbjct: 201 MVVMTAKIHRQLGGNLAERFDNICLTIEERIATRDVLKAHTTQAKL-GAVVAGLMPFIVL 259
Query: 313 VI---IGPAILSII 323
+I + P L +
Sbjct: 260 IILKTMSPDYLKPM 273
>gi|86740439|ref|YP_480839.1| type II secretion system protein [Frankia sp. CcI3]
gi|86567301|gb|ABD11110.1| type II secretion system protein [Frankia sp. CcI3]
Length = 301
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 15/312 (4%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + V ++A+V+ + + T + +
Sbjct: 4 LLMLLGVGAGVGLWALVVWLFPPRPSLDEVLARLNPTPAPPAAPTTVPAEQDGWAVR--- 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ L A L + L G S L + + L+ +
Sbjct: 61 ----MGRPFVGLLRAAGLPTVALRRDLATLG----RSPEAHLAEKATAAVAGLLFPSVVG 112
Query: 136 FGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ +P+ + V +L+G VGF P + + +++ + + A L L+ + +
Sbjct: 113 LAFAAGGRPFPWAVPVAVALLLGVVGFLLPDLTVKAEADRQRRAFRYALSAYLSLIQVLL 172
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G ++ AL A G L T E + VA Q+ +
Sbjct: 173 AGGAGVETALTDAANVGNGWPFAAIRRALRTARETRI--SPWVALGQLGAELQISELTEL 230
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G + SL + R + +AE A + ++++P ++ IL +
Sbjct: 231 ADAVALAGTEGARVRQSLDAKAAALRVRQAQDAEADANAATERMSIPGVL-IAIGFILFV 289
Query: 315 IGPAILSIIDTM 326
PA+ I ++
Sbjct: 290 FYPALTQITRSL 301
>gi|288559927|ref|YP_003423413.1| type II secretion system protein F GspF2 [Methanobrevibacter
ruminantium M1]
gi|288542637|gb|ADC46521.1| type II secretion system protein F GspF2 [Methanobrevibacter
ruminantium M1]
Length = 309
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 92/204 (45%), Gaps = 4/204 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
I + ++ I+F+ + I L + F + + A++L ++ + +++
Sbjct: 33 AGIFTLASQIIAILFISIVFTLILALMIALLFSFDI-LMAILLAIFIPLLSFILFVFIKS 91
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R+ ++ + PD L L + G+S++ AL ++E + PL +E+ + E+
Sbjct: 92 ERRREELENSIPDFLRQLASMLRVGMSLENALVDLSEH---GNGPLYDELRRVVVEIRMG 148
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ +F N R + + + ++ + + G + D + + + R+ +++ E+K++
Sbjct: 149 KSFDESFRNMAKRLDSKDLERSFKIILNAHKSGGGLADVISDVSDDLRAMLILKRERKSS 208
Query: 293 SLGPKLTVPMIIFFLPVLILVIIG 316
+ + + + L ++G
Sbjct: 209 VMMSIMFLVLASVVAAPFALGMVG 232
>gi|119714031|ref|YP_919173.1| integral membrane protein [Nocardioides sp. JS614]
gi|119525940|gb|ABL79310.1| integral membrane protein [Nocardioides sp. JS614]
Length = 302
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 10/303 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + I +AV+ L+ + + L + R ++ + + + R
Sbjct: 2 IPMLIISAVAGLGLLRLHRLAFPSAPPLADQAARWERARARAGRRARLDIAPEDQTWSKR 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
F ++L + + L G E L LL + I L +
Sbjct: 62 AA-----EWFAEQLRTRRPDDMQTYERDLAVTGQPMEEWLAKLL---VWFLIGLLGPVAL 113
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ G L P + ++ V + KR+ + A D LDL+++
Sbjct: 114 VLLGNAAGLGIPILVAPALGLVSAVVAVLGEVRQLRETAGKRREELCDALSDFLDLVVMS 173
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+E G S AL VA+ G A R + + +
Sbjct: 174 MEGGRSHADALPTVAQIGTGW--AFHTIYDAIDNARPNGMTPWEALGEVGERFGVVELLD 231
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+L + GTSI ++L R RL +A +A + +++ L V
Sbjct: 232 LRASLNLAQDEGTSIRNTLIARAQSMRDARLADAHARANKSTDAMRNNLMVMALVAAAYV 291
Query: 314 IIG 316
I+
Sbjct: 292 ILA 294
>gi|172062963|ref|YP_001810614.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171995480|gb|ACB66398.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 325
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 104/298 (34%), Gaps = 22/298 (7%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
A+ F +I + + L R + +R R +++ + T
Sbjct: 6 LFALGAFVVILVIGLML---SALLDRARQAPEQRIRERMRRLAPSLAGREAGAHATPGVA 62
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
++ ++A L + + + + I+ I I+ +
Sbjct: 63 LFNLPRRQGRVRAWLQRYVTRVR--------AVGGERGMRIVIASAIVGEIAAIVAMKLV 114
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ VG +L + LV++ + A+PDA+DL++ V +GI
Sbjct: 115 ALPSVLHPLIYVGLPLLAMRASY-------RALVERFRLRFLEAFPDAIDLIVRAVRAGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ QA+ V + P+ L + + +R + T L
Sbjct: 168 PVTQAISTVG---DSAAEPVRSTFRTMGDSLRVGVDLKDVLTQASDRLMIADFSFFTVYL 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G S+G++L L S R+ R + + +A + ++T II +P +++ +
Sbjct: 225 LLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRIT-TKIISAVPFVMIGALF 281
>gi|331003046|ref|ZP_08326558.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413090|gb|EGG92465.1| hypothetical protein HMPREF0491_01420 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 227
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/198 (13%), Positives = 75/198 (37%), Gaps = 7/198 (3%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L Y F V ++ F P+ L+ ++ + + +A+ ++
Sbjct: 1 MAVVTAALGSYIFYKSVIIFFVLLPFCFLYPNFKRKELINVKKRKLVLEFKEAIMIISSL 60
Query: 194 VESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ +G S++ +++ ++ + +E + + + AF++ R+ +
Sbjct: 61 LSAGYSLENSIKEALVELRLLYSKDNLIIKEFEYINQLIYMNISVERAFDDLAYRSHSED 120
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R+ + L + R G + + V+ + ++ E + K ++ P+
Sbjct: 121 IRSFAKVLRIAKRSGGELVSIISHTVNVIADKVRIKEEIITMTA-AKRFEQSVMNVFPLF 179
Query: 311 ILVII---GPAILSIIDT 325
I++ I P +I+ T
Sbjct: 180 IVLYIDISSPGFFNIMYT 197
>gi|153812903|ref|ZP_01965571.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
gi|149830981|gb|EDM86071.1| hypothetical protein RUMOBE_03310 [Ruminococcus obeum ATCC 29174]
Length = 275
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 7/230 (3%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K + + + + V + LG + F L
Sbjct: 10 KREKKSKRKQKYIPQKALFGNGEDYYIYRMSFVEKLTGGALGFLVGAFVCMTFFRNFLLS 69
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
IL+ G ++ +RQ + + D L+ L +G + A
Sbjct: 70 GIVGILLILPGIGKYREFLK---ARRQKGLLIQFRDMLESLTASYSTGKNTQGAFEDAYG 126
Query: 210 DIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
D+ + E+ + + + N + +NF R+ +D V + S RYG
Sbjct: 127 DLADIYGKKADIVHEIEMIVNGIYNGQNIEALLKNFAERSHLDDVESFATIFEVSSRYGG 186
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ ++ + ME E + K + I+ +P++I+V +
Sbjct: 187 NLKKAVGDTYRIINEKIEMEMEIRTLLTANKNEL-NIMMLMPLIIMVTLS 235
>gi|282863647|ref|ZP_06272705.1| type II secretion system protein [Streptomyces sp. ACTE]
gi|282561348|gb|EFB66892.1| type II secretion system protein [Streptomyces sp. ACTE]
Length = 272
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 85/252 (33%), Gaps = 16/252 (6%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R +++R +L L +G ++ + + + + ++G
Sbjct: 33 RQERAMRRRGARLTSTTGCGPLAGWRLLSWSGRGEPDAVRRGALSLVAWAVGWFLVGGPA 92
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
G + Y + ++ P DLL C+
Sbjct: 93 GCGAGCVAAYGVWRWQRSAGARRAATRAKAEAL----------AVTAQLPLVADLLAACL 142
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G A V E +GG P+ + ++ T AE+ A+ F +
Sbjct: 143 SAGAGPRDAAEAVGESLGG---PVGDRLVRTAAEIRLGGEPSEAWGRFGE---IPGAARL 196
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ L ++ G D + + E R+ER A +A G +T P+ + FLP + V
Sbjct: 197 ARCLERAGATGAPAADPVSRVADEMRAERASAAVARAQRAGVLITAPVGLCFLPAFLAVG 256
Query: 315 IGPAILSIIDTM 326
+ P ++ + +
Sbjct: 257 VAPVVIGLATGL 268
>gi|119963307|ref|YP_949041.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119950166|gb|ABM09077.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 305
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+L+ +++G I +AL +A+ S P+ + + +A L+ + + A+
Sbjct: 170 MLELVASMLDAGAGIGRALELIAK---CASPPIRQSLRPVVAALAIGADWETAWRTPTR- 225
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
Q V AL + G L + R E+ AEK+AA+LG KL VP+ +
Sbjct: 226 -QPPEVVRLKDALAFAALTGAPSASILYAQAARERREQFRAAEKRAAALGVKLVVPLGLC 284
Query: 306 FLPVLILVIIGPAILSIIDT 325
LP I + I P +++++ +
Sbjct: 285 SLPAFICLGIVPVLIAMLPS 304
>gi|148642656|ref|YP_001273169.1| type II secretion system protein, GspF [Methanobrevibacter smithii
ATCC 35061]
gi|148551673|gb|ABQ86801.1| type II secretion system protein, GspF [Methanobrevibacter smithii
ATCC 35061]
Length = 305
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/245 (15%), Positives = 93/245 (37%), Gaps = 14/245 (5%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + KLN + ++I NKL + L L + + I + L
Sbjct: 32 KRNKTKKEINPKLFTKLNFSEVKKQKDIQNKLFN--KLRKIFLKYFLGKKTIATEILMFL 89
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ I G++ + + ++++I P + + + + P AL +
Sbjct: 90 VLFAIAGFEIAG-----IYLTSIVMIYIFMLYFPKIS----QKHQYDDLNFELPYALRHM 140
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+++G + L V+ LS E + E+ + + + A R +
Sbjct: 141 ATELKAGKGLHDTLLTVS---IANYGSLSGEFKRVLKEIKYGKSSEDALMEMSLRVSSEG 197
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ A ++ + R G ++ +SL V+ + + ++ ++ + L + + I L +
Sbjct: 198 LSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFIAILAPV 257
Query: 311 ILVII 315
I++I+
Sbjct: 258 IILIM 262
>gi|78062902|ref|YP_372810.1| type II secretion system protein [Burkholderia sp. 383]
gi|77970787|gb|ABB12166.1| type II secretion system protein [Burkholderia sp. 383]
Length = 325
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/310 (16%), Positives = 110/310 (35%), Gaps = 25/310 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
AV F++I A+ + L R +R R ++++ T
Sbjct: 6 LFAVGAFAMILAIGLVL---SSLFDRASHTPAQRIRARMRRLSPSLAGRDGHASATPGVA 62
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
++ L+A L + ++ VR+VV I
Sbjct: 63 LFNLERRQGRLRAWLQRRVTRVR----------AVGGKGGVRIVVAS-----TIAGAIAA 107
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
++ ++ + A LV++ + A+PDA+D+++ V +GI
Sbjct: 108 IVAVKLIGPPGFLRPLIYAGLPLVAMRASYRALVERFRIRFLEAFPDAIDVIVRAVRAGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ QA+ V G + P+ L + + +R + T L
Sbjct: 168 PVTQAISMVG---DGAAEPVRATFRSMGDSLRVGADLKDVLTQAADRLMIADFSFFTVYL 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL---VII 315
+ G S+G++L L S R+ R + + +A + ++T II +P +++ ++
Sbjct: 225 LLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRIT-TNIISAVPFVMIGALFLV 283
Query: 316 GPAILSIIDT 325
+ ++ +
Sbjct: 284 NRDYVMLLFS 293
>gi|313126950|ref|YP_004037220.1| archaeal flagella assembly protein j [Halogeometricum borinquense
DSM 11551]
gi|312293315|gb|ADQ67775.1| archaeal flagella assembly protein J [Halogeometricum borinquense
DSM 11551]
Length = 719
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/322 (18%), Positives = 120/322 (37%), Gaps = 17/322 (5%)
Query: 12 TELAVAITTAVSIFSLIYAVVI-PSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L V I + + S+ + V + S R SVA + + D+ +
Sbjct: 318 PLLRVIIYLGLPLASVAFVVYVDSVTESLRAPGRTGSVADADDASGESNAPVAVTDAEAE 377
Query: 71 RLRTR--DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ ++ R + L L G + L V L + +I++
Sbjct: 378 IVTADGGVLENDRWRANRERLAVYDRLSVATRALSQPGQSMLENPLYTLAVTLPLGLIWI 437
Query: 129 ILGI----------IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
L + + + F V ++ + L ++R +
Sbjct: 438 ALTLDVRSAVQTLRAAVLPGLEGEWTAFAAVVDGPLVELTLLSMGGITLAYELRKRRLKA 497
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+R PD LD + E+G+++ ++L R+A+ P+SEE+ T ++ + + + A
Sbjct: 498 IEREMPDFLDRMASVNEAGVTVVKSLHRLAQ---SDLGPISEELRRTWRDIQWGASLRNA 554
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F R Q+ V A ++ + + LR+ +E + R + E++ + L
Sbjct: 555 LRGFDRRAQVPMVSRAVTLIMNAVAASGEVAPVLRIAANEAQDSRRLLRERRQEMM-TYL 613
Query: 299 TVPMIIFFLPVLILVIIGPAIL 320
V I FF+ + I+V + A +
Sbjct: 614 VVIYISFFVFLGIVVALTLAFI 635
Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/310 (12%), Positives = 99/310 (31%), Gaps = 3/310 (0%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+++ + V+ P L S+ + + + Q++S+ +S
Sbjct: 8 LVLAVIFCLPVVLSPVSSRANLFITRISLPLFGWHVMNESPRRRQQESSLRAAFVGESHR 67
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI--FG 137
+ + L + ++ AA +++ + + P + + + +
Sbjct: 68 VYSSKTLLMSAVFGIAGSVFGVYFAALIVQTFAVPASALREALPPALGFLAAVASMPNLS 127
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+L + + ++ + R+ I A P + + SG
Sbjct: 128 VYELFGLVLVSSATVGATLAAGTYVVRWEYLDQRARARRVQIDAALPQTIAFIYALSRSG 187
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + L + E+ E + +F + A RT + + T+
Sbjct: 188 MPFQKVLATLTENQHVYGEAAREFGVAVNDVQTFGTDLPTALRRMAERTPSQRLDDFTEN 247
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM-IIFFLPVLILVIIG 316
L G S+ L ++E + ++ L V + ++ P+ ++ I+
Sbjct: 248 LTSVLTSGQSLSAFLHEQYDRFQAESEAQQQQYLELLATFAEVYVTVLVAGPLFLITILV 307
Query: 317 PAILSIIDTM 326
L + DT+
Sbjct: 308 VVGLVMQDTL 317
>gi|158314420|ref|YP_001506928.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158109825|gb|ABW12022.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 301
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 104/312 (33%), Gaps = 15/312 (4%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + V ++A+V+ + + + +T + +
Sbjct: 4 LLMLLGVGAGVGLWALVVWLFPPRPSLDEVFARLNPTPVSPAAPMTVPAEQDGWAAR--- 60
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ L A L + + L G S L + + L+ +
Sbjct: 61 ----MGRPFVGLLRAAGLPTDALRQDLATLG----RSPEAHLAEKATAAVAGLLFPSVVG 112
Query: 136 FGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ +P+ + V +L+ VGF P + + +++ + + A L L+ + +
Sbjct: 113 LAFAAGGRPFPWAVPVAVALLLTVVGFLLPDLTVKAEADRQRRAFRHALSAYLSLIQVLL 172
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G ++ AL A G L T E + V Q+ +
Sbjct: 173 AGGAGVETALTDAANVGNGWPFVAIRRALRTARETRI--SPWVGLGQLGVELQIAELTEL 230
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A+ + G + SL + R + +AE +A + ++++P ++ IL +
Sbjct: 231 ADAVALAGTEGARVRQSLDAKAAALRVRQAQDAEAEANAATERMSIPGVL-IAIGFILFV 289
Query: 315 IGPAILSIIDTM 326
PA+ I ++
Sbjct: 290 FYPALTQITRSL 301
>gi|326445374|ref|ZP_08220108.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
27064]
Length = 299
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 106/312 (33%), Gaps = 25/312 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK----DSASSRLR 73
I A++ L+ A G +L + + R + S + + + LR
Sbjct: 9 IGGALAGLGLVIAARGILPGRPDLGDVLSRMDATRLENLDRNRDSAPRNLMEKAGAFLLR 68
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T +LR ++L L ++ K+ A + ++ +L +
Sbjct: 69 TAGEGTLRLPRQQLELVGRSPAAHLGRKIALA----------------LYGLLLPVLAVS 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L PF + A + + V + P + + + + + A L L+ +
Sbjct: 113 LANLVGYPL--PFAIPAVAGLGLAVVFWLLPDLQLKQQAVEAKEDFRHAVKAYLRLVQLE 170
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ + QAL++ AE G ++ + + + +
Sbjct: 171 RAADAAPTQALKKAAEVGEGW--VFAKIRDTITRAELEGISPWEGLKRLSIELDVPELGA 228
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + G ++GD+L + A+ +A K+ +P+ + L ++ +
Sbjct: 229 PADIIAIAGEEGAAVGDTLGAQAKSLSGALVTSAKAQANMASEKMVMPVAMLVL-IMTVY 287
Query: 314 IIGPAILSIIDT 325
I PA+ I+ +
Sbjct: 288 IGYPALSRIMAS 299
>gi|77456873|ref|YP_346378.1| type II secretion system protein [Pseudomonas fluorescens Pf0-1]
gi|77380876|gb|ABA72389.1| putative Flp pilus assembly protein TadB [Pseudomonas fluorescens
Pf0-1]
Length = 293
Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 78/238 (32%), Gaps = 24/238 (10%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + AG L + L++ +I L++G F +L
Sbjct: 46 LAEKPRWAGLERAFLRAGLGHPDRLELWLLLWAFGSVIGLVIGGWIGFLLLLMLPPLAL- 104
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V++ Q+R + P LD + ++SG ++ A+
Sbjct: 105 ----------------RVYVIWRYQRRLRRMIEQLPQLLDHTVRSLKSGRTLADAVLGA- 147
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
I PL M + + A + + D +R L + RYG +
Sbjct: 148 --IDASEDPLKHAMGRVQRNVQLGVSLPEAVGDVAELYEKDELRLFAVGLKVNHRYGGNA 205
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSII 323
+ L L+ R + +A + ++T ++ LPV + ++ P L +
Sbjct: 206 SELLENLIRMIRERDQASRQLRAMTGETRITA-WVLGLLPVGLAGYFLLSNPKYLIAM 262
>gi|295395664|ref|ZP_06805856.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971480|gb|EFG47363.1| possible integral membrane protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 308
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 17/239 (7%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+S R F + + + +L A RS S+ LL+ L+ ++F+IL
Sbjct: 46 RSSRIFPADRIFRKTRFGDKLSQQLIQANLRSITSIEYLLIALLITAVVFIIL------- 98
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + L+ + + L +++++ + P+ ++ +G
Sbjct: 99 -------NRYIAILYAFLLSALLLFGFWKVLDVLKERQRAKFFQQLPEFARIMANSTGAG 151
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+SI AL A ++ P S E EL +A E R +
Sbjct: 152 LSIHTALGVAASELPD---PASREFSALKRELEIGTPLDIALERMSERISGRDLDVLVST 208
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L+ + R G S+ SLR + + + E K T +++ F +L++
Sbjct: 209 LVIAQRSGGSLISSLRNMSDTLEFRKETKREVKTLVSQSSYTGYLVVAFGVGFVLLLAS 267
>gi|225376646|ref|ZP_03753867.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
16841]
gi|225211529|gb|EEG93883.1| hypothetical protein ROSEINA2194_02288 [Roseburia inulinivorans DSM
16841]
Length = 240
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 85/203 (41%), Gaps = 5/203 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ ++ ++ + + +V++ ++ + V+KR+ +++ + D L
Sbjct: 7 ILMYFLFGILISGIVYLFYHIVPVSVVIGFLTAVYVEKMYAESTVKKRKKTLRLQFKDFL 66
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL----SFLPNRQVAFENFY 243
+ + V +G A++ +D+ ++ +L + + FE+F
Sbjct: 67 GSMSVAVRAGNVEIYAVKSALDDLRLSYSSKADIVLEVENMILQYEKGGIPLKELFEDFA 126
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+R++++ + + + GD L R + +E E + + K + M+
Sbjct: 127 DRSELEDIHSFAAVYSVIEGKSDRFGDILTQTEEIIRDKIEIEQEIETTIISAK-SETMV 185
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ +P++I+V + ++D++
Sbjct: 186 MLIMPIVIVVAMSGMGSGLLDSL 208
>gi|70734196|ref|YP_257836.1| hypothetical protein PFL_0694 [Pseudomonas fluorescens Pf-5]
gi|68348495|gb|AAY96101.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 293
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 7/160 (4%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+I+ L Q+R + P LD + ++SG ++ A+ I + PL M
Sbjct: 107 YIAWLYQRRLKRMIEQLPALLDHSVRSLKSGRTLADAVLGA---IEASNDPLKSAMGRIQ 163
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ N A +F + D +R L + RYG + + L L+ R
Sbjct: 164 RNVQLGVNLPDAVSDFAEFYEQDELRMFALGLKVNHRYGGNASELLENLIKLIREREQGA 223
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSII 323
+ A + ++T ++ LP+L++ ++ P + +
Sbjct: 224 RQLSAMTGETRMTA-WVLGTLPLLLVGYFMLTNPGYMLGM 262
>gi|86144314|ref|ZP_01062646.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
gi|85837213|gb|EAQ55325.1| Flp pilus assembly protein TadB [Vibrio sp. MED222]
Length = 304
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 4/187 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ I + F LR ++ + V V+ +NL ++ K +PDAL+
Sbjct: 79 LVLFISVTTSATYALNEFFLRQDFIVCLIVVEPLLFFVFYNNLKARQVERFKTNFPDALN 138
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + SG SI A V + + + +E L + E N
Sbjct: 139 ILSGAISSGQSIIHAFEYVGKQLDN---EVGKEFKFMAERLLIGEDPDDVLERSSNTFPY 195
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G + D + + R +E +K A + + + +I LP
Sbjct: 196 LEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALTSEARASAKIIAC-LP 254
Query: 309 VLILVII 315
V+ L+I+
Sbjct: 255 VIFLIIL 261
>gi|115358175|ref|YP_775313.1| type II secretion system protein [Burkholderia ambifaria AMMD]
gi|115283463|gb|ABI88979.1| type II secretion system protein [Burkholderia ambifaria AMMD]
Length = 325
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 104/298 (34%), Gaps = 22/298 (7%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
A+ F +I + + L R + +R R +++ + T
Sbjct: 6 LFALGAFVVILVIGLML---SALLDRARQAPEQRIRERMRRLAPSLAGREAGANATPGVA 62
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
++ ++A L + + + + I+ I I+ +
Sbjct: 63 LFNLPRRQGRVRAWLQRYVTRVR--------AVGGERGMRIVIASAIVGEIAAIVAMKLV 114
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ VG +L + LV++ + A+PDA+DL++ V +GI
Sbjct: 115 ALPSVLHPLIYVGLPLLAMRTSY-------RALVERFRLRFLEAFPDAIDLIVRAVRAGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ QA+ V + P+ L + + +R + T L
Sbjct: 168 PVTQAISTVG---DSAAEPVRSTFRTMGDSLRVGVDLKDVLTQASDRLMIADFSFFTVYL 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G S+G++L L S R+ R + + +A + ++T II +P +++ +
Sbjct: 225 LLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRIT-TKIISAVPFVMIGALF 281
>gi|257790636|ref|YP_003181242.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257474533|gb|ACV54853.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 288
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/273 (19%), Positives = 103/273 (37%), Gaps = 12/273 (4%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL 113
+ K + R +L V + + V + + L +G
Sbjct: 28 RRLGGIESGPVKRPSRRRRGETRLDTLTYSVTRYVPMSEKVADATRDMLSRSGV--TMPA 85
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+R+ G+I + + + L P W+
Sbjct: 86 ASFWAIRVASFSAGAAAGLIAMPLVGGVQGLAAAGALAVAGLAA------PQAWLLARRA 139
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + + R PDALDL+ IC+ +G S + AL V + G + A
Sbjct: 140 EWRDELDRQLPDALDLMAICISAGSSFEGALASVGTRMDGAIAEAFARVAKEAAY----S 195
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+R A +R Q++ + T +L+Q++R G+S+ D +R+ R+ER + +
Sbjct: 196 SRSEALLGLADRAQVNSITFFTASLVQAERAGSSLVDIIRMQAQSVRTERRLRVDDMTNK 255
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L K+ PM++ LP +I++++ P IL +
Sbjct: 256 LSTKMLFPMLLLMLPSIIMLMLAPMILQLGQFF 288
>gi|257053876|ref|YP_003131709.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
gi|256692639|gb|ACV12976.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
Length = 802
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/313 (15%), Positives = 108/313 (34%), Gaps = 20/313 (6%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLG-SGELEKRMKSVAVEREILRKQQITSL 63
+ +L + +S + +V E + ++ Q +
Sbjct: 310 VTETLPFLQLLTYLIIPLSNALFVVFLVQKLEELGVARESGVAALEGGSPDQNAPQTPTA 369
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
D R + L + + K + R I R+
Sbjct: 370 TADGGHLRRLSAGRSQLALYDRISRFKRV--------------LRRPAQTIIWNPTRIFY 415
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGA-VILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + L + + + Y F LR+ +++ + + + +R I+ A
Sbjct: 416 LTVPIALVWVALRAPGTITGYGFNLRLADDLLVQTTLFLIGTFAVVREIYSRRIDRIEAA 475
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+ L+ L E+G+S ++L RV L++E+ ++S N A F
Sbjct: 476 TPELLERLASLNEAGMSFVESLDRVR---DSDLGVLTDEVDRIWTDISMGANSPDALRRF 532
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + + L+ + R +G LR+ S+ RS+ + E++ + L V
Sbjct: 533 GQRVRTASIARVVTLLMHAMRASGRLGPVLRIASSQARSDLELRRERR-QQMFTYLVVIY 591
Query: 303 IIFFLPVLILVII 315
+ FF+ ++I+ +
Sbjct: 592 VSFFVFLVIIFAV 604
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 8/190 (4%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ D++ V L V + A + + R+ I A P +
Sbjct: 121 IVLPADQVFIVLTAGGVVLGALSAVVTYVARWQLPAGTAEVRRRGINEALPRTVAFTYAL 180
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVR 252
G++ +R + + ++E+ + + E+ F + A +R+ D R
Sbjct: 181 SRGGLAFPDVMRTLGRN-REIYGDAADEVSVAVREMDVFGTDMISAIRRTAHRSPSDTFR 239
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLME----AEKKAASLGPKLT--VPMIIFF 306
+ L G I L + E E A +T V ++F
Sbjct: 240 TFGENLASVLASGQHIPAFLEDQYDRLQEEAEQRQEEVLELLATIAEAYVTTLVAGVLFL 299
Query: 307 LPVLILVIIG 316
L +L++ +
Sbjct: 300 LTILLVFGLT 309
>gi|320008844|gb|ADW03694.1| Type II secretion system F domain protein [Streptomyces
flavogriseus ATCC 33331]
Length = 311
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 5/196 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ L L L G + +++ KR + P+ +
Sbjct: 87 FLYVVGSVAAFWLIAASLLASFFGPLAGLAALWGANTFLNWHRTKRTEAFISQLPEISRV 146
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L +G+S+ ++ A+++ P +E+ + +L A R
Sbjct: 147 LANATHAGLSLRTSIAMAADELES---PAGDELRVVADQLGVGRTLDDALGELAERLPSR 203
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ LI S+R G + SLR L + E + T +
Sbjct: 204 ELVVLVSTLILSNRAGGQVVSSLRNLTVTLEERKETRREVRTQLSQINATAYAVPAIGIG 263
Query: 310 LILVI--IGPAILSII 323
+L++ I P L +
Sbjct: 264 AMLLVNSILPGALDRM 279
>gi|303241928|ref|ZP_07328421.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
cellulolyticus CD2]
gi|302590483|gb|EFL60238.1| Flp pilus assembly protein TadB-like protein [Acetivibrio
cellulolyticus CD2]
Length = 305
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 87/234 (37%), Gaps = 19/234 (8%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
V E I N++ AG+ ++S I +V ++V ++ +G +++
Sbjct: 41 IVDVGKKNKKDHFEGIRNRIGMAGY--KFSPEIYIVFKVVSILLTFFIGQLFL------- 91
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ + + VGF P++ + + KR+ + + LD + +G ++
Sbjct: 92 -----KDIVFSLPVAVVGFFIPNLLLKQRISKRKDLMTEQLIEWLDYMSSMGTAGKALLT 146
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL E PL + A + + AFEN + + + + A+
Sbjct: 147 ALDYSIEKSRD---PLKSVLEKVSANIKKSQSLSEAFENVTKQIPIPEFKMVSMAISVHS 203
Query: 263 R-YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + S+ + + A++ K+ II +P+ + ++I
Sbjct: 204 EITNEGWPRTFENISSQMKENGDLFNTIDASNTESKINS-YIIGLMPLAMFIVI 256
>gi|116671218|ref|YP_832151.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116611327|gb|ABK04051.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 284
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 18/237 (7%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ + K + + LRAAG + V + L+ + + +
Sbjct: 19 SAWEQPQAAKRRPQSSRLQDLLRAAGIEN-------------VSGLGLVSTCVGVAAFVS 65
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
++ + G G P + +KR +++++ WPD +D L + +G+S+
Sbjct: 66 IVFFAVTRSWPISACFGLFGGWLPMAVVRWRARKRTATLRQLWPDVVDHLRSAIRAGLSL 125
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+AL ++ E L A+ A R +AL
Sbjct: 126 PEALIQLGEK---GPEELRHVFRDFGADYRAGGQFDPALNRLKERLADPVADRIVEALRL 182
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G +G L L R +E +A + + P +++V++
Sbjct: 183 TREVGGSDLGRLLGTLGEFLRESARTRSELEARQSWT-VNAARLAVAAPWIVMVLLA 238
>gi|261349609|ref|ZP_05975026.1| putative bacterial type II secretion system protein F domain
protein [Methanobrevibacter smithii DSM 2374]
gi|288861567|gb|EFC93865.1| putative bacterial type II secretion system protein F domain
protein [Methanobrevibacter smithii DSM 2374]
Length = 305
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 92/245 (37%), Gaps = 14/245 (5%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + KLN + ++ NKL + L L + + I + L
Sbjct: 32 KRNKTKKEIDPKLFTKLNFSEVKKQKDTQNKLFN--KLRKIFLKYFLGKKTIATEILMFL 89
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ I G++ + + ++++I P + + + + P AL +
Sbjct: 90 VLFAIAGFEIAG-----IYLTSIVMIYIFMLYFPKIS----QKHQYDDLNFELPYALRHM 140
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+++G + L V+ LS E + E+ + + + A R +
Sbjct: 141 ATELKAGKGLHDTLLTVS---IANYGSLSGEFKRVLKEIKYGKSSEDALMEMSLRVSSEG 197
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ A ++ + R G ++ +SL V+ + + ++ ++ + L + + I L +
Sbjct: 198 LSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFIAILAPV 257
Query: 311 ILVII 315
I++I+
Sbjct: 258 IILIM 262
>gi|315652231|ref|ZP_07905226.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
gi|315485537|gb|EFU75924.1| Kae1-associated kinase [Eubacterium saburreum DSM 3986]
Length = 266
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/214 (18%), Positives = 80/214 (37%), Gaps = 7/214 (3%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + +RL+ ++ ++G F + F++ + AV + + G A
Sbjct: 17 GLMGNADDYHIYHMRLIDYLVGFLIGFALGFVVVMIF---FRVVIFAVTVGAFCGIPAIK 73
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE---EM 222
+ +KRQ + + D L+ L SG + +A +D+ S+ E
Sbjct: 74 YYRKYRKEKRQRDLLIEFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNET 133
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ IA ++ + +F R ++ V + T R G I + +
Sbjct: 134 RIIIAGMTNNIIIEDLLRDFAERCGLEDVESFTSTFESGLRQGGDIRQVVWDSRKIINDK 193
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+E E K L K I+ +P++I+V +
Sbjct: 194 IEIEMEIKTM-LTEKENELNIMMVMPLIIMVTLS 226
>gi|269986708|gb|EEZ92988.1| type II secretion system protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 298
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/222 (16%), Positives = 84/222 (37%), Gaps = 9/222 (4%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV---- 150
+ L A +Y I + + + ++ L++G+ + + + +++
Sbjct: 33 TPTLKQDLLQAAMDIDYLDYIAAGIVVALVLVGLMVGVSALVLLIAIKKNLLTIKIEAIL 92
Query: 151 -GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ ++ V F + KR I+ A ++I V SG+ + AL VA
Sbjct: 93 PVLIFIVPGVYFFYFLNYPKLQAVKRTKLIEEQVVFATREIMIKVGSGVPVFNALLDVAN 152
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G +S+E I E+ ++ A ++ R +R ++ + + G+ +
Sbjct: 153 ---GNYGVVSDEFKEAIEEIESGVPQEDALDHLARRVPSQSLRRTIDIMLNAIKSGSDVA 209
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPM-IIFFLPVL 310
+L ++ ++ + + A L P M I +P L
Sbjct: 210 GTLSLINDMLIKKQQSDMKSYAGELTPMSMAYMLISVVMPSL 251
>gi|222445846|ref|ZP_03608361.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
DSM 2375]
gi|222435411|gb|EEE42576.1| hypothetical protein METSMIALI_01490 [Methanobrevibacter smithii
DSM 2375]
Length = 305
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 92/245 (37%), Gaps = 14/245 (5%)
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + KLN + ++ NKL + L L + + I + L
Sbjct: 32 KRNKTKKEIDPKLFTKLNFSEVKKQKDTQNKLFN--KLRKIFLKYFLGKKTIATEILMFL 89
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ I G++ + + ++++I P + + + + P AL +
Sbjct: 90 VLFAIAGFEIAG-----IYLTSIVMIYIFMLYFPKIS----QKHQYDDLNFELPYALRHM 140
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+++G + L V+ LS E + E+ + + + A R +
Sbjct: 141 ATELKAGKGLHDTLLTVS---IANYGSLSGEFKRVLKEIKYGKSSEDALMEMSLRVSSEG 197
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ A ++ + R G ++ +SL V+ + + ++ ++ + L + + I L +
Sbjct: 198 LSRAVHQIVGTLRVGGNLANSLNVIAEDISFDMQIKLKEYSQKLNGFILIYTFIAILAPV 257
Query: 311 ILVII 315
I++I+
Sbjct: 258 IILIM 262
>gi|300741823|ref|ZP_07071844.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
gi|300381008|gb|EFJ77570.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
Length = 284
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 87/240 (36%), Gaps = 20/240 (8%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ IV LR AG + + V ++ ++ +L +
Sbjct: 29 RTRREPKIVVTLRKAGMH-TVTPSAFTGVSILSGVLAGVLLFALTGLWS----------- 76
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
L GF P V +++ + R+ + + WPDA+D L + +G+S+ +AL +++
Sbjct: 77 -FAFLGTGGGFIMPRVVVNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLS-- 133
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIG 269
L E ++ + + N +AL + G +G
Sbjct: 134 -YRGPYELREAFARFGSDYRATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLG 192
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIIDTMK 327
L L + R AE +A + + P ++L+++ PA+ +I ++
Sbjct: 193 RLLGTLSNFLRENARTRAELQARQSWT-VNAARLACVAPWVVLMLMATQPAVRNIYNSFA 251
>gi|90406746|ref|ZP_01214939.1| MaoC protein [Psychromonas sp. CNPT3]
gi|90312199|gb|EAS40291.1| MaoC protein [Psychromonas sp. CNPT3]
Length = 308
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 69/159 (43%), Gaps = 7/159 (4%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ ++ + ++P ++ + V +GIS+ QA+ +V E G L+ E L
Sbjct: 121 YWFIRAQQIKEFEHSFPQVIEQISRAVAAGISVPQAIAQVPEYQQGL---LAHEFSLLRD 177
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L + + A + R + ALI + G + + L L + ++
Sbjct: 178 RLEIGISLKQALQQSTYRLPYSGFHFFSVALILNQENGGQLREVLHSLSRTLHNNHAIKM 237
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSII 323
+ K+ + P++T +++ LP+ ++ ++ PA +++
Sbjct: 238 KIKSLTAEPRMTA-LVLACLPLCLISVMYFKSPASFAVL 275
>gi|294139874|ref|YP_003555852.1| Flp pilus assembly protein TadB [Shewanella violacea DSS12]
gi|293326343|dbj|BAJ01074.1| Flp pilus assembly protein TadB, putative [Shewanella violacea
DSS12]
Length = 311
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 7/210 (3%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R S L ++++ L I + P +R+ V+L+ +GF
Sbjct: 67 LRRLESRIDNLFGLKGKSLLYMGLMASAITSWFMSGFLPTYVRLTLVLLVPTMGFLGFFW 126
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ ++ K A+P L + V +GIS+ QA+ +V+E Q L E L
Sbjct: 127 LMRSMQMK---QFDHAFPQVLGQISRAVAAGISVPQAIAQVSEY---QQGFLGREFELIR 180
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L+ + + E R T ALI + G + + L L ++
Sbjct: 181 DRLAIGISLKQTLEQACYRLPYASFHFFTVALILNQENGGQLREVLHSLGRTLHDNGAIK 240
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ K+ + P++T +I+ LP++++ I+
Sbjct: 241 MKIKSLTAEPRMTA-LILASLPLILISIMF 269
>gi|317472142|ref|ZP_07931474.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
gi|316900546|gb|EFV22528.1| hypothetical protein HMPREF1011_01824 [Anaerostipes sp. 3_2_56FAA]
Length = 259
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 71/203 (34%), Gaps = 8/203 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L ++ Y F R+ IL F + R + + + L
Sbjct: 26 AVLKAAQGMILFFIICYLFYDRIWLGILYAVFCFPYMLYQAREERKMRIRQSRLEFKEML 85
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFY 243
+ + +G S++ A+R +D+ + L +E+ L A L +V +
Sbjct: 86 LSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSLVCAGLEVNQPIEVLMDKMA 145
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R +D Q L R G ++ ++ V + ++ E + K I
Sbjct: 146 LRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTM-VSAKRMEQKI 204
Query: 304 IFFLPVLILV---IIGPAILSII 323
+ +P IL+ ++ P ++
Sbjct: 205 MSVMPFFILLYVRLMNPGYFQVL 227
>gi|266621096|ref|ZP_06114031.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867252|gb|EFC99550.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 245
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/187 (15%), Positives = 70/187 (37%), Gaps = 7/187 (3%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
Y F + I++ G C P + ++L +R + + + + +L + +G S++
Sbjct: 28 SYVFYRSLPVFIMLSPFGLCYPLIKKADLKDQRLKRLNLEFKEGILILSSFLSAGYSVEN 87
Query: 203 ALRRVAED---IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
A + + G S + E ++ + F +R+ +D VRN +
Sbjct: 88 AFSASIRELAVMYGASGMMVLEFSHMEGQIRMNRPVEQVLMEFGDRSGLDDVRNFAEVFA 147
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---G 316
+ R G + + R + ++ E + K I+ +P +++ +
Sbjct: 148 AAKRSGGELVSIINHTSGVIRDKIQIQEEIATMTA-AKQFEQKIMNLIPFFLVLYVDVSS 206
Query: 317 PAILSII 323
P ++
Sbjct: 207 PGFFDMM 213
>gi|15789974|ref|NP_279798.1| hypothetical protein VNG0822C [Halobacterium sp. NRC-1]
gi|10580392|gb|AAG19278.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 535
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/325 (12%), Positives = 106/325 (32%), Gaps = 20/325 (6%)
Query: 12 TELAVAITTAVSI-------FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
+ I + + F + A V+ + + S+ + +
Sbjct: 127 PLFLITILVVIGLTLGGTLGFLRLTAFVLVPGATFGFAVYLDSITDATVGGPGDEQSVGG 186
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG------FRSEYSLNILLV 118
+ S + + + + + + + + +R L ++L
Sbjct: 187 EQSRFQSIPSPSAALCPDGGADAAVAPLGSSPENRARFAISERLRPVLYRLRNPLTVVLE 246
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA---VILIGYVGFCAPSVWISNLVQKR 175
++ + + +++ A ++ V ++R
Sbjct: 247 TPTLLFWVSCPIAAVYLGSQWWAPLSTGVFAPAAYDDALVHATVFVVGTFAVAYETARRR 306
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ +I+ PD LD E+G+ A+ + G L++E+ T A++ +
Sbjct: 307 RKAIEAEVPDFLDRFASTNEAGM---AAVESFGRTVDGDLGALTQELERTWADIQWGARI 363
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A F +R V + ++G LR+ +E + R +E +++ L
Sbjct: 364 EHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLRIAANEATASRRLERDRRNELL- 422
Query: 296 PKLTVPMIIFFLPVLILVIIGPAIL 320
+ V + FF+ + I+V + +
Sbjct: 423 TYVVVIYVSFFVFIAIIVALDTIFI 447
Score = 39.4 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 7/149 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + SG+ + + LR +A + E + ++ + A E
Sbjct: 1 MERTVAFMYALSRSGMPLAEVLRILARNQPVYGAAAEEMAVAVTDIDNYGADIITALERV 60
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE----RLMEAEKKAASLGPKL 298
+RT D + T+ L + G+ + L+ E + E A +
Sbjct: 61 GSRTPSDDLAEFTENLGSILQSGSDLPAFLKQEYEYYAEEAEATQSQFLELLATLAEAYV 120
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
T ++ P+ ++ I+ L++ T+
Sbjct: 121 T---VLVAGPLFLITILVVIGLTLGGTLG 146
>gi|320533995|ref|ZP_08034553.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133783|gb|EFW26173.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 307
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/313 (15%), Positives = 109/313 (34%), Gaps = 8/313 (2%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I ++ + L + ++ + +++ + S
Sbjct: 1 MITWILIGGALSGAGLFALTLILAPPATQPAAALAELDTRRDEGRMREDVRRLNPSEADT 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+L + L + + ++ L G SL +V + + + ++
Sbjct: 61 PEWVDTLSLRITSLVRRTGIDLSSLTGDLAVVG----RSLERHMVTSVFLGVGGFAAPLL 116
Query: 134 WIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + + + + +G VG P++ + + + + LDL+ +
Sbjct: 117 IVALMQVMGVPLGWSVPLLLSVALGVVGLLLPTLRLRRDADEARRDFRHVVGSYLDLVAM 176
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G + +AL A + L L +A L A + ++D +R
Sbjct: 177 SLSAGRGVPEALDA-ASSLSDDPAMLRIRDALDVARLR-GDTPWAALGRLGTQLRIDELR 234
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + AL G I +SL S R L +AE KA + V ++ + I+
Sbjct: 235 DLSAALALVAEDGAKIRESLGARASSMRRRDLSDAEGKAGENSESMLVAQLVVAM-GFIV 293
Query: 313 VIIGPAILSIIDT 325
++ PA+ II +
Sbjct: 294 FLVYPALTGIIGS 306
>gi|149909166|ref|ZP_01897823.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
gi|149807690|gb|EDM67636.1| TadB-like protein involved in pilus formation and/or
proteinsecretion [Moritella sp. PE36]
Length = 311
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 75/191 (39%), Gaps = 7/191 (3%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ +IL ++ + + + + +R+ + + V + + A+
Sbjct: 86 LLIILAVVVLGIWFFIPFFSSLVRMMIIAIAFPVVLGGSYWLMRTRQHR---EFDAAFTQ 142
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + V +GIS+ QA+ ++A+ Q L E L +L + A R
Sbjct: 143 VLGQMSRAVSAGISVPQAIAQIADY---QQGMLGREFSLIRDKLEIGIGLKQALNQASIR 199
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ALI ++ G + + L L ++ + ++ + P++T I+
Sbjct: 200 LPYVSFHFFSVALILNEENGGQLREVLHSLSRTVHDNAAIKMKIRSLTAEPRMTAA-ILA 258
Query: 306 FLPVLILVIIG 316
LP+L++ ++
Sbjct: 259 SLPILLIGVMY 269
>gi|37676257|ref|NP_936653.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|37200798|dbj|BAC96623.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
Length = 305
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 4/187 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I + + L F L++ + L+ Y V++ L Q + + K +PDAL+
Sbjct: 79 IGLFLLVTAIALYLTNDFVLQMNFLTLLMYAQPPLFVVFVIKLQQAKAAKFKEDFPDALN 138
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + SG SI A V + + ++ L L +
Sbjct: 139 ILSGALSSGQSIVHAFEYVGNQLQN---EVGKQFKLMAERLLMGEDPDDVLSRSAASFPY 195
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G + + + + R ++ +K A + +++ +I LP
Sbjct: 196 VEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALTSEARMSAKIIAC-LP 254
Query: 309 VLILVII 315
V+ L+I+
Sbjct: 255 VVFLLIL 261
>gi|325963897|ref|YP_004241803.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469984|gb|ADX73669.1| Flp pilus assembly protein TadB [Arthrobacter phenanthrenivorans
Sphe3]
Length = 285
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 23/225 (10%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + L +AG LI + + + L+ Y
Sbjct: 29 PRERKTSRLADLLASAGVDKVSP-------------GGLIGTCLGLGLFVALVFYTVSRS 75
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
P + +KR + +++ WPD +D L + +G+ + +AL ++ +
Sbjct: 76 WPIAGCFALFAAWLPISILRWRAKKRSALLRQLWPDVVDHLRSAIRAGLPLPEALIQLGD 135
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SI 268
L A+ + +R +AL + G +
Sbjct: 136 K---GPEELRHVFRDFGADYRAGGQFDASLNKLKHRLADPVADRIVEALRLTREVGGSDL 192
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGP------KLTVPMIIFFL 307
G L L R +E +A + P I+ L
Sbjct: 193 GKLLGTLAEFLRESARTRSELEARQSWTINAARLAVAAPWIVMIL 237
>gi|260587079|ref|ZP_05852992.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
gi|260542569|gb|EEX23138.1| putative bacterial type II secretion system protein F domain
protein [Blautia hansenii DSM 20583]
Length = 402
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/184 (19%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKR---QSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+L +G + +++ + ++R +PD + L++ + +G +I +A+ ++
Sbjct: 220 IICMLSLVLGLGVYPLQKEKAKKQQELVRKEMQRDYPDIVQKLVLFLRAGFTIRKAMEKI 279
Query: 208 A-------EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A E + EE++ T E+ A+E F R + + + L+Q
Sbjct: 280 ADGYLRSREKYHAKERSAYEEIVRTCKEMQGGIYEAEAYERFGTRCGISQYKILSVLLVQ 339
Query: 261 SDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ + G ++ + L + ER A+ + KL +PM++ + VL++++I PA
Sbjct: 340 NLKKGNQNLLELLEREEAVAEDERKRSAKVRGEEASTKLLLPMVLQLIVVLMILMI-PAF 398
Query: 320 LSII 323
S +
Sbjct: 399 FSFL 402
>gi|326424176|ref|NP_762075.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|319999559|gb|AAO07065.2| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
Length = 305
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 4/187 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I + + L F L++ + L+ Y V++ L Q + + K +PDAL+
Sbjct: 79 IGLFLLVTAIALYLTNDFVLQMNFLTLLMYAQPPLFVVFVIKLQQAKAAKFKEDFPDALN 138
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + SG SI A V + + ++ L L +
Sbjct: 139 ILSGALSSGQSIVHAFEYVGNQLQN---EVGKQFKLMAERLLMGEDPDDVLSRSAASFPY 195
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G + + + + R ++ +K A + +++ +I LP
Sbjct: 196 VEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALTSEARMSAKIIAC-LP 254
Query: 309 VLILVII 315
V+ L+I+
Sbjct: 255 VVFLLIL 261
>gi|84386793|ref|ZP_00989818.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio splendidus 12B01]
gi|84378321|gb|EAP95179.1| TadB-like protein involved in pilus formation and/or protein
secretion [Vibrio splendidus 12B01]
Length = 304
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 77/200 (38%), Gaps = 7/200 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I F + +P + + F + + + ++ + L
Sbjct: 75 FIALSAIGFPASGHMLFPQLAMHHQLFAAVGLWFVCTCALVMYRRKMQVEEFEQGIINVL 134
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L+ V +G+S+ QA+ +V+E Q L E L+ + + + ++ R
Sbjct: 135 GLISRAVAAGLSVPQAIEQVSE---TQPGLLGREFSYIRDNLTLGLSLRQSLDDACVRLP 191
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
R + ALI + G + D L+ L R M + K+ + P++T + + L
Sbjct: 192 YSSFRYFSVALILNQSNGGQLRDILQSLSRTMHDNRAMRKKVKSLTSEPRMTA-LFLSIL 250
Query: 308 PVLI---LVIIGPAILSIID 324
P+ + + ++ PA++ +
Sbjct: 251 PLGLLGGIYLMEPAMIVQLF 270
>gi|311111714|ref|YP_003982936.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943208|gb|ADP39502.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 284
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 20/240 (8%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ I LR AG + + V ++ ++ +L +
Sbjct: 29 KTEREPKIAVTLRKAGMH-TITPSAFTGVSILSGVLAGVLLFALTGLWS----------- 76
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
L GF P V +++ + R+ + + WPDA+D L + +G+S+ +AL +++
Sbjct: 77 -FAFLGTGSGFIMPRVVVNHRAKVREGKLWQLWPDAVDHLRSAIRAGLSLPEALIQLS-- 133
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIG 269
L E ++ + + N +AL + G +G
Sbjct: 134 -YRGPYELREAFARFGSDYRATGDFVASLNRLKEYVADPVADNIVEALKIAREVGGSDLG 192
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIIDTMK 327
L L + R AE +A + + P ++L+++ PA+ +I ++
Sbjct: 193 RLLGTLSNFLRENARTRAELQARQSWT-VNAARLACVAPWVVLMLMATQPAVRNIYNSFA 251
>gi|320158387|ref|YP_004190765.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|319933699|gb|ADV88562.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 305
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 4/187 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I + + F L++ + L+ Y V++ L Q + + K +PDAL+
Sbjct: 79 IGLFLLVTAIALYFINDFVLQMDFLTLLMYAQPPLFVVFVIKLQQAKAAKFKEDFPDALN 138
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + SG SI A V + + ++ L L +
Sbjct: 139 ILSGALSSGQSIVHAFEYVGNQLQN---EVGKQFKLMAERLLMGEDPDDVLSRSAASFPY 195
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G + + + + R ++ +K A + +++ +I LP
Sbjct: 196 VEYFFFAATIRINLSRGGQLKEVISRINRIMFEARAIDKKKNALTSEARMSAKIIAC-LP 254
Query: 309 VLILVII 315
V+ L+I+
Sbjct: 255 VVFLLIL 261
>gi|238789151|ref|ZP_04632939.1| Type II secretion system protein F domain protein [Yersinia
frederiksenii ATCC 33641]
gi|238722683|gb|EEQ14335.1| Type II secretion system protein F domain protein [Yersinia
frederiksenii ATCC 33641]
Length = 187
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 4/158 (2%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ S K+ +P+ L ++ + SG SI+ L R +++ S PL E++L L+
Sbjct: 5 RKRHHSLFKKDFPEVLLMINMASGSGASINHVLERCGQEV---SGPLGHELVLICRRLNL 61
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + F + Y R ++ + + G + + L + E +K
Sbjct: 62 GESPETVFYDAYQRFNYPEFYFLITIILLNIQQGGQLKELTSRLSQVISKNKTTEQKKSV 121
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ +++V II +PV +++ I++M D+
Sbjct: 122 LTAQTRMSV-NIISAMPVAFSLLLYFIDAKNIESMWDN 158
>gi|228949329|ref|ZP_04111592.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228810312|gb|EEM56670.1| hypothetical protein bthur0007_54450 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 327
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 86/308 (27%), Gaps = 27/308 (8%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
V IF LI + +KR K A + Q ++K S + L
Sbjct: 13 GVCIFILIATFFVK-------DKRKKYTAESILKDLENQKALMEKRSKEEQDIDIPYTFL 65
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+F + L N+ + + I I
Sbjct: 66 DSFFNNFSFTEKLAPFNV--------IAEARRYEWFIGAKEYWTI------YIVGSTLLT 111
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ ++ +GF + +K + + + + ++
Sbjct: 112 GSIFLMLNGHIGCVIGYALGFYIHRFMLHVHRRKYKFVENDRISIYMKTMTNSLHILGTV 171
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A+ E + EE+ +L + A + + + + L
Sbjct: 172 IDAIE---EVKPLVHPSIREELDKATFKLKQGKSVAEALSSLDKKYPYKELIFYHEMLDV 228
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV---PMIIFFLPVLILVIIGP 317
+D+ G ++L + + ++ + + A + + I+ LP + +
Sbjct: 229 ADKNGGRNTEALESIALDFEDRKVKQMQLYAETTQGVKSFRNTASIVIALPFIFKFFMPQ 288
Query: 318 AILSIIDT 325
A ++ T
Sbjct: 289 AYSILMRT 296
>gi|18977364|ref|NP_578721.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
gi|18893045|gb|AAL81116.1| hypothetical protein PF0992 [Pyrococcus furiosus DSM 3638]
Length = 309
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/195 (20%), Positives = 81/195 (41%), Gaps = 8/195 (4%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+I L +GII L VG + G G+ P + + +R +++A
Sbjct: 46 YLVISLFIGIILGIVIYIFSSSIPGLLVGILAGFGGFGYFYPYI----RITRRIEDMEKA 101
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PDA L + +G+S +AL +A + L+ E T++E+ A F
Sbjct: 102 LPDAFFYLAGSLRAGVSFSEALEELAS---AKFGALTLEFRRTVSEIKRGRPTVEALRAF 158
Query: 243 YNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
R + + +T +I++ G + D L + ++ R ++ E+KA++ +
Sbjct: 159 ALRNKRSPVIYRSTMIIIEALERGAPMADVLVAVANDVREIIRIQKERKASTGMQMMFFL 218
Query: 302 MIIFFLPVLILVIIG 316
+ F+ I+ ++
Sbjct: 219 VSSGFVGPFIVAVVS 233
>gi|167748318|ref|ZP_02420445.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
gi|167652310|gb|EDR96439.1| hypothetical protein ANACAC_03062 [Anaerostipes caccae DSM 14662]
Length = 259
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 71/203 (34%), Gaps = 8/203 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L ++ Y F R+ IL F + R + + + L
Sbjct: 26 AVLKAAQGMILFFIICYLFYDRIWLGILYAVFCFPYMLYQAREERKMRIRQSRLEFKEML 85
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFY 243
+ + +G S++ A+R +D+ + L +E+ L A L +V +
Sbjct: 86 LSVYNSLSAGYSLENAVRAARDDMRAVNGDKKSVLEQELSLVCAGLEVNQPIEVLMDKMA 145
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R +D Q L R G ++ ++ V + ++ E + K I
Sbjct: 146 LRLGVDEASQFAQVLWIIKRNGGNLIQIIKKSVEHMNQKIQVKEEILTM-VSAKRMEQKI 204
Query: 304 IFFLPVLILV---IIGPAILSII 323
+ +P IL+ ++ P ++
Sbjct: 205 MSVMPFFILLYVRLMNPGYFQVL 227
>gi|46204164|ref|ZP_00050408.2| COG4965: Flp pilus assembly protein TadB [Magnetospirillum
magnetotacticum MS-1]
Length = 188
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 4/148 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+S L ++R ++ P+A+D+++ + SGI + LR ++ PL E + +
Sbjct: 1 MLSRLQKRRVAAFVEELPNAMDVIVRGLRSGIPLGDCLRMISR---EAKEPLRSEFRIAM 57
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A R + V + + G ++ ++L L R + M
Sbjct: 58 EAQALGLAMPDAILRMCERVPVTEVNFFAVVIGIQQKSGGNLSEALGNLSRVLRERKKMA 117
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ +A S+ K + +II LP + +
Sbjct: 118 GKIQAMSMEAKASA-VIIGALPFFVALA 144
>gi|331082850|ref|ZP_08331972.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400179|gb|EGG79828.1| hypothetical protein HMPREF0992_00896 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 389
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ +++G + + + ++R +PD + L++ + +G +I +A+ ++
Sbjct: 207 IICMLSLILGLGVYPLQKEKKKKQQELVRKEMQRDYPDIIQKLVLFLRAGFTIRKAMEKI 266
Query: 208 A-------EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A E + EE++ T E+ A+E F R + + + L+Q
Sbjct: 267 ADGYLRSREKYHEKERSAYEEIVRTCKEMQSGIYEAEAYERFGTRCGISQYKILSVLLVQ 326
Query: 261 SDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ + G ++ + L + ER A+ + KL +PM++ + VL++++I PA
Sbjct: 327 NLKKGNQNLLELLEREEAVAEDERKRSAKVRGEEASTKLLLPMVLQLIVVLMILMI-PAF 385
Query: 320 LSII 323
S +
Sbjct: 386 FSFL 389
>gi|218132582|ref|ZP_03461386.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
43243]
gi|217992308|gb|EEC58311.1| hypothetical protein BACPEC_00441 [Bacteroides pectinophilus ATCC
43243]
Length = 248
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 74/198 (37%), Gaps = 7/198 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + F VIL+ + + + L ++ + A+ D + +
Sbjct: 20 WLKSLFIPVAVGIIFYNSFLVVILLLPLCWVYVRIQKRELAKREDERLAGAFKDGIIAVS 79
Query: 192 ICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ G SI+ A R +++ +++E + ++ N + E+F + +
Sbjct: 80 FSLNVGYSIENAFREAYKEMQMLYGSESRIAKEFRIICNRMAQNENIEDILEDFAAESGV 139
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + Q + R G + +R S R + + + + G ++ M++ F+P
Sbjct: 140 EDILYFAQVFRYAKRSGGDLMSIIRNTASVIRDKNEVAEDIRTIISGRRM-EQMVMNFVP 198
Query: 309 VLILVII---GPAILSII 323
I+V + P + +
Sbjct: 199 FGIIVYLRLASPEFIEPL 216
>gi|257790637|ref|YP_003181243.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257474534|gb|ACV54854.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 296
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 69/186 (37%), Gaps = 5/186 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ L + +++L+ P +++ + + A+ L
Sbjct: 73 IVWAATATLPALTALALGVGPLSLLLLPVCAAGFP-LYLKVRRDSGKKKFEEQLGQAMPL 131
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G S+ QA+ VAE++ P+ E +++ A + +RT
Sbjct: 132 IASNLRAGSSVAQAIGPVAENMSD---PIKSEFRRLTSDIRAGTPVPEALDKVADRTGSR 188
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ S + G S+ D + R+ ++ + ++ +++ LPV
Sbjct: 189 DLRLFATAVDISQQTGGSLADITENVGQTVRARVEARKAIRSKTSLNRIESQIMVG-LPV 247
Query: 310 LILVII 315
++ +
Sbjct: 248 FMMAAL 253
>gi|239980168|ref|ZP_04702692.1| integral membrane protein [Streptomyces albus J1074]
gi|291452022|ref|ZP_06591412.1| integral membrane protein [Streptomyces albus J1074]
gi|291354971|gb|EFE81873.1| integral membrane protein [Streptomyces albus J1074]
Length = 307
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/313 (13%), Positives = 99/313 (31%), Gaps = 13/313 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + I++L+ A++ R+ ++ + T
Sbjct: 7 ILIGAVLGLGIYALVRALMPAKSSPVAQVARIDALRARGSAYSSGRGTGDSTG-----RL 61
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-I 132
+ V +L + ++ L + S L ++++ L G
Sbjct: 62 DTLRAKVGTRVAELYFQQGWEQRSLRADLA----VLDRSWEKFLATKVLLAGAGLFFGPF 117
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+++ + + V + V F P + + R+ ++R LDL+ +
Sbjct: 118 LFVIVWRLGFGSSPIIPVWMALAFALVFFFLPDLEVRRDAADRRRDLRRVIGAYLDLVSM 177
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G + +AL AE + L A + ++ A ++ ++
Sbjct: 178 SLAGGRGLPEALMAAAE-VSDGWAAKRIRNALNDARI-TGHSQWQALGELGEELGIEELK 235
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ +L G + +SL R + E E A + V + ++
Sbjct: 236 DLAASLALVADDGAKVRESLASRAETMRHREMAEIEGAAGEKSQSMLVAQ-LLLCAGFLV 294
Query: 313 VIIGPAILSIIDT 325
+I PA + +
Sbjct: 295 FLIFPAAMRVFQV 307
>gi|312882148|ref|ZP_07741897.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370194|gb|EFP97697.1| Flp pilus assembly protein TadB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 300
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 11/191 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L + W L+ L VG + + G+ +LV KR+ + +PD
Sbjct: 78 VVLSVAASWYIVITLLMIENKALVVGLSCVFIFAGY-------RSLVTKRRRDFENTFPD 130
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
AL++L+ V +G S+ QA+ V + + + E + V
Sbjct: 131 ALNILMSAVSAGDSLMQAIIYVGDVMDNA---IGREFKRMGDRFKLGESPDVILHRACKT 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + + G + L L+ R +E +K A + +++ ++
Sbjct: 188 YPYPEFLFFTVTIRANIARGGQLKGVLARLIRVLVESRTLEKKKMAMTSEARISAKIVAM 247
Query: 306 FLPVLILVIIG 316
PV+ ++++
Sbjct: 248 I-PVIFMLLLN 257
>gi|308234328|ref|ZP_07665065.1| Type II secretion system F domain protein [Atopobium vaginae DSM
15829]
Length = 144
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQ 236
+ P LD++ + + SG+S + +L + L++ + + +R+
Sbjct: 1 MCLQELPTLLDVITLGLSSGLSFEASLDLYCMHY---NGVLAQLFQRQLLQYRLGVISRR 57
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A ++ + +D + T +IQ+ G+ + L R + E E++ +
Sbjct: 58 AALQDIADDLHIDALTRFTSTVIQALECGSPLVGVLSDQAQSIRDAQRFELEEEIEKIPV 117
Query: 297 KLTVPMIIFFLPVLILVIIGP 317
K+ +PM + +P +++ I+GP
Sbjct: 118 KMLIPMGVLIVPAMLISIMGP 138
>gi|297157607|gb|ADI07319.1| putative integral membrane protein [Streptomyces bingchenggensis
BCW-1]
Length = 312
Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 30/296 (10%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
V++ + + + G + + A +E + S R R
Sbjct: 4 LAVVTVGATLVCGALGVAG-------VHTYARGKEAQQALFDRLSDTGSLPLSGRPRRFA 56
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ ++ L + +L + G + + V I +
Sbjct: 57 RVDRRLRSTRLGR-----KLELRLASTGL--DITPGEFFVYTAGAAIGLWAVAA------ 103
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L + V + +++ QKR P+ +L ++G+
Sbjct: 104 -------SLLAAFFGPIAAVVAVWSAFAFLNWQRQKRIEKFISQLPELSRILANATQAGL 156
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++ AL A+++ P EE+ +L+ + A R + L
Sbjct: 157 ALRTALGMAADEME---APAGEELAKVADKLAVGHSIDDALGELAERLPSRELVVLVTTL 213
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ S+R G ++ SLR L + E + +T ++ +L++
Sbjct: 214 VLSNRAGGTVVSSLRNLTQTLEERKETRREVRTQLSQVTVTAYVVPLMGIGTLLLM 269
>gi|217978830|ref|YP_002362977.1| type II secretion system protein [Methylocella silvestris BL2]
gi|217504206|gb|ACK51615.1| type II secretion system protein [Methylocella silvestris BL2]
Length = 319
Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/281 (13%), Positives = 102/281 (36%), Gaps = 11/281 (3%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
++A+ ++ + + + + + + + +L + V ++ G
Sbjct: 16 AMAIAVALVLSRNAAAQMSRRLNLVAADENRQLEADTLAELVKAQTKKFDAQVRRIFTLG 75
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+++ + +++ ++ + + P AV + + + P +
Sbjct: 76 IERTWAMQASSLTLVLLALVLAGGAWVLFHNVLGFSQLP------AVGISIFASYFGPRL 129
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ +K + +PDA+D + + +G+ I A+R +A + G P+S +
Sbjct: 130 VLVRRQRKTERQFMDLFPDAVDTVARMIRAGLPITAAVRTIASEAG---APISTVFAMIA 186
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
EL + + + + R A+ G ++ +L L R R +
Sbjct: 187 DELKIGVPIEQTLDASSKQIGLADFRFFAVAVALQYSTGGNLMATLEALSQIVRKRRALR 246
Query: 287 AEKKAASLGPKLTVPMIIFF--LPVLILVIIGPAILSIIDT 325
+ KAA+ ++T + L L ++ P L+ + T
Sbjct: 247 LKAKAATGEIRITAYALGGIPVLTSGALFVLQPGYLAPLWT 287
>gi|220918107|ref|YP_002493411.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955961|gb|ACL66345.1| type II secretion system protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 321
Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/310 (14%), Positives = 104/310 (33%), Gaps = 29/310 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A +AV+ +L+ + V ++E LR++ +A+
Sbjct: 4 MLAFLSAVAFVALLEGARQLYRFT---------VEKKKEELRRRLRAIADPVAAAEGTLL 54
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R + RN LK + + + A + +
Sbjct: 55 RAGRVARNPAVAAFLKRLPFTARLEQLIEQAD--------------SQFSVAQVSAWSAM 100
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ +L ++ +G L+ G P++ + +R + + P+ALD++ +
Sbjct: 101 LAAAGAVLAGWLRMGLGLGGLLSAAGLALPTLLLVVARDRRSNRLSEQLPEALDMMARSL 160
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRN 253
+G + A VA ++ P++ E + A R +R
Sbjct: 161 RAGHAFTSAFEVVATEM---PEPVAVEFARAFESQRLGLPVEQAIVQMTERAPGNRDLRI 217
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM--IIFFLPVLI 311
+ + G ++ + L + R+ ++ A + + + + ++ L L+
Sbjct: 218 FAVSALIQKETGGNLAEILGSIAETIRARYRFYSKLSALTAEGRASGAILGMLPILMALV 277
Query: 312 LVIIGPAILS 321
L I+ PA +
Sbjct: 278 LRIMNPAYMG 287
>gi|170704075|ref|ZP_02894707.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
gi|170131017|gb|EDS99712.1| type II secretion system protein [Burkholderia ambifaria IOP40-10]
Length = 325
Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 104/298 (34%), Gaps = 22/298 (7%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
A+ F +I + + L R + +R R +++ + T
Sbjct: 6 LFALGAFVVILVIGLML---SALLDRARQAPEQRIRERMRRLAPSLAGREAGANATPGVA 62
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
++ ++A L + + + + I+ I I+ +
Sbjct: 63 LFNLPRRQGRMRAWLQRYVTRVR--------AVGGERGMRIVIASAIVGEIAAIVAMKLV 114
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ VG +L + LV++ + A+PDA+DL++ V +GI
Sbjct: 115 ALPSILHPLIYVGLPLLAMRTSY-------RALVERFRLRFLEAFPDAIDLIVRAVRAGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ QA+ V + P+ L + + +R + T L
Sbjct: 168 PVTQAISTVG---DSAAEPVRSTFRTMGDSLRVGVDLKDVLTQASDRLMIADFSFFTVYL 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G S+G++L L S R+ R + + +A + ++T II +P +++ +
Sbjct: 225 LLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRVT-TKIISAVPFVMIGALF 281
>gi|160878195|ref|YP_001557163.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
gi|160426861|gb|ABX40424.1| hypothetical protein Cphy_0034 [Clostridium phytofermentans ISDg]
Length = 485
Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 84/223 (37%), Gaps = 28/223 (12%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ L + + + +++ V C P ++ Q ++ D
Sbjct: 262 MVTLPSVVLGDQVLWKPIKNNSSIPLLLIGILVMVCIPFFIEQKKREREQQKQEQLLLDY 321
Query: 187 LDLLL---ICVESGISIDQALRRVAEDIGG-----------------------QSVPLSE 220
++++ + + +G++ A R+ +D E
Sbjct: 322 PEIMMKYTLLLSAGMTTYGAWERIVKDYNTRRERELGGTRRNKKKLSKSKSMKSMRYAYE 381
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSET 279
EM++T E+ + VA+E F R ++ + ++Q+ + G + L +
Sbjct: 382 EMIITKNEIDLGVSESVAYERFGRRCKLLSYLRFSTIIVQNMKKGNKGMIPMLEAESVQA 441
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+R +A++ K+ +PM+ L ++I +++ PA++S+
Sbjct: 442 LLDRKEQAKRLGERASTKMLMPMM-GMLCIVIAILMVPAMMSM 483
>gi|325958171|ref|YP_004289637.1| type ii secretion system F domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329603|gb|ADZ08665.1| Type II secretion system F domain protein [Methanobacterium sp.
AL-21]
Length = 310
Score = 73.7 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/198 (17%), Positives = 81/198 (40%), Gaps = 11/198 (5%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ LI GII+ + ++ W+ +++R +I++ PD
Sbjct: 46 LMLIAGIIFGLIGLLSFSLIGITPILGFLVGFLTPSFIVLGWLFFSMERRVDAIEQTTPD 105
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + +G+ I+ AL +++ GG PL+ E+ + E+ + A + R
Sbjct: 106 FLRQISSLLRAGVGIETALEDISKQGGG---PLNAELKRAVIEIKIGSSFDEALLSMGER 162
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + +++ R G S+ D + + + R+ ++ E++A M+
Sbjct: 163 LKSKTLDRTFRMILEGKRVGGSLSDVIETVAEDLRAVLALKRERRAN--------VMMSV 214
Query: 306 FLPVLILVIIGPAILSII 323
++ +I P L +I
Sbjct: 215 MFLIISAIIAAPFALGMI 232
>gi|254524987|ref|ZP_05137042.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
gi|219722578|gb|EED41103.1| Flp pilus assembly protein TadB [Stenotrophomonas sp. SKA14]
Length = 318
Score = 73.7 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/300 (14%), Positives = 102/300 (34%), Gaps = 27/300 (9%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
+ +SI S++ A+ G+ ++ ++ E + T+ ++ + +
Sbjct: 5 LLLGVLSIISVLLALAAWLWGTASTREQRQASLQHAEQQLARGNTASSPSASIASAAANE 64
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ ++ L ++ AG + + L P++ L+ G++
Sbjct: 65 PARPASSGRRPLPWNGL--------MQRAGLQPGWKL----------PVMLLVPGVVLSL 106
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L + + ++ +WI + ++ + PD LD L+
Sbjct: 107 TAMLRLGTAWMFPLTLLLYALGC-----WLWIMRRTTRLRAQLLHQLPDFLDNLVRLTAL 161
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+ A + + S PL + T+ + A +MD ++ +
Sbjct: 162 GNSLQAAFQVASMQ---TSAPLRGLLDTTVRYARSGMDLDRALSLAAQPYRMDVLKVLSV 218
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ S R G L+ + R + E A + +++ ++ LP V++
Sbjct: 219 VIGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSETRMSA-WVLGLLPPASAVLMA 277
>gi|291459839|ref|ZP_06599229.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417629|gb|EFE91348.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 285
Score = 73.7 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 6/208 (2%)
Query: 113 LNILLVVRLVVPIIFLILGI--IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
L L L+ + L+ V +++ G A S+
Sbjct: 37 LRTFLAALLLGGGVSLVFYGNQFLDSSGRPTGATATGNVVIFLVVGSIAGIFAQSIRSKM 96
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS---VPLSEEMLLTIA 227
L +KR + + + L+ L + + SG++++ +L+ V +D+ + + +E I+
Sbjct: 97 LQKKRITELSIQFRGFLEALAVALSSGMNMNDSLQSVYKDLVLEYTRDSWIVKETEEMIS 156
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + + R+ +RN S R G +I D +R + +
Sbjct: 157 GMRNNIPIEDMIRSLGERSDNRDIRNFATVFNVSYRAGGNIRDIVRRTADIIGEKIEISG 216
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
E A KL ++ PV +++++
Sbjct: 217 EIATAISSNKLQFNAMMVI-PVFLILML 243
>gi|33867075|ref|NP_898633.1| hypothetical protein PBD2.018 [Rhodococcus erythropolis]
gi|33668909|gb|AAP73903.1| conserved hypothetical protein [Rhodococcus erythropolis]
Length = 300
Score = 73.7 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/310 (12%), Positives = 98/310 (31%), Gaps = 15/310 (4%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ I A+ L ++ L + + V R + D +R
Sbjct: 1 MTFQIQAALLAIVLCVGLICLFLRFAPAQASLSDVLDNLGAHRSNEAPDEAFD--DDSIR 58
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-I 132
+ L + + I + + K+ + L +++ ++ L+
Sbjct: 59 GKVGTRLLPYTTDSTILRIPRSDLAILKI---------GIPYFLGDKVLSALVGLLFFPA 109
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + P+ + I + V F P + + + R+ ++ + +
Sbjct: 110 LNLMLTALGHGLPWGIPTILSIAVAGVLFITPDIDVRKKAAAAREEFSRSLGAYIEFVAL 169
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
G+ Q+L R A G S + ++ +
Sbjct: 170 NRTGGVGAVQSLERAAAV--GDSWVFRRLDEELMRAQRSGQAPWDTLTRISGELELPDLA 227
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + + G S+ +L S R+ +L + KA S K+ P+ + + + +
Sbjct: 228 DLADIMTLTGEQGASVAVTLSARASALRNAQLSDELGKAGSATEKIQAPLAVLGI-IFMA 286
Query: 313 VIIGPAILSI 322
++ PA+ +I
Sbjct: 287 MLFIPALSNI 296
>gi|290559840|gb|EFD93163.1| type II secretion system protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 298
Score = 73.7 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 89/234 (38%), Gaps = 8/234 (3%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
KKL + + +L A +Y I + + + ++ L+ G+ +
Sbjct: 17 FFGKKFKKLAFNFKGIVPTLKQELIQASMSIDYLDYIAAGIVVALVLVGLMAGVSGLIIL 76
Query: 139 DKLLEYPFQLRV-----GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + +++ + ++ V F + KR I+ A+ ++I
Sbjct: 77 IAIKKNLLTIKIEAILPVLIFVVPAVYFFYFLNFPKLQAVKRTKLIEEQVVFAIREIMIK 136
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V SG+ I AL VA G +S+E L + E+ + A ++ R +R
Sbjct: 137 VGSGVPIFNALLDVAN---GNYGIISDEFKLAVEEIESGVPQNDALDHLARRVPSQSLRR 193
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
A ++ + + G+ I +L ++ ++ + + A L P M+I +
Sbjct: 194 AIDIILNAIKSGSDIAGTLELINDMLIKKQQSDMKSYAGELTPMSMAYMLISVV 247
>gi|289706420|ref|ZP_06502778.1| type II secretion system F domain protein [Micrococcus luteus SK58]
gi|289556915|gb|EFD50248.1| type II secretion system F domain protein [Micrococcus luteus SK58]
Length = 285
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 5/192 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ + L+ G P + +S ++R ++++ WPD
Sbjct: 52 AGVVSAMAVGGLVVGLIVLSLTGTWTIAACFAVFGAAVPWLLLSWQARRRSTALRELWPD 111
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+D + +G+++ +AL ++ E L E + A + R
Sbjct: 112 AIDHARSAIRAGLTLPEALIQLGETGPEG---LREPFQHFARDYRAGARFVDALDRLKAR 168
Query: 246 TQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+L + G IG L+ L R + + AE +A + +
Sbjct: 169 MADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAELEARQSWTVNAARLAV 228
Query: 305 FFLPVLILVIIG 316
P L+L+++G
Sbjct: 229 CA-PWLVLLLLG 239
>gi|50841725|ref|YP_054952.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
gi|50839327|gb|AAT81994.1| hypothetical protein PPA0232 [Propionibacterium acnes KPA171202]
Length = 236
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 6/194 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G++ + +PF G +L+G V + S+ ++ + P+AL
Sbjct: 44 LAGLVAACAVLIGVPWPFPAAAGLSVLVGTVMWWGSGRLESSGHRRMEQHRAAQLPEALL 103
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 104 MLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLA---SV 157
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R+ Q + ++ G I + L ++ + + EKKA G P++ LP
Sbjct: 158 EVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGVDAIGPLVCCHLP 217
Query: 309 VLILVIIGPAILSI 322
+LV + P I +
Sbjct: 218 AFLLVGVVPIIAGM 231
>gi|149927030|ref|ZP_01915288.1| type II secretion system protein [Limnobacter sp. MED105]
gi|149824251|gb|EDM83471.1| type II secretion system protein [Limnobacter sp. MED105]
Length = 302
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 21/278 (7%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+++ +L + +K + S ++K L+ + + I + L +AG
Sbjct: 13 ISLALLLLGRGAEEQNRKLAESRLDVALSKSRDPLALEKDPLRKKYIPQWITDSLISAGL 72
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + L +R+ + + L G +G +
Sbjct: 73 TIDRT----LGIRVAMFTLIPALAAFVFRGAASAAGALILAILGIAA------------Y 116
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ +KR+ + P+ LD ++ G S+ + + PL E + L +
Sbjct: 117 VLYRQRKRRLQMLGQLPNFLDGVVRVSAVGYSLTVSFNTA---LENAEQPLKEALGLAVQ 173
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
A + + + + YG L L R
Sbjct: 174 MQYAGLELDQAMHRLARVYGLSEFKLIASVVALALNYGGKSDILLGRLAQYLRDREQHHQ 233
Query: 288 EKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAILSII 323
E A S +++ + P L I++ + PA L +
Sbjct: 234 EMLAMSSEARMSAVFMCCLTPALAGIILTLNPAYLGTM 271
>gi|11498600|ref|NP_069828.1| hypothetical protein AF0995 [Archaeoglobus fulgidus DSM 4304]
gi|2649600|gb|AAB90246.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 651
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/322 (15%), Positives = 112/322 (34%), Gaps = 10/322 (3%)
Query: 4 YFFDLFDATELAVAITTAVSIFSLI--YAVVIPSLGSGELEKRMKSVAVEREILRKQQIT 61
Y + I T +S+ A+ + M ++ ++ ++
Sbjct: 259 YITAFVAGPLFLIIIQTVMSVMGQTNEVAMFSIIYFVIPIGSFMFAMLIKLLTPGEEGSA 318
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
++ R+ + S + + ++ KL+ + +
Sbjct: 319 PRLRERYIYVRRSSELDSEEKKKLEKKVSRY----KLMKKLKNPFRLIVENPLYTFAFSI 374
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
++ LI G++ + + I I + P L ++ + R
Sbjct: 375 PAALVILIYGLVVNPYIPGMDLKNWFFSYDDYIFISLMVVLGPFALFYELGRRGVKTYMR 434
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P L L ESG+ I +A+ +A+ + PL +E+ A+L + + A
Sbjct: 435 LTPIFLSKLASANESGMPIYRAITMIAK---TDTSPLRKEIAKIKADLDWGISLSDALVR 491
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F NR ++ + L ++ + ++ + L + + S L+ E+ + + +
Sbjct: 492 FANRLKIFEISRTMTLLNEALKSTGNVTEVLMISAKDATSAELLRRERMTN-MFMYVIIV 550
Query: 302 MIIFFLPVLILVIIGPAILSII 323
I FF+ + I+ II LS +
Sbjct: 551 YIAFFVFIGIVYIISSTFLSTL 572
Score = 59.0 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 92/269 (34%), Gaps = 29/269 (10%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAA--GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ +K + L+ A E + + L+ II ++G+I F
Sbjct: 14 RLFAEDIMKKESKYFELERSLKKAMISMPPEMYIATARMFSLLFGIIGAVIGLIAAFILV 73
Query: 140 KLLEYPF------------------------QLRVGAVILIGYVGFCAPSVWISNLVQKR 175
K + P L +G + + Y+G +++ S ++ R
Sbjct: 74 KYVGVPPFFNIRLPEPIATYWLFYRPFVYAGILAIGITLALYYLGNLIFAIYPSTVISDR 133
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPN 234
+S I R P A+ + + G+S+ Q L+ +A++ +S+E + E+ +
Sbjct: 134 KSKINRILPHAIIFMYSLSKGGMSLVQILKALADN-HEVYGEVSKEASRILWEVEGLGKD 192
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A + T D + LI G I + + L
Sbjct: 193 LRTALAEAVDTTPSDNFKEFLHGLITIIDSGGDITRYFEERAEFYFERARQDQKSFLEFL 252
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSII 323
G + F L L+II ++S++
Sbjct: 253 GLMAETYITAFVAGPLFLIIIQ-TVMSVM 280
>gi|153812902|ref|ZP_01965570.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
gi|149830980|gb|EDM86070.1| hypothetical protein RUMOBE_03309 [Ruminococcus obeum ATCC 29174]
Length = 289
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 5/190 (2%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
L I + +F +L + + VI V + + + +
Sbjct: 84 AEYYYYILQGAKITYAYTVFLVFMLLSVLAGSVEAALLGVIFSVLVVMYI-DLSLQDKLT 142
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R+ I P L L + V SG+ + A +R A L +EM T E+
Sbjct: 143 ARRQEILMDLPQVLSKLTLLVNSGMVLRDAWKRTAITGERA---LYKEMQNTSLEIDNGI 199
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAA 292
A+ NF +R + VR T ++Q+ + G + L + +E + E ++K
Sbjct: 200 MEADAYRNFADRCSVKEVRKFTSLILQNLQKGNEELALFLGDMSTEMWEMKKNEVKQKGE 259
Query: 293 SLGPKLTVPM 302
+L +P+
Sbjct: 260 KANSRLLLPV 269
>gi|168699470|ref|ZP_02731747.1| hypothetical protein GobsU_08112 [Gemmata obscuriglobus UQM 2246]
Length = 330
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/310 (13%), Positives = 98/310 (31%), Gaps = 26/310 (8%)
Query: 14 LAVAITTAVSI-FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ------KD 66
+ I V++ + + + + S G R + E
Sbjct: 1 MIAQIGVFVAVTGAALMVLWVASASRGPARARFRRRLDEEFAGEATGPGGPALLYKNLDA 60
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
++ + + A +LR AG + L+ +
Sbjct: 61 LSALDPNASLPPADPQVPRPAARPARRRRFWAEEQLRRAGVP--LTPRQFLIASAGLGAG 118
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
LG +++ L P+V + +++R+ R A
Sbjct: 119 AGGLGAVFVSPLAGAAAALVGLVA-------------PTVLVRLRLKRRREKYLRQIAGA 165
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+L+ + +G S+ +A R PL+EE + ++ + AF +R
Sbjct: 166 FELMARVIRTGQSVTEAFRAAVGAFDD---PLAEEFGRCVHQIEHGIRPEAAFREMSDRA 222
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ +R A+ + G ++ + L L R+ + + +A + ++ +
Sbjct: 223 DVLELRIFVVAMTIQRQTGGNLSEVLDRLAGVVRARLRVRQKIRALTAEGRMQSRT-LTV 281
Query: 307 LPVLILVIIG 316
LPV++ ++
Sbjct: 282 LPVVVFAMMY 291
>gi|148974881|ref|ZP_01811861.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
gi|145965390|gb|EDK30639.1| Flp pilus assembly protein TadB [Vibrionales bacterium SWAT-3]
Length = 304
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 4/187 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ + + F LR + + V+ + L Q++ K +PDAL+
Sbjct: 79 LILFVCVSASAVYAINEFFLRQDYPVCLMIAEPILFFVFYNKLKQRQMDRFKTNFPDALN 138
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L + SG SI A V + + + +E L E N
Sbjct: 139 ILSGAISSGQSIIHAFEYVGKQLDN---EVGKEFKFMAERLLIGEAPDDVLERSSNTFPY 195
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + G + D + + R +E +K A + + + +I LP
Sbjct: 196 LEYFFFASTIRINLARGGQLKDVINKINRLMFDSRAVEKKKNALTSEARASAKIIAC-LP 254
Query: 309 VLILVII 315
V+ L+I+
Sbjct: 255 VIFLIIL 261
>gi|22127362|ref|NP_670785.1| hypothetical protein y3488 [Yersinia pestis KIM 10]
gi|21960447|gb|AAM87036.1|AE013952_3 hypothetical [Yersinia pestis KIM 10]
Length = 270
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 4/164 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 82 LQLKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLI 138
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L+ + F + Y R ++ + + G + + + L ++
Sbjct: 139 CRRLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTT 198
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E +K + +++V II +P+L ++ + I+ + H
Sbjct: 199 EQKKAVMTAQIRMSV-NIISIMPMLFSFLLYLLDPTTIEFVWQH 241
>gi|153950598|ref|YP_001399591.1| type II secretion system protein F domain [Yersinia
pseudotuberculosis IP 31758]
gi|152962093|gb|ABS49554.1| type II secretion system protein F domain protein [Yersinia
pseudotuberculosis IP 31758]
Length = 291
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 4/164 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 103 LQLKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLI 159
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L+ + F + Y R ++ + + G + + + L ++
Sbjct: 160 CRRLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTT 219
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E +K + +++V II +P+L ++ + I+ + H
Sbjct: 220 EQKKAVMTAQIRMSV-NIISIMPILFSFLLYLLDPTTIEFVWQH 262
>gi|310830507|ref|YP_003965608.1| hypothetical protein PPSC2_p0147 [Paenibacillus polymyxa SC2]
gi|309249974|gb|ADO59540.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 313
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 87/288 (30%), Gaps = 29/288 (10%)
Query: 27 LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK 86
L++A+ + L + K ++ S + + + +
Sbjct: 6 LMFAITLFFFIGSSLFT----------MRGKNNFEKRKEQSKNLLRENVLKQRIEQIAE- 54
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
I AGF Y+ L++ + +I I +
Sbjct: 55 -GRVRYSKRYAIETLCMQAGFPLTYA--EYLMISVASALIVAIFVGMV------------ 99
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
I+ VG+ P +I+ +R +++ + +++ E+ +AL
Sbjct: 100 MNNPILGIIFLIVGYMIPKQFITLRKNRRVVMMEKQIGSFMHMVIKRYETTREFSKALEL 159
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ G+ PL E+ T+ +++ + + RT + + + GT
Sbjct: 160 STIEFKGE-EPLYTELRKTVLDINLGKPVTDSMDALARRTGNKYLARFSDYYKIASSIGT 218
Query: 267 S--IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + R+ + K +++ +P+ +
Sbjct: 219 DEIRKKLLEQAYKQFEENRVNKQTTKKELATVVREAYIMLGSIPMFAI 266
>gi|302558696|ref|ZP_07311038.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476314|gb|EFL39407.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 314
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 3/175 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ L L + G +G A +++ QKR P+
Sbjct: 89 FFACMTATVAGLWLVGQATLAPFFGPIAGLLGIGAALQFLNWQRQKRIERFINQLPELAR 148
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++G+++ A+ AE++ P EE+ +L+ + A +R
Sbjct: 149 ILANATQAGLALRTAVGMAAEEME---APAGEELAKVANQLAVGASMDDALGELADRLPS 205
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ S+R G + +LR L + E + +T +
Sbjct: 206 RELVVLVTTLVLSNRAGGQVVSALRNLTETLEERKETRREVRTQLSQVSMTSYAV 260
>gi|302669442|ref|YP_003829402.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
gi|302393915|gb|ADL32820.1| Flp pilus assembly protein TadC [Butyrivibrio proteoclasticus B316]
Length = 486
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 67/158 (42%), Gaps = 7/158 (4%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ +++ G F ++ ++KR + + +P + +++ + +G+++ + +
Sbjct: 305 ITLLFILLIAGAASFVLKDKELAKQIEKRNEGLLKDYPGLVSQMVLYLGAGMTMRNIIGK 364
Query: 207 VAEDI------GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
++E+ G + EE+L T EL+ + A+E F R + L Q
Sbjct: 365 LSENYVAKLKAGQEKSFAYEELLRTTRELAAGKSESDAYEEFGYRCGGQQYTRLSTLLSQ 424
Query: 261 SDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ R G S + L +++ +RL A K G K
Sbjct: 425 NLRKGNSELLRLLNEEARKSQEDRLDRARKAGEEAGTK 462
>gi|302542848|ref|ZP_07295190.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302460466|gb|EFL23559.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 312
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/319 (14%), Positives = 95/319 (29%), Gaps = 39/319 (12%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
D + TT V + V + G+ R +++ + A
Sbjct: 1 MDRLAMLTLGTTLVCGALGVAGVHTYARGTD----RQRALIDRLSESGAAAPAGRSRRFA 56
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R R + R + +L A G + + +
Sbjct: 57 RVDRRLRTTSLGRR---------------LELRLAATGLDITPGEFFVYTAAAAAGLWAV 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ F + + + +++ QKR P+
Sbjct: 102 AASLLASFF---------------GPIAAVIAVWSAFGYLNWQRQKRIERFINQLPELSR 146
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++G+++ AL A+++ P EE+ A+L+ + A R
Sbjct: 147 ILANATQAGLALRTALSMAADEME---APAGEELSKVSAKLAVGHSVDDALGELAERLPS 203
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ L+ S+R G ++ SLR L + E + +T ++
Sbjct: 204 RELVVLVTTLVLSNRAGGTVVSSLRNLTHTLEERKETRREVRTQLSQVTVTAYVVPLMGI 263
Query: 309 VLILVI--IGPAILSIIDT 325
+L++ I P L +
Sbjct: 264 GTLLLMNRISPGSLDRMTA 282
>gi|255281814|ref|ZP_05346369.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267487|gb|EET60692.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 245
Score = 72.9 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 11/180 (6%)
Query: 154 ILIGYVGFCAPSVWISNLV----QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++ + +++ +KRQ + + + + + + +G S++ A
Sbjct: 35 LIAFILCLPLFKMFLKIRRESCMKKRQRELSAQFLAGMQSVSVALSAGCSVENAFGEALR 94
Query: 210 DIGGQS---VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
++ + E + +L + + R+ ++ +RN + R G
Sbjct: 95 ELRQLYEEDAMIVREFRYIVVQLGMNRSLEQLLTGLAVRSGIEDIRNFADIFSAAKRTGG 154
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV---IIGPAILSII 323
++ +R V + E L K I+ +P +ILV ++ P L ++
Sbjct: 155 NLIAIIRNTVQCISQKEETRREINT-CLSAKRLEQNIMSIVPCMILVYVQMVSPGFLDVM 213
>gi|221197784|ref|ZP_03570830.1| type II secretion system protein [Burkholderia multivorans CGD2M]
gi|221204658|ref|ZP_03577675.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221175515|gb|EEE07945.1| type II secretion system protein [Burkholderia multivorans CGD2]
gi|221181716|gb|EEE14117.1| type II secretion system protein [Burkholderia multivorans CGD2M]
Length = 337
Score = 72.9 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/311 (14%), Positives = 84/311 (27%), Gaps = 7/311 (2%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V F+++ L R+++ A R + +A
Sbjct: 1 MYSAMLWVLAFAMLCVASGLMLWRYAETHRVRTDAKRFMDSRLEPGARAAAPAARPAASG 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S A G+ L R + +
Sbjct: 61 PAGASGAPRGTPQPAGARGGPAPGTFWSH--GYAVAVDYLTHLASRAGIADARGKALVAL 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ A + G VW+++ +Q+R+ I R P LD ++ V
Sbjct: 119 AALGALAAIAASRGGPLACLAALACGISVFGVWLASRIQRRRLKIVRQIPSFLDGIVRLV 178
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+ A + + PL + L A + + +
Sbjct: 179 TLGNSVPAAFQAA---LLTTEEPLRGCLDHVSRMLRGGVEIDRAMLHIAKIYRTEEFELV 235
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV--PMIIFFLPVLIL 312
L S +YG L + R E E A S +L+ +++ +
Sbjct: 236 GSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLPIAIASFV 295
Query: 313 VIIGPAILSII 323
++ P L +
Sbjct: 296 IMTNPQYLHGM 306
>gi|21223383|ref|NP_629162.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|8218172|emb|CAB92603.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 316
Score = 72.9 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 3/175 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ L L L G +G +++ QKR P+
Sbjct: 91 FFAYMLATVAGLWLIGQAALAPFFGPLAGLLGIGVAIQFLNWQRQKRIEKFINQLPELAR 150
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++G+++ A+ AE++ P EE+ +L+ + A R
Sbjct: 151 ILANATQAGLALRTAIGMAAEELE---APAGEELGKVADQLAIGASMDDALGELAGRLPS 207
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ S+R G + +LR L + E + +T +
Sbjct: 208 RELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQVTMTSYAV 262
>gi|221213136|ref|ZP_03586112.1| type II secretion system protein [Burkholderia multivorans CGD1]
gi|221167349|gb|EED99819.1| type II secretion system protein [Burkholderia multivorans CGD1]
Length = 337
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/311 (14%), Positives = 84/311 (27%), Gaps = 7/311 (2%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+ V F+++ L R+++ A R + +A
Sbjct: 1 MYSAMLWVLAFAMLCVASGLMLWRYAETHRVRTDAKRFMDSRLEPGARAAAPAARPAASG 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
S A G+ L R + +
Sbjct: 61 PAGASGAPRGTPQPAGARGGPAPGTFWSH--GYAVAADYLTHLASRAGIADARGKALVAL 118
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ A + G VW+++ +Q+R+ I R P LD ++ V
Sbjct: 119 AALVALAAIAASRGGPLACLAALACGISVFGVWLASRIQRRRLKIVRQIPSFLDGIVRLV 178
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+ A + + PL + L A + + +
Sbjct: 179 TLGNSVPAAFQAA---LLTTEEPLRGCLDHVSRMLRGGVEIDRAMLHIAKIYRTEEFELV 235
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV--PMIIFFLPVLIL 312
L S +YG L + R E E A S +L+ +++ +
Sbjct: 236 GSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLPIAIASFV 295
Query: 313 VIIGPAILSII 323
++ P L +
Sbjct: 296 IMTNPQYLHGM 306
>gi|148261009|ref|YP_001235136.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|326404409|ref|YP_004284491.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
gi|146402690|gb|ABQ31217.1| type II secretion system protein [Acidiphilium cryptum JF-5]
gi|325051271|dbj|BAJ81609.1| putative type II secretion system protein [Acidiphilium multivorum
AIU301]
Length = 319
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 48/320 (15%), Positives = 112/320 (35%), Gaps = 35/320 (10%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ +AV +L+ + + + + ++K + + R + ++
Sbjct: 1 MTGLLSLILPLSAVMASALVL-LGLNFVRADRMQKALDARLARVSGRRLVVSSQDAAAAS 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R R + + ++L + + ++ + I +L
Sbjct: 60 DPLARFRRPLNSALLLLGVDLVRAPD------------YPMPWWAIVIAAAVISRGIAYL 107
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +I G+ A + +R +++ +PDAL
Sbjct: 108 VGALIPGLGWIVWPPLFLLASRLAFGAV---------------HARRATALLNQFPDALA 152
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ CV GI + +ALR V++D+ P S E +++ ++A +R +
Sbjct: 153 TIVRCVRVGIPVQEALRVVSQDM---PAPTSREFGRIADQVAIGTPLELALRQMADRAHL 209
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A+ RYG + +L L R M+A A + + + +I+ +P
Sbjct: 210 AEYGFFATAISLQARYGGGLAQTLEGLAEVIRKRVAMKARGYALASEARTSA-LILGIIP 268
Query: 309 VLILV---IIGPAILSIIDT 325
++ + +I PA L ++
Sbjct: 269 LVAALAIEVIQPAYLRVLFV 288
>gi|269958190|ref|YP_003327978.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269306871|gb|ACZ32420.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 303
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/294 (13%), Positives = 94/294 (31%), Gaps = 13/294 (4%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
+ + + V + + +SA++ + + +++L
Sbjct: 19 IALLVWRLTPARPDLADVIHRYSP--EGVRGRIATESATTSVTNSTERLGVWALRRLPAS 76
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG-YDKLLEYPFQLR 149
L L+ ++V ++ L++ I + P +
Sbjct: 77 WWGKTPTKELALLR------IPLHRHYGSKVVFALLGLLIPPILGYACSVAGFPLPVLIP 130
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
I + + P + + +K + RA DL+ + G QA+ AE
Sbjct: 131 TAGSIALAVGLWFLPDYNVRDDARKARVEFGRALGAYTDLVALERLGGSGTRQAMELAAE 190
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G + A + + + + + S G+ +
Sbjct: 191 V--GDNWVFRRLSEELARSRWSGLAPWDAMHVLADELGLPELDDLADIMRLSKE-GSQVY 247
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
LR RS L A K+ + G ++T+PM + + L+++I P++L ++
Sbjct: 248 AQLRARSEGLRSAMLNAALGKSNAAGERMTIPMALLSIMFLVILI-TPSLLRLM 300
>gi|171320622|ref|ZP_02909642.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171094135|gb|EDT39222.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 325
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/298 (15%), Positives = 102/298 (34%), Gaps = 22/298 (7%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
A+ F +I + L R + +R R ++ +
Sbjct: 6 LFALGAFVVILGAGVVL---SALLDRARQAPEQRIRERMWRLAPSLAGREAGAAAAPGVA 62
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
++ ++A L + + + + I+ I I+ +
Sbjct: 63 LFNLPRRQGRVRAWLQRYVTRVR--------AVGGERGMRIVVASAIVGAIAAIVAMRLV 114
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ VG +L + LV++ + A+PDA+DL++ V +GI
Sbjct: 115 ALPGVLHPVIYVGLPLLAMRASY-------RALVERFRLRFLEAFPDAIDLIVRAVRAGI 167
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ QA+ V + P+ L + + + +R + T L
Sbjct: 168 PVTQAISTVG---DSAAEPVRSTFRTMGDSLRVGADLKDVLTHASDRLMIADFSFFTVYL 224
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G S+G++L L S R+ R + + +A + ++T II +P +++ +
Sbjct: 225 LLQRETGGSLGETLDELSSIIRTRRDIRLKTRALTAEGRIT-TKIISAVPFVMIGALF 281
>gi|170732850|ref|YP_001764797.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
gi|169816092|gb|ACA90675.1| type II secretion system protein [Burkholderia cenocepacia MC0-3]
Length = 326
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 91/312 (29%), Gaps = 23/312 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + ++ +++ + + + + + + D+ ++R
Sbjct: 4 ATLLALMFALICAAAGLLLWRGSQVREGRAHAQRFFDSRVGQGARPAASAGDTRTARAPA 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + + AG + L +
Sbjct: 64 AGTANPQEPEQGFARWRASAFNAWTVLSDRAGLDEVRA----------------GLVLSL 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L V A G +WI++ + +R+ I R P LD ++ V
Sbjct: 108 AIVVLLALWAGMAGGVLAAAAALVAGSVLVVLWITSRISRRRLKIVRQLPSFLDGIVRLV 167
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+ A + + +PL + L + A + + ++
Sbjct: 168 TLGNSVPAAFQ---SALQTAEMPLRRCLDDVSRMLRSGVDIDRAMLHIAHTYRIREFELV 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---I 311
L S RYG L + + R E E A S +L+ ++ LP+
Sbjct: 225 GAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSAETRLSA-WVLALLPIAVGSF 283
Query: 312 LVIIGPAILSII 323
++ P + +
Sbjct: 284 VIATSPRYFTAM 295
>gi|33600814|ref|NP_888374.1| hypothetical protein BB1829 [Bordetella bronchiseptica RB50]
gi|33568414|emb|CAE32326.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 308
Score = 72.5 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 76/263 (28%), Gaps = 20/263 (7%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
R + +L R + + + + + L AG
Sbjct: 24 RQARDGARRQASEAFLERQLELRPGQPEASQAPAARRRLPISNGAWRQLLLRAGV---EP 80
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + + L ++ + +
Sbjct: 81 TPRFLAASVGAHVGVPALAWLFGGWISAAAALLLVALLW-------------YFHLWLKA 127
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+R+ + P LD L+ + G S++ A + +G PL E + +++
Sbjct: 128 DRRRRRMVHQLPTFLDALVRLITIGNSVNAAFQ---NALGSVEQPLLEVLQRADSQVRSG 184
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + Q+ + + + + R+G L + + R E A
Sbjct: 185 KDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTAL 244
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
S +L+ I+ LP+ + + I
Sbjct: 245 SAEVRLSA-WILALLPIGLALFI 266
>gi|256785514|ref|ZP_05523945.1| integral membrane protein [Streptomyces lividans TK24]
gi|289769410|ref|ZP_06528788.1| integral membrane protein [Streptomyces lividans TK24]
gi|289699609|gb|EFD67038.1| integral membrane protein [Streptomyces lividans TK24]
Length = 316
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 3/175 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ L L L G +G +++ QKR P+
Sbjct: 91 FFAYMLATVAGLWLIGQAALAPFFGPLAGLLGIGVAIQFLNWQRQKRIEKFINQLPELAR 150
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++G+++ A+ AE++ P EE+ +L+ + A R
Sbjct: 151 ILANATQAGLALRTAIGMAAEELE---APAGEELGKVADQLAIGASMDDALGELAGRLPS 207
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ S+R G + +LR L + E + +T +
Sbjct: 208 RELVVLVTTLVLSNRAGGQVVGALRNLTETLEERKETRREVRTQLSQVTMTSYAV 262
>gi|54309664|ref|YP_130684.1| Flp pilus assembly protein TadB [Photobacterium profundum SS9]
gi|46914102|emb|CAG20882.1| hypothetical Flp pilus assembly protein TadB [Photobacterium
profundum SS9]
Length = 302
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 75/205 (36%), Gaps = 7/205 (3%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ ++ + + + ++ G +L+ +GF W+
Sbjct: 63 APAFAMLGDKAWLKLAIFMMLLTAVGVYINNSLLLLNSYWLPLLMPTLGFFWGWAWL--- 119
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++KR+ ++ +PDAL++++ V +G SI Q++ V + + + + L
Sbjct: 120 LKKRRDEFEQTFPDALNIMMSAVTAGESIMQSISYVGKTLDNKVGAV---FQDMGERLKL 176
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ F+ + + G + + L+ R ++ +K A
Sbjct: 177 GEPPEQVFKRASKHYPYPTFLFFVVTIRANMSRGGQLKPVMARLIRVLVDSRTLDKKKSA 236
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIG 316
+ +L+ I+ LP + +V +
Sbjct: 237 MTSEARLSAK-IVASLPFIFMVFLS 260
>gi|33152382|ref|NP_873735.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
gi|21326711|gb|AAL92471.1| TadB [Haemophilus ducreyi]
gi|33148605|gb|AAP96124.1| tight adherence protein B [Haemophilus ducreyi 35000HP]
Length = 295
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 9/178 (5%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + L+ + Q + A ++ + ++ + +P+ +
Sbjct: 75 FAIFVGLYHANAALIRFDNQSFMIAELIGFV------MLVWKMGQRRNKKMFDETFPEVI 128
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+L SG+S+ QA+ R +DI G PL +E L L+ + F++ Y+R
Sbjct: 129 QILNAATSSGVSLLQAMERCGKDIRG---PLGQEFTLIYKRLARGEDAMAVFQDSYSRYP 185
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + G I + + L ME +KKA + +++V ++
Sbjct: 186 YKSFYFFICIIRTNLSRGGQIREVVSRLGRAIADANKMEQKKKAMTAEARMSVMIVAC 243
>gi|312136915|ref|YP_004004252.1| type ii secretion system f domain protein [Methanothermus fervidus
DSM 2088]
gi|311224634|gb|ADP77490.1| Type II secretion system F domain protein [Methanothermus fervidus
DSM 2088]
Length = 339
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 93/243 (38%), Gaps = 14/243 (5%)
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ L +F+ K K +L+ + L G + S + IL I
Sbjct: 4 EKSLSPLASFLNKFVPKKLLLH--VQESLVRCGIYMKAS---------YFLSLLFILSAI 52
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L + AV+ F A + + ++R+ +I+ + PD L L
Sbjct: 53 SAVVATMLAIILNFNIILAVLAGILAPFAAAFAALYIIAERRRGTIEESTPDFLTQLASE 112
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +GIS++ A+ + + G PL +E+ T E+ + + + NR + + +
Sbjct: 113 LRAGISLESAIDDLTKYGEG---PLYDELKRTAIEIKMGRSFESSLIAMANRLKSEQLNR 169
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + + R G S+ L + + R ++ E+K+ + + + L++
Sbjct: 170 TFRMISEGRRAGASLSRVLESVAEDLRQVLALKRERKSNVMMYAMFFLIAGLIGAPLVVG 229
Query: 314 IIG 316
+I
Sbjct: 230 LIS 232
>gi|317124420|ref|YP_004098532.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315588508|gb|ADU47805.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 291
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 23/228 (10%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + E++ + LR AG+ + N+ ++G + +F LL
Sbjct: 35 RRSGLVEDLRDHLRQAGYPTVTPTNV-------------LVGSVVLFVLAFLLFMLLTAV 81
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V + G + +P I +KR+ ++ WPDA+D + V +G+++ +AL A+
Sbjct: 82 VPIALCFGAIAAASPISLIRMRARKRRGKLRDLWPDAVDNITSGVRAGLALPEAL---AQ 138
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SI 268
L + + + ++L + G +
Sbjct: 139 LAVRGPEELRPPFARFAEDYRATGRFHDCLDRLKDAMSDPVADRLIESLRIAREVGGSDL 198
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGP------KLTVPMIIFFLPVL 310
G LR L + R + AE +A + P ++ + L
Sbjct: 199 GRLLRTLSAFLREDARTRAELEARQSWTINAARLAVAAPWVVLAMLAL 246
>gi|283778865|ref|YP_003369620.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437318|gb|ADB15760.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 300
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 5/174 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ +G P V++S L R ++++ P AL + V SG ++ +A + V++
Sbjct: 96 LLGAAGGLILGITLPIVYLSVLRWWRVGTMQKQMPQALQAVADAVRSGQTLSEACQLVSK 155
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+I G PL +E +L R + R A++ R G ++
Sbjct: 156 EIKG---PLGQEFAYAHQQLELGHAPVSVMNRMATRVPLTEFRVFATAVVVHRRAGGNLS 212
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLT-VPMII-FFLPVLILVIIGPAILS 321
+ R + + A + G +L+ M++ + V L + P +
Sbjct: 213 LLTERMSHSARDRQDVRNHLMAVTSGSRLSAFGMVLGGIIAVAFLTWLEPDYVR 266
>gi|222479461|ref|YP_002565698.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
gi|222452363|gb|ACM56628.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
Length = 715
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/318 (13%), Positives = 104/318 (32%), Gaps = 8/318 (2%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A ++ F A+++P++ + + VA+ + ++
Sbjct: 1 MIAYLPLLAAFGCCLALLLPAVD-DGADLVVTRVALSLFGDYVGEDGPRRQRQRDLMRAA 59
Query: 75 RDSKSLRNFVKKLNLKA--ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ + R + K L A + V +++ AAG S ++ + + + + G+
Sbjct: 60 HVAGTHRTYAAKTLLYAGVLGVAGSVIGVYAAAGLLSVLDVSEAALRGTLPASLGFVAGV 119
Query: 133 --IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ G KL + + + R + I P + +
Sbjct: 120 TRLTELGLPKLFLLLTLASATLGAALAVGMYYGRWELLDQRAHARGAEIDATLPRTVAFM 179
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMD 249
SG+ + + +AE+ + E+ + + +++ + A + RT D
Sbjct: 180 YALSRSGMPFPRVMDTLAEN-EAVYGEAATELSVAVRDMNAFGTDALTALQRTSRRTPSD 238
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL-P 308
+ + + L G I L + E + ++ L + P
Sbjct: 239 DLADFAENLASVLGTGQPISTFLSDQYELYQEEAESKQQQYLELLSTFAEAYVTALVAGP 298
Query: 309 VLILVIIGPAILSIIDTM 326
+ + I+ L + DT+
Sbjct: 299 LFFITILVVIGLVLEDTL 316
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/318 (14%), Positives = 110/318 (34%), Gaps = 13/318 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPS------LGSGELEKRMKSVAVEREILRKQQITS 62
+ T + + + + + V+ +G E +++ E + +
Sbjct: 312 LEDTLPLLRVVVYLGVPLATFGFVVYVDSVTQGIGGTETVDLSEAIEDESGMSDTASAQA 371
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ + R + L+A + + + + ++ +
Sbjct: 372 DGNPQPDGGVAGGSPSADRWAASRERLRAYDRIRTLRRWAASPVESVLGAPRTVFLLSVP 431
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ ++ L++ F +V I+ V A + ++R I+ A
Sbjct: 432 LAVVVLLVTA---FPITLGPPTEMVAQVETPIVAATVVVLASYAVVYEAHKRRVRRIESA 488
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD LD L E+G S+ ++RRVA L++++ T ++ + + A
Sbjct: 489 VPDFLDRLASVNEAGTSVVGSVRRVA---DSNLEALTDDLQRTRRDIDWGADVGTALRRL 545
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + A + + R +G LR+ E+R+ + E++ + L V
Sbjct: 546 ERRVRSPMTSRAVALITNAMRASGDVGPVLRIAADESRATWSLRRERR-QVMLTYLIVIY 604
Query: 303 IIFFLPVLILVIIGPAIL 320
I F + + I+ + + +
Sbjct: 605 ISFLVFLGIIASLSVSFI 622
>gi|76802097|ref|YP_327105.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76557962|emb|CAI49546.1| transmembrane protein (homolog 3 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 672
Score = 72.5 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 22/271 (8%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ S + +V+ L + L A R ++ +I L ++
Sbjct: 22 PERHDLSEADQERLRDQHGYVRTWFLMNPDRFRQLQRWLNQA--RMGHTYDIYLTKVVLY 79
Query: 124 PIIFLILGIIWIFGYDKLLE------------------YPFQLRVGAVILIGYVGFCAPS 165
++ ++G++ L + VG V L A
Sbjct: 80 TVVAAVIGLLVGGTLAVALSAGGIWAGLGLSAGPVTTLLNSLIVVGTVGLFAGGTLMAGY 139
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ R+ +I P A+ + G++ + + +AE +S+E +
Sbjct: 140 YYPWFRKDTRKRNIDVMLPHAIVYMYALSHGGMNTFEVMEELAEA-DEVYGAVSDEFDMI 198
Query: 226 IAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ ++ + A + N T + + I G+ L E
Sbjct: 199 VRDVELFGNDLFAALRDARNLTPSENLEQFLDDTISVVDSGSDFSAFLEDEAETYMEEAR 258
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E E ++L + +++F L ++++
Sbjct: 259 EEQENFLSTLSILSEIYIVVFVAAPLFVIVM 289
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/295 (12%), Positives = 111/295 (37%), Gaps = 25/295 (8%)
Query: 13 ELAVAITTAVSIFSLIYAV--VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + + +++ I V + + + ++ + +RE R + ++ S
Sbjct: 305 QFIIYLCLPLAMLLFILFVDVLSAPYAQHDFDLEIEDIDTDREWSRLLKSEQKYQEYESR 364
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
+ + + L ++ + + L ++++ L + +V ++
Sbjct: 365 KRKQARREMLGRPIQYIKAQDPL---------------LSLAVSVPLSLVALVVVVATGA 409
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + G L L+ V P + + ++R+ I +PD L++L
Sbjct: 410 VPLSVAGLLDAPIRSTTLLFVLPFLVATV----PLMVLYERERRREQKINERFPDTLNIL 465
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ GI + +AL V+ L +E+ + ++ + + + + F NR +
Sbjct: 466 SSANQMGIPLVEALNLVSR---WSEGVLGKELRMVRNDIRWNHDVERSLLKFANRLDVPQ 522
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
V + L + + + + + + +TR+ +E +++ + + + +I F
Sbjct: 523 VTRTMKLLAKGNHASSDLSKIISIAAEDTRNRYEIERKRR-NEMNAYMAIVIIGF 576
>gi|167902782|ref|ZP_02489987.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 223
Score = 72.5 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 34 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 90
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 91 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 150
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 151 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 190
>gi|317498624|ref|ZP_07956917.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894111|gb|EFV16300.1| hypothetical protein HMPREF0996_01899 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 252
Score = 72.5 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/189 (14%), Positives = 68/189 (35%), Gaps = 6/189 (3%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
++ + F R+ IL+ F + V + + +++ + + + + + +G S
Sbjct: 33 VMIAWLFFDRIAFAILLIPYLFVFMKQQRIHKVHREKKKLRKEFREMMISIGNSLSAGYS 92
Query: 200 IDQALRRVAED--IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
I+ AL+ D + + L++E+ L I +L + ++ Q
Sbjct: 93 IENALKTAKNDLEMYEEHSLLAKELQLLINKLKMNEPVDNLLFDMAEHVGLEEFYQFAQV 152
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV---I 314
+ + + G ++ + + + E K I+ +P IL+ I
Sbjct: 153 ISIAKKSGGNLIEITENTIEHLSQAIQTKEEIHTMIA-AKQMEKKIMSVMPYFILLYVRI 211
Query: 315 IGPAILSII 323
P I+
Sbjct: 212 ANPGYFDIL 220
>gi|331089204|ref|ZP_08338106.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405756|gb|EGG85285.1| hypothetical protein HMPREF1025_01689 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 249
Score = 72.5 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 10/205 (4%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL------VQKRQSSIKRAWPDAL 187
+IF K + + + F P I +K++ + + +A+
Sbjct: 17 YIFLAVKSIAVILLITYVFYESFLPIFFMIPIWVIYARDGLRDLCRKKEKEFRVQFSNAI 76
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYN 244
+ +++G S++ A+R +D+ + +E + +L E F
Sbjct: 77 QAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRKMVHQLDMKMPAVSVMEQFSE 136
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + + + G +R V + E E + KL I+
Sbjct: 137 RMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKIDTEQEIQTMFASKKLEFE-IM 195
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+P I++ + + + ++
Sbjct: 196 CAVPFFIILYMKLTFGEFLSVLYEN 220
>gi|160935909|ref|ZP_02083283.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
BAA-613]
gi|158441151|gb|EDP18868.1| hypothetical protein CLOBOL_00802 [Clostridium bolteae ATCC
BAA-613]
Length = 426
Score = 72.5 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 16/182 (8%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F +G + + F N ++R+ + +P+ L L I + +G+SI A
Sbjct: 242 FVPVMGLGVAGAVLCFFGDQARQQNRTEERKRQLALDYPEVLSRLTIFLGAGMSIRTAWD 301
Query: 206 RVA-------EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++A E + + EEM T ++ AFE F R + L
Sbjct: 302 KIALEYKMMVEQGRRRKRYVYEEMYETSCQMKGGVPEGKAFEEFGRRCGLQSYMKLGGLL 361
Query: 259 IQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPK--------LTVPMIIFFLPV 309
Q+ + G+ ++ + LR +++ +R +A + G K L+V M++ +P
Sbjct: 362 EQNRKNGSKNLRNLLRTEMTDAFEQRKHQARRLGEEAGTKLLLPLFILLSVVMVMIAVPA 421
Query: 310 LI 311
L+
Sbjct: 422 LM 423
>gi|170022930|ref|YP_001719435.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169749464|gb|ACA66982.1| type II secretion system protein [Yersinia pseudotuberculosis
YPIII]
Length = 291
Score = 72.5 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 69/187 (36%), Gaps = 4/187 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + V + + + K K+ +P+ L +
Sbjct: 67 ILLPLCLLVIVYYINSTWINVNYSFVFIVNMIFIIVLQLKYSRSKHYLLFKQDFPEVLLM 126
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + SG SI+Q L R ++I G PL +E+ L L+ + F + Y R
Sbjct: 127 INMAASSGASINQVLERCGKEIRG---PLGQELGLICRRLNLGETPETVFYDAYERFHYP 183
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ + + G + + + L ++ E +K + +++V II +P+
Sbjct: 184 EFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTTEQKKAVMTAQIRMSV-NIISIMPI 242
Query: 310 LILVIIG 316
L ++
Sbjct: 243 LFSFLLY 249
>gi|330816718|ref|YP_004360423.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
gi|327369111|gb|AEA60467.1| Flp pilus assembly protein TadB [Burkholderia gladioli BSR3]
Length = 329
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/318 (14%), Positives = 95/318 (29%), Gaps = 23/318 (7%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ L + + I+ + R + + R ++
Sbjct: 1 MSSGVLWALSFALILAAAGIWLWRGSQMREESAHTRRFFDSRLEQGQRAAAAPAMSGAPV 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ T + + + VD + AG + ++L+ +V+ ++F
Sbjct: 61 GRQQATAAPALPQPAPEGVAAWRAKVDVLLRGLSDRAGLDEVRPVLLMLIGAVVLVVLFA 120
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ W+ A G +W+ + R+ I R P LD
Sbjct: 121 GIRGGWV----------------AAFAALIGGATLVGLWVLRRISARRLKIVRQLPSFLD 164
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ V G S+ A + +G +PL + L A + ++
Sbjct: 165 GVVRLVTLGNSVPAAFQGA---LGTTEMPLRLCLDQVSRMLRTGVEIDRAMLHIAKEYRI 221
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
L S +YG L + + R E E +A S +L+ ++ LP
Sbjct: 222 REFELVGSVLRLSVKYGGRADVMLERMSTFMRDLEQAERELRAMSAETRLSA-WVLGLLP 280
Query: 309 VL---ILVIIGPAILSII 323
+ +V P +
Sbjct: 281 IAVGSFVVSTNPKYFMAM 298
>gi|254381955|ref|ZP_04997318.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340863|gb|EDX21829.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 312
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 83/259 (32%), Gaps = 7/259 (2%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
+A R + L L + + +LR + L V +
Sbjct: 27 AAGRAQRAALIERLSASGAPPPLGRRRRFQGVDRRLRKTEL--GRRIERKLGVTGLDLTP 84
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L + L L + +G A + +++ +R P+
Sbjct: 85 GEFLVYVLAAVVGVWLVSASFLAPFFGPVAAVIGLWAANAFLNWQRSRRNERFINQLPEL 144
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+L ++G+++ A+ A+++ P EE+ L+ + + + R
Sbjct: 145 ARILANATQAGLALRTAIGMAADELE---APAGEELARVADRLAIGHSIEESLGEITERL 201
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM--II 304
+ L+ S R G +I SLR L + E + +T + ++
Sbjct: 202 PSRELVVLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQVTVTAYLVPVM 261
Query: 305 FFLPVLILVIIGPAILSII 323
+L++ + P L +
Sbjct: 262 GLGSLLLVDAMMPGALDRM 280
>gi|170720031|ref|YP_001747719.1| type II secretion system protein [Pseudomonas putida W619]
gi|169758034|gb|ACA71350.1| type II secretion system protein [Pseudomonas putida W619]
Length = 293
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 7/177 (3%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
A +++ +S L ++R + P LD + +++G +++ A+
Sbjct: 90 WVAGLMVLVGLPLLGYFTLSWLCRRRVHQLVEQLPALLDYSVRSLKAGRTLNDAVLGG-- 147
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
I G PL M + A D +R L + RYG +
Sbjct: 148 -IDGSREPLRSTMTRVRRNVQLGVPLDDAVNELAELYNQDELRLFAMGLRINQRYGGNTS 206
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSII 323
+ + L+ R + KA + ++T MI+ LP+ ++ ++ P L +
Sbjct: 207 ELMENLIKLIREREQGSRQLKAMTGETRITA-MILGALPLCMVGYFLMANPHYLLTM 262
>gi|107022597|ref|YP_620924.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116689546|ref|YP_835169.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
gi|105892786|gb|ABF75951.1| type II secretion system protein [Burkholderia cenocepacia AU 1054]
gi|116647635|gb|ABK08276.1| type II secretion system protein [Burkholderia cenocepacia HI2424]
Length = 326
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 91/312 (29%), Gaps = 23/312 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + ++ +++ + + + + + + D+ ++R
Sbjct: 4 ATLLALMFALICAAAGLLLWRGSQVREGRAHAQRFFDSRVGQGARPAASAGDTRTARAPA 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + + AG + L +
Sbjct: 64 AGTANPQEPEQGFARWRASAFNAWTVLSDRAGLDEVRA----------------GLVLSL 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L V A G +WI++ + +R+ I R P LD ++ V
Sbjct: 108 AIVVLLALWAGMAGGVLAAAAALVAGSVLVVLWITSRISRRRLKIVRQLPSFLDGIVRLV 167
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+ A + + +PL + L + A + + ++
Sbjct: 168 TLGNSVPAAFQ---SALQTAEMPLRRCLDDVSRMLRSGVDIDRAMLHIAHTYRIREFELV 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---I 311
L S RYG L + + R E E A S +L+ ++ LP+
Sbjct: 225 GAVLRLSVRYGGRADVMLDRMSTFMRDLEQAERELSAMSAETRLSA-WVLALLPIAVGSF 283
Query: 312 LVIIGPAILSII 323
++ P + +
Sbjct: 284 VIATSPRYFTAM 295
>gi|257139286|ref|ZP_05587548.1| hypothetical protein BthaA_08789 [Burkholderia thailandensis E264]
Length = 301
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/288 (15%), Positives = 80/288 (27%), Gaps = 12/288 (4%)
Query: 35 SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILV 94
++R + L Q ++ R + + A
Sbjct: 23 WRRGEANKERAHAARYIDSRLEPGARPGAQPKMPAAAEPKRAAAPMPAAGAAGGAPAAKP 82
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
E + N V + P++ L + + L V
Sbjct: 83 AEGLARWRERVADAWLNVSNRAGVSEIRTPLVALGAVTAFATLWAGLRGGLLAAVAAFVA 142
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
V F W+++ +QKR+ I R P LD ++ V G S+ A + +
Sbjct: 143 GATLVVF-----WLASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTT 194
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL + L A ++ L S +YG L
Sbjct: 195 DAPLRGCLDHVSRMLRSGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDR 254
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAI 319
+ R E E A S +L+ ++ LPV ++ P
Sbjct: 255 MAVFMRDLEQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKY 301
>gi|225570080|ref|ZP_03779105.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM
15053]
gi|225161550|gb|EEG74169.1| hypothetical protein CLOHYLEM_06176 [Clostridium hylemonae DSM
15053]
Length = 394
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 79/182 (43%), Gaps = 7/182 (3%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ V +L + + ++++ + + +P+ ++ + + +G+++ R+
Sbjct: 212 AVLVVMAVLTAILLYALEKQNRYKQEKEKRLQMLQDYPELVNKFTLFLGAGMTVRNTWRK 271
Query: 207 VAEDIGGQSVPLS-----EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+ D Q+ EEM +T+ E+ ++E F ++ L Q+
Sbjct: 272 IVRDYEKQTEEWGVRYAYEEMKVTLNEMQSGITEAESYERFGRHCKVQEYVKFGALLSQN 331
Query: 262 DRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
R GT + LR+ + ER A + G KL +PM + L V++++++ PA L
Sbjct: 332 LRKGTKDLVHLLRMDAVQAFEERKTRARRLGEEAGTKLLLPMFL-MLTVVLVIVVVPAFL 390
Query: 321 SI 322
S+
Sbjct: 391 SM 392
>gi|291537187|emb|CBL10299.1| hypothetical protein ROI_34750 [Roseburia intestinalis M50/1]
Length = 245
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 74/193 (38%), Gaps = 4/193 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + F ++L+ V + S + + +R + + DA+
Sbjct: 14 LGCLAAGTAVAAAIAWLFYRSWYGMVLVIPVNYLIVSYYKNKKRDERAKKLMIEFRDAIQ 73
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ A + +I +++E++ AE+ N + + R
Sbjct: 74 TVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQMNAEIKLNRNVEEILHDLAVR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ +++ + + R G +R + ++ +E E G KL I+
Sbjct: 134 SGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEVEREVDTVIAGKKLEGK-IMS 192
Query: 306 FLPVLILVIIGPA 318
+P IL + A
Sbjct: 193 VMPFFILAYLNLA 205
>gi|83719714|ref|YP_443056.1| hypothetical protein BTH_I2539 [Burkholderia thailandensis E264]
gi|83653539|gb|ABC37602.1| membrane protein, putative [Burkholderia thailandensis E264]
Length = 336
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 82/292 (28%), Gaps = 12/292 (4%)
Query: 35 SLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILV 94
++R + L Q ++ R + + A
Sbjct: 23 WRRGEANKERAHAARYIDSRLEPGARPGAQPKMPAAAEPKRAAAPMPAAGAAGGAPAAKP 82
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
E + N V + P++ L + + L V
Sbjct: 83 AEGLARWRERVADAWLNVSNRAGVSEIRTPLVALGAVTAFATLWAGLRGGLLAAVAAFVA 142
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
V F W+++ +QKR+ I R P LD ++ V G S+ A + +
Sbjct: 143 GATLVVF-----WLASRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTT 194
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL + L A ++ L S +YG L
Sbjct: 195 DAPLRGCLDHVSRMLRSGVEIDRAMVYVAALYRIKEFELVGSVLRLSVKYGGRADVMLDR 254
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
+ R E E A S +L+ ++ LPV ++ P S +
Sbjct: 255 MAVFMRDLEQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 305
>gi|298674469|ref|YP_003726219.1| type II secretion system F domain-containing protein
[Methanohalobium evestigatum Z-7303]
gi|298287457|gb|ADI73423.1| Type II secretion system F domain protein [Methanohalobium
evestigatum Z-7303]
Length = 750
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/287 (14%), Positives = 97/287 (33%), Gaps = 29/287 (10%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNI--LLVVRLVV 123
D + T K + + + + +L+ A + Y + I + +V
Sbjct: 79 DRQARLFLTIFKKIPFALLGEKMKEKKKKYARLQLQLKQARIPTSYEMYISNAIFYSVVS 138
Query: 124 PIIFLILGIIWIFGYDKLLEYP------------------------FQLRVGAVILIGYV 159
+ ILGI + ++ P + V I +G +
Sbjct: 139 GLTGAILGIFAAYMLIAVIGLPDNLTNLTFGPSTAWLLNFKEIFLSLFIVVFTTITLGGM 198
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+ V+ +R+ +I P A+ + + G++I ++ S
Sbjct: 199 TYALFLVYPGFQASERKRNIDSHLPYAVTFMYALSKGGMNIINVFDSLSRS-SNTYGEAS 257
Query: 220 EEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+E+ I E+ + + + A N T D ++ L+ G SI + +
Sbjct: 258 KEVETIIREMDYFGHDLRTAISNVSEMTPSDRFQDLLHNLLTVIDSGGSISKYFQDKSDQ 317
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + +LG + F L ++I+G +++++ +
Sbjct: 318 YLKKAIDDQKGFLETLGLLAESYVTAFVAGPLFIIIMG-IMMTVMGS 363
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/291 (15%), Positives = 102/291 (35%), Gaps = 9/291 (3%)
Query: 4 YFFDLFDATELAVA---ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
+ + + + I + I S+++ V+I + + + E +I
Sbjct: 356 IMMTVMGSGSILMVYAVIYAVLPIGSVMFVVMISIMAPEDFGEPAYLQTNEIFDHGIPEI 415
Query: 61 TSLQKDS--ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
S + + +L + + N N L+ + + +
Sbjct: 416 PSYLEPEYDENGQLINETKEKVEKRQCYENFIKSKQRVKYKNFLKNPLKPLFNNPLLSVA 475
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
V V +I L++ + + +++ Y+ P KRQ
Sbjct: 476 VTSPVAVILLLIFVATNMDTFTTMSETIDFLDDRLVIATYI-IIVPLAIFHETKSKRQKK 534
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ +PD L L VE+G+++ +++ + + + LS+E ++S+ A
Sbjct: 535 LDGNFPDFLKKLASTVETGMTLQDSIKLM---VKTDNEGLSDETRKIWKDISWGMELNDA 591
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
F NR + V + + +++ IG+ L V + SE M+ E+
Sbjct: 592 LVRFANRLKTQVVSRSMTLITKANESSGDIGEVLMVAARDASSEEEMKRER 642
>gi|91772494|ref|YP_565186.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91711509|gb|ABE51436.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 716
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/257 (15%), Positives = 103/257 (40%), Gaps = 5/257 (1%)
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ L ++R+ LN ++ K F + + + I +
Sbjct: 393 AGELINDTEDNVRDREYYLNFAKAKKLLSVR-KFAKNPFDLLMHNPLYSLAVTIPIAILV 451
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ W + + I++ P ++ +++ ++R +PD L
Sbjct: 452 LVIPFWSNIGSLVTTAQKIGFIDDYIVLALFIAIVPMALFHEIMSRKKKHLERNFPDFLK 511
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L E+G+++ +++ +A+ +S L E+ + A++S+ N + F NR +
Sbjct: 512 KLASTNETGMTLRDSIKLMAK---SKSGHLGNEIRMIWADISWGMNVNDSLIRFANRLRT 568
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + +++ +G+ L V + SE+ M+ E +A S+ + + I F +
Sbjct: 569 QVIARSLTLITKANESSGDVGEVLLVAARDAASEQSMKRE-RAMSMMIYIVIIYISFLVF 627
Query: 309 VLILVIIGPAILSIIDT 325
V ++ +I L+ +
Sbjct: 628 VGVIYVISTTFLAEMAA 644
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 29/263 (11%)
Query: 90 KAILVDENIVNKLRAAGFR--SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP-- 145
+ EN+ KL A E ++ + L+ + LI+GI + ++ P
Sbjct: 70 ERKDKYENLQLKLFQARIPLSYEMYVSNAIFYSLLSCVFGLIIGIFVAYISIYVVGLPEA 129
Query: 146 ----------------------FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
F + + +G + ++ +R+ I R
Sbjct: 130 ITKLEFSESSAWILQFKGIFVGFLIMLFFAASLGGGIYGMFMLYPKFQASERKGDIDRQL 189
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENF 242
P A+ + + G++I + R ++ G +S+E+ I E+ + + + A N
Sbjct: 190 PYAVTFMYALSKGGMNIIEVFRLLSRS-GSTYGEVSKEINAIIREMDYFGYDMKTAISNI 248
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R+ D LI G SI + + + ++ + +LG +
Sbjct: 249 SERSPSDRFNELMDNLITIIDSGGSIPRYFQDKAEQYLQKTSIDEKGFLETLGLLAESYV 308
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
F L ++I+G +++++ +
Sbjct: 309 TAFVAGPLFIIIMG-VMMAVMGS 330
>gi|291303312|ref|YP_003514590.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
gi|290572532|gb|ADD45497.1| type II secretion system protein [Stackebrandtia nassauensis DSM
44728]
Length = 220
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/226 (21%), Positives = 82/226 (36%), Gaps = 15/226 (6%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+LRA + S R+ + I IL + I + + +
Sbjct: 4 RTRLRALTRPANPSAVPTRDRRIWIAIATGILTALTIGNH---------YGLLVGAVTTI 54
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
V A ++ + + P ALD+ C+ SG +D+AL AE + + L
Sbjct: 55 VVHLALRRMEPAATRRARERDRADLPFALDVFAACLHSGAPLDRALSTCAEAV---NPAL 111
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ L+ A F + Q + +S G + DSL +L E
Sbjct: 112 ANRFRRAARSLTLGATLAEALTEFD---SLADGHRLVQTIGRSADTGARLADSLHLLAKE 168
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R +R A A G + +P+ + FLP I + P ++S +D
Sbjct: 169 LRFDREQAALSHAHRAGVWMVLPLCLCFLPAFIAAGLLPVVISSLD 214
>gi|134298674|ref|YP_001112170.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1]
gi|134051374|gb|ABO49345.1| hypothetical protein Dred_0807 [Desulfotomaculum reducens MI-1]
Length = 290
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 80/241 (33%), Gaps = 12/241 (4%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
L +L + I N L AG + + + +V+ ++ I
Sbjct: 59 ALGIVLDFKKINNWLVLAGRPFKLNAEEFVGAYIVLVAGTGVVAYTMINL--------GL 110
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ L V P I + QK + I + + + + V +G+ ++
Sbjct: 111 VSKLIGFLFFAVPSVVPYFHIESEAQKARDKINTELINLIYSMDLGVSNGLDEKLLIQWA 170
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
AE G + L E + + F + + +++ G
Sbjct: 171 AEGKGLLASMLRESLKEV----DLGGEEYLIFYRLAEDYNVPDAEEVGMLIKHAEKNGVD 226
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
I SL L + R R + +K + + V +++ ++ + +I GP ++ + +
Sbjct: 227 ISQSLYDLARDFRYRRDSDLDKNIGKVKLTIGVYVVLAYMVMTFALIAGPIMVEYLPYLS 286
Query: 328 D 328
Sbjct: 287 K 287
>gi|28900580|ref|NP_800235.1| putative TadB protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28808960|dbj|BAC62068.1| putative TadB [Vibrio parahaemolyticus RIMD 2210633]
Length = 289
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 9/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ F I ++ + +V + + +S + +R K +P
Sbjct: 65 VGFFAASSIAVYCVNDWFFMFEYWKVLLALEPILFVMFI--LKLSGIQAQR---FKDNFP 119
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL++L + SG SI A V + + EE L +
Sbjct: 120 DALNILSGALSSGQSIVHAFEYVGTQLDN---EVGEEFKKMSERLLIGEDPDDVLARSAA 176
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + G + D + + R +E +K A + + + II
Sbjct: 177 SFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARASAK-II 235
Query: 305 FFLPVLILVII 315
LPV+ ++I+
Sbjct: 236 AALPVIFIMIL 246
>gi|296158798|ref|ZP_06841627.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
gi|295891003|gb|EFG70792.1| Type II secretion system F domain protein [Burkholderia sp. Ch1-1]
Length = 356
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 14/219 (6%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + + + + ++ ++ + + + A ++
Sbjct: 117 RHALARAGIANAKGPAALAGTLVLLLCGWAALVGGALAAGVALCACVMFF-------YFL 169
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ V KR+ I R P LD ++ + G S+ A + + PL E +
Sbjct: 170 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAA---LQTTEAPLRECLDYVSR 226
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L A + + L S +YG L + S R E
Sbjct: 227 MLRTGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAER 286
Query: 288 EKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
E A S +L+ ++ LPV L++ P + +
Sbjct: 287 ELVAMSAETRLSS-WVLAMLPVGIGGFLILSNPKYFASM 324
>gi|84385700|ref|ZP_00988731.1| putative TadB [Vibrio splendidus 12B01]
gi|84379680|gb|EAP96532.1| putative TadB [Vibrio splendidus 12B01]
Length = 304
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 9/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++F + + ++ + +V I+ ++I L R+ K +P
Sbjct: 80 LLFFSISSVAVYFINDWFFRLEYWKVWLGIIP-----ILFIMFILKLSGLREKKFKDNFP 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL++L + SG SI A V + + +E L + +
Sbjct: 135 DALNILSGALSSGQSIVHAFEYVGTQLDN---EVGKEFKKMSERLLIGEDPDDVLARSAS 191
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + G + + + + R +E +K A + + + II
Sbjct: 192 TFPYVEYFFFASTIRINLSRGGQLKNVINRINRIMFEARAIEKKKNALTSEARSSAK-II 250
Query: 305 FFLPVLILVII 315
LPV+ + I+
Sbjct: 251 AALPVIFMCIL 261
>gi|304315118|ref|YP_003850265.1| hypothetical protein MTBMA_c13650 [Methanothermobacter marburgensis
str. Marburg]
gi|302588577|gb|ADL58952.1| putative membrane protein [Methanothermobacter marburgensis str.
Marburg]
Length = 313
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 81/190 (42%), Gaps = 3/190 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + G ++ + + AVI+ ++ +I ++++R +I+++ PD
Sbjct: 46 LAFLAGALFAVLGSVVAAVAGLNVILAVIVGFFMPSILLGAYIFVMMERRVDAIEQSTPD 105
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + +G+ ++ AL V++ G PL +E+ + E+ A + R
Sbjct: 106 FLRQIASLLRAGVGLESALEDVSKQGEG---PLYDELKRAVIEIKIGRTFDDAILSMSER 162
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + +++ R G S+ D + + + R+ ++ E+KA + + + +
Sbjct: 163 LKSQNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANVMMSVMFLIVAAI 222
Query: 306 FLPVLILVII 315
L +I
Sbjct: 223 IAAPFALGMI 232
>gi|239917279|ref|YP_002956837.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
gi|281414243|ref|ZP_06245985.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
gi|239838486|gb|ACS30283.1| Flp pilus assembly protein TadB [Micrococcus luteus NCTC 2665]
Length = 285
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 5/192 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
++ + LL G P + +S ++R ++++ WPD
Sbjct: 52 AGVVSAMAVGGLVVGLLVLSLTSTWTIAACFAVFGAAVPWLLLSWQARRRSTALRELWPD 111
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+D + +G+++ +AL ++ E L E + A + R
Sbjct: 112 AIDHARSAIRAGLTLPEALIQLGETGPEG---LREPFQQFARDYRAGARFVDALDRLKAR 168
Query: 246 TQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+L + G IG L+ L R + + AE +A + +
Sbjct: 169 MADPVADRLVVSLRLTREVGGADIGRLLQTLSEFLRQDARIRAELEARQSWTVNAARLAV 228
Query: 305 FFLPVLILVIIG 316
P L+L+++G
Sbjct: 229 CA-PWLVLLLLG 239
>gi|221066736|ref|ZP_03542841.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220711759|gb|EED67127.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 317
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 7/172 (4%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ + S + + KR+ + + P LD ++ + G S A + ++
Sbjct: 119 IAMSIYGLVCSFGLWRRLSKRREQLLQQLPSFLDNMVRLITIGNSPHAAFQLAVVNV--- 175
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
PL + + A L P+ A ++ S RYG L
Sbjct: 176 PAPLGDALQQASASLRASPDLGHAMGLLERSWRLSEFGLLAAVFRMSTRYGGRADQVLER 235
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAILSII 323
+ + R + E E A S +L+ I+ LPV + ++I+ +
Sbjct: 236 VSAYIRDRQSAERELHALSAEVRLSA-WILALLPVAVGGLIMILNQGYFMTM 286
>gi|190574782|ref|YP_001972627.1| putative type II secretion/pilus assembly transmembrane protein
[Stenotrophomonas maltophilia K279a]
gi|190012704|emb|CAQ46332.1| putative type II secretion/pilus assembly transmembrane protein
[Stenotrophomonas maltophilia K279a]
Length = 313
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/299 (14%), Positives = 104/299 (34%), Gaps = 27/299 (9%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +SI S++ A+ + G+ ++ ++ E + S + +S D
Sbjct: 1 MLGVLSIISVLLALAVWLWGTASNREQRQASLQHAEQQLARGGASGGAPAGASVAAANDP 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ +++ L L+ AG ++ + L I++ LV ++ ++ ++ +
Sbjct: 61 ARPASAGRRVLPLDGL--------LQRAGLQTGWKLPIMV---LVPGLVLSVVAMLRLGT 109
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ +W+ K ++ + PD LD L+ G
Sbjct: 110 AWMFPLTLLLYLLA------------CWLWVMRRTTKLRAQLLHQLPDFLDNLVRLTALG 157
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S+ A + + S PL + T+ + A +MD ++ +
Sbjct: 158 NSLQAAFQVASMQ---TSAPLRGLLDTTVRYARSGMDLDRALSLAAQPYRMDVLKVLSVV 214
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ S R G L+ + R + E A + +++ ++ LP V++
Sbjct: 215 IGVSVRIGGRSDQILQRMGDFMRDLEQAQQELAATTSETRMSA-WVLGLLPPASAVLMA 272
>gi|291540421|emb|CBL13532.1| hypothetical protein RO1_32050 [Roseburia intestinalis XB6B4]
Length = 245
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 74/193 (38%), Gaps = 4/193 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + F ++L+ V + S + + +R + + DA+
Sbjct: 14 LGCLAAGTAVAAAIAWLFYRSWYGMVLVIPVNYLIVSYYKNKKRDERAKKLMIEFRDAIQ 73
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ A + +I +++E++ AE+ N + + R
Sbjct: 74 AVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQMNAEIKLNRNVEEILHDLAVR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ +++ + + R G +R + ++ +E E G KL I+
Sbjct: 134 SGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEVEREVDTVIAGKKLEGK-IMS 192
Query: 306 FLPVLILVIIGPA 318
+P IL + A
Sbjct: 193 VMPFFILAYLNLA 205
>gi|229825136|ref|ZP_04451205.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
49176]
gi|229790508|gb|EEP26622.1| hypothetical protein GCWU000182_00487 [Abiotrophia defectiva ATCC
49176]
Length = 245
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 80/194 (41%), Gaps = 4/194 (2%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F L F + +++I V L++KR++ + + + L +++ ++
Sbjct: 21 FLISVSLGMLFYKSIVGILIIIPFVIIFEKVNKKKLIEKRKNELSAQFIEFLQVIMSSLK 80
Query: 196 SGISIDQALRRVAEDIGGQS---VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+G S+++A+ E + + E++ + L + +F R+ ++ +
Sbjct: 81 AGTSLERAILSARERLYSLYNNDSLIITEIISMESSLRMNIPVEDILYDFGKRSGIEDIN 140
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ S R G ++ + + + ME E +A G KL + LP IL
Sbjct: 141 QFAEVCKVSKRAGGNLIKVMDHTIKCIVDKNEMEREIQAFISGKKLESKFMTAILPA-IL 199
Query: 313 VIIGPAILSIIDTM 326
+ + ++ +++++
Sbjct: 200 LYMNISMADMMNSL 213
>gi|167919044|ref|ZP_02506135.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 216
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 27 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 83
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 84 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 143
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 144 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 183
>gi|219853241|ref|YP_002467673.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
gi|219547500|gb|ACL17950.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
Length = 644
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/324 (10%), Positives = 106/324 (32%), Gaps = 19/324 (5%)
Query: 12 TELAVAITTAVSIFS--LIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS-- 67
+ I + + + + + + + + V ++ ++ + ++ +
Sbjct: 261 PLFLIIIMVVMGMMGGSAVLQLSMVTYVMLPVGTSLFMVMIDLVSIKSEVVSRFTQKKLL 320
Query: 68 -ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S +R R++ F L A S ++ R++ +
Sbjct: 321 HEFSDVRVRETTDEEPFFATLARYDKWRQ-------VKAFLSSPLQAFVMKPSRILYISV 373
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAV---ILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ + + + + + V I+I + P ++ I+ +
Sbjct: 374 PIGIIYVLVHLLMVQGAPDLETYLDLVDDHIVIAVLIILVPYSVFFEGWNRKLGGIESSI 433
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ LD + + G+++ QA+ + L E+ ++ + N A F
Sbjct: 434 PEFLDRMAGINQVGLTMAQAISIMVN---ANLGVLGYEIKRIKRDMEWGANFSEALMRFE 490
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + + ++ I + L + S+ R + +++ + + +
Sbjct: 491 RRITTPIIARMVVLITKASEMSGQINEVLNIAASDAR-MSDVLKKERLGEMFIYTAIVYL 549
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
F + + ++ ++ L ++ ++
Sbjct: 550 SFMVFIFVVGVLSSQFLPVLGGIQ 573
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/192 (13%), Positives = 60/192 (31%), Gaps = 3/192 (1%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ I + + A + + + W R + I +A+ +
Sbjct: 85 VSIGPIPMGIIEQVGVGTLAFSIAAAITYFIALQWPGLQKGTRSTKINLTLHNAVAYMYA 144
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCV 251
+ G + R +++ ++ E + + F + A T +
Sbjct: 145 MRKGGGELMVIFRSISDH-SNIYGEVALEFRQIVRDADFFGLDEVSAIRRLNLTTPSTKL 203
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
++ Q L+ G + L V + E E ++ L + +F L
Sbjct: 204 KDFLQDLLSVIESGGDMATFLSTRVHLFQEEARFEQKQFLGFLSLVAESYVTLFVAGPLF 263
Query: 312 LVIIGPAILSII 323
L+II ++ ++
Sbjct: 264 LIIIM-VVMGMM 274
>gi|167815891|ref|ZP_02447571.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 212
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 23 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 79
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 80 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 139
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 140 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 179
>gi|14521587|ref|NP_127063.1| hypothetical protein PAB1459 [Pyrococcus abyssi GE5]
gi|5458806|emb|CAB50293.1| Bacterial type II secretion system protein F domain, putative
[Pyrococcus abyssi GE5]
Length = 308
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 96/250 (38%), Gaps = 19/250 (7%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S ++++ K L ++ L +AG + S + + +++ +I
Sbjct: 2 RDLAREGPISSRFIAAIERIIPKRYLKRYDL--LLYSAGIDFKAS--EYITISIIMGVIG 57
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ I L ++GF V+ + + KR +++A PDA
Sbjct: 58 GAVAFILFGTLS---------SALIAFLGVFLGFLY--VYPNFRIAKRIEEMEKALPDAF 106
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L + +G+S +AL +A + L+ E T+AE+ A F R +
Sbjct: 107 FYLAGSLRAGVSFSEALEELAT---AKFGALTAEFRRTVAEMKRGRPTVDALRAFALRNK 163
Query: 248 -MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V + +I++ G + D L + ++ R ++ E+KA++ + F
Sbjct: 164 KSPIVYRSMMIVIEALERGAPMADVLVSVGNDVREILRIKKERKASTGMQMMFFLTSGGF 223
Query: 307 LPVLILVIIG 316
+ +I+ I+
Sbjct: 224 VGPMIVAIVS 233
>gi|167911028|ref|ZP_02498119.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 217
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 28 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 84
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 85 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 144
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 145 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 184
>gi|262164952|ref|ZP_06032690.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
gi|262027332|gb|EEY45999.1| flp pilus assembly protein TadB [Vibrio mimicus VM223]
Length = 303
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 62/191 (32%), Gaps = 9/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
++F ++ I ++ + +V + + + + +P
Sbjct: 79 LMFFLISAIAVYFINDFFLQQTYWKVLLFLQPLLFVVFIVKLRAHKTAK-----FQSNFP 133
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL++L + +G SI A V + + + E L +
Sbjct: 134 DALNILSGALSAGQSIVHAFEYVGKQLDN---DVGYEFKFMAERLLIGEDPDEVLARSAA 190
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + G + + + + R ++ +K A + + + II
Sbjct: 191 SFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEARSSAK-II 249
Query: 305 FFLPVLILVII 315
LPV+ L+I+
Sbjct: 250 AALPVIFLLIL 260
>gi|302536566|ref|ZP_07288908.1| integral membrane protein [Streptomyces sp. C]
gi|302445461|gb|EFL17277.1| integral membrane protein [Streptomyces sp. C]
Length = 312
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/253 (15%), Positives = 83/253 (32%), Gaps = 7/253 (2%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R L + + + +LR + + + L +
Sbjct: 33 RAALIDRLSAEGAPDPVGRRRRFQGLDRRLRRT--QLGRRIELKLATTGLDLTPGEFFAY 90
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L L + G +G A + +++ +R P+ +L
Sbjct: 91 VLMAVAGVWLVSASLLAPFFGPVAGLIGLWAANAFLNWQRARRTERFINQLPELARILAN 150
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++G+++ A+ AE++ P EE+ L+ + + A R +
Sbjct: 151 ATQAGLALRTAIGIAAEELE---APAGEELSRVADRLAVGHSIEEALGEIVERLPSRELV 207
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVL 310
L+ S R G +I SLR L + E + +T ++ I +L
Sbjct: 208 VLVSTLVLSARAGGAIVGSLRNLTVTLEQRKETRREIRTQLSQVTVTAYLVPAIGLGSLL 267
Query: 311 ILVIIGPAILSII 323
++ ++ P L +
Sbjct: 268 LVDLMMPGALDRM 280
>gi|160878194|ref|YP_001557162.1| Flp pilus assembly protein TadB-like protein [Clostridium
phytofermentans ISDg]
gi|160426860|gb|ABX40423.1| Flp pilus assembly protein TadB-like protein [Clostridium
phytofermentans ISDg]
Length = 247
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 79/202 (39%), Gaps = 7/202 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + F ++ + F + +L+ + + + R+ + + D +
Sbjct: 15 FLVCLFKGFLLCLIVSFLFYQNIFLCLLLSPYLYFFYKKEQRKMAEDRKKKLNTEFLDGI 74
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQS---VPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +E+G S++ A + +D+G + +E +++++ + A F N
Sbjct: 75 HSLSVALEAGYSVENAFKAAIKDLGLMYSKEALIMKEFQCIVSQINHNIPIENAIGEFAN 134
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R++++ V ++ + R G + +++ + + E + + K I+
Sbjct: 135 RSKLEDVECFSEVFKTAKRTGGDLVAIIKMTGKTIGEKVEVMREIETL-ITAKKMEANIM 193
Query: 305 FFLPVLILVII---GPAILSII 323
+P IL + P L +
Sbjct: 194 KLVPFGILGYMLLGSPQFLKPL 215
>gi|72162674|ref|YP_290331.1| integral membrane protein [Thermobifida fusca YX]
gi|71916406|gb|AAZ56308.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 310
Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/249 (12%), Positives = 80/249 (32%), Gaps = 20/249 (8%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
Q L S + + R + + +L + I +L AG + + S
Sbjct: 31 AQRRMLAARSVLAEVERRANSPMARLDVRLRRTELGRQ--IRTRLDRAGVQMKVSS---- 84
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
L + ++ + + + VG+ +++ +KR+
Sbjct: 85 ----------FALLVAACAVAAIVIVWHVLAPLLGLCAAALVGY-LFLAYLNRQEEKRRE 133
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ P+ +L ++G+++ A+ A+++ P E+ + +
Sbjct: 134 AFTAQLPELARVLSNATQAGLALPTAIDMAADELAD---PAGAELRHVAESIKVGQPFEE 190
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A + R + L+ S R G ++ +LR + + + E +
Sbjct: 191 ALNDLRKRMPSREIGVLISTLLVSARSGGALVTALRNISETLENRKETRREVRTILSETT 250
Query: 298 LTVPMIIFF 306
T ++
Sbjct: 251 STAWTLLLM 259
>gi|85711970|ref|ZP_01043024.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
gi|85694156|gb|EAQ32100.1| Flp pilus assembly protein TadB [Idiomarina baltica OS145]
Length = 281
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 82/232 (35%), Gaps = 10/232 (4%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
++ + + L RS + L V+ ++ + +
Sbjct: 16 WLAWMRQLNKNRIQAFEGTLAQHTQRSLQEFFVFLPVKWLIRGYLFACASLPLLAGLVWG 75
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ + ++ P V + KR +++R P L L ++SG+S+
Sbjct: 76 GKAALVTLLVCVVS-------PPVLYRRMRNKRYRALQRQLPMLLMNLSNQLKSGMSMVN 128
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
A+ + ++ PL +E+ I ++ + A ++ R + + QAL
Sbjct: 129 AVTSLFDEFE---APLGQEVNELIRQVRLGDDLPTALTDWQRRVPIFSITLVVQALTLGY 185
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
R G LR L ++ + ++A S ++ ++I L L++
Sbjct: 186 RNGGQQSQVLRRLAENLGQQQKVRDRQQALSAQGRMQAWVLICMPLALFLLL 237
>gi|313906428|ref|ZP_07839765.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
gi|313468729|gb|EFR64094.1| conserved hypothetical protein [Eubacterium cellulosolvens 6]
Length = 238
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 79/206 (38%), Gaps = 12/206 (5%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++W G + + L + + L KR+ + + D L L
Sbjct: 9 ALLWGCGLGGFVVWICYRSFWGFPLAAVIAGVYVRMKREELAWKRKQLLHYHFRDFLAAL 68
Query: 191 LICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +G S++ +++ A+D+ L E+ + ++ F +V F + R+
Sbjct: 69 HTAMLAGYSVENGVKQAAKDLERLYGSSDVLCVELHDILRQMHFQKPVEVLFRDLGRRSG 128
Query: 248 MDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ +RN + L + R G ++ L R L + +++ ++ A KL
Sbjct: 129 LEDIRNFAEILSIAKRTGGNMNMILQCTWRNLCGKIDTKQEIDTMIAARKYEQKL----- 183
Query: 304 IFFLPVLILVIIGPAILSIIDTMKDH 329
+ +P I++ + I+ M +
Sbjct: 184 MSLMPAGIILYLRLTFQGFIERMYGN 209
>gi|254168637|ref|ZP_04875480.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289595686|ref|YP_003482382.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
gi|197622471|gb|EDY35043.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289533473|gb|ADD07820.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
Length = 290
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 84/215 (39%), Gaps = 11/215 (5%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
V I I I I Y K + + +++ P ++ L ++ ++
Sbjct: 9 YVSAFIAAIFISIGIMLYLKKTNIFGLIPLDFIVIGTSAFLFGPGIY-DMLHTRKIKKME 67
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+PD L + G+++ ++ + G+ L++E+ +++S+ + A
Sbjct: 68 ERFPDFLRDVAESSRFGMTLADSIVVASS---GKYGALTDEIKRMASKISWGVPVKDALL 124
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+F R + + T +I+S+ G +I D L ++ R +L E+ +
Sbjct: 125 SFNERVKTPLIDRITAIIIKSNEAGGNIADVLSMVARNARESQLAAKERNIEMFTYGFVL 184
Query: 301 PMIIFFLPVLILVI-------IGPAILSIIDTMKD 328
F I+++ +G A +++ ++ K
Sbjct: 185 LTSFFVFLATIIILNNSFLPEMGKAGMAVEESFKK 219
>gi|295836765|ref|ZP_06823698.1| integral membrane protein [Streptomyces sp. SPB74]
gi|295826196|gb|EFG64731.1| integral membrane protein [Streptomyces sp. SPB74]
Length = 314
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 18/259 (6%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ + A R + + + + S L +R + R ++ + +L A
Sbjct: 20 LVAAARLWSQGRAAREALVNRLAGDSHLGSRTQGARRLAGLDRAVRRTRAGRALHRRLSA 79
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
G L + VG +
Sbjct: 80 TGLPVST---------------GEFTLYALAALVLLWTAAAIVLAPFFGPIAALVGAWSA 124
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+++ KR + PD LL +G+++ AL AE++ P EE+
Sbjct: 125 YAFLNWQRAKRIEAFISQLPDVARLLANATAAGLALRTALAMAAEELEN---PAGEELSN 181
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+L+ + A + R + L S++ G ++ SLR L +
Sbjct: 182 VADQLALGRSVDEALDELQRRLPSRELVVLVTTLALSNKAGGTVVGSLRNLTVTLEERKE 241
Query: 285 MEAEKKAASLGPKLTVPMI 303
E + T +
Sbjct: 242 TRREVRTMLSEVNATAFTV 260
>gi|257388762|ref|YP_003178535.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257171069|gb|ACV48828.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 807
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/305 (15%), Positives = 111/305 (36%), Gaps = 11/305 (3%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
T + + + + I V+ + + + L ++ T+
Sbjct: 311 TLADTLVFIQMVGYLMIPLANAGFVLYLGQRLAI---LGIGNNKTTTLLDRRATTTFAKP 367
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
S T + +++ L + + + ++ + +L V + + ++
Sbjct: 368 TDSGGSTATDGGYADSIERRQLAVYDRIATVKRLVTSPVQTFLWNPSRVLYVTVPIAVLA 427
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ L F + + +L F + +++ I+ + P+ L
Sbjct: 428 VALRAPAAFETGTVNLRVLDDVLIQSLLFVLATFAIARELYTRRIRR----IEASTPELL 483
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ L E+G+++ ++L RV G LSEE+ A+++ N + A F R +
Sbjct: 484 ERLASLNEAGMTVVESLERVR---GTDVGALSEEVDRIWADVTMGANVEDALTRFGRRIR 540
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ LI + R +G LR+ + RS+ + +++ L L V I F +
Sbjct: 541 TTSMSRVVTLLINAMRSSGKMGPILRIAADQARSDYRLRRQRRQEML-TYLVVIYISFLV 599
Query: 308 PVLIL 312
++I+
Sbjct: 600 FLVII 604
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/320 (14%), Positives = 96/320 (30%), Gaps = 6/320 (1%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
L AV + A+ + R R I ++ L K +
Sbjct: 1 MQLNPLGTLPVFAVIAILCVVALAMLDETFDTSLTRFGRRLFGRYIPESEERERLLKSAF 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + L + + L A +++++ + +
Sbjct: 61 VVYTYRTYAARTLLYTALAALGGAITGVYLFGGLLLA---IPGIVDLMMGLPRTMVNALG 117
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I G + ++L V + + + + RQ +I L
Sbjct: 118 IRGFELVLTPREILWILIGGGVITGVTAAGLTYWLRWEMPRSRAAVRQRAIDEGQGRTLA 177
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQ 247
L G+S ALR ++++ +EE+ + + ++ + A RT
Sbjct: 178 FLYALSRGGVSFPAALRTLSDN-REIYGASAEEVSVAVRQMDLFGQDMITAVRGMAGRTP 236
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + L + G S+ LR T+ E E+ L + +
Sbjct: 237 SEDFQTFAENLASVLQSGRSLSTFLREQYERTKDESERRQEEILEHLATVAEAYVTVLVA 296
Query: 308 PVLILVIIGPAI-LSIIDTM 326
VL + I L++ DT+
Sbjct: 297 AVLFFITILLVFGLTLADTL 316
>gi|169235695|ref|YP_001688895.1| hypothetical protein OE2212R [Halobacterium salinarum R1]
gi|167726761|emb|CAP13547.1| conserved hypothetical protein [Halobacterium salinarum R1]
Length = 692
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 85/227 (37%), Gaps = 7/227 (3%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA---V 153
I +LR +R L ++L ++ + + +++ A
Sbjct: 382 AISERLRPVLYRLRNPLTVVLETPTLLFWVSCPIAAVYLGSQWWAPLSTGVFAPAAYDDA 441
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
++ V ++R+ +I+ PD LD E+G+ A+ + G
Sbjct: 442 LVHATVFVVGTFAVAYETARRRRKAIEAEVPDFLDRFASTNEAGM---AAVESFGRTVDG 498
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L++E+ T A++ + + A F +R V + ++G LR
Sbjct: 499 DLGALTQELERTWADIQWGARIEHALTRFRDRVNTPAVSRVVALTTNAMAASGNLGPVLR 558
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ +E + R +E +++ L + V + FF+ + I+V + +
Sbjct: 559 IAANEATASRRLERDRRNELL-TYVVVIYVSFFVFIAIIVALDTIFI 604
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 7/295 (2%)
Query: 29 YAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKK-- 86
G+ +++ + V + + ++ +++ R + +
Sbjct: 1 MVGAAAITGANRVDRVLSRVGRAAFGGLARDRERANPEQVAALQGAHVAQTYRTYAARTY 60
Query: 87 -LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
A L + L A + + + P+ L + + F L
Sbjct: 61 LFATLAALTASILGVYLVAGVLVFLGGASAGVRSQFPGPVRGLFVDSVAAFSPGVLFGAF 120
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
++ Y + A + +R I + + + SG+ + + LR
Sbjct: 121 VLSGATVGVVAAYGTYTARWLRPRYAAGERARRIDASMERTVAFMYALSRSGMPLAEVLR 180
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+A + E + ++ + A E +RT D + T+ L + G
Sbjct: 181 ILARNQPVYGAAAEEMAVAVTDIDNYGADIITALERVGSRTPSDDLAEFTENLGSILQSG 240
Query: 266 TSIGDSLRVLVSETRSE----RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + L+ E + E A +TV + + ILV+IG
Sbjct: 241 SDLPAFLKQEYEYYAEEAEATQSQFLELLATLAEAYVTVLVAGPLFLITILVVIG 295
>gi|294631143|ref|ZP_06709703.1| integral membrane protein [Streptomyces sp. e14]
gi|292834476|gb|EFF92825.1| integral membrane protein [Streptomyces sp. e14]
Length = 313
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 3/175 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ L L + G +G A ++S QKR P+
Sbjct: 88 FFVGMLAVVAALWLIGQAALAPFFGPIAGLLGIWAALQFLSWQRQKRIEKFINQLPELAR 147
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++G+++ A+ AE++ P EE+ +L+ + A +R
Sbjct: 148 ILANATQAGLALRTAVGMAAEELE---APAGEELGKVSHQLALGASMDDALGELADRLPS 204
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ L+ ++R G + +LR L + E + +T +
Sbjct: 205 RELVVLVTTLVLANRAGGQVVSALRNLTETLEERKETRREVRTQLSQVNMTSYAV 259
>gi|45442766|ref|NP_994305.1| hypothetical protein YP_3004 [Yersinia pestis biovar Microtus str.
91001]
gi|51597674|ref|YP_071865.1| integral membrane protein. [Yersinia pseudotuberculosis IP 32953]
gi|108809094|ref|YP_653010.1| hypothetical protein YPA_3103 [Yersinia pestis Antiqua]
gi|108810711|ref|YP_646478.1| hypothetical protein YPN_0546 [Yersinia pestis Nepal516]
gi|145597783|ref|YP_001161859.1| hypothetical protein YPDSF_0473 [Yersinia pestis Pestoides F]
gi|150260281|ref|ZP_01917009.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162418856|ref|YP_001604879.1| type II secretion system protein F domain [Yersinia pestis Angola]
gi|165924990|ref|ZP_02220822.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165939873|ref|ZP_02228412.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. IP275]
gi|166008715|ref|ZP_02229613.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166212189|ref|ZP_02238224.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399582|ref|ZP_02305106.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419108|ref|ZP_02310861.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425112|ref|ZP_02316865.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167466379|ref|ZP_02331083.1| type II secretion system protein F domain protein [Yersinia pestis
FV-1]
gi|186896812|ref|YP_001873924.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|218927880|ref|YP_002345755.1| hypothetical protein YPO0689 [Yersinia pestis CO92]
gi|229837371|ref|ZP_04457534.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
gi|229840583|ref|ZP_04460742.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842867|ref|ZP_04463019.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. India 195]
gi|229900908|ref|ZP_04516032.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
gi|294502755|ref|YP_003566817.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
gi|45437632|gb|AAS63182.1| putative membrane protein [Yersinia pestis biovar Microtus str.
91001]
gi|51590956|emb|CAH22614.1| Putative integral membrane protein [Yersinia pseudotuberculosis IP
32953]
gi|108774359|gb|ABG16878.1| membrane protein [Yersinia pestis Nepal516]
gi|108781007|gb|ABG15065.1| putative membrane protein [Yersinia pestis Antiqua]
gi|115346491|emb|CAL19365.1| putative membrane protein [Yersinia pestis CO92]
gi|145209479|gb|ABP38886.1| membrane protein [Yersinia pestis Pestoides F]
gi|149289689|gb|EDM39766.1| putative type II secretion system integral membrane protein
[Yersinia pestis CA88-4125]
gi|162351671|gb|ABX85619.1| type II secretion system protein F domain protein [Yersinia pestis
Angola]
gi|165912184|gb|EDR30822.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923190|gb|EDR40341.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165992054|gb|EDR44355.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166206935|gb|EDR51415.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963102|gb|EDR59123.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167052086|gb|EDR63494.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055875|gb|EDR65656.1| type II secretion system protein F domain protein [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|186699838|gb|ACC90467.1| type II secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229682247|gb|EEO78339.1| Flp pilus assembly protein TadB [Yersinia pestis Nepal516]
gi|229690134|gb|EEO82191.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696949|gb|EEO86996.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229705494|gb|EEO91504.1| Flp pilus assembly protein TadB [Yersinia pestis Pestoides A]
gi|262360787|gb|ACY57508.1| hypothetical protein YPD4_0599 [Yersinia pestis D106004]
gi|262364732|gb|ACY61289.1| hypothetical protein YPD8_0599 [Yersinia pestis D182038]
gi|294353214|gb|ADE63555.1| hypothetical protein YPZ3_0645 [Yersinia pestis Z176003]
gi|320016748|gb|ADW00320.1| Flp pilus assembly protein TadB [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 291
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 4/164 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 103 LQLKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLI 159
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L+ + F + Y R ++ + + G + + + L ++
Sbjct: 160 CRRLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTT 219
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E +K + +++V II +P+L ++ + I+ + H
Sbjct: 220 EQKKAVMTAQIRMSV-NIISIMPMLFSFLLYLLDPTTIEFVWQH 262
>gi|167748319|ref|ZP_02420446.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
gi|167652311|gb|EDR96440.1| hypothetical protein ANACAC_03063 [Anaerostipes caccae DSM 14662]
Length = 445
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 3/178 (1%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
IL + + K +P + ++ + +G++I A+
Sbjct: 267 LPALAAIGILCLVLLWYTEEERQKQKKAKAMKETMEEYPMIISRFVLLLGAGMTIQGAVH 326
Query: 206 RVAEDIGGQSV-PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ + + +++ ++ A + Q+ C + + L QS
Sbjct: 327 SIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQALRELGSSIQLPCYKKLSVLLSQSLLR 386
Query: 265 GT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
GT + L +E SER A +K KL +PMI+ L V++ +++ PA LS
Sbjct: 387 GTRDLLSRLEEEETEAFSERKETARRKGEEASTKLLMPMIL-MLIVILTLLMVPAFLS 443
>gi|269216232|ref|ZP_06160086.1| putative bacterial type II secretion system protein F domain
protein [Slackia exigua ATCC 700122]
gi|269130491|gb|EEZ61569.1| putative bacterial type II secretion system protein F domain
protein [Slackia exigua ATCC 700122]
Length = 335
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/318 (14%), Positives = 89/318 (27%), Gaps = 16/318 (5%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
DA L A I I A + GSG L + R R D+
Sbjct: 1 MDAQVLLGGACLAAGIACGIVAARTFAWGSGVLVRARAQADSFRGEDRSG-----VGDTG 55
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ +A+L + G S + +
Sbjct: 56 RALRIVGYVTRNGVPAFSWARRAVLSFPRARRRFE--GVADIVSRSC-GGASVEGVCEAF 112
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + + L F A S ++ PDAL
Sbjct: 113 LLLLCMLGTVSLIAARSVIFTACLCALAVACTFAAA----SRRRDAELQRMRELVPDALR 168
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ C +G+++ QA AE PL + + ++ + A E F + +
Sbjct: 169 CMEACFHAGLTVPQAF---AEVARETKPPLRDAFSMVSHDMELGRSVDEALERFRRASSL 225
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ AL G ++ + + + KL+ ++ +P
Sbjct: 226 PELSFVAMALDVQHACGGDASRIVQSAQESVERGIELRRSLRVQTAQAKLSAQ-VVSIMP 284
Query: 309 VLILVIIGPAILSIIDTM 326
+ +LV++ +D
Sbjct: 285 IALLVVLSGIDPGFMDPF 302
>gi|167894382|ref|ZP_02481784.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 205
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 16 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 72
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 73 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 132
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 133 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 172
>gi|167845810|ref|ZP_02471318.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 202
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 13 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 69
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 70 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 129
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 130 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 169
>gi|167824264|ref|ZP_02455735.1| type II secretion system protein [Burkholderia pseudomallei 9]
Length = 204
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 15 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 71
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 72 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 131
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 132 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 171
>gi|167738670|ref|ZP_02411444.1| type II secretion system protein [Burkholderia pseudomallei 14]
Length = 200
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 11 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 67
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 68 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 127
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 128 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 167
>gi|258624767|ref|ZP_05719698.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|262173890|ref|ZP_06041567.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
gi|258582929|gb|EEW07747.1| Flp pilus assembly protein TadB [Vibrio mimicus VM603]
gi|261891248|gb|EEY37235.1| flp pilus assembly protein TadB [Vibrio mimicus MB-451]
Length = 303
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 9/195 (4%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ ++F ++ I ++ + +V + + + +
Sbjct: 75 ALKLLMFFLISAIAVYFINDFFLQQTYWKVLLFLQPLLFVVFIVKLRAHKTAK-----FQ 129
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+PDAL++L + +G SI A V + + + E L +
Sbjct: 130 SNFPDALNILSGALSAGQSIVHAFEYVGKQLDN---DVGYEFKFMAERLLIGEDPDEVLA 186
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + + + + R ++ +K A + + +
Sbjct: 187 RSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDKKKNALTSEARSSA 246
Query: 301 PMIIFFLPVLILVII 315
II LPV+ L+I+
Sbjct: 247 K-IIAALPVIFLLIL 260
>gi|238782878|ref|ZP_04626907.1| Type II secretion system protein F domain protein [Yersinia
bercovieri ATCC 43970]
gi|238716301|gb|EEQ08284.1| Type II secretion system protein F domain protein [Yersinia
bercovieri ATCC 43970]
Length = 181
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
+ +P+ + ++ + SG SI+Q L R +I + PL +E+ L +L+ + +
Sbjct: 6 FHQDFPEVILMITMAASSGASINQILERCGYEI---NGPLGDELTLICRKLNLGESPETV 62
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F + Y R ++ + + G + + L S + E +K + ++
Sbjct: 63 FYDAYQRFHYPEFYFLITIILLNLQQGGQLRELTNRLSSVIAKNKTSEQKKAVMTAQTRM 122
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+V II +P+ +++ + I++M +H
Sbjct: 123 SV-NIISLMPLAFSLLLYFIDPTTIESMWNH 152
>gi|295107881|emb|CBL21834.1| Bacterial type II secretion system protein F domain. [Ruminococcus
obeum A2-162]
Length = 341
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 6/191 (3%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ K + L +V + + KR + +P + + ++
Sbjct: 149 LIWQKSGDQTGSLLASLAFFAAFVVMLKKAKEQQEEMAKRAEQLLMDYPSLIMKFTLLIQ 208
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEE----MLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G++ + ++++ D + + E+ A+ F R
Sbjct: 209 AGMTARKVFQKMSADYMRNRSKTGRYAYEAITIMCHEMDSGVAEMEAYRRFGERCGQMKY 268
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + LIQ+ + G+ + D L E ER +A + KL VPMI+ L V+
Sbjct: 269 KTFSTILIQNLQKGSHRMADLLEKEALEAWDERKRKARVLGETAATKLLVPMIM-MLAVV 327
Query: 311 ILVIIGPAILS 321
+ +I+ PA LS
Sbjct: 328 MAIIMIPAFLS 338
>gi|254178308|ref|ZP_04884963.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|160699347|gb|EDP89317.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
Length = 331
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 17/313 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
++ A AV F I +L +R + V + ++ + + A +R
Sbjct: 1 MSAADVVAVGAFFAIVVAGFIVRALHDLARRRPAARVRSRVEALREPRAAARPVAPARAS 60
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ + LRA G + V + L
Sbjct: 61 RVGLQLFTRT------HGEGEGGALRAWLRARGEHVRTAAGGGGVRAIAFASALAALAGF 114
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + A+ L+ + + +PDALDL++
Sbjct: 115 VGASFAGFAPWLRLALAAALAAGAARAVY------RILIGRFKQRFLSVFPDALDLIIRA 168
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +GI + QA+ P+ L + + E R Q+
Sbjct: 169 VRAGIPVAQAIGTAGR---ESEEPVRATFRAMGDALRVGADLKDVLEQQAERLQLADFSF 225
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLI 311
L+ G ++ ++L L R+ R + + +A + ++ +I + F
Sbjct: 226 FGVCLVLQRETGGNLTETLENLSGIIRTRRDIRMKTRALTAEGRIASKIIAAVPFAIAGF 285
Query: 312 LVIIGPAILSIID 324
L ++ ++++
Sbjct: 286 LFVVNRPYVNLLF 298
>gi|167767552|ref|ZP_02439605.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
gi|167710844|gb|EDS21423.1| hypothetical protein CLOSS21_02071 [Clostridium sp. SS2/1]
gi|291558489|emb|CBL37289.1| Flp pilus assembly protein TadB [butyrate-producing bacterium
SSC/2]
Length = 252
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/189 (14%), Positives = 67/189 (35%), Gaps = 6/189 (3%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
++ + F R+ IL+ F + + + +++ + + + + + +G S
Sbjct: 33 VMIAWLFFDRIAFAILLIPYLFVFMKQQRIHKGHREKEKLRKEFREMMISIGNSLSAGYS 92
Query: 200 IDQALRRVAED--IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
I+ AL+ D + + L++E+ L I +L + ++ Q
Sbjct: 93 IENALKTAKNDLEMYEEHSLLAKELQLLINKLKMNEPVDNLLFDMAEHVGLEEFYQFAQV 152
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV---I 314
+ + + G ++ + + + E K I+ +P IL+ I
Sbjct: 153 ISIAKKSGGNLIEITENTIEHLSQAIQTKEEIHTMIA-AKQMEKKIMSVMPYFILLYVRI 211
Query: 315 IGPAILSII 323
P I+
Sbjct: 212 ANPGYFDIL 220
>gi|163801323|ref|ZP_02195222.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
gi|159174812|gb|EDP59612.1| Flp pilus assembly protein TadB [Vibrio sp. AND4]
Length = 289
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/210 (13%), Positives = 78/210 (37%), Gaps = 5/210 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIF-LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
+ S+ L I + + + + + ++ + + +IL+G V
Sbjct: 40 YLSQNILVIFFEIYGLGTFVMHCGVILFYVSFMFFVSSTFDLSYLSTLILVGIVVSLGCF 99
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ K + + + +L ++ + SG +I ++ + G+ + E
Sbjct: 100 SILKEYHAKLSNYFEDKFAFSLRMISRNLISGRTIAASIESASRHTMGK---IRIEFERI 156
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
I +++ + A N + + S + G SI DSL L + + +++
Sbjct: 157 IKQINAGNTLEEALTTGENIYPYKGYTVFSANVKMSLKRGGSIKDSLDELAQDLVASQVI 216
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + + + I+ LP ++L+++
Sbjct: 217 RKKTLSLTSESR-GAAKILAVLPFIMLLVL 245
>gi|167587312|ref|ZP_02379700.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 261
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 7/178 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + G + W+ + + +R+ I R P LD ++ V G S+ A +
Sbjct: 57 GLLGSVAALAAGLALLAFWLVSRIHRRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAA- 115
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL + + L A + L S RYG
Sbjct: 116 --LLTTEAPLRGCLDVVSRMLRTGVEIDRAMVHIAKVYHTREFELVGSVLRLSVRYGGRA 173
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
L + R E E A S +L+ ++ LP+ ++ P+ LS +
Sbjct: 174 DVMLERMAVFMRDLEQAERELVAMSSETRLSA-WVLVMLPIAIGGFVIATNPSYLSSM 230
>gi|121599706|ref|YP_993002.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
gi|124386517|ref|YP_001026334.1| hypothetical protein BMA10229_A0332 [Burkholderia mallei NCTC
10229]
gi|126449976|ref|YP_001080392.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|121228516|gb|ABM51034.1| Flp pilus assembly protein TadB [Burkholderia mallei SAVP1]
gi|124294537|gb|ABN03806.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126242846|gb|ABO05939.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
Length = 331
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 142 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 198
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 199 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 258
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 259 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 298
>gi|53719427|ref|YP_108413.1| hypothetical protein BPSL1814 [Burkholderia pseudomallei K96243]
gi|76811973|ref|YP_333440.1| hypothetical protein BURPS1710b_2045 [Burkholderia pseudomallei
1710b]
gi|126441337|ref|YP_001058912.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134282297|ref|ZP_01769002.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|217421505|ref|ZP_03453009.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|226196396|ref|ZP_03791978.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237812169|ref|YP_002896620.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254259104|ref|ZP_04950158.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|52209841|emb|CAH35813.1| putative membrane protein [Burkholderia pseudomallei K96243]
gi|76581426|gb|ABA50901.1| putative membrane protein [Burkholderia pseudomallei 1710b]
gi|126220830|gb|ABN84336.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|134246335|gb|EBA46424.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|217395247|gb|EEC35265.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|225931613|gb|EEH27618.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|237506496|gb|ACQ98814.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254217793|gb|EET07177.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 331
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 142 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 198
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 199 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 258
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 259 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 298
>gi|209545601|ref|YP_002277830.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533278|gb|ACI53215.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 317
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/310 (13%), Positives = 103/310 (33%), Gaps = 32/310 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V ++ ++IFSL+ +VV+ S E+R E R + +
Sbjct: 4 IVLLSLLMTIFSLVTSVVLLYRRSMATERREGRFEAELGAYRLRALPVTASGRLDHLRAA 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ V ++ AG + ++ +
Sbjct: 64 LNLSAVTARVFGFRPESYAH--------MQAGMKR---------------VVGFSAILPV 100
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ LL ++L +G + + ++ + + + PDAL +++ +
Sbjct: 101 VGLVPGLLLIGPASPALLLVLWVILG----RLAFRIVDRRYAAKLFQQLPDALGMIVRSL 156
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
GI + +AL V + P ++E + +++ + N RT + R
Sbjct: 157 RVGIPLSRALIIVGQ---EAEYPTADEFRMISQDVAVGKSLGDTLHNLAERTGLQEYRFF 213
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--IL 312
+ + G ++ D L R A + +++ ++ + I+
Sbjct: 214 ATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASEARMSCYVLGGIPFAIGGIM 273
Query: 313 VIIGPAILSI 322
II P +++
Sbjct: 274 SIINPDYMAV 283
>gi|126452248|ref|YP_001066154.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242314755|ref|ZP_04813771.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|126225890|gb|ABN89430.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242137994|gb|EES24396.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
Length = 331
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 142 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 198
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 199 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 258
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 259 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 298
>gi|311899777|dbj|BAJ32185.1| hypothetical protein KSE_64260 [Kitasatospora setae KM-6054]
Length = 295
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 4/216 (1%)
Query: 111 YSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
S + +L+ + L G + + P + + L+ + + P ++
Sbjct: 82 RSPARFMAHKLLFSFLGFALPGYLTVLAELIGDGLPLAVPLLVGPLLAGLFWFIPDGIVA 141
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ ++ L+L+ + + +ALRR A G +
Sbjct: 142 GEAKEARTEYLHGIAAYLELVALERAADCGPAEALRRAASVGRGT--VFRKIRDALERAA 199
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + + +++ + S G ++ D+LR R E L E
Sbjct: 200 TDRLPPWDGLDALAQELGLTPLQDVADIMRISGVDGAAVYDTLRARAKSLRGELLSEELA 259
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
KA + ++ P L ++ ++I PAI ++ T
Sbjct: 260 KANTDSERMVAPGSALTL-LMTVLIAFPAIYQMLST 294
>gi|172060498|ref|YP_001808150.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
gi|171993015|gb|ACB63934.1| type II secretion system protein [Burkholderia ambifaria MC40-6]
Length = 330
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 7/178 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A + G +W+++ +Q+R+ I R P LD ++ V G S+ A +
Sbjct: 126 GALACLAALVCGSAILGIWLTSRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQAA- 184
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL + L A + + L S +YG
Sbjct: 185 --LLTTEEPLRGCLDHVSRMLRTGVEIDRAMLHIAKIYRTQEFELLGSVLRLSVKYGGRA 242
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
L + R E E A S +L+ ++ LP+ +V+ P L +
Sbjct: 243 DVMLERMAVFMRDLEQAERELTAMSAETRLSA-FVLVMLPIGIGSFVVMTNPKYLEGM 299
>gi|254198194|ref|ZP_04904616.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|169654935|gb|EDS87628.1| type II secretion system protein [Burkholderia pseudomallei S13]
Length = 331
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 142 VYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 198
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 199 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 258
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ ++++
Sbjct: 259 MKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 298
>gi|167719678|ref|ZP_02402914.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 205
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 5/168 (2%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ A L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 8 LAAGAARAVYRILIGRFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPV 64
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
L + + E R Q+ L+ G ++ ++L L
Sbjct: 65 RATFRAMGDALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGI 124
Query: 279 TRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
R+ R + + +A + ++ +I + F L ++ ++++
Sbjct: 125 IRTRRDIRMKTRALTAEGRIASKIIAAVPFAIAGFLFVVNRPYVNLLF 172
>gi|317472141|ref|ZP_07931473.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
gi|316900545|gb|EFV22527.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
Length = 374
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 3/178 (1%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
IL + + K +P + ++ + +G++I A+
Sbjct: 196 LPALAAIGILCLVLLWYTEEERQKQKKAKAVKETMEEYPIIISRFVLLLGAGMTIQGAVH 255
Query: 206 RVAEDIGGQSV-PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ + + +++ ++ A + Q+ C + + L QS
Sbjct: 256 SIGSSFDRDHPKFVYRQFQQADKKIALGMSQAQALRELGSSIQLPCYKKLSVLLSQSLLR 315
Query: 265 GT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
GT + L +E SER A +K KL +PMI+ L V++ +++ PA LS
Sbjct: 316 GTRDLLSRLEEEETEAFSERKETARRKGEEASTKLLMPMIL-MLIVILTLLMVPAFLS 372
>gi|260775649|ref|ZP_05884545.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608065|gb|EEX34234.1| flp pilus assembly protein TadB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 306
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 79/235 (33%), Gaps = 3/235 (1%)
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+R R + K + + + + ++ + + S I +L
Sbjct: 21 QARRRRQYFKDVSHSSVSQLVGDVGQAIDLRTLEETSWLQQGKSRVISSYYQLGSQPALK 80
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ II + + RV V + + ++ L + + + A+PDAL
Sbjct: 81 VIAIIILGLVVSIYVNQTYFRVHQVAFSIGINLIFMLLGMNWLQAREKQHFEEAFPDALT 140
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L V +G + Q+ V + G P+ +E L + F R
Sbjct: 141 MLASAVSAGEGLMQSFIFVGRTLDG---PVGKEFKKMGDRLQMGESTNAVFSKSCQRFPY 197
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + G I + + L S R +E +K A + +++ ++
Sbjct: 198 PSFHFFVITMRANIDRGGQIKEVVAKLNRVMFSARAIEKKKYALTSEARVSAKIV 252
>gi|148642531|ref|YP_001273044.1| type II secretion system protein F, GspF [Methanobrevibacter
smithii ATCC 35061]
gi|148551548|gb|ABQ86676.1| type II secretion system protein F, GspF [Methanobrevibacter
smithii ATCC 35061]
Length = 306
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 81/205 (39%), Gaps = 4/205 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +++ I + F + + + + ++ +KR + I+++ P
Sbjct: 41 FLAILIFFILFADIVIGIFIVFFKISDLSLFLPLLIIPFVATYVFIKQEKRAAEIEKSAP 100
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D L L ++ G+S + A+ +++ G PL +E IAE+ N A+
Sbjct: 101 DFLRQLSAMLKVGLSFENAMEDMSKYGEG---PLYDETRRAIAEIKVGRNFDDAWMAMAQ 157
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + ++ S + G+SI + + + + R ++ E+K++ + + + +I
Sbjct: 158 RLKSKELERIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVMMAVMFL-IIS 216
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+ + + + +
Sbjct: 217 AVIASPFALGMVSVYSQFMQSFGKQ 241
>gi|167589558|ref|ZP_02381946.1| type II secretion system protein [Burkholderia ubonensis Bu]
Length = 235
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 7/182 (3%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ + A L+++ + A+PDA+DL++ V +GI + QA+
Sbjct: 26 PPGFVRPFVYAGLPLVALRSSYLALIRRFRLRFLEAFPDAIDLIVRAVRAGIPVTQAIST 85
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
V + P+ L + + +R + T L+ G
Sbjct: 86 VG---DSAAEPVRSTFRTMGDSLRVGADLKDVLTQAADRLMIADFSFFTVYLLLQRETGG 142
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA---ILSII 323
S+G++L L S RS R + + +A + ++T II +P +++ + + ++
Sbjct: 143 SLGETLDELSSIIRSRRDIRLKSRALTAEGRIT-TNIISAVPFVMIGALFLVNRPYIMLL 201
Query: 324 DT 325
T
Sbjct: 202 FT 203
>gi|240143494|ref|ZP_04742095.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257204528|gb|EEV02813.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
Length = 245
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 74/193 (38%), Gaps = 4/193 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + + F ++L+ V + S + + +R + + DA+
Sbjct: 14 LGCLAAGTAVAAAIAWLFYRSWYGMVLVIPVNYLIVSYYKNKKRDERAKKLMIEFRDAIQ 73
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G SI+ A + +I +++E++ AE+ N + + R
Sbjct: 74 AVAAALLAGYSIEHAWKEAEREIMDLYGKEAMITKELIQMNAEIKLNRNVEEILHDLAVR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ +++ + + R G +R + ++ +E E G KL I+
Sbjct: 134 SGVEEIQSFAEIFGFAKRSGGDFPQIIRTTAARISAKIEVEREVDTVIAGKKLEGK-IMS 192
Query: 306 FLPVLILVIIGPA 318
+P IL + A
Sbjct: 193 VMPFFILAYLNLA 205
>gi|83719955|ref|YP_442976.1| pilus assembly protein [Burkholderia thailandensis E264]
gi|257139200|ref|ZP_05587462.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
gi|83653780|gb|ABC37843.1| pilus assembly protein, putative [Burkholderia thailandensis E264]
Length = 330
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/309 (13%), Positives = 94/309 (30%), Gaps = 19/309 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + F+++ A I +R + R + ++ A +
Sbjct: 6 VVAVGAFFAIVVAGFIARALRDLARRRPAARVRSRVDALRDARAHVRTPPARASRVGLPL 65
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + AAG ++ + V+ + + L + +
Sbjct: 66 FVRTHGDGEGGPLRAWLRVRGERVRTAAGGGGVRAIALASVLAALAGFVGASLAGVAPWL 125
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L AV L+ + + +PDALDL++ V +G
Sbjct: 126 RIALAAALAAGVARAV--------------YRMLIARFKQRFLSVFPDALDLIIRAVRAG 171
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
I + QA+ P+ L + + E R Q+
Sbjct: 172 IPVAQAIGTAGR---ESEEPVRATFRAMGDALRVGADMKDVLEQQAARLQLADFSFFGVC 228
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVII 315
L G ++ ++L L R+ R + + +A + ++ +I + F L ++
Sbjct: 229 LTLQRETGGNLTETLENLSGIIRARRDIRMKTRALTAEGRIASKIIAAVPFAIAAFLFVV 288
Query: 316 GPAILSIID 324
+ ++
Sbjct: 289 NRPYIELLF 297
>gi|310640814|ref|YP_003945572.1| type ii secretion system f domain protein [Paenibacillus polymyxa
SC2]
gi|309245764|gb|ADO55331.1| Type II secretion system F domain protein [Paenibacillus polymyxa
SC2]
Length = 292
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED-IGGQSVPLSEEMLLTI 226
+ VQKR I P+ L +++ V +G ++ +AL E PL E+L T+
Sbjct: 135 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTVHPLYRELLQTV 194
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLM 285
E + Q AFE+ R + V T ++ + R G +LR L S+R
Sbjct: 195 GEWESGYSFQQAFEHLSKRCGIQEVTIFTTTVLLNMRRGGSDFVMALRELSQTLWSKRTS 254
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + KL PM + L V++LV PA++ +
Sbjct: 255 ISRTRGEQASSKLVFPMALILLTVIVLVG-APALMMM 290
>gi|197302281|ref|ZP_03167340.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
29176]
gi|197298712|gb|EDY33253.1| hypothetical protein RUMLAC_01008 [Ruminococcus lactaris ATCC
29176]
Length = 197
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 17/174 (9%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEML 223
W+ + K++ + + D++ ++ +++G S + A+R D+ + +E
Sbjct: 4 WLEEMTDKKEEEFRVQFKDSIQIMAGALKAGYSAENAIRETCHDLKPMYKSESRIIKEYE 63
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ I +L F + + V N + + G ++ V +
Sbjct: 64 IMIRKLKIHIPVGQVLSEFAENVEQEDVDNFVTVFTTAQKSGGDSIVIIKDAVKVISEKM 123
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII-------------GPAILSIID 324
E E + KL I+ +P ++ + PA + ++
Sbjct: 124 ETEKEIQTMIASKKLEFE-IMSMIPFGMIGYMKLTFGDFLKVLYGNPAGIIVMS 176
>gi|297193033|ref|ZP_06910431.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197719837|gb|EDY63745.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 262
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 15/202 (7%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR---------QSSIKRAWP 184
W + F + +G V W ++ + R P
Sbjct: 63 WAAPLGVAVVGWFLIGGATGGAVGLVAAVGVRRWQRGREKRTGAGTPAADARKEAARQLP 122
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
A DL+ C+ +G S +A V E +GG P+ + T A+L A+ F
Sbjct: 123 LAADLMAACISAGASPREAAEAVGESLGG---PVGAGLARTAAQLRLGAEPSPAWGCFGE 179
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + L ++D G D + L R+ER + +T P+ +
Sbjct: 180 ---IPGAEPLARCLERADSAGAPAADPVSRLAGRLRAERARAVAGRGRRAQVLITAPVGL 236
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
FLP + V + P ++ + +
Sbjct: 237 CFLPAFLAVGVAPVVIGLAGGL 258
>gi|91783014|ref|YP_558220.1| putative tight adherence TadB related transmembrane protein
[Burkholderia xenovorans LB400]
gi|91686968|gb|ABE30168.1| Putative tight adherence TadB related transmembrane protein
[Burkholderia xenovorans LB400]
Length = 359
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 14/219 (6%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + + + + ++ ++ + + + A ++
Sbjct: 120 RHALARAGIANAKGPAALAGTLVLLLCGWAALVGGALAAGVALCACVMFF-------YFL 172
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ V KR+ I R P LD ++ + G S+ A + + PL E +
Sbjct: 173 LTLRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAA---LQTTEAPLRECLDYVSR 229
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L A + + L S +YG L + S R E
Sbjct: 230 MLRTGVEIDRALSQVALIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHAER 289
Query: 288 EKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
E A S +L+ ++ LPV L++ P + +
Sbjct: 290 ELVAMSAETRLSS-WVLAMLPVGIGGFLILSNPKYFASM 327
>gi|258620799|ref|ZP_05715834.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
gi|258586997|gb|EEW11711.1| Flp pilus assembly protein TadB [Vibrio mimicus VM573]
Length = 303
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 5/208 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + + P + L++ + + F + +L+
Sbjct: 58 RIKRVAREFTQLLNPNPALKLLMFFLISAIAVYFINDFFLQQTYWKVLLFLQPLLFVVFI 117
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I K + + +PDAL++L + +G SI A V + + + E
Sbjct: 118 IKLRAHK-TAKFQSNFPDALNILSGALSAGQSIVHAFEYVGKQLDN---DVGYEFKFMAE 173
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L + + + G + + + + R ++
Sbjct: 174 RLLIGEDPDEVLARSAASFPYVEYFFFASTIRINLSRGGQLKEVINRINRIMFDARAVDK 233
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
+K A + + + II LPV+ L+I+
Sbjct: 234 KKNALTSEARSSAK-IIAALPVIFLLIL 260
>gi|221070077|ref|ZP_03546182.1| type II secretion system protein [Comamonas testosteroni KF-1]
gi|220715100|gb|EED70468.1| type II secretion system protein [Comamonas testosteroni KF-1]
Length = 322
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 12/213 (5%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
+ AG+ L RL + LI G V I ++
Sbjct: 76 KKAGWPVPAILLGTASARLFYGGLVLIAATFLAVGLAVGWLVASAALVLLGIGFFFL--- 132
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
+ QK ++ + + P LD + V G S+ A + A PL M
Sbjct: 133 -----LYARAQKFRARLTQQLPGFLDNTVRLVTIGNSVQAAFQMAAASTKD---PLQSVM 184
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ + + A + +T++D + L S RYG + L + + R
Sbjct: 185 EKAASLARAGMDLENAVAHVARQTRLDELHLLAAILRISVRYGGRVDLLLERVANFMRDR 244
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E + A + +++ ++ LPV + +I
Sbjct: 245 EQAEQDLSAMTAEIRMSA-WVLSLLPVAVCCLI 276
>gi|315649138|ref|ZP_07902229.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
gi|315275454|gb|EFU38811.1| Type II secretion system F domain protein [Paenibacillus vortex
V453]
Length = 285
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 4/173 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+I + Y F + +L+G G P W ++ +R+ ++ + AL
Sbjct: 54 AACVILGGVLFSFIGYLFYHHLILSLLLGAGGLMIPKFWRRFMLDRRRKTLNLHFKQALY 113
Query: 189 LLLICVESGISIDQALRRVAEDI----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
L + +G S++ R +D+ G S L E+ + ++ L + +VA ++F
Sbjct: 114 SLSSSLSAGRSVENGFRDAVQDLLLLDPGASSDLIFELKVIVSRLEYGEPIEVALQDFAR 173
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
R M+ + N R G + + +R S + ++ E +
Sbjct: 174 RAGMEDITNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLDIQQEISVMIAQKR 226
>gi|91774310|ref|YP_567002.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91713325|gb|ABE53252.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 647
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 69/187 (36%), Gaps = 4/187 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
I + + + ++ + P V +R S++ +P+ L+ L
Sbjct: 392 LIGFKLHNMNIEGAMVLDDYVMFATLLVFVPFVIFYESKARRIRSMEDEFPEFLNRLASI 451
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+GI + A+ VA+ + L E+ LS+ + F F +R +
Sbjct: 452 NEAGILLIDAINMVAQ---TKIGVLQSEVRRMQKGLSWGQDLSSVFMEFESRVKTTMNSR 508
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L+++ + I L + + + ++++ + L + I F + + I+
Sbjct: 509 IITLLVKASESTSDIIGVLHIAAKDA-ELQQNLRKERSTEMAVYLFIVYISFAVFLFIIY 567
Query: 314 IIGPAIL 320
++ +
Sbjct: 568 VLTAYFI 574
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 65/180 (36%), Gaps = 4/180 (2%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG-I 198
L + + + ++ F + RQS I ++ P + + +SG +
Sbjct: 87 VLPAFSVIFSLILFVGTAWITFRLFLHYPLIKANIRQSYIDQSLPHGVAYMYALTKSGGV 146
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQA 257
++ A R ++E ++E + ++ + + A N + T ++
Sbjct: 147 TVHDAFRSLSEHSH-VYGLAADEFGYIVRDMDYFGMDVLSAIRNCSSTTSSTNLKAFLDG 205
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL-PVLILVIIG 316
++ G + LR + + + + LG + +F + P+ +++I+
Sbjct: 206 ILFVISSGGDLNSYLRSKTDQFHLDATKQQKTFLEMLGVLAEAYVAVFVVGPIFMIIILV 265
>gi|331092045|ref|ZP_08340876.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402246|gb|EGG81817.1| hypothetical protein HMPREF9477_01519 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 403
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 5/175 (2%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+ K +Y F + + + ++R+ + +P+ + L + +
Sbjct: 211 IIWKKTTDYTFLYILVLGGVCTVAIYTREKEEKKKREKQRREQMIIDYPEIISQLSLLIG 270
Query: 196 SGISIDQALRRVAEDIGG----QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
SG++I A +++ + EE+ + E+ ++E F R +
Sbjct: 271 SGMTIKNAWKKILFHYENRKKKEVRFAYEEIYCAMREMQGGMTESESYERFGKRCGISSY 330
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L Q+ R G + + L E R A++ G KL +PM +
Sbjct: 331 MKLGTTLSQNVRKGAKGLTELLEKETKEALETRKQRAKQYGEKAGTKLLLPMSMM 385
>gi|162147494|ref|YP_001601955.1| type II secretion system protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786071|emb|CAP55653.1| putative type II secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 319
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/310 (14%), Positives = 103/310 (33%), Gaps = 32/310 (10%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
V ++ ++IFSL+ +VV+ S E+R E R + +
Sbjct: 6 IVLLSLLMTIFSLVTSVVLLYRRSMATERREGRFEAELGAYRLRALPVTASGRLDHLRAA 65
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ ++ V ++ AG + ++ +
Sbjct: 66 LNLSAVTARVFGFRPESYAH--------MQAGMKR---------------VVGFSAILPV 102
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ LL ++L +G + + ++ + + + PDAL +++ +
Sbjct: 103 VGLVPGLLLIGPASPALLLVLWVILG----RLAFRIVDRRYAAKLFQQLPDALGMIVRSL 158
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
GI + +AL V + P ++E + +++ N N RT + R
Sbjct: 159 RVGIPLSRALIIVGQ---EAEYPTADEFRMISQDVAVGKNLGDTLHNLAERTGLQEYRFF 215
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--IL 312
+ + G ++ D L R A + +++ ++ + I+
Sbjct: 216 ATIMALQAQTGGTLADVLASFADMIRQRIAARKRGHALASEARMSCYVLGGIPFAIGGIM 275
Query: 313 VIIGPAILSI 322
II P +++
Sbjct: 276 SIINPDYMAV 285
>gi|242399928|ref|YP_002995353.1| Bacterial type II secretion system protein F domain, putative
[Thermococcus sibiricus MM 739]
gi|242266322|gb|ACS91004.1| Bacterial type II secretion system protein F domain, putative
[Thermococcus sibiricus MM 739]
Length = 308
Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 89/211 (42%), Gaps = 4/211 (1%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ Y+L + + + FL++ ++ ++ +++ A+ + V V
Sbjct: 22 WTRRYNLFLYSAGISFLAVEFLLVSMLLGILTAIVVFLIPSVKLYALPVFFIVFLGIAWV 81
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + K+ ++ PDA + + +G+S +AL E + L++E T+
Sbjct: 82 YPYWKLAKKIEDMENNIPDAFFYIASSLRAGVSFSEALE---EASTARFGALTDEFKRTV 138
Query: 227 AELSFLPNRQVAFENFYNRTQMDCV-RNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+E+ + A + F R + + +T ++++ G + D L + ++ R +
Sbjct: 139 SEIKRGRSTYEALKAFALRNRRSIIIYRSTMIILEAYERGAPMADVLVAVANDVREILRI 198
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ E+KA++ + + FL IL I+
Sbjct: 199 KKERKASTGMQAMFFIIASGFLGPAILGIVS 229
>gi|21227039|ref|NP_632961.1| putative flagella-like protein J [Methanosarcina mazei Go1]
gi|20905361|gb|AAM30633.1| putative flagella related protein J [Methanosarcina mazei Go1]
Length = 649
Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 18/288 (6%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQ 64
D T+L V + A+ ++I+ V + L + + ++ R
Sbjct: 283 MIDNGGPTQLYVLVYGAIPFGTMIFLVFLDMLTGDAEKMPEEQISAIRPDSFSDVRVKPL 342
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ L+ + F +K++ ++ I + + V
Sbjct: 343 TEVDEELLQKME------FFEKVSRVKRVLLHPIRAMIDR---------PVYAFVVSAPV 387
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + G + + + P + L +R I+ P
Sbjct: 388 ALGYFVSAYMEHGPYYGGFVETASTLDDYLYATLLILFIPYIIFHELEVRRIRQIEDQVP 447
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L L +GI + A+ A+ L E+ T+A++ + N A + F
Sbjct: 448 EFLKRLASINGTGILLADAIAITAQ---SNMGRLKSEIKRTVADIRWNSNLVDAMKRFEA 504
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
R + + R + + ++ I + + + E+ ++ E+ A
Sbjct: 505 RIRTNMTRRSLSLIAKASESTGDIHQVISTVADDADIEKNLKKERSAE 552
Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 2/187 (1%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ +I + + + R+ +I + P A L + G
Sbjct: 101 LPFILTVIGGIILFSMISALTYGLIMAYPPMKADSRKRAINASMPHATAFLYVLQRGGGM 160
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQAL 258
+ + + E + ++ + + Q + + +RT + ++ L
Sbjct: 161 TIYDIMKSLSKHSHLYGTTAREFGNIVRDIEYFGKDLQDSLWDSADRTPSEQFKDLVDGL 220
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
I G I L+ +S E ++ +LG V + +F + L L++I
Sbjct: 221 ISIVSSGGDITLYLKNKTDLYKSNANKEHKRFLETLGLLAEVYITVFVVGPLFLMVIL-V 279
Query: 319 ILSIIDT 325
++++ID
Sbjct: 280 VMNMIDN 286
>gi|225375136|ref|ZP_03752357.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
16841]
gi|225213010|gb|EEG95364.1| hypothetical protein ROSEINA2194_00760 [Roseburia inulinivorans DSM
16841]
Length = 220
Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/185 (12%), Positives = 65/185 (35%), Gaps = 4/185 (2%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
L + V ++ + ++++ ++ + DA+ + +
Sbjct: 20 GILAGMLAAWILYQSVYGMVTVFIFIPLCIQREKKKRREQQKETLLLQFRDAMQSVAAAL 79
Query: 195 ESGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++G S++ A R +++ GQ E+ + + F R+ + +
Sbjct: 80 QAGYSMENAWRESEKEMTELYGQDGIFVGELHQINQAVGMNQPIEKLLYEFALRSDCEDI 139
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+N + + + R G + + + +E E + + K I+ +PV I
Sbjct: 140 QNFSDVFLFAKRSGGDFHKIIATTIEHISDKIEVEREVQT-VISAKKMEQKIMNVIPVFI 198
Query: 312 LVIIG 316
++ +
Sbjct: 199 ILYLN 203
>gi|222445971|ref|ZP_03608486.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
DSM 2375]
gi|222435536|gb|EEE42701.1| hypothetical protein METSMIALI_01619 [Methanobrevibacter smithii
DSM 2375]
Length = 306
Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 81/205 (39%), Gaps = 4/205 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +++ I + F + + + + ++ +KR + I+++ P
Sbjct: 41 FLAILIFFILFADIVIGIFIVFFKISDLSLFLPLLIIPFVATYVFIKQEKRAAEIEKSAP 100
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D L L ++ G+S + A+ +++ G PL +E IAE+ N A+
Sbjct: 101 DFLRQLSAMLKVGLSFENAMEDMSKYGEG---PLYDETRRAIAEIKVGRNFDDAWMAMAQ 157
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + ++ S + G+SI + + + + R ++ E+K++ + + + +I
Sbjct: 158 RLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVMMAVMFL-IIS 216
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+ + + + +
Sbjct: 217 AVVASPFALGMVSVYSQFMQSFGKQ 241
>gi|134282399|ref|ZP_01769104.1| type II secretion system protein [Burkholderia pseudomallei 305]
gi|134246437|gb|EBA46526.1| type II secretion system protein [Burkholderia pseudomallei 305]
Length = 335
Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 145 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 201
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 202 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 261
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 262 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 304
>gi|53719506|ref|YP_108492.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei K96243]
gi|76810037|ref|YP_333344.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei 1710b]
gi|126438493|ref|YP_001058810.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126453046|ref|YP_001066061.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|242314637|ref|ZP_04813653.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254188636|ref|ZP_04895147.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|254197238|ref|ZP_04903660.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|254259377|ref|ZP_04950431.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
gi|254297790|ref|ZP_04965243.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|52209920|emb|CAH35892.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei K96243]
gi|76579490|gb|ABA48965.1| putative fimbriae-related outer membrane protein [Burkholderia
pseudomallei 1710b]
gi|126217986|gb|ABN81492.1| type II secretion system protein [Burkholderia pseudomallei 668]
gi|126226688|gb|ABN90228.1| type II secretion system protein [Burkholderia pseudomallei 1106a]
gi|157807876|gb|EDO85046.1| type II secretion system protein [Burkholderia pseudomallei 406e]
gi|157936315|gb|EDO91985.1| type II secretion system protein [Burkholderia pseudomallei Pasteur
52237]
gi|169653979|gb|EDS86672.1| type II secretion system protein [Burkholderia pseudomallei S13]
gi|242137876|gb|EES24278.1| type II secretion system protein [Burkholderia pseudomallei 1106b]
gi|254218066|gb|EET07450.1| type II secretion system protein [Burkholderia pseudomallei 1710a]
Length = 335
Score = 70.2 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 145 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 201
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 202 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 261
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 262 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 304
>gi|302329928|gb|ADL20122.1| Putative type II secretion system protein [Corynebacterium
pseudotuberculosis 1002]
gi|308275612|gb|ADO25511.1| Putative type II secretion system protein [Corynebacterium
pseudotuberculosis I19]
Length = 217
Score = 70.2 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 5/153 (3%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE--MLLTIAEL 229
+ S R LDL CV+SG++ Q+ VA L L
Sbjct: 62 ADRLSSDFLRKSAYQLDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMML 121
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A+++ + + S+R G ++ ++ L + R+ +
Sbjct: 122 EMGMPAERAWQSLAE---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLA 178
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+A G + +P+ + FLP L+ + P ++S+
Sbjct: 179 RAERAGVLIALPLTVCFLPAFFLLGLAPVVISL 211
>gi|330959998|gb|EGH60258.1| hypothetical protein PMA4326_15684 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 294
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L + +++S + R + P LD
Sbjct: 71 VGLALTLYALVVLIGYGLGGGIGAVCALLGVPLMLRLFVSWRYRVRVRRMIEQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 SVRSLKSGRTLSDAVLYG---IAAADQPLKDGMSRIERNVQLGVSLPDAARDFAELYESD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LPV
Sbjct: 188 EFHLFALGLRVNHRYGGNASELMENLIRLIREREQAGRQLRAMTGETRMTA-LVLGLLPV 246
Query: 310 LIL---VIIGPAIL 320
+ +++ P L
Sbjct: 247 GMAGYFMVVNPDYL 260
>gi|270487716|ref|ZP_06204790.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
gi|270336220|gb|EFA46997.1| type II secretion system F domain protein [Yersinia pestis KIM D27]
Length = 217
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 4/164 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + K K+ +P+ L ++ + SG SI+Q L R ++I G PL +E+ L
Sbjct: 29 LQLKYARSKHYLLFKQDFPEVLLMINMAASSGASINQVLERCGKEIRG---PLGQELGLI 85
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L+ + F + Y R ++ + + G + + + L ++
Sbjct: 86 CRRLNLGETPETVFYDAYERFHYPEFYFLVTIILLNIQQGGQLKELITRLSQIITKKKTT 145
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E +K + +++V II +P+L ++ + I+ + H
Sbjct: 146 EQKKAVMTAQIRMSV-NIISIMPMLFSFLLYLLDPTTIEFVWQH 188
>gi|325678292|ref|ZP_08157920.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
gi|324110055|gb|EGC04243.1| type II secretion system protein F domain protein [Ruminococcus
albus 8]
Length = 303
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 79/209 (37%), Gaps = 12/209 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYP-------FQLRVGAVILIGYVGFCAPSVWIS 169
L+ +V I + + + G + + + + G V F P + S
Sbjct: 55 LLFTVVSFIAGVAVAYLMYGGLGSDADGNPRPITHVLNIVICTAVGFGAVKFIIPLLESS 114
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTI 226
+++R I+R + D LD L V SG + +A ED+ Q + +E+ L +
Sbjct: 115 FKIKRRN-DIRRQFMDLLDALAASVASGSNAIKAFEAAKEDLVLQYGEDSIIVQELTLIL 173
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + +F R+ + + + Q S R G +R S+ +E
Sbjct: 174 DGQKNFIDISASLIDFGKRSGIKEIESFAQVFELSHRKGGDFSKVIRDSYEILYSKINIE 233
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
E + + + I+ +P +++ ++
Sbjct: 234 MEIETKIAATRNEL-NIMLAMPFILVGMM 261
>gi|238923483|ref|YP_002936999.1| hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
gi|238875158|gb|ACR74865.1| Hypothetical protein EUBREC_1103 [Eubacterium rectale ATCC 33656]
Length = 286
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/158 (14%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP--- 217
P I ++++K+++ + + + D L+ L + +G ++ + R V +D+ Q
Sbjct: 89 LYIPVR-IQSIIKKQKNQLNKQFRDMLEALSTSLGAGKNVIDSFRSVYDDMKMQYEDGAY 147
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ E+ L ++ + + + +F R+ + + + + R G +I D++R
Sbjct: 148 IISELELLLSGMDNNIDIEDLLLDFGERSGNEDIESFAKVFQICYRKGGNIKDTVRSTYE 207
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + + + K T ++ +P+ ++ ++
Sbjct: 208 ILNDKMEIAEDIETVVTANK-TEQNVMLIMPIGLIGMM 244
>gi|257483344|ref|ZP_05637385.1| type II secretion system protein F domain [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298488956|ref|ZP_07006979.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156454|gb|EFH97551.1| Flp pilus assembly protein TadB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322733|gb|EFW78826.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330482|gb|EFW86461.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330887978|gb|EGH20639.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
gi|330989173|gb|EGH87276.1| type II secretion system protein F domain [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012563|gb|EGH92619.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 294
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 68/194 (35%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L + +++S + R + + P LD
Sbjct: 71 MGLALSLYALLILIGYGLGGGIGAVSALLAVPLTLRLFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVLHG---IEATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LPV
Sbjct: 188 EFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-LVLALLPV 246
Query: 310 LIL---VIIGPAIL 320
+ + + P+ L
Sbjct: 247 GMAGYFLTVNPSYL 260
>gi|71733377|ref|YP_276553.1| type II secretion system protein F domain [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553930|gb|AAZ33141.1| type II secretion system protein F domain protein [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 294
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 69/194 (35%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L + +++S + R + + P LD
Sbjct: 71 MGLALSLYALLILIGYGLGGGIGAVSALLAVPLTLRLFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ + I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVL---QGIEATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LPV
Sbjct: 188 EFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-LVLALLPV 246
Query: 310 LIL---VIIGPAIL 320
+ + + P+ L
Sbjct: 247 GMAGYFLTVNPSYL 260
>gi|309777430|ref|ZP_07672388.1| putative bacterial type II secretion system protein F domain
protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914826|gb|EFP60608.1| putative bacterial type II secretion system protein F domain
protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 266
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 80/206 (38%), Gaps = 8/206 (3%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
I + ++ +I ++ + + + GF A V+ ++ +
Sbjct: 26 RIYHLSKIEKAGACMIGMLLGVICGHIFFANILMDFLTGCL----TGFIAVPVFRNHQNE 81
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELS 230
KR + R + D L+ L + +G+++ +++ + Q + +E+ + +
Sbjct: 82 KRSIELSRQFKDMLENLAASISAGVNVPDSIKSAYHSMQQQYDENAYIVKELHNILIGFN 141
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
N + +F NR+ + + + S R G ++ + +R + +E E K
Sbjct: 142 NNINIETMLLDFGNRSGNEDIISFANTFETSYRKGGNMKEIIRNTYEILNDKITIEMEVK 201
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIG 316
+ + +++ +PVL +++
Sbjct: 202 TMIAASRNELNIMMC-MPVLFSLVLN 226
>gi|317500896|ref|ZP_07959107.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897694|gb|EFV19754.1| hypothetical protein HMPREF1026_01050 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 205
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/165 (14%), Positives = 61/165 (36%), Gaps = 4/165 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLL 224
+ +L +KR+ + + +A+ + +++G S++ A+R +D+ + +E
Sbjct: 13 LRDLCRKREKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ +L E F R + + + + G +R V +
Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E E + KL I+ +P I++ + + + ++
Sbjct: 133 TEQEIQTMFASKKLEFE-IMCAVPFFIILYMKLTFGEFLSVLYEN 176
>gi|284161834|ref|YP_003400457.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
gi|284011831|gb|ADB57784.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
Length = 617
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 88/236 (37%), Gaps = 7/236 (2%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
+ LK + I LR + + V+ + + I+F I G+
Sbjct: 319 EFKILKKNIKMYEIKKVLRNPIQVLKIKPYYVFVLSIPLGILFAIYGL---SVVGFYPSI 375
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + + + P V + + + R P + L ESG+ I +A+
Sbjct: 376 GWFFSFDDYLFVSIILTLLPFVILHEIRVRSVGRYLRYIPIFFNRLATINESGVPIYRAI 435
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+A+ + PL +E+ ++ + + AF F NR ++ V L ++ +
Sbjct: 436 SILAK---TDTSPLRDEIRKIKTDIDWGLDLSRAFVRFANRIRVFDVTRVVTMLNEAMKT 492
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ + L + E L++ E+ S+ + + FF+ + I II L
Sbjct: 493 TGNLTEVLVISAKEASRSELIKRERY-YSMMTYTIIIYVAFFVFIGITYIISSMFL 547
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 2/173 (1%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + + + F A ++ S +V R+S I R A+ + G I +
Sbjct: 94 FSILMALALSFAAYELTFSAFKIYPSIVVGDRKSKIDRMLHHAVAFMHALSIGGTDIYRI 153
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+ +AE +S E+ + ++ + + + A N + + + LI
Sbjct: 154 FKTLAEH-QDVYGEVSREVSRIVKDVEYGGMDLRSALTNAVELSPSENYKEFLHGLITVI 212
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
G I L V + + LG + L L+II
Sbjct: 213 DSGGDIRSYLEERVEYFFEKARQSQKAFLELLGMMAESYVTALVAAPLFLMII 265
>gi|308068034|ref|YP_003869639.1| hypothetical protein PPE_01259 [Paenibacillus polymyxa E681]
gi|305857313|gb|ADM69101.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 290
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 3/157 (1%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED-IGGQSVPLSEEMLLTI 226
+ VQKR I P+ L +++ V +G ++ +AL E PL E+ T+
Sbjct: 133 LHGKVQKRDQQILMELPELLSKMMLLVGAGETVQRALLHCVERKGADTEHPLYRELRQTV 192
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLM 285
AE + Q AFE+ R + + T ++ + R G +LR L +R
Sbjct: 193 AEWESGFSFQQAFEHLSKRCGIQEMTVFTTTVLLNMRRGGSDFVMALRELSQTLWGKRTS 252
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + KL PM + L V++LV PA++ +
Sbjct: 253 ISRTRGEQASSKLVFPMALILLTVIVLVG-APALMMM 288
>gi|295094185|emb|CBK83276.1| Bacterial type II secretion system protein F domain. [Coprococcus
sp. ART55/1]
Length = 443
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 12/173 (6%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + + I + +KR + +P+ +D L + + +G+
Sbjct: 253 PTSGGGSGLMILFLGGFAAICIWGGNRSKIQGMEKKRSDELMSEYPELVDKLTLYLGAGV 312
Query: 199 SIDQALRRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++ A R+ + L+ E++ T+ E+ + A+ N +R +
Sbjct: 313 TVRGAFARIVKSGREDCAGTDQGGSVLTRELIYTLNEIQAGVSESEAYYNMGHRINLPMY 372
Query: 252 RNATQALIQSDRYGTSIGDSLRVLV---SETRSERLMEAEKKAASLGPKLTVP 301
L Q+ + GT D L ++ R A++K G KL +P
Sbjct: 373 IKLMSLLSQNVKKGT--RDILIMMAGEEQNAMQTRKEMAKRKGEEAGTKLLLP 423
>gi|297159257|gb|ADI08969.1| hypothetical protein SBI_05849 [Streptomyces bingchenggensis BCW-1]
Length = 268
Score = 69.8 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 23/224 (10%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
R G R + + + L + L +L G+
Sbjct: 50 RRPGLRERWRADGVADAIRDWAWAAGALIGCLVLVGGPLG----------CVLGLAAGYG 99
Query: 163 APSVWISNLV-------QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
A ++ R P A DLL C+E+G +A V +GG
Sbjct: 100 ARRWRRHRQASGGRRSGKRANDGAARQLPLAADLLTACLEAGAGPYKAAEAVGRSLGG-- 157
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ E + AEL A+ + +AL ++ G +S+ L
Sbjct: 158 -PIGERLAQAAAELRLGGEPSAAWGRMG---ALPGAHGLARALERAGTTGAPAVESMSRL 213
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
++ R+E+ +A+K+ T P+ +LP +L+ + P +
Sbjct: 214 AADCRAEQGRQADKRVERATVLATAPLGACYLPAFLLIGVAPVM 257
>gi|167842100|ref|ZP_02468784.1| type II secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 200
Score = 69.8 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 5/160 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 11 VYRILIARFKQRFLGVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMG 67
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L + + E R Q+ L+ G ++ ++L L R+ R +
Sbjct: 68 DALRVGADLKDVLEQQAERLQLADFSFFGVCLVLQRETGGNLTETLENLSGIIRTRRDIR 127
Query: 287 AEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ + ++
Sbjct: 128 MKTRALTAEGRIASKIIAAVPFAIAAFLFVVNRPYIDLLF 167
>gi|167582057|ref|ZP_02374931.1| hypothetical protein BthaT_28197 [Burkholderia thailandensis TXDOH]
Length = 261
Score = 69.8 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 7/197 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + L + + A + G W+++ +QKR+ I R P LD
Sbjct: 38 LVALGAVTAFATLWAGLRGGLLAAVAAFVAGATLVVFWLASRMQKRRLRIVRQLPSFLDG 97
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V G S+ A + + PL + L A ++
Sbjct: 98 IVRLVTLGNSVPAAFQAT---LQTTDAPLRGCLDHVSRMLRSGVEIDRAMVYVAALYRIK 154
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L S +YG L + R E E A S +L+ ++ LPV
Sbjct: 155 EFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA-WVLGALPV 213
Query: 310 L---ILVIIGPAILSII 323
++ P S +
Sbjct: 214 GIGSFVIATNPKYFSAM 230
>gi|318057611|ref|ZP_07976334.1| hypothetical protein SSA3_06719 [Streptomyces sp. SA3_actG]
gi|318080453|ref|ZP_07987785.1| hypothetical protein SSA3_28141 [Streptomyces sp. SA3_actF]
gi|333024717|ref|ZP_08452781.1| putative integral membrane protein [Streptomyces sp. Tu6071]
gi|332744569|gb|EGJ75010.1| putative integral membrane protein [Streptomyces sp. Tu6071]
Length = 314
Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/241 (14%), Positives = 71/241 (29%), Gaps = 5/241 (2%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE--YSLNILLVVRLV 122
++ R + +L + L A R+ +L+ L +
Sbjct: 23 AARLWAQGRAEREALVDRLAGDSHLGTRTRGSRRLAGLDRAVRRTRAGRALHRRLSSTGL 82
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
L + VG + +++ KR +
Sbjct: 83 PVSAGEFTLYALAGLALLWTVAATVLAPFFGPIAALVGAWSAYAFLNWQRAKRIEAFISQ 142
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
PD LL +G+++ AL AE++ P EE+ +L+ + A +
Sbjct: 143 LPDVARLLANATAAGLALRTALAMAAEELEN---PAGEELSNVADQLALGRSIDEALDEL 199
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + L+ S++ G ++ SLR L + E + T
Sbjct: 200 SRRLPSRELVVLVTTLVLSNKAGGTVVGSLRNLTVTLEERKETRREVRTMLSEVNATAFT 259
Query: 303 I 303
+
Sbjct: 260 V 260
>gi|15678998|ref|NP_276115.1| hypothetical protein MTH980 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2622079|gb|AAB85476.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 313
Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 79/190 (41%), Gaps = 3/190 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + G I+ + + AV++ + +I ++++R +I+++ PD
Sbjct: 46 LAFLGGAIFAVLASVVAALLGLSVILAVLVGFSLPSIMLGAYIFIMMERRVDAIEQSTPD 105
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + +G+ ++ AL V+ G PL +E+ + E+ A + R
Sbjct: 106 FLRQIASLLRAGVGLESALEDVSRQGEG---PLYDELKRAVIEIKIGRTFDEAILSMSER 162
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + +++ R G S+ D + + + R+ ++ E+KA + + + +
Sbjct: 163 LKSKNLDRTFRMILEGRRAGGSLSDVIETVAEDLRAVLALKRERKANVMMSVMFLVVAAI 222
Query: 306 FLPVLILVII 315
L +I
Sbjct: 223 IAAPFALGMI 232
>gi|291460200|ref|ZP_06599590.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417147|gb|EFE90866.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 256
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 7/198 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + LL Y F + L P ++L ++RQ + + +AL +L
Sbjct: 28 LFRALLFSGLLAYCFYQSLLFFFLSIPPALLYPFYLRASLRKQRQRKLLLEFREALSVLS 87
Query: 192 ICVESGISIDQALRRVAEDIG---GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +G S++ A R ++ G++ +S E L + +F R+ +
Sbjct: 88 SFLGAGYSLENAFRLSGRELSSLLGENAMISREFQKISEGLEQKLPIEDLLFDFSTRSGL 147
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +RN ++ + + G + +R + + E S + I+ +P
Sbjct: 148 DEIRNFSELFSVARKSGGELETIIRRSSELIHDKIGISEEILTLSA-ARRYEQRIMNLIP 206
Query: 309 VLILVII---GPAILSII 323
L+L+ + P L I+
Sbjct: 207 FLLLLYMKLSSPDFLRIL 224
>gi|319795782|ref|YP_004157422.1| type II secretion system f domain [Variovorax paradoxus EPS]
gi|315598245|gb|ADU39311.1| Type II secretion system F domain [Variovorax paradoxus EPS]
Length = 330
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/308 (14%), Positives = 97/308 (31%), Gaps = 17/308 (5%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ A+ I L+ A + + ++ K A R + + + T
Sbjct: 4 ALVVAIGIALLMAAAGLLLWQWAK-NRQSKQTADRHLAQRIEASLAAEVPVPMPLRETSL 62
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ L+ L + K R ++ + ++ V+ + +++ +
Sbjct: 63 GSAPSELTSDPWLETGLDLPTLPRKSRIETLLPDWLVGVVRARTAVIAAVLILMMCALVG 122
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ L L + ++ + +QK + + P +D ++ +
Sbjct: 123 SFAGWLAAGGVLLLLVLVASFA---------LWLRLQKFRRQLVSQLPAYIDSMVRLITI 173
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S A + I PL + + + + A +++ +
Sbjct: 174 GNSTQAAFQLA---IANCEPPLRGYLDRAASLVRAGVDLDRALHQTAVSVRIEEMYLLAS 230
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILV 313
L RYG L + + R E E A S +L+ I+ LPV L+
Sbjct: 231 ILGLGVRYGGRADLLLERVANFMRDREQAEHELVAMSSETRLSA-WILGLLPVGVCTFLM 289
Query: 314 IIGPAILS 321
I P+
Sbjct: 290 ISNPSYFM 297
>gi|291561781|emb|CBL40581.1| hypothetical protein CK3_08150 [butyrate-producing bacterium SS3/4]
Length = 408
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 6/179 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ I F ++ + + +P+ L ++ +G + QA ++
Sbjct: 231 LIFLGIAAALCLFLKEKSDAKEAKKQWEDRMILDYPELLSDFVVLTGAGYPVRQAWKKQV 290
Query: 209 EDIGGQS----VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
D ++ P+ EM + ++ A+ F R + C L S
Sbjct: 291 VDAESKNTVLIHPVYREMRTALNQMETGTPEIRAYGEFGRRIGLGCYIKFASLLGNSVST 350
Query: 265 GT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + L + +R A +K KL +PM + L V++++++ PA LS+
Sbjct: 351 GGKDLRRLLEEEMETAFRQRKELALRKGEEASTKLLIPMFL-MLGVVMVMVVAPAFLSL 408
>gi|187923648|ref|YP_001895290.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
gi|187714842|gb|ACD16066.1| type II secretion system protein [Burkholderia phytofirmans PsJN]
Length = 342
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/221 (16%), Positives = 63/221 (28%), Gaps = 7/221 (3%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + + R + I A +
Sbjct: 94 GQARVRFMVQHAMARAGIANAKAPAAIAGAIVMLLCGWAAMVGGALAACVALIACVMFFY 153
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ V KR+ I R P LD ++ + G S+ A + + PL E +
Sbjct: 154 FLLTMRVNKRRQQIVRQLPLFLDGIVRLITLGNSVPAAFQAA---LQTTEAPLRECLDYV 210
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L A + + L S +YG L + S R
Sbjct: 211 SRMLRTGVEIDRALSQVAQIYGVRELELVGAVLRLSVKYGGRADVMLERMASFMRDLEHA 270
Query: 286 EAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
E E A S +L+ ++ LP+ L++ P + +
Sbjct: 271 ERELVAMSSETRLSS-WVLAMLPIGIGGFLILSNPKYFASM 310
>gi|289625309|ref|ZP_06458263.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647834|ref|ZP_06479177.1| type II secretion system protein F domain [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867143|gb|EGH01852.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871031|gb|EGH05740.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 294
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 68/194 (35%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L + +++S + R + + P LD
Sbjct: 71 MGLALSLYALLILIGYGLGGGIGAVSALLAVPLTLRLFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVLHG---IEATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LPV
Sbjct: 188 EFHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-LVLALLPV 246
Query: 310 LIL---VIIGPAIL 320
+ + + P+ L
Sbjct: 247 GMAGYFLTVNPSYL 260
>gi|170696832|ref|ZP_02887932.1| type II secretion system protein [Burkholderia graminis C4D1M]
gi|170138260|gb|EDT06488.1| type II secretion system protein [Burkholderia graminis C4D1M]
Length = 356
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 7/178 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A + +S +R+ +I R P LD ++ + G S+ A +
Sbjct: 151 GPLAAGVTLLGCAVFLYFVMSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQAS- 209
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL E + L A + + L S +YG
Sbjct: 210 --LQTTEAPLRECLDHVSRMLRSGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRA 267
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
L + S R E E A S +L+ ++ LPV L++ P +
Sbjct: 268 DVMLDRMSSFMRDLEQAERELVAMSSETRLSS-WVLGMLPVGIGGFLILTNPRYFGSM 324
>gi|167620220|ref|ZP_02388851.1| hypothetical protein BthaB_28195 [Burkholderia thailandensis Bt4]
Length = 242
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 7/197 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + L + + A + G W+++ +QKR+ I R P LD
Sbjct: 19 LVALGAVTAFATLWAGLRGGLLAAVAAFVAGATLVVFWLASRMQKRRLRIVRQLPSFLDG 78
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V G S+ A + + PL + L A ++
Sbjct: 79 IVRLVTLGNSVPAAFQAT---LQTTDAPLRGCLDHVSRMLRSGVEIDRAMVYVAALYRIK 135
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L S +YG L + R E E A S +L+ ++ LPV
Sbjct: 136 EFELVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA-WVLGALPV 194
Query: 310 L---ILVIIGPAILSII 323
++ P S +
Sbjct: 195 GIGSFVIATNPKYFSAM 211
>gi|319941898|ref|ZP_08016219.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
3_1_45B]
gi|319804551|gb|EFW01421.1| hypothetical protein HMPREF9464_01438 [Sutterella wadsworthensis
3_1_45B]
Length = 292
Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 73/186 (39%), Gaps = 7/186 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
IL ++ L+ V ++++G + + + + + +P+A+D
Sbjct: 69 ILVMMGALLLGWFLKLSIAAEVLLLVMVGAASWII---VRRWRLDRARRAFLSRFPEAVD 125
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+++GI +D+AL+ + E +L E+ + A NF +
Sbjct: 126 NFTRSIQAGIPVDRALKILGEAYDD---EFGRRVLKLCREMKVGLPFREALGNFADELDD 182
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V + L + G+++ L L R R ++ + KA + + + ++ LP
Sbjct: 183 PDVDFFCEVLALNRETGSALSPMLASLSMMLRERRAIDRKLKALTSESRASAR-VLCLLP 241
Query: 309 VLILVI 314
V IL +
Sbjct: 242 VFILGL 247
>gi|227872976|ref|ZP_03991275.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227841192|gb|EEJ51523.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 286
Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 4/220 (1%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
L + + + +L + + + I FG
Sbjct: 49 FSWAELPPLRLRGVLFERLEQNAKVLYGEMYAEYYANVYYAMALSFFHFILCFGCLLAGW 108
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ I + VG + + KR + + P+ + + I V SG+ + A
Sbjct: 109 QDSRNFFYLGIFLAIVGLIYGCDSMRQKLVKRTENCETELPEVVSTMAILVNSGMILRDA 168
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
V G + M ++ A F T + T AL+QS
Sbjct: 169 WNMVG---GRGEGDIYALMRDASEDIRNGHADSEAIAKFGRATNSPEIIKFTSALMQSMG 225
Query: 264 YG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
G + L S+ +E+ +K KL +P+
Sbjct: 226 KGAGELPLFLARQSSDLWNEKKQRLLQKGEQASAKLLMPI 265
>gi|104779903|ref|YP_606401.1| type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
gi|95108890|emb|CAK13586.1| Putative type II/IV secretion system membrane protein [Pseudomonas
entomophila L48]
Length = 292
Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 7/162 (4%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++S +++ I P LD + +++G ++ A+ E PL ML
Sbjct: 104 YFYLSWRCRRQLRQIIEQLPGLLDYSVRSLKAGRTLSDAVLGGVEATRE---PLRSAMLR 160
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ A D +R L + R+G + + + L+ R
Sbjct: 161 VRRNVQLGVPLDDAVSELAELYGQDELRMFALGLRINQRHGGNASELMENLIKLIREHEQ 220
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSII 323
+ + +A + ++T I+ LP+ ++ + P L +
Sbjct: 221 GDRQLRAMTGETRITA-WILGALPLGMVGYFLFANPGYLMAM 261
>gi|330963435|gb|EGH63695.1| hypothetical protein PSYAC_02057 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 295
Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 69/193 (35%), Gaps = 7/193 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+ ++ + I + V++S ++R + + P LD
Sbjct: 73 GLALTLYALLIVLGYWLGGGLGAISMLLAVPLVVRVFVSWRYERRVRRMIQQLPQLLDHT 132
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 133 VRSLKSGRTLADAVLHG---IEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELYERDE 189
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + RYG + + + L+ R + +A + ++T +++ LPV
Sbjct: 190 FHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGLLPVS 248
Query: 311 IL---VIIGPAIL 320
+ + + P L
Sbjct: 249 MAGYFLAVNPDYL 261
>gi|315231663|ref|YP_004072099.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
gi|315184691|gb|ADT84876.1| hypothetical protein TERMP_01901 [Thermococcus barophilus MP]
Length = 302
Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 4/194 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + ++ + V+ V+ + KR +++ PDA
Sbjct: 43 LLMSFLISIIIGTVLSMLNSIYGVVAFIVTLISTIWVYPYWRIVKRIEDMEQMLPDAFFY 102
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-M 248
L + +GIS +AL E + L+EE T+AE+ A + F R +
Sbjct: 103 LASSLRAGISFSEALE---ELTTAKFGALTEEFRKTVAEIKKGRPTVEALKAFALRNKKS 159
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + +I++ G + D L + ++ R ++ E+KA++ + + F+
Sbjct: 160 PVIYRSMMIIIEALERGAPMADVLVSVGNDVREILRIKKERKASTGMQTMFFIIASGFVG 219
Query: 309 VLILVIIGPAILSI 322
LIL ++ I +
Sbjct: 220 PLILGVVSQVIAGL 233
>gi|237812070|ref|YP_002896521.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|237505569|gb|ACQ97887.1| type II secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 329
Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 139 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 195
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 196 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 255
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 256 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 298
>gi|257784835|ref|YP_003180052.1| type II secretion system protein [Atopobium parvulum DSM 20469]
gi|257473342|gb|ACV51461.1| type II secretion system protein [Atopobium parvulum DSM 20469]
Length = 272
Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 61/189 (32%), Gaps = 3/189 (1%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
L + + + +L V V+ + F P + +
Sbjct: 33 RFLYKYGITLVDDAFVLFFISGIAASILFGILFESVIGVLCGLFSLFLVPYFLYEHAKHQ 92
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
I P + + + SG+++ Q++ V++ +SE + ++
Sbjct: 93 SALEIAHMMPSIFRTIAVALGSGLTLSQSIEYVSKH---TEGVVSESFCIADMQIKCGFP 149
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A E+ R V AL+ S R G+ + + L+ + + +
Sbjct: 150 IEEAIEDLAERLDAPGVNLLASALVISHRTGSPLKNLLQKTAELVELQEKNQRLIATKTA 209
Query: 295 GPKLTVPMI 303
+L+ ++
Sbjct: 210 QVRLSARIV 218
>gi|67641291|ref|ZP_00440072.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|121598780|ref|YP_993095.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124386324|ref|YP_001026128.1| hypothetical protein BMA10229_A0120 [Burkholderia mallei NCTC
10229]
gi|126449995|ref|YP_001080600.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|167002478|ref|ZP_02268268.1| type II secretion system protein [Burkholderia mallei PRL-20]
gi|254178697|ref|ZP_04885352.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|254206226|ref|ZP_04912578.1| type II secretion system protein [Burkholderia mallei JHU]
gi|121227590|gb|ABM50108.1| type II secretion system protein [Burkholderia mallei SAVP1]
gi|124294344|gb|ABN03613.1| putative membrane protein [Burkholderia mallei NCTC 10229]
gi|126242865|gb|ABO05958.1| type II secretion system protein [Burkholderia mallei NCTC 10247]
gi|147753669|gb|EDK60734.1| type II secretion system protein [Burkholderia mallei JHU]
gi|160699736|gb|EDP89706.1| type II secretion system protein [Burkholderia mallei ATCC 10399]
gi|238522200|gb|EEP85646.1| type II secretion system protein [Burkholderia mallei GB8 horse 4]
gi|243061819|gb|EES44005.1| type II secretion system protein [Burkholderia mallei PRL-20]
Length = 306
Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 116 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 172
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 173 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 232
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 233 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 275
>gi|283787696|ref|YP_003367561.1| tight adherence protein B [Citrobacter rodentium ICC168]
gi|282951150|emb|CBG90841.1| putative tight adherence protein B [Citrobacter rodentium ICC168]
Length = 300
Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 76/187 (40%), Gaps = 5/187 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ ++ + F V+L + ++++ + RQ+ + + +AL+
Sbjct: 77 LIIVLIALVAGAFVNQQFFQFPYMVVLPAILFITVYTIYLQSKKLARQA-FETGFAEALN 135
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ V +G S+ + + + + G + EE + L + + F + Y R
Sbjct: 136 IIGGAVGAGNSLLHGIEQSGQKVSGI---VGEEFTIISQRLEIGEDVESVFMDSYERLFY 192
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A++ + R G + + + L + RLM+ +K A + P+ ++ I+ +P
Sbjct: 193 REYFFFVIAVLINMRGGGEVKEIVSHLAKLISNARLMDRQKLAKTAEPRASIK-ILMVIP 251
Query: 309 VLILVII 315
V +
Sbjct: 252 VGFFFFL 258
>gi|20089131|ref|NP_615206.1| integral membrane protein [Methanosarcina acetivorans C2A]
gi|19913998|gb|AAM03686.1| integral membrane protein [Methanosarcina acetivorans C2A]
Length = 662
Score = 69.1 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 46/310 (14%), Positives = 107/310 (34%), Gaps = 15/310 (4%)
Query: 12 TELAVAITTAVSIFSLIYAV-VIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
+ + + ++ I + + L + R+ + + + ++
Sbjct: 282 LYMLIYVIIPLATLLFIVLLDTVGELSMSPEKSRVPRYPINLYDIPELSSKLSAEEEEKR 341
Query: 71 RLRTRDSKSLRNFVKK-LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI---I 126
+ + + L N N + DE F L + ++ L + +
Sbjct: 342 NKKLKLYRQLYNMRDLVFNPYKTIRDEPRYT------FFFGVPLGLYYLIHLPKTLKESL 395
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F + + ++I V P + + R I PD
Sbjct: 396 NYSFHWNLNFAHISDSSVQLISSIDDYLVIFTVIALIPFIIFYEIRAWRMRKIDERMPDL 455
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L L +SGI + +L+ +AE G LS+E+ +LS+ + A N
Sbjct: 456 LRNLSSMNDSGILLSNSLKIMAESKMGI---LSKELKKLKEDLSWGNSTSRALMKLENNI 512
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ LI+++ + I + L + + +SE ++ E++++ + + + FF
Sbjct: 513 RTATSSRVLHTLIKANESTSDIKNVLSITAEQVKSEERLK-EERSSEMVVYVVTIYVAFF 571
Query: 307 LPVLILVIIG 316
+ + I+ I+
Sbjct: 572 VFLFIVYILA 581
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/278 (12%), Positives = 81/278 (29%), Gaps = 37/278 (13%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
K + I K+R + S++ L + + I+G I+
Sbjct: 12 RAFGDFFYKNKESFKEIKIKIRHS--HIPKSVDQYLASAFMYSLFAGIIGGIFGLWLGLK 69
Query: 142 LEYPFQLRVGAV-------------------------ILIGYVGFCAPSVWISNLVQKRQ 176
R+ I+ V F ++ R
Sbjct: 70 TFGDPISRLSLFVDSTRACFAEEYLYLLAILVALLLFIISFLVVFGMIYIYPYFQADIRN 129
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNR 235
+ I ++ A+ + + G+SI R ++ +EE+ + ++ +
Sbjct: 130 ACIDKSMLPAVTYMYALTKGGMSIYDVFRSLSSYTH-IFGTSAEEISYIVRDMDYLGKDF 188
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A + RT + ++ LI G +I + ++ + + + L
Sbjct: 189 ITALKEAKERTPSERFKDFVDGLIL-VSSGGTITEYMKNKSEQYQEMADLANRNLLKRLD 247
Query: 296 PKLTVPMIIFFLPVLILV-------IIGPAILSIIDTM 326
V + F L ++ + PA I+ +
Sbjct: 248 VLAEVYVTAFVAGPLFIMTTLVVLQFLKPASAQILYML 285
>gi|148253056|ref|YP_001237641.1| putative Type II secretion system protein [Bradyrhizobium sp.
BTAi1]
gi|146405229|gb|ABQ33735.1| putative Type II secretion system protein precursor [Bradyrhizobium
sp. BTAi1]
Length = 329
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 54/320 (16%), Positives = 103/320 (32%), Gaps = 36/320 (11%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
L + + + L A+++ E+EKR+ VA +RE
Sbjct: 12 LMSSVIGLALVLLLIGGVVLTAALLMGRRTRLEIEKRVNLVAGKRETPGFADGLG----- 66
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L + V ++ G + +++ + L++ +
Sbjct: 67 --------------------ELLKTRKFDARVRRIFTIGIKYTWAMRSGALKLLLIAALS 106
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L A P + +S ++ + +PDA+
Sbjct: 107 AGGMWFLTQQLLGLSSLLAVAASAAASFFA------PRLLLSREQKQTERMFVDLFPDAV 160
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D + + +G+ I A+R VA S P+S L EL + A +
Sbjct: 161 DTVARMLRAGLPITVAMRTVA---VDGSPPVSRVFGLIADELRIGVPLEEALDTNSREIG 217
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IF 305
+ R A+ G ++ +L L R R + KAA+ +LT + I
Sbjct: 218 LPDFRFFAVAMTLQFATGGNLTATLESLSDIIRKRRAARLKAKAATGEIRLTAYTLGAIP 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
L L+++ P L+ + T
Sbjct: 278 ILTTGALLVVQPRYLTPLWT 297
>gi|159039934|ref|YP_001539187.1| type II secretion system protein [Salinispora arenicola CNS-205]
gi|157918769|gb|ABW00197.1| type II secretion system protein [Salinispora arenicola CNS-205]
Length = 255
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P A DLL + +G +D+++ VAE + G PL+E + L L A+
Sbjct: 117 LPLAADLLASVMRAGAPVDRSVLAVAEALDG---PLAERLALVGRLLRLGAEPAEAWSTL 173
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ A ++S G ++ +L L + R++R E E KA G + +P+
Sbjct: 174 A---AVPGAERLIAAALRSAASGATLAGALTRLADDLRADRATEVEAKARRSGVLIVLPL 230
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ FLP IL + P I++++
Sbjct: 231 GLCFLPAFILAGLMPVIVAVL 251
>gi|119714631|ref|YP_921596.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119535292|gb|ABL79909.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 240
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 58/144 (40%), Gaps = 6/144 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P +DL + G + + V + G P ++ + A L+ + +
Sbjct: 101 LPHVVDLFAATLRGGAAPADGIALVCTALPG---PAADRLAGVAARLALGLDPGQVWSAL 157
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + L ++ G + ++ L + E E++A ++G K +P+
Sbjct: 158 A---DDPHLGRLGRTLARAHSSGAPVVAAVERLADDLARSARAETEERARAVGVKAALPL 214
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ LP +L+ I P +++++ ++
Sbjct: 215 GLCLLPAFVLIGIVPLVVALLASL 238
>gi|119960955|ref|YP_948379.1| type II secretion system protein F [Arthrobacter aurescens TC1]
gi|119947814|gb|ABM06725.1| putative bacterial type II secretion system protein F domain
[Arthrobacter aurescens TC1]
Length = 284
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 80/237 (33%), Gaps = 18/237 (7%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+V+ + L AAG + L+ L L + +F
Sbjct: 19 STWVQPPAEPKRKKPRRLDLLLMAAGI------EKVTGTGLLATCAGLGLFALLVFYV-- 70
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ G P + +KR++S+++ WPD +D L + +G+++
Sbjct: 71 -----LTGSPPVALCFAIFGSWIPFAIVRWRARKRRNSLRQLWPDIVDHLRSAIRAGLAL 125
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+AL ++ + L E L A+ N + A + R +AL
Sbjct: 126 PEALIQLGHN---GPEELRELFLDFGADYRAAGNFEAAADKLKERLADPVADRIIEALRM 182
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G +G L L R +E +A + + P ++LV++
Sbjct: 183 TREVGGSDLGRMLGTLSGFLRDSARTRSELEARQSWT-VNAARLAVAAPWIVLVVMA 238
>gi|261349491|ref|ZP_05974908.1| conserved hypothetical membrane-spanning protein
[Methanobrevibacter smithii DSM 2374]
gi|288861855|gb|EFC94153.1| conserved hypothetical membrane-spanning protein
[Methanobrevibacter smithii DSM 2374]
Length = 306
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/205 (14%), Positives = 81/205 (39%), Gaps = 4/205 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +++ I + F + + + + ++ +KR + I+++ P
Sbjct: 41 FLAILIFFILFADIVIGIFIVFFKISDLSLFLPLLIIPFVATYVFIKQEKRAAEIEKSAP 100
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D L L ++ G+S + A+ +++ G PL +E IAE+ N A+
Sbjct: 101 DFLRQLSAMLKVGLSFENAMEDMSKYGEG---PLYDETRRAIAEIKVGRNFDDAWMATAQ 157
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + ++ S + G+SI + + + + R ++ E+K++ + + + +I
Sbjct: 158 RLKSKELGRIFTIILGSRKSGSSIANVIFDVSNNLRDMLALKRERKSSVMMAVMFL-IIS 216
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
+ + + + +
Sbjct: 217 AVIASPFALGMVSVYSQFMQSFGKQ 241
>gi|291087379|ref|ZP_06346291.2| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. M62/1]
gi|291075554|gb|EFE12918.1| putative bacterial type II secretion system protein F domain
protein [Clostridium sp. M62/1]
Length = 268
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 77/190 (40%), Gaps = 7/190 (3%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ Y F L G P L ++R+ +KR + +A+ +L + +G S
Sbjct: 48 AAVSYVFYRNAAVFFLFLPAGILYPLYKKRELKKRRKEELKRQFKEAVLMLSSSLAAGYS 107
Query: 200 IDQAL---RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
++ + ++ G+ +++E +LS + + +F +R+ ++ +R+
Sbjct: 108 MENSFSQAEIQLRELYGERAMMADEFSDMRRQLSLNRTLEELWSDFADRSGVEEIRSFAL 167
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII- 315
L + R G +G + + + ++ E + + K I+ LP+LI++ I
Sbjct: 168 ILRSARRNGGRMGAVISHIAEIIGGKLQVQEEIRTMTAQ-KQFEQKIMNLLPILIVLYID 226
Query: 316 --GPAILSII 323
P +
Sbjct: 227 VTSPGFFDSM 236
>gi|330465091|ref|YP_004402834.1| type II secretion system protein [Verrucosispora maris AB-18-032]
gi|328808062|gb|AEB42234.1| type II secretion system protein [Verrucosispora maris AB-18-032]
Length = 287
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 39/314 (12%), Positives = 100/314 (31%), Gaps = 28/314 (8%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
L +A+ ++ ++ VV + + + LR+ + +
Sbjct: 1 MNLHLFIAVVAGAAVGLGVFLVV---------RELVPATPALGPALRRLHPPAGVARPSP 51
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ + L +++ + + L+D + + L+ +I L
Sbjct: 52 ADRQLEWLTGLARWLRPPHRQLALLD---------------RTPEQYTLSLLLSALIGLA 96
Query: 130 LGIIWIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ F + P + V + + + + + + ++A LD
Sbjct: 97 APALLSFALFAVGISLPLVVPVLGSLGLAALCALVAHRAVVTRAEAAREEFRQAVCTYLD 156
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + + + Q+L R A G E L + + + +R +
Sbjct: 157 LVALQLSAAHGPVQSLERAAAICDGWVFERISEALRMAQMQ--MHSPWDELRDLADRIGI 214
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + S G + ++LR R + + +A + +L +P +
Sbjct: 215 PELGDVGAIMQSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTSRLDIPGALLVF- 273
Query: 309 VLILVIIGPAILSI 322
VL+ I P + +
Sbjct: 274 VLLGFAIYPFLARL 287
>gi|302521639|ref|ZP_07273981.1| integral membrane protein [Streptomyces sp. SPB78]
gi|302430534|gb|EFL02350.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 242
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 3/159 (1%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L + VG + +++ KR + PD LL +G+++ AL
Sbjct: 33 ATVLAPFFGPIAALVGAWSAYAFLNWQRAKRIEAFISQLPDVARLLANATAAGLALRTAL 92
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
AE++ P EE+ +L+ + A + R + L+ S++
Sbjct: 93 AMAAEELEN---PAGEELSNVADQLALGRSIDEALDELSRRLPSRELVVLVTTLVLSNKA 149
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
G ++ SLR L + E + T +
Sbjct: 150 GGTVVGSLRNLTVTLEERKETRREVRTMLSEVNATAFTV 188
>gi|323486496|ref|ZP_08091819.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
WAL-14163]
gi|323400199|gb|EGA92574.1| hypothetical protein HMPREF9474_03570 [Clostridium symbiosum
WAL-14163]
Length = 257
Score = 69.1 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/230 (16%), Positives = 83/230 (36%), Gaps = 11/230 (4%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
+ G R+ + +++L G ++ + F A +L V
Sbjct: 1 MRAERTGIRAGQEDYGRYRLSGREWLLYLGEGAMFCAATAYVFYRSFT----AFLLFLPV 56
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR---RVAEDIGGQSV 216
GF P L +RQ ++R + +A+ +L + +G S++ A R E++ G+
Sbjct: 57 GFLYPLAKKKELALQRQEELRRQFKEAVLILSSSLGAGYSVENAFAGSLRELEELYGREG 116
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+++E +L + F +R+ ++ ++N + S R + + V
Sbjct: 117 MITKEFSYIAHQLRMNRTVETLLAEFADRSGLEEIKNFSDIFAVSKRSRGELVSVVNHTV 176
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII---GPAILSII 323
+ E + K I+ +P I++ I P +
Sbjct: 177 HVISDRLQVREEILTMTAE-KQFEQKIMNLVPYCIVIYIEFSSPGFFRQM 225
>gi|297627214|ref|YP_003688977.1| hypothetical protein PFREUD_20690 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922979|emb|CBL57561.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 247
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 6/191 (3%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
L P + + + S + R+ ++ P+ LDL+
Sbjct: 59 VAVALVSALLVPMPWGLAVGAAGAVAAYYVLARLESGATRARREALLGQQPEVLDLIAAA 118
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
E+G + +A E P + + A L + A+++ +
Sbjct: 119 QEAGSPLRRA---AGEVAALAPEPSASVLREVDAHLRVGFSEAEAWQSLA---DDPVWGS 172
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ L +S R G ++ D++ + + TR KKA ++ K PM+ FLP IL
Sbjct: 173 TARDLARSARTGEAVADTIHLHATRTREAHRDHLNKKARTVAVKSVGPMMACFLPAFILA 232
Query: 314 IIGPAILSIID 324
+ P + I
Sbjct: 233 GVVPIFVGIAS 243
>gi|240102253|ref|YP_002958561.1| type II secretion system protein F [Thermococcus gammatolerans EJ3]
gi|239909806|gb|ACS32697.1| Bacterial type II secretion system protein F [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 11/229 (4%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L IL ++ + L + ++ I L + + Y
Sbjct: 12 LTRILERILPAKWIKRYELFIYSAGIEFLAIEYLIISILLSIIFAAVVLILSNTFYALVT 71
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V + + + + V KR +++ PDA L + +GIS +AL
Sbjct: 72 LVAVFVGMAFA-------YPYWRVSKRIEEMEKHLPDAFFYLASSLRAGISFSEALE--- 121
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTS 267
+ + L++E + E+ + A + R + V + +I++ G
Sbjct: 122 DLTTAKFGALTDEFKRVVGEIRKGRSTVEALKVMAVRNRKSPVVYRSLMIIIEALERGAP 181
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ D L + ++ R ++ E+KA++ + + F+ I+ +G
Sbjct: 182 MSDVLVYVANDVREILRIKQERKASTGMQMMFFIITSGFVGPAIIGTVG 230
>gi|226196404|ref|ZP_03791986.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|225931621|gb|EEH27626.1| type II secretion system protein [Burkholderia pseudomallei
Pakistan 9]
Length = 316
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 126 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 182
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 183 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 242
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 243 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 285
>gi|238062112|ref|ZP_04606821.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
gi|237883923|gb|EEP72751.1| type II secretion system protein [Micromonospora sp. ATCC 39149]
Length = 288
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 3/192 (1%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + + P + + I + +V + + ++A LDL+
Sbjct: 100 AFVGAVLFLGGVSVPLTVPLVGSIGMAFVAALVAHRSVLARADAARDEFRQAVCTYLDLV 159
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + + QAL R A G E L + + +R +
Sbjct: 160 ALQLSAAHGPVQALERAAAVCDGWVFDRIRESLRIAQMQ--MHSPWDELRELADRIGIPE 217
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + + S G + ++LR R + + +A ++ +L +P + VL
Sbjct: 218 LGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEAVTSRLDIPGSLLVF-VL 276
Query: 311 ILVIIGPAILSI 322
+ + P I +
Sbjct: 277 LGFAVYPFIARL 288
>gi|260365460|ref|ZP_05777997.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
gi|260877525|ref|ZP_05889880.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|260897534|ref|ZP_05906030.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|260901736|ref|ZP_05910131.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308087149|gb|EFO36844.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus Peru-466]
gi|308090878|gb|EFO40573.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AN-5034]
gi|308108899|gb|EFO46439.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ4037]
gi|308114317|gb|EFO51857.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus K5030]
Length = 304
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 9/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ F I ++ + +V + + +S + +R K +P
Sbjct: 80 VGFFAASSIAVYCVNDWFFMFEYWKVLLALEPILFVMFI--LKLSGIQAQR---FKDNFP 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL++L + SG SI A V + + EE L +
Sbjct: 135 DALNILSGALSSGQSIVHAFEYVGTQLDN---EVGEEFKKMSERLLIGEDPDDVLARSAA 191
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + G + D + + R +E +K A + + + II
Sbjct: 192 SFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARASAK-II 250
Query: 305 FFLPVLILVII 315
LPV+ ++I+
Sbjct: 251 AALPVIFIMIL 261
>gi|153836331|ref|ZP_01988998.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|149750233|gb|EDM60978.1| Flp pilus assembly protein TadB [Vibrio parahaemolyticus AQ3810]
gi|328470522|gb|EGF41433.1| putative TadB protein [Vibrio parahaemolyticus 10329]
Length = 304
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 9/191 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I F I ++ + +V + + +S + +R K +P
Sbjct: 80 IGFFAASSIAVYCVNDWFFMFEYWKVLLALEPILFVMFI--LKLSGIQAQR---FKDNFP 134
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL++L + SG SI A V + + EE L +
Sbjct: 135 DALNILSGALSSGQSIVHAFEYVGTQLEN---EVGEEFKKMSERLLIGEDPDDVLARSAA 191
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + G + D + + R +E +K A + + + II
Sbjct: 192 SFPYVEYFFFAATIRINLSRGGQLKDVINRINRIMFEARAIEKKKNALTSEARASAK-II 250
Query: 305 FFLPVLILVII 315
LPV+ ++I+
Sbjct: 251 AALPVIFIMIL 261
>gi|302185192|ref|ZP_07261865.1| type II secretion system protein [Pseudomonas syringae pv. syringae
642]
Length = 294
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L V + + V++S + R + + P LD
Sbjct: 71 MGLALSLYALLILIGYATAGVVGALSVLLAVPLTLRVFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVLHG---IDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LP+
Sbjct: 188 EFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-VVLALLPI 246
Query: 310 LIL---VIIGPAIL 320
+ + + P+ L
Sbjct: 247 SMAGYFLAVNPSYL 260
>gi|254381325|ref|ZP_04996690.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340235|gb|EDX21201.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 293
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 104/298 (34%), Gaps = 8/298 (2%)
Query: 28 IYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKL 87
+ A+V + ++ V L Q A S L
Sbjct: 4 VAAIVSGAAIGAGAALLIREVLRPSPALGPALRHLNQPAPAPSTDGPASRDELWGQWLLE 63
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
+L + L G + L+ ++ + + L+L + L +
Sbjct: 64 HLTDVPGVRIPHKDLALTG----STPARFLLTKVALAVGGLLLPPLSTIPLLLLGLPLYL 119
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ ++ + + AP + + + ++ ++ A LDL+ + +S +QA+ +
Sbjct: 120 PAIVGILAATVL-WFAPDLALRDKAKRARAEFAHAMAAYLDLVALRRAGNVSAEQAMEQA 178
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A+ +G L + L + + + + + + + QS G S
Sbjct: 179 AQ-VGRGWAFLRIQTALARSRVDK-VPHWESLTRLTAELDLPVLDDLAAIMRQSADDGAS 236
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +LR R+E L A S K+T P +++L+I PAI+ +++T
Sbjct: 237 VYATLRSRAKNLRTELLAAQAADANSDSEKMTAP-GALLAVLVMLLIAFPAIIRMLNT 293
>gi|330895622|gb|EGH27929.1| type II secretion system protein [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 293
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L V + + V++S + R + + P LD
Sbjct: 70 MGLALSLYALLILIGYATAGVVGALSVLLAVPLTLRVFVSWRYEVRVRRMIQQLPQLLDH 129
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 130 TVRSLKSGRTLADAVLHG---IDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 186
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LP+
Sbjct: 187 EFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-VVLALLPI 245
Query: 310 LIL---VIIGPAIL 320
+ + + P L
Sbjct: 246 SMAGYFLAVNPNYL 259
>gi|239629081|ref|ZP_04672112.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519227|gb|EEQ59093.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 227
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 4/196 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
++ Y F + A +L+ VG P +L Q+R + + + + +L
Sbjct: 1 MGISACAVVAYTFYRSLIAFLLMMPVGMLYPLYKKRDLRQERIRQLGLQFKEGILVLASY 60
Query: 194 VESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ +G S++ L ++ G ++EE + ++ F R+ ++
Sbjct: 61 LGAGYSLENGLAMCTGELEGIYGKQGMITEEFSTLTNGVRMNRPVELLLMEFGARSGLED 120
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V + Q + R G + + R + ++ E + ++ I+ +P L
Sbjct: 121 VDHFAQVFAAARRSGGELVGIINYTAGIIRDKVQVQEEIHTMTA-ARVFEQKIMNGIPFL 179
Query: 311 ILVIIGPAILSIIDTM 326
I++ I L M
Sbjct: 180 IVLYIDLTSLGFFRVM 195
>gi|153815434|ref|ZP_01968102.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
gi|145847293|gb|EDK24211.1| hypothetical protein RUMTOR_01669 [Ruminococcus torques ATCC 27756]
Length = 205
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/165 (13%), Positives = 61/165 (36%), Gaps = 4/165 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLL 224
+ +L +K++ + + +A+ + +++G S++ A+R +D+ + +E
Sbjct: 13 LRDLCRKKEKEFRVQFSNAIQAMGAALKAGYSVENAIREAEKDLAPMYEENVRIRKEFRK 72
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ +L E F R + + + + G +R V +
Sbjct: 73 MVHQLDMKMPAVSVMEQFSERMKQEDTEDFVTVFSSAKMSGGDSISIIRNAVKIISGKID 132
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
E E + KL I+ +P I++ + + + ++
Sbjct: 133 TEQEIQTMFASKKLEFE-IMCAVPFFIILYMKLTFGEFLSVLYEN 176
>gi|326383472|ref|ZP_08205159.1| Type II secretion system F domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326197878|gb|EGD55065.1| Type II secretion system F domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 188
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 5/140 (3%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
D L +C+ +G+ + A L L+ + A+
Sbjct: 50 YDTLAVCLRAGLPLA---TAAAVAAETAPPELRSSFTRAADLLALGADPDQAWA--PVDA 104
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ++ R G+++ DS+ TR + + A G K++ P+ + F
Sbjct: 105 DSVDFAELAALISRASRAGSALADSVGGFADATRRRAENASLEAAERAGVKISGPLGLCF 164
Query: 307 LPVLILVIIGPAILSIIDTM 326
LP + + I P ++ + ++
Sbjct: 165 LPAFVCLGIVPVVIGLASSL 184
>gi|57641786|ref|YP_184264.1| hypothetical protein TK1851 [Thermococcus kodakarensis KOD1]
gi|57160110|dbj|BAD86040.1| hypothetical membrane protein, conserved [Thermococcus kodakarensis
KOD1]
Length = 305
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/215 (19%), Positives = 84/215 (39%), Gaps = 8/215 (3%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ L + + L I + G L + + I ++ +
Sbjct: 30 ELFLYSANINFLAAEYLVISLLMGLILGLAFSIFSFLYGAIAFIAGFIGMAFLYPYWRLT 89
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR I+++ PDA L + +GIS +AL E + L+EE T+AE++
Sbjct: 90 KRIDEIEKSLPDAFFYLASSLRAGISFSEALE---ELTTAKFGALTEEFKRTVAEINKGR 146
Query: 234 NRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A F R + + + +I++ G + D L + ++ R ++ E+KA+
Sbjct: 147 PTADALRAFALRNKRSQVLYRSMMIVIEALERGAPMSDVLMYVANDVREILRIQQERKAS 206
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + + F+ LIL I+ ++ +M
Sbjct: 207 TGMQIMFFTITSGFVGPLILGIVT----QVMSSMS 237
>gi|330969403|gb|EGH69469.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 294
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L V + + V++S + R + + P LD
Sbjct: 71 MGLTLSLYALLILIGYATAGVVGALSVLLAVPLTLRVFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVLHG---IDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LP+
Sbjct: 188 EFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-VVLALLPI 246
Query: 310 LIL---VIIGPAIL 320
+ + + P+ L
Sbjct: 247 SMAGYFLAVNPSYL 260
>gi|311112132|ref|YP_003983354.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
gi|310943626|gb|ADP39920.1| type II secretion system protein [Rothia dentocariosa ATCC 17931]
Length = 474
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+LL + +G+ + AL+ + + + +S+ + L+ + Q A++
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRALAHEERAISDALEHITLTLTVSADWQAAWDG---- 391
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+R + L + GT LR + R E AE+ +A L L +P+ +
Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLC 451
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP I I P ++S++ +
Sbjct: 452 SLPAFICCGIIPIVISLLPGL 472
>gi|227871818|ref|ZP_03990220.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227842319|gb|EEJ52547.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 473
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/184 (20%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 150 VGAVILIGYVGFCAPSVWI---SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ +L + F P + + R SS+ + + + L++ + +G++I +
Sbjct: 290 LLIPLLGLFACFLLPLQALEQQKTRQKTRLSSLTLDYAELVSKLVVYLGAGLAIRNSFSE 349
Query: 207 VAEDI-------GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+A+ +S PL EE+ + +L+ A+ NF R + +
Sbjct: 350 IAKHYNYLVKNCHQESHPLYEELNTLLNQLASNVGEGEAYLNFSKRIALKPYGKLISLIE 409
Query: 260 QSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
Q+ + G+ + L + + E S R A++ G KL +P+I+ V++L+I+ PA
Sbjct: 410 QNRKNGSKDLSRQLHMEMEEAFSVRKHMAKRLGEEAGTKLLLPLILQLF-VIMLMILYPA 468
Query: 319 ILSI 322
+ S+
Sbjct: 469 MQSL 472
>gi|20808466|ref|NP_623637.1| hypothetical protein TTE2067 [Thermoanaerobacter tengcongensis MB4]
gi|20517084|gb|AAM25241.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis
MB4]
Length = 309
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 108/304 (35%), Gaps = 42/304 (13%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
L ++ TA+S FS+I + + + EI+R+ + +
Sbjct: 1 MLKLILLFSLITALSAFSIIMFLYLLKEYKKQ------------EIIRRMERQLIAPKE- 47
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R F L V +N L+ G + + N++L + ++ IF
Sbjct: 48 ------------RKFNTLEVLGFGKVLKNFDILLKRTGIKKVDAENLILFLSVLNTFIFA 95
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + + V L + F + + + + QKR + +A+
Sbjct: 96 L--------------FIIKNEVFWAFLAPALIFVSVPLVLEKIAQKRYVKFNLQFAEAVQ 141
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ ++ +I AL + I PL +E+ +A++ + A ++F +
Sbjct: 142 DIADYLKISGNIVNALE---KVIDTTENPLKDEIKKIVAKVDAGISLYEALKDFAKESGS 198
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V +++ + + + D + + ++ + + + K TV MII
Sbjct: 199 PLVEAWVDSMVFAGQMKANTADICQKMSAKIKERIRQNNKISSFMKSTKSTVIMIIAITI 258
Query: 309 VLIL 312
+L+L
Sbjct: 259 LLML 262
>gi|325518468|gb|EGC98167.1| type II secretion system protein [Burkholderia sp. TJI49]
Length = 257
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 5/196 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + V A G VW+++ +Q+R+ I R P LD
Sbjct: 34 AITALVVLVAIAAIAGSRGGVLACFAAIACGSAVFGVWLASRIQRRRLKIVRQIPSFLDG 93
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V G S+ A + + PL + L A + + +
Sbjct: 94 IVRLVTLGNSVPAAFQAA---LLTTEEPLRGCLDHVSRMLRTGVEIDRAMLHIAKIYRTE 150
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L S +YG L + R E E A S +L+ +++
Sbjct: 151 EFELLGSVLRLSVKYGGRADVMLERMAIFMRDLEQAERELTAMSAETRLSAFVLVMLPIA 210
Query: 310 L--ILVIIGPAILSII 323
+ +V+ P L +
Sbjct: 211 IGSFVVMTNPTYLQGM 226
>gi|282853085|ref|ZP_06262422.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
gi|282582538|gb|EFB87918.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
gi|314922728|gb|EFS86559.1| type II secretion system F domain protein [Propionibacterium acnes
HL001PA1]
gi|314965812|gb|EFT09911.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA2]
gi|314982955|gb|EFT27047.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA3]
gi|315091259|gb|EFT63235.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA4]
gi|315094495|gb|EFT66471.1| type II secretion system F domain protein [Propionibacterium acnes
HL060PA1]
gi|315105216|gb|EFT77192.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA2]
gi|327328989|gb|EGE70749.1| membrane associated protein [Propionibacterium acnes HL103PA1]
Length = 300
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGALLACAPVFVISGRRNAPLRLSDALAGLSDHGRQDAVVDLAAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRVVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALVRAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + A +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLARIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|255514159|gb|EET90421.1| type II secretion system protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 344
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 97/245 (39%), Gaps = 10/245 (4%)
Query: 84 VKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE 143
+ L + + + L AG + + + + +I + +L+
Sbjct: 3 ISFEKLVSRDLARRLSRLLDLAGMKMP------VGKLIEYGVFGFFAILIILPIALSILK 56
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
Y F L + I+ G + A + I+ + R++ ++ D + + SGI++D++
Sbjct: 57 YVFILAIILGIVGGVMYLVAIYMVINYKIDDRKTKMEGMLSDYFQIASANLRSGIAMDRS 116
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L A + ++++ ++ + + R + + +A + +I++ R
Sbjct: 117 LLLAARP---EFKFFADDIKEMNRQIFSGQTMESGLKYLAGRYKSFTLDHAIRMMIEAQR 173
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
YG ++ D L L + R+++LM+ E A L + +L + +++I
Sbjct: 174 YGGAMADLLDQLSKDIRNQQLMQKEV-AGQLFMYSIFIAFAGLVAAPVLYGLTSQMITIT 232
Query: 324 DTMKD 328
D +
Sbjct: 233 DAVWK 237
>gi|78066134|ref|YP_368903.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
gi|77966879|gb|ABB08259.1| Flp pilus assembly protein TadB [Burkholderia sp. 383]
Length = 326
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/312 (12%), Positives = 92/312 (29%), Gaps = 23/312 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
A + ++ +++ + + + + + D+ ++R
Sbjct: 4 ATLLALMFALICAAAGLLLWRGSQVREGRAHTQRFFDSRVGQGAHAAAPAGDARAARAAA 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ + + + V + AG + L +
Sbjct: 64 PGAANSQAPEQGFARWRASVFDAWTVLSDRAGLDEIRA----------------GLVLAL 107
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ L V A G +WI++ + +R+ I R P LD ++ V
Sbjct: 108 VGIALLALWAGLAGGVLAAAAALVAGGVLVVLWITSRISRRRLKIVRQLPSFLDGIVRLV 167
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+ A + + +PL + L A + + ++
Sbjct: 168 TLGNSVPAAFQ---STLQTAEMPLRRCLDDVSRMLRSGVEIDRAMLHVAHTYRIREFELV 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL---I 311
L S RYG L + + R E E A S +++ ++ +P+
Sbjct: 225 GAVLRLSVRYGGRADVMLDRMSTFMRDLEHAERELSAMSAETRMSA-WVLALMPIAVGSF 283
Query: 312 LVIIGPAILSII 323
++ P + +
Sbjct: 284 VIATSPHYFTAM 295
>gi|163857688|ref|YP_001631986.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804]
gi|163261416|emb|CAP43718.1| putative Flp pilus assembly protein [Bordetella petrii]
Length = 307
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 79/251 (31%), Gaps = 8/251 (3%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + + R S L + + A D+N + +G L +R
Sbjct: 23 RRAGQGQRRQATSVFLERQLTQGRQNASADDDNAPRTILQSGIEHWDVLLRCAGLRQTAG 82
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ I I+ + + A +++ + +I +R+ + P
Sbjct: 83 LYGAISLILCTGVLLAAVLGGPVSAIVAAVMLLVAIYF----YIWLRADRRRGRMFDQLP 138
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ LD ++ + G S+ S PL E + A N
Sbjct: 139 EMLDTMVRLITIGNSMA---AAFQAASANTSEPLREVVEKAAHLSRSTQELDAALANVAR 195
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + +R + + +YG L + + R E AAS +L+ ++
Sbjct: 196 QYGFEELRLLAAVVRVAQKYGGRSDVVLERIAAFMRDVAQARGELVAASAEIRLSA-WVL 254
Query: 305 FFLPVLILVII 315
+P+ I I
Sbjct: 255 ALMPLGIACYI 265
>gi|52550504|gb|AAU84353.1| conserved hypothetical protein [uncultured archaeon GZfos9D8]
Length = 322
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 87/193 (45%), Gaps = 4/193 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ ++ + + + VILI + P + V+ + I +P L L
Sbjct: 60 VVAVIFSIIAFLLDVPIQDVILIAIIMAIIPPGLYDSHVKTKIRKIDAHFPSLLGDLAHL 119
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
SG+ + A+ VA+ GQ L++ + +++++ + A F R +R
Sbjct: 120 RRSGMPLGAAMGLVAQ---GQYGVLTKPIKWIDSQMTWGVTFEDALARFAKRYPTPLIRR 176
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ +I++ R G IG+ L + + +++E ++K+ + L V + +F+ V +++
Sbjct: 177 SISIIIEASRAGGEIGEILEAVAEDAHELKILEVKRKSETTP-YLAVSYLSYFVFVAVIM 235
Query: 314 IIGPAILSIIDTM 326
I+ + L +++ M
Sbjct: 236 ILCTSFLPMMEVM 248
>gi|330873644|gb|EGH07793.1| hypothetical protein PSYMP_04410 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 295
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 68/193 (35%), Gaps = 7/193 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G+ ++ + + V++S ++R + + P LD
Sbjct: 73 GLALTLYALSIVLGYWLGGGLGAASMLLAVPLVVRVFVSWRYERRVRRMIQQLPQLLDHT 132
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 133 VRSLKSGRTLADAVLHG---IEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELYERDE 189
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + RYG + + + L+ R + +A + ++T +++ LPV
Sbjct: 190 FHLFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGLLPVS 248
Query: 311 IL---VIIGPAIL 320
+ + + P L
Sbjct: 249 MAGYFLAVNPDYL 261
>gi|300742222|ref|ZP_07072243.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
gi|300381407|gb|EFJ77969.1| putative bacterial type II secretion system protein F domain
protein [Rothia dentocariosa M567]
Length = 474
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+LL + +G+ + AL+ + + + +S+ + L+ + Q A++
Sbjct: 336 MLELLAAQLRAGLGLTGALQALGRALAHEERAISDAIEHITLTLTVSADWQAAWDG---- 391
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+R + L + GT LR + R E AE+ +A L L +P+ +
Sbjct: 392 YDHPLLRELARILAPAYSAGTPSSALLRHCAATYRLEERRAAERASAKLAVALVLPLGLC 451
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP I I P ++S++ +
Sbjct: 452 SLPAFICCGIIPIVISLLPGL 472
>gi|291459838|ref|ZP_06599228.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417628|gb|EFE91347.1| putative bacterial type II secretion system protein F domain
protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 285
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 4/189 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L + ++ +I + I + + N + KR
Sbjct: 81 YYANLQWAMGITLVHLISAVTCIYAAWQNSGTTFLIGMFIALLAGVYAVENMHNELSKRT 140
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ + P+ + + I V SG+ + A R + E + + M + +
Sbjct: 141 ADCELELPEVVSTMAILVNSGMVLRDAWRMIGE---SSEGAIYKLMREAGENMQNGYSDA 197
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLG 295
A F T + T AL+QS G S + L SE S + + +
Sbjct: 198 DAILLFGRATDSPEIIKFTSALLQSMEKGGSELPLFLAKESSELWSSKRQKTLQLGEKAS 257
Query: 296 PKLTVPMII 304
KL P+++
Sbjct: 258 AKLLAPIML 266
>gi|254173284|ref|ZP_04879957.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
gi|214032693|gb|EEB73522.1| Bacterial type II secretion system protein F domain [Thermococcus
sp. AM4]
Length = 303
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/221 (17%), Positives = 85/221 (38%), Gaps = 5/221 (2%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
I+ ++ A + Y L I + I +LI+ I+ + ++ L+
Sbjct: 14 RILERILPAKWVKRYELFIYSAGIEFLAIEYLIISILLSVIFAVVVLILSNALYAVATLV 73
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
A + + KR +++ PDA L + +GIS +AL + +
Sbjct: 74 AVFVGMA-FAYPYWRISKRLEEMEKNLPDAFFYLASSLRAGISFSEALE---DLTTAKFG 129
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+EE + E+ + A R + + + +I++ G + D L +
Sbjct: 130 ALTEEFKRVVGEIRKGRSTVEALRVMALRNRKSPVIYRSLMIIIEALERGAPMSDVLVYV 189
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ R ++ E+KA++ + + F+ I+ +G
Sbjct: 190 ANDVREILRIKQERKASTGMQMMFFIITSGFVGPAIIGTVG 230
>gi|66047621|ref|YP_237462.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
gi|63258328|gb|AAY39424.1| type II secretion system protein [Pseudomonas syringae pv. syringae
B728a]
Length = 294
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ +L V + + V++S + R + + P LD
Sbjct: 71 MGLALSLYALLILIGYAMAGVVGALSVLLAVPLTLRVFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVLHG---IDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LP+
Sbjct: 188 EFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-VVLALLPI 246
Query: 310 LIL---VIIGPAIL 320
+ + + P+ L
Sbjct: 247 SMAGYFLAVNPSYL 260
>gi|300857636|ref|YP_003782619.1| hypothetical protein cpfrc_00219 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685090|gb|ADK28012.1| hypothetical protein cpfrc_00219 [Corynebacterium
pseudotuberculosis FRC41]
Length = 207
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 5/153 (3%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE--MLLTIAEL 229
+ S R LDL CV+SG++ Q+ VA L L
Sbjct: 52 ADRLSSDFLRKSAYQLDLFAACVQSGLTPSQSAFAVAATEESSPRDARVRSGWLEVAMML 111
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A+++ + + S+R G ++ ++ L + R+ +
Sbjct: 112 EMGMPAERAWQSLAE---HPALGDLVTVARASERSGATLAEACERLARQLRARASDLSLA 168
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+A G + +P+ + FLP L+ + P ++S+
Sbjct: 169 RAERAGVLIALPLTVCFLPAFFLLGLAPVVISL 201
>gi|124486274|ref|YP_001030890.1| hypothetical protein Mlab_1458 [Methanocorpusculum labreanum Z]
gi|124363815|gb|ABN07623.1| type II secretion system protein [Methanocorpusculum labreanum Z]
Length = 625
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/315 (15%), Positives = 128/315 (40%), Gaps = 19/315 (6%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSAS 69
D LA+ + + I ++I+ +++ +LG + KR++ + + I ++D
Sbjct: 254 DPMILAIVVYLMLPIGTVIFLLLLDALGQTYIIKRVQMPRSTVPLYPQLTIVEAEEDE-- 311
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
T + L+ + K+L + + + E + + + I ++
Sbjct: 312 ----TPLFEKLKKYDKRLKYMEFIRHPRLAIR--------EEPALVFVFSIPLSLITGVV 359
Query: 130 LGI-IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + ++ + Y + + V V+++ + P +R ++ A PD
Sbjct: 360 LYVSTVKVFFNPYMIYQWGMAVDDVVVVMLLVALMPYAISYRNYVRRIDKVEGALPDFCR 419
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L V+ +++ A+ A++ + E++ + +L + A + F +R +
Sbjct: 420 QLSSLVKYNMTLTHAIELTAQEGKS---YIQEDIRILSRDLLWGEKLSSALKRFADRMKN 476
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V L Q++ + + ++ + E ++ ++ E+K+ +G + + + F +
Sbjct: 477 LSVDRLVILLSQTEHFTNDLSLTIDLQYHEAKARESLKRERKSD-MGVYVVIVFMAFAVF 535
Query: 309 VLILVIIGPAILSII 323
V + VI+ L+I+
Sbjct: 536 VFVQVIMSEVFLNIM 550
Score = 63.3 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 8/210 (3%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP------FQLRVGAVILIGYVGFCAPSV 166
+ + ++ + LI+ ++ F L P + L G +L + A
Sbjct: 35 ARVFGFIASILIVFALIVIDVFFFPVANLFTDPEYIIFTYPLTAGIAVLANVAVYYAIIS 94
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ ++ R+ I+ + + + + G ++ ++ +A+ ++E +
Sbjct: 95 YPKLEMRSRKRFIEASMYEMVSFMYALHHCGATLYASVHSIAK-YADFYGDAAKEFRQVV 153
Query: 227 AELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+++ F ++ A + + T D +R L + R + L + E + E +
Sbjct: 154 SDMDFCGYDQFTAIQRLADTTPSDKLRFFLSELSSTYRSIGNAEVFLHGKLQEMQKESEV 213
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+SLG + + +F L +VI+
Sbjct: 214 AQRSYLSSLGAIAEMYITLFVAGPLFVVIV 243
>gi|73539234|ref|YP_299601.1| type II secretion system protein [Ralstonia eutropha JMP134]
gi|72122571|gb|AAZ64757.1| type II secretion system protein [Ralstonia eutropha JMP134]
Length = 312
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/279 (13%), Positives = 88/279 (31%), Gaps = 19/279 (6%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
V +L +K+ A + +R + + + + + ++ +
Sbjct: 19 VTSLGLLLLANAQARARKEQADAFVRAQTEQVRLRYAAGQDPQLQQPARDLKRRWEDFLR 78
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R++ N V+ P + L L + G + +
Sbjct: 79 RADLVPNRRTYVKWGGPCVLLTLAALASGGVLGAAAMAVVCAAVS------------AFV 126
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ N V++ + + P LD ++ + G S+ A + I PL + ++ +
Sbjct: 127 LWNRVRRIRQKMLLQLPGFLDGVVRLMTIGSSVPAAFQ---NSIANTDAPLRQCLVQAVH 183
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
A + + L S RYG + + R +
Sbjct: 184 LQRAGKELDQAVLQMGRIYHLQELVLLASVLRLSVRYGGRADVMMERTAAFMRDREQAQR 243
Query: 288 EKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAILSII 323
E A S +L+ I+ LP+++ L ++ + ++
Sbjct: 244 ELMALSAETRLSA-WILGLLPLVVGGGLFVLNAGYVLMM 281
>gi|313824568|gb|EFS62282.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA2]
Length = 300
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGSLLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVDLAAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRVVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALTRAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + A +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLARIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|167919155|ref|ZP_02506246.1| type II secretion system protein [Burkholderia pseudomallei BCC215]
Length = 256
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 66 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 122
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 123 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 182
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 183 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 225
>gi|313817686|gb|EFS55400.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA2]
gi|314961706|gb|EFT05807.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA2]
gi|315086656|gb|EFT58632.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA3]
Length = 300
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGSLLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVDLAAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRVVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALTRAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + A +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLARIRMTLERSRLEQQSPWAGLDELSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|88604391|ref|YP_504569.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88189853|gb|ABD42850.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 329
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 81/215 (37%), Gaps = 4/215 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+L V + ++ I+G+ + + + + + P L
Sbjct: 49 PINILYVSVPAGLLVFIIGLSMVIQQGGPEAILTNSFIDDIAVFTTIIIVGPLAITDLLE 108
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+R SSI+ A P+ L ESG+++ A+ V++ + L+ + +S+
Sbjct: 109 GRRISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQ---AEYGALTPHIRQLDQRISWN 165
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + V + + ++ G I + LR ++ +M+ ++K
Sbjct: 166 FAFIDAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKDSAEYVVMKTDRKNN 225
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + + + F + + +++I+ + L + +
Sbjct: 226 -MFIYVIIILASFAVFLFVVMILVSSFLKTMADLG 259
>gi|220913152|ref|YP_002488461.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860030|gb|ACL40372.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 285
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 10/177 (5%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ L+ Y + G P + +KR + +++ WPD +D L + +G
Sbjct: 64 FVVLVFYAVSRSWPIAVCFGLFAGWLPLTILRWRAKKRTALLRQLWPDVVDHLRSAIRAG 123
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ + +AL ++ + L A+ + + NR +A
Sbjct: 124 LPLPEALIQLGDK---GPEELRPVFREFGADYRAGGQFDGSLDKLKNRLADPVADRIVEA 180
Query: 258 LIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGP------KLTVPMIIFFL 307
L + G +G L L R +E +A + P I+ L
Sbjct: 181 LRLTREVGGSDLGKLLGTLAEFLRENARTRSELEARQSWTVNAARLAVAAPWIVMLL 237
>gi|86360425|ref|YP_472313.1| hypothetical protein RHE_PE00149 [Rhizobium etli CFN 42]
gi|86284527|gb|ABC93586.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 321
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 65/195 (33%), Gaps = 5/195 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+IL L + +++ V P I +Q+R I+ P A+
Sbjct: 95 MILAYAITAIIVFSLISLIFGPIVGIVVAIPVAVFLPKATIRYFLQRRWLQIESQLPYAV 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V +G + A+ VA+ +P S E E A +
Sbjct: 155 DQIVSAVRTGKPLAVAVNAVADTGQ---MPASREFERIAREQKLGIGLVEALDRHGRTVP 211
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF-- 305
+ AL R G I + L + + ++ + +S ++ ++
Sbjct: 212 SLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKISTSSSQARMNFRVVNGGA 271
Query: 306 FLPVLILVIIGPAIL 320
+L++ P ++
Sbjct: 272 LFMILMIFFGQPELI 286
>gi|331014705|gb|EGH94761.1| hypothetical protein PLA106_02335 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 295
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 82/254 (32%), Gaps = 15/254 (5%)
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-------I 132
+ + E + +L AG + L + LG +
Sbjct: 16 MASVRMFYLALNQGASERVRQRLT-AGHVQPAAAEKAGWSYLDRAFLRAGLGKATERTGL 74
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ + + + V++S ++R + + P LD +
Sbjct: 75 ALTLYALLIVLGYWLGGGLGAVSMLLAVPLVVRVFVSWRYERRVRRMIQQLPQLLDHTVR 134
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++SG ++ A+ I PL + M + + A +F + D
Sbjct: 135 SLKSGRTLADAVLHG---IEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELYERDEFH 191
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + RYG + + + L+ R + +A + ++T +++ LPV +
Sbjct: 192 LFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGLLPVSMA 250
Query: 313 ---VIIGPAILSII 323
+ + P L +
Sbjct: 251 GYFLAVNPDYLLQM 264
>gi|145596964|ref|YP_001161261.1| type II secretion system protein [Salinispora tropica CNB-440]
gi|145306301|gb|ABP56883.1| type II secretion system protein [Salinispora tropica CNB-440]
Length = 288
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 7/267 (2%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR----AAGFRSEYSLNI 115
L A R + + + + + LR
Sbjct: 25 RELLPATPALGPALRRLHQPSGSHPARPADHRLEWLTELARWLRPPHQQLALLGRTPEQY 84
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L + L I ++ + + P + V + + V + +
Sbjct: 85 ALSLLLSALIGLASPTLLSVTFAVTGVGLPVAVPVLGSLGLALVCAWLAHRAVLTKAEAA 144
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+S + A LDL+ + + + Q+L R AE G E L + +
Sbjct: 145 RSEFRAAVCTYLDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRESLRLAQLQ--MHSP 202
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
++ + + + + S G + ++LR R + + +A +
Sbjct: 203 WDELRELADQIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVT 262
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSI 322
+L +P + VL+ P + +
Sbjct: 263 GRLDIPGALLVF-VLLGFATYPFLARL 288
>gi|73668275|ref|YP_304290.1| transporter [Methanosarcina barkeri str. Fusaro]
gi|72395437|gb|AAZ69710.1| transporter [Methanosarcina barkeri str. Fusaro]
Length = 660
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+I V P + + R I PD L L ESGI + +L+ ++E G
Sbjct: 424 FVIFIVVALIPFIIFYEIKAWRMRKIDEKMPDFLKSLSSMNESGIMLANSLKIISESKMG 483
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
LS+E+ +LS+ + A N N + +++++ + + + L
Sbjct: 484 I---LSKELKKLKEDLSWGTSTSKALMNLENSIKTPSSSRILHIIVKANESTSDLKNVLS 540
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + R++ M+ +++++++ + + FF+ + I+ I+
Sbjct: 541 ITAKQARNDEDMK-KERSSTMVVYVITIYVAFFVFLFIVYILA 582
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 60/172 (34%), Gaps = 3/172 (1%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + ++ +V F ++ RQ+SI ++ A+ + + G+SI
Sbjct: 97 LALLVGLILFLVSFFVVFLVAYIYPYFQANNRQASIDKSMLPAITYMYALTKGGMSIYDV 156
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
R ++ +EE+ + ++ + + + RT + ++ LI
Sbjct: 157 FRSLSRYSY-IFGATAEEISYVVRDMDYLGKDFITSLKIAKERTPSEIFKDFVDGLIIVS 215
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
GT I + ++ + + M L + + L +++
Sbjct: 216 SSGT-ITEYVKNKSEQYQGLAEMANRNLLQRLDVLAEIYVTALVAGPLFVMV 266
>gi|331086801|ref|ZP_08335878.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409967|gb|EGG89402.1| hypothetical protein HMPREF0987_02181 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 431
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 7/183 (3%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ +G ++ + ++K++ + +P+ L+ ++ + +G+++ A +++
Sbjct: 250 VILGLGLVGSILLILLEKETQKEEMKKKKKQMMIDYPEILNKFVLFLGAGMTVKAAWQKI 309
Query: 208 AEDIG-----GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+ D G+ EEM T+ E+ + + +E+F R + C L Q+
Sbjct: 310 SSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKECYEHFGKRCEAVCYMRFGALLSQNL 369
Query: 263 RYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ G+ + D LR+ ER A+K +G KL PM F L V+++++I PA LS
Sbjct: 370 KRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGTKLLAPM-FFMLTVVLVIVIVPAFLS 428
Query: 322 IID 324
+
Sbjct: 429 MQF 431
>gi|315654444|ref|ZP_07907352.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315491479|gb|EFU81096.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 408
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/293 (17%), Positives = 100/293 (34%), Gaps = 15/293 (5%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS--LRNFVKKLNLKAILVD 95
L +R+ R ++A+ LR + L V
Sbjct: 125 RSGLWERLNHWRAGRTAETNPLARVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVA 184
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ I L A R + RL+ + LG+ G D + V +
Sbjct: 185 DGIAATLETAAKRHTAQVGPKATARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFV 244
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPD--ALDLLLICVESGISIDQALRRVAEDIGG 213
IG A ++W + ++++ S A+D++ C ++G+S+ L+ V+
Sbjct: 245 IGLGLMVAGNLWSAAMIRQATGSSVTGLDPTLAMDIIAACQQNGVSLTSTLQAVSAASEE 304
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ + L + A+ ++ + L + G S L
Sbjct: 305 AD------LAVVARMLLLGADWDEAWAQADSKW-----VDLASVLQPAWEEGASPVPLLV 353
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S TR+ + A A LG +L +P+ + LP + I P ++S I+ +
Sbjct: 354 RGASRTRTAEIHRAVDAAERLGVRLMIPLGVCLLPAFFALGIVPVVVSTIEDL 406
>gi|294496203|ref|YP_003542696.1| type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
gi|292667202|gb|ADE37051.1| Type II secretion system F domain protein [Methanohalophilus mahii
DSM 5219]
Length = 641
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 67/167 (40%), Gaps = 4/167 (2%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I+ + P + + ++ S ++ P+ L L E+GI + A+ V+
Sbjct: 405 IVFSFFIISIPFIVFYEIKRRWVSKVESEMPEFLKKLASINEAGIRLSSAITLVSR---S 461
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L+ E+ + LS+ N + + F R + + +I++ + + L
Sbjct: 462 KIGVLNIEIKKMASHLSWGGNLEEVLKKFEYRVRTEFNSRIITFIIKASESTSDVISVLN 521
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+ SE + +++A + + + + F + + I+ ++ L
Sbjct: 522 IAASEA-EMQSQLKRERSAEMTVYVFIVYVAFLVFLFIVYVLAAYFL 567
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/274 (11%), Positives = 82/274 (29%), Gaps = 28/274 (10%)
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
K + + + L++A R + + +I + I
Sbjct: 3 PFQDIAYRLFGKHAYQKKDEYPKLYHSLKSA--RFPIPADQYISTGYFYSLISFFITGII 60
Query: 135 IFGYDKLLEYPFQLRVG-----------------AVILIGYVGFCAPSVWISNLVQKRQS 177
+ L + + ++ + P +W S
Sbjct: 61 FYFIASRLFKILDISIIDDMRIIAILSSLIIALLFSTILFNIQMKLPLLWASTRKAYLDQ 120
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQ 236
S+ A + G+S+ + +++ ++E I ++ + +
Sbjct: 121 SLTHAVAYLY---ALSKGGGMSLFDIFKSLSQQ-RHIYGVAADEFGYIIRDMEYFGYDML 176
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR----SERLMEAEKKAA 292
A +N + + + +N ++ G + L+ E R E+ E A
Sbjct: 177 TALKNANDNSPSEKYKNFLDGMLSIVSSGGDVTSYLKNKSEEYRFLASREQKTFLETLAI 236
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+TV ++ + IL+++G + +D +
Sbjct: 237 LAEVYITVFVVGPIFLITILIVLGFMGSNSLDVL 270
>gi|116255774|ref|YP_771607.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115260422|emb|CAK03526.1| putative transmembrane pilus component protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 318
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 5/195 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+IL ++ + ++ V P I +Q+R I+ P A+
Sbjct: 92 MILAYGITAIVVFIVISLIFGPIFGFVIAIPVAIFLPKGVIRYYLQRRWLQIESQLPYAV 151
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V +G + A+ VA+ +P S E E A +
Sbjct: 152 DQIVSAVRTGKPLAIAVNAVADTGQ---MPASREFERIAREQKLGIGLVEALDRHGRNVP 208
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF-- 305
+ AL R G I + L + + ++ + +S ++ ++
Sbjct: 209 SLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKITTSSSQARMNFRVVNGGA 268
Query: 306 FLPVLILVIIGPAIL 320
+L++ P ++
Sbjct: 269 LFMILMIFFGQPELI 283
>gi|289427557|ref|ZP_06429270.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|289159487|gb|EFD07678.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|313806903|gb|EFS45401.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA2]
gi|313821487|gb|EFS59201.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA1]
gi|313826239|gb|EFS63953.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA1]
gi|314926289|gb|EFS90120.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA3]
gi|314980210|gb|EFT24304.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA2]
gi|314987066|gb|EFT31158.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA2]
gi|314990441|gb|EFT34532.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA3]
gi|315083128|gb|EFT55104.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA2]
gi|315088060|gb|EFT60036.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA1]
gi|327333719|gb|EGE75436.1| membrane associated protein [Propionibacterium acnes HL096PA3]
gi|327444422|gb|EGE91076.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA2]
gi|328757929|gb|EGF71545.1| type II secretion system F domain protein [Propionibacterium acnes
HL020PA1]
gi|332674442|gb|AEE71258.1| type II secretion system protein [Propionibacterium acnes 266]
Length = 300
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGSLLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVDLAAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRVVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALTRAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + A +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLARIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|238897545|ref|YP_002923224.1| putative tight adherance operon protein B [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465302|gb|ACQ67076.1| putative tight adherance operon protein B [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 300
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 7/195 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ + I+ F + L L +I + +K +P
Sbjct: 73 ILLPLFCFIFAFFINHFLFKLSYLLCFVFAIIFIAFIIFIQILYYKKQKK--IYFTETFP 130
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L + + SGIS+++ L++ ++I G L +E L LS N F + Y
Sbjct: 131 ELLLIFNMGSVSGISVNEILKKAGQEIKGG---LGKECDLIFRRLSIGENINTVFYDAYQ 187
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R L+ + G + + + L + ME K A + ++++ ++
Sbjct: 188 RFSYPEFYMFINILMLNINQGGQLRELMHRLNQVVTNYNKMEKRKMAMTGEIRMSIWVVT 247
Query: 305 FFLPVLILV--IIGP 317
+ + P
Sbjct: 248 LIPVIFFAFSYFMNP 262
>gi|167902895|ref|ZP_02490100.1| type II secretion system protein [Burkholderia pseudomallei NCTC
13177]
Length = 264
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 74 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 130
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 131 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 190
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 191 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 233
>gi|315107453|gb|EFT79429.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA1]
Length = 300
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGALLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVGPVAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRMVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALARAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + A +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQYAAEAVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLARIRMTLERSRLEQQSPWAGLDELSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|218848410|ref|YP_002454972.1| hypothetical protein BCAH820_B0088 [Bacillus cereus AH820]
gi|218540461|gb|ACK92857.1| conserved hypothetical protein [Bacillus cereus AH820]
Length = 300
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/314 (18%), Positives = 118/314 (37%), Gaps = 33/314 (10%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
VA A+ +F ++Y V L S K + + ++K + + +
Sbjct: 13 VATILALVVFVVMYWVFSTFLQS-------KKDSGSLLTNYVENAKRIEKKNLNQMMLAP 65
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ E I KL AG ++ L +++ PIIF + +I
Sbjct: 66 FQSLSHKYLT------EEKKELIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICT 117
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+D L +LI + + P + +++ + K P+ L +L ++
Sbjct: 118 VFHDYYLFK-------VGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLK 170
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ +++ + A+ G+ L + AEL F NF V T
Sbjct: 171 THTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFT 226
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--V 313
AL Q+ + T SLR++ ++ + R ++ E + K PM + V ++ +
Sbjct: 227 IALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCI 281
Query: 314 IIGPAILSIIDTMK 327
+I P ++ I M+
Sbjct: 282 VIYPMVIVIQSLMQ 295
>gi|238027559|ref|YP_002911790.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
gi|237876753|gb|ACR29086.1| Flp pilus assembly protein TadB [Burkholderia glumae BGR1]
Length = 338
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 7/199 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L ++ +L + A G +W+ + R+ I + P L
Sbjct: 113 GLLYVLAGLVLLAMLVAGARGGGVAAGAALLGGVALACLWVLRRISARRLKIVQQLPSFL 172
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V G S+ A + +G +PL + L A + +
Sbjct: 173 DGVVRLVTLGNSVPAAFQGA---LGTTEMPLRRCLDQVSRMLRTGVEIDRAMLHIAKEYR 229
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ L S +YG L + + R E E A S +L+ ++ L
Sbjct: 230 VREFELVGSVLRLSVKYGGRADVMLERMATFMRDLEQAERELHAMSAETRLSA-WVLGLL 288
Query: 308 PVL---ILVIIGPAILSII 323
PV +V P + +
Sbjct: 289 PVAVGSFVVSTNPQYFTAM 307
>gi|227872977|ref|ZP_03991276.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
F0268]
gi|227841193|gb|EEJ51524.1| Flp pilus assembly protein TadB family protein [Oribacterium sinus
F0268]
Length = 284
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/212 (14%), Positives = 71/212 (33%), Gaps = 13/212 (6%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR---------VGAVILIGYVGFCAPSV 166
I I G + + Y V +++ GF +
Sbjct: 32 FREKLQAFAIALFIGGAVSLVFYGNQFLDATGRATKATMYGNIVIFLLVGSLCGFFFLPI 91
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEML 223
+KR + R + L+ L + + SG+++ +L +D+ + +++E
Sbjct: 92 RAGQCKEKRLKELARQFRGFLESLAVALASGMNMHDSLDSTYKDMVMEFGEDEKITKETA 151
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
I L + + R+ + N S R G +I + +R +
Sbjct: 152 EMILGLRNNLAIEDMMLSLGKRSANKDIENFAIIFNVSYRAGGNIKEIVRRTADIIGEKM 211
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ E + A K+ ++ +PV++ ++
Sbjct: 212 EISEEIQTAISSNKIQFTAMM-IIPVVLTGML 242
>gi|28871969|ref|NP_794588.1| hypothetical protein PSPTO_4854 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213968013|ref|ZP_03396159.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301383671|ref|ZP_07232089.1| hypothetical protein PsyrptM_13603 [Pseudomonas syringae pv. tomato
Max13]
gi|302059960|ref|ZP_07251501.1| hypothetical protein PsyrptK_08210 [Pseudomonas syringae pv. tomato
K40]
gi|302131626|ref|ZP_07257616.1| hypothetical protein PsyrptN_09547 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28855222|gb|AAO58283.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927356|gb|EEB60905.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 295
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 82/254 (32%), Gaps = 15/254 (5%)
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG-------I 132
+ + E + +L AG + L + LG +
Sbjct: 16 MASVRMFYLALNQGASERVRQRLT-AGHVQPAAAEKAGWSYLDRAFLRAGLGKATERTGL 74
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ + + + V++S ++R + + P LD +
Sbjct: 75 ALTLYALLIVLGYWLGGGLGAVSMLLAVPLVVRVFVSWRYERRVRRMIQQLPQLLDHTVR 134
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
++SG ++ A+ I PL + M + + A +F + D
Sbjct: 135 SLKSGRTLADAVLHG---IEATDQPLKDGMSRIELNVQLGVSLPDAVRDFAELYERDEFH 191
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + RYG + + + L+ R + +A + ++T +++ LPV +
Sbjct: 192 LFALGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-IVLGLLPVSMA 250
Query: 313 ---VIIGPAILSII 323
+ + P L +
Sbjct: 251 GYFLAVNPDYLLQM 264
>gi|238922470|ref|YP_002935983.1| hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
gi|238874142|gb|ACR73849.1| Hypothetical protein EUBREC_0044 [Eubacterium rectale ATCC 33656]
Length = 408
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV-------PLSEEMLLT 225
++R ++ +P+ + + + + SG++++QA R+ + P EEML+T
Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVT 309
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
E+S + A+ F R ++ C + + ++QS G+ + + L + ER
Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERR 369
Query: 285 MEAEKKAASLGPKLT 299
+ A K G K+
Sbjct: 370 LLALKLGEEAGTKML 384
>gi|315657630|ref|ZP_07910512.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492102|gb|EFU81711.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 408
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/293 (17%), Positives = 100/293 (34%), Gaps = 15/293 (5%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS--LRNFVKKLNLKAILVD 95
L +R+ R ++A+ LR + L V
Sbjct: 125 RSGLWERLNHWRAGRTAETNPLARVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVA 184
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ I L A R + RL+ + LG+ G D + V +
Sbjct: 185 DGIAATLETAAKRHTAQVGPKATARLLGVLPLAALGMAQFIGVDVIDMAFQGGINTWVFV 244
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPD--ALDLLLICVESGISIDQALRRVAEDIGG 213
IG A ++W + ++++ S A+D++ C ++G+S+ L+ V+
Sbjct: 245 IGLGLMVAGNLWSAAMIRQATGSSVTGLDPTLAMDIIAACQQNGVSLTSTLQAVSAASEE 304
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ + L + A+ ++ + L + G S L
Sbjct: 305 AD------LAVVARMLLLGADWDEAWAQADSKW-----VDLASVLQPAWEEGASPVPLLV 353
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S TR+ + A A LG +L +P+ + LP + I P ++S I+ +
Sbjct: 354 RGASRTRTAEIHRAVDAAERLGVRLMIPLGVCLLPAFFALGIVPVVVSTIEDL 406
>gi|291526238|emb|CBK91825.1| hypothetical protein EUR_28800 [Eubacterium rectale DSM 17629]
Length = 408
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI-------GGQSVPLSEEMLLT 225
++R ++ +P+ + + + + SG++++QA R+ +P EEML+T
Sbjct: 250 KERNIQLQLEYPEIVSKMAVLMGSGMTVEQAWNRITARYLDKRKNNDENIMPAYEEMLVT 309
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
E+S + A+ F R ++ C + + ++QS G+ + + L+ + ER
Sbjct: 310 EREISDGVTGRKAYAGFAERVKLPCYQKLVRIILQSIHKGSKGVCEMLKKESEDAFDERR 369
Query: 285 MEAEKKAASLGPKLT 299
+ A K G K+
Sbjct: 370 LLALKLGEEAGTKML 384
>gi|50841534|ref|YP_054761.1| membrane associated protein [Propionibacterium acnes KPA171202]
gi|295129572|ref|YP_003580235.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|50839136|gb|AAT81803.1| membrane associated protein [Propionibacterium acnes KPA171202]
gi|291376741|gb|ADE00596.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|313771159|gb|EFS37125.1| type II secretion system F domain protein [Propionibacterium acnes
HL074PA1]
gi|313811815|gb|EFS49529.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA1]
gi|313832351|gb|EFS70065.1| type II secretion system F domain protein [Propionibacterium acnes
HL007PA1]
gi|313832810|gb|EFS70524.1| type II secretion system F domain protein [Propionibacterium acnes
HL056PA1]
gi|314975243|gb|EFT19338.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA1]
gi|314977658|gb|EFT21753.1| type II secretion system F domain protein [Propionibacterium acnes
HL045PA1]
gi|314985157|gb|EFT29249.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA1]
gi|315081600|gb|EFT53576.1| type II secretion system F domain protein [Propionibacterium acnes
HL078PA1]
gi|315097117|gb|EFT69093.1| type II secretion system F domain protein [Propionibacterium acnes
HL038PA1]
gi|327332546|gb|EGE74281.1| membrane associated protein [Propionibacterium acnes HL096PA2]
gi|327446675|gb|EGE93329.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA2]
gi|327448882|gb|EGE95536.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA1]
gi|328759745|gb|EGF73341.1| membrane associated protein [Propionibacterium acnes HL099PA1]
Length = 300
Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGALLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVGPVAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRMVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALARAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + A +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLARIRMTLERSRLEQQSPWAGLDELSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|110626526|gb|ABG79010.1| TadB [Yersinia ruckeri]
Length = 296
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+++ ++P+ L ++ + SG +++Q L R ++I G L E L L+
Sbjct: 115 KQKNKHFNESFPEVLTIMNMAASSGANLNQILERCGKEIQG---ELGNEFNLIYRRLNLG 171
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
++ F + Y + T ++ + + G + D ++ + ++ K
Sbjct: 172 EAPEIVFNDAYRKFNYAEFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIM 231
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ ++T ++ +P++ + + I+T+
Sbjct: 232 TAQIRMT-TNVVSLIPIVFTAFLYYIDPNSIETLWSQ 267
>gi|206559897|ref|YP_002230661.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035938|emb|CAR51830.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 326
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 7/165 (4%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+WI++ + +R+ I R P LD ++ V G S+ A + + +PL
Sbjct: 135 VLVVLWITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQ---SALQTAEMPLRRC 191
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ L A + + ++ L S RYG L + + R
Sbjct: 192 LDDVSQMLRSGVEIDRAMLHIAHTYRIREFELVGAVLRLSVRYGGRADVMLDRMSTFMRD 251
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LP+ ++ P + +
Sbjct: 252 LEQAERELSAMSAETRLSA-WVLALLPIAVGSFVIATSPRYFTAM 295
>gi|229020883|ref|ZP_04177582.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273]
gi|229027757|ref|ZP_04183938.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272]
gi|229035195|ref|ZP_04189131.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271]
gi|228728087|gb|EEL79127.1| hypothetical protein bcere0028_52130 [Bacillus cereus AH1271]
gi|228733549|gb|EEL84352.1| hypothetical protein bcere0029_59420 [Bacillus cereus AH1272]
gi|228740415|gb|EEL90714.1| hypothetical protein bcere0030_53420 [Bacillus cereus AH1273]
Length = 288
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 118/314 (37%), Gaps = 33/314 (10%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A A+ +F ++Y V L S K + + ++K + + +
Sbjct: 1 MATILALVVFVVMYWVFSTFLQS-------KKDSGSLLTNYVENAKRIEKKNLNQMMLAP 53
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ E I KL AG ++ L +++ PIIF + +I
Sbjct: 54 FQSLSHKYLT------EEKKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICT 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+D L +LI + + P + +++ + K P+ L +L ++
Sbjct: 106 VFHDYYLFK-------VGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLK 158
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ +++ + A+ G+ L + AEL F NF V T
Sbjct: 159 THTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFT 214
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--V 313
AL Q+ + T SLR++ ++ + R ++ E + K PM + V ++ +
Sbjct: 215 IALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCI 269
Query: 314 IIGPAILSIIDTMK 327
+I P ++ I M+
Sbjct: 270 VIYPMVIVIQSLMQ 283
>gi|283457756|ref|YP_003362343.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
gi|283133758|dbj|BAI64523.1| Flp pilus assembly protein TadB [Rothia mucilaginosa DY-18]
Length = 315
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 20/243 (8%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
D +V LR AG S + + V + + +L ++ L
Sbjct: 57 KPPKPSNDPALVVALRKAGMHS-LTPRTFMWVSVASGVTASVLLLMVTQLLPLGLLGLIG 115
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
GF AP V +++ + + I + WPDA+D L + +G+S+ +AL ++
Sbjct: 116 ------------GFVAPRVVVNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQL 163
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT- 266
+ L + + + +AL + G
Sbjct: 164 S---YRGPEELRDAFAHFSRDYRASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGS 220
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIID 324
+G L L R +E A + + P +L ++ PA + +
Sbjct: 221 DLGKLLGTLSDFLRDNARTRSELLARQSWT-VNAARLSCVAPWFVLCLMATQPAARMVYN 279
Query: 325 TMK 327
+
Sbjct: 280 SFA 282
>gi|330873866|gb|EGH08015.1| type II secretion system protein F domain [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 198
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+++S + R + + LD + ++SG ++ A+ I PL + M
Sbjct: 10 RLFVSWRYEVRVRRMIQQLAQLLDHTVRSLKSGRTLADAVLHG---IEATDQPLKDGMSR 66
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + A +F + D L + RYG + + + L+ R
Sbjct: 67 IERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLIKLIRDREQ 126
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAIL 320
+ +A + ++T +++ LPV + + + P+ L
Sbjct: 127 AGRQLRAMTGETRMTA-LVLALLPVGMAGYFLTVNPSYL 164
>gi|330976794|gb|EGH76830.1| type II secretion system protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 294
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G+ L V + + V++S + R + + P LD
Sbjct: 71 MGLALSLYALLKLIGYAPAGVVGALSVLLAVPLTLRVFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVLHG---IDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP- 308
L + RYG + + + L+ R + +A + ++T +++ LP
Sbjct: 188 EFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-VVLALLPI 246
Query: 309 --VLILVIIGPAIL 320
+ + P L
Sbjct: 247 STAGYFLAVNPNYL 260
>gi|327401124|ref|YP_004341963.1| Type II secretion system F domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316632|gb|AEA47248.1| Type II secretion system F domain protein [Archaeoglobus veneficus
SNP6]
Length = 647
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/323 (14%), Positives = 115/323 (35%), Gaps = 11/323 (3%)
Query: 3 HYFFDLFDATELAVAITTAVSIFSLI--YAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
Y + I T + + + + ++ ++ ++
Sbjct: 259 SYITAFVAGPLFLIIIQTVMVVMGQGDETTLYAVIYLVIPIGSFFFAMVIKLLTPTEEGE 318
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
++ + R + + + +K L+ + LR + + +
Sbjct: 319 PPKLREKYTYLRRKVEEREFSDQIK--ELRKRINSWKFRKALRHPLDPIKRRPMYVFIFS 376
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ + F+ G Y + + +V I + V AP V +K+
Sbjct: 377 IPAGLAFMFYGF---SRYQFSPDIQWLFKVDDYIFLSLVIILAPFVVFYEAGRKKAKRTL 433
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R P L+ L ESG+ I +A+ +A+ + PL +E+ ++L + + A
Sbjct: 434 RLTPIFLNKLASANESGMPIYRAIAMIAK---TDTTPLKKEIQKIKSDLDWGISLNDALI 490
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F NR ++ + L ++ + ++ + L + + + L+ E+ + + + +
Sbjct: 491 RFANRLRVFELSRTITLLNEALKSTGNVTEVLMISAKDASNAELLRRERLSN-MFMYVII 549
Query: 301 PMIIFFLPVLILVIIGPAILSII 323
I FF+ + I+ II LS +
Sbjct: 550 IYISFFVFIGIVYIITTTFLSTL 572
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/262 (15%), Positives = 85/262 (32%), Gaps = 29/262 (11%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAA--GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ K + ++ +LR A E + +V L+ ++ ILG+I +
Sbjct: 14 KLFGESIRKNVQKYYDLEKQLRQAMISMPPEMYIATARMVSLIFAVVGAILGLIISYIVI 73
Query: 140 KLLEYP-------------------------FQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ P L + + + G+ +++ S ++
Sbjct: 74 FFIGLPEVIFPIALPEPIYSFWMNFRAFVFAALLCAMITVALYFAGYFMFTIYPSTVISD 133
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLP 233
R+S I RA P A+ + G+++ + R ++E +S E + ++
Sbjct: 134 RKSKIDRALPHAITFMYSLSRGGMNLIEIFRALSEYYE-VYSEVSREAARILRDMEVLGK 192
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A + + + + LI G I L + +
Sbjct: 193 DLRTALADAVELSPSENFKEFLHGLITIIDSGGDITKYLEDRADFYLERARQDQKNFLEF 252
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
LG + F L L+II
Sbjct: 253 LGLMAESYITAFVAGPLFLIII 274
>gi|212224828|ref|YP_002308064.1| hypothetical protein TON_1677 [Thermococcus onnurineus NA1]
gi|212009785|gb|ACJ17167.1| conserved hypothetical membrane protein [Thermococcus onnurineus
NA1]
Length = 304
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 5/220 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + + + ++ + L+ F ++ A+ +
Sbjct: 23 MWLKRYEVFIYSAGINFLAVEYLVVSFLVGIIGALVVDLFLTKLYALAAFLALFLGMAFG 82
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + KR +++ PDA L + +GIS +AL E + L+EE T+
Sbjct: 83 YPYWKITKRIEEMEKMLPDAFFYLASSLRAGISFSEALE---ELTTAKFGALTEEFKKTV 139
Query: 227 AELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
AE+ + A F R + + + +I++ G + D L + ++ R +
Sbjct: 140 AEIKKGRSTVEALRAFAIRNRKSTVIYRSMMIIIEAIERGAPMSDILVFVGNDVREILRI 199
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ E+KA++ + + F+ LIL I+ ++ + T
Sbjct: 200 KKERKASTGMQVMFFIVTSGFIGPLILGIVS-QVMGAMST 238
>gi|290558836|gb|EFD92228.1| hypothetical protein BJBARM5_1029 [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 233
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 79/211 (37%), Gaps = 8/211 (3%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
KKL + + L A +Y I + + + ++ L+ G+ +
Sbjct: 17 FFGKKFKKLAFNFKGIVPTLKQDLIQASMSIDYLDYIAAGIVVALVLVGLMAGVSGLIIL 76
Query: 139 DKLLEYPFQLRV-----GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + +++ + ++ V F + KR I+ A+ ++I
Sbjct: 77 IAIKKNLLTIKIEAILPVLIFVVPAVYFFYFLNFPKLQAVKRTKLIEEQVVFAIREIMIK 136
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V SG+ I AL VA G +S+E L + E+ + A ++ R +R
Sbjct: 137 VGSGVPIFNALLDVAN---GNYGIISDEFKLAVEEIESGVPQNDALDHLARRVPSQSLRR 193
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
A ++ + + G+ I +L ++ ++
Sbjct: 194 AIDIILYAIKSGSDIAGTLELIHDMLIKKQQ 224
>gi|167581956|ref|ZP_02374830.1| pilus assembly protein, putative [Burkholderia thailandensis TXDOH]
Length = 219
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 5/159 (3%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 31 YRMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMGD 87
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L + + E R Q+ L G ++ ++L L R+ R +
Sbjct: 88 ALRVGADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRM 147
Query: 288 EKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ + ++
Sbjct: 148 KTRALTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLF 186
>gi|332158911|ref|YP_004424190.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
gi|331034374|gb|AEC52186.1| hypothetical protein PNA2_1271 [Pyrococcus sp. NA2]
Length = 305
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/239 (17%), Positives = 96/239 (40%), Gaps = 19/239 (7%)
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ ++++ K L ++ L +AG + S + + L + II I +
Sbjct: 10 KVTKAIERIVPKKYLKRYDL--LLYSAGIDFKAS--EYIAISLALGIIGGATVFILVNSV 65
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
LL + +++ + P+ + KR ++RA PDA L + +G+
Sbjct: 66 KLLL-------ISFLVIFATFLYVYPNF----RIIKRIEEMERALPDAFFYLAGSLRAGV 114
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQA 257
S +AL ++ + L+ E + T+AE+ A F R + + +
Sbjct: 115 SFSEALEELST---AKFGALTREFMRTVAEMKRGRPTVDALRAFALRNKRSPIIYRSMMI 171
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+I++ G + D L + ++ R ++ E+KA++ + F+ I+ ++
Sbjct: 172 IIEALERGAPMADVLVAVGNDVREILRIKNERKASTGMQMMFFLTSGGFVGPFIVAVVS 230
>gi|33596972|ref|NP_884615.1| hypothetical protein BPP2379 [Bordetella parapertussis 12822]
gi|33566423|emb|CAE37676.1| putative membrane protein [Bordetella parapertussis]
Length = 306
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 76/263 (28%), Gaps = 22/263 (8%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
R + +L R + + + + + L AG
Sbjct: 24 RQARDGARRQASEAFLERQLELRPGQPEASQAPAARRRLPISNGAWRQLLLRAGV---EP 80
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + + L ++ + +
Sbjct: 81 TPRFLAASVGAHVGVPALAWLFGGWISAAAALLLVALLW-------------YFHLWLKA 127
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+R+ + P LD L+ + G S++ A + +G PL E + +++
Sbjct: 128 DRRR--MVHQLPTFLDALVRLITIGNSVNAAFQ---NALGSVEQPLLEVLQRADSQVRSG 182
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + Q+ + + + + R+G L + + R E A
Sbjct: 183 KDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTAL 242
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
S +L+ I+ LP+ + + I
Sbjct: 243 SAEVRLSA-WILALLPIGLALFI 264
>gi|27378606|ref|NP_770135.1| hypothetical protein blr3495 [Bradyrhizobium japonicum USDA 110]
gi|27351754|dbj|BAC48760.1| blr3495 [Bradyrhizobium japonicum USDA 110]
Length = 338
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/263 (15%), Positives = 79/263 (30%), Gaps = 11/263 (4%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
R + L + L S NI ++V
Sbjct: 53 DARERRIDRRLAVALPASHPANLLSIRRTETGSQTLFLHRLVNYSPEIPNIWHPAYVLVA 112
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
F ++ + + G ++ + R P
Sbjct: 113 GAFAGAATLYAISQLGYSILYGGIAAAIAAISVMRGLF------GWQQRRVALQLFRQLP 166
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DA+ L+ V SG+ + +A R +A ++ P + + + E++ A E Y
Sbjct: 167 DAIQLVTSTVRSGLPVHEAFRALAREM---PQPTAGQFAIVCNEVNLGRPPAEAVEGVYR 223
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--VPM 302
RTQ+ L + G S+ ++L+ L R + A KA + +
Sbjct: 224 RTQVAEYAMFAVTLAVQLKSGGSLAETLQNLGDTVRQRVALAARAKALAGEVIFSSRALT 283
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
I + +L P + ++ T
Sbjct: 284 ISPLIGGGVLYASNPQTVDLLFT 306
>gi|325663219|ref|ZP_08151669.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470673|gb|EGC73903.1| hypothetical protein HMPREF0490_02410 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 394
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ +G ++ + ++K++ + +P+ L+ ++ + +G++ A +++
Sbjct: 213 VILGLGLVGSILLILLEKETQKEEMKKKKKQMMIDYPEILNKFVLFLGAGMTAKAAWQKI 272
Query: 208 AEDIG-----GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+ D G+ EEM T+ E+ + + +E+F R + C L Q+
Sbjct: 273 SSDYEKGKIMGKERFAYEEMAYTLREMQAGGSEKECYEHFGKRCEAVCYMRFGALLSQNL 332
Query: 263 RYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ G+ + D LR+ ER A+K +G KL PM F L V+++++I PA LS
Sbjct: 333 KRGSKGLADLLRLEAVNAFEERKRAAKKAGEEVGTKLLAPM-FFMLTVVLVIVIVPAFLS 391
Query: 322 IID 324
+
Sbjct: 392 MQF 394
>gi|319937914|ref|ZP_08012314.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
gi|319806820|gb|EFW03459.1| hypothetical protein HMPREF9488_03150 [Coprobacillus sp. 29_1]
Length = 291
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 83/213 (38%), Gaps = 10/213 (4%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
F + + ++ ++ + + LI+ ++ ++ + L A++ P
Sbjct: 81 FDEKNTPEGIIRMQEIAVLSGLIVFLMMVWIVPPFITIIILLIFAAIV-------FYPIF 133
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ N++ + S ++ P ++ +++ ++ G+S++ A + + E +
Sbjct: 134 YYQNIISTKNSQFDKSLPMFINQVILSIKCGVSLENAFGFALRGMDKTL--VQREYAKMV 191
Query: 227 AELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
AEL + + F N R + ++ + G + D L+ +++
Sbjct: 192 AELKIYSDDIPKVFMNLNRRVHTEECERFCNIIVSGLKNGNKMSDILKSEYERISDNQIV 251
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+KKA S T I+ +IL++I P
Sbjct: 252 ALKKKADSKKNLGTAINILLIFVPVILLLIIPM 284
>gi|47568977|ref|ZP_00239668.1| conserved hypothetical protein protein [Bacillus cereus G9241]
gi|47554361|gb|EAL12721.1| conserved hypothetical protein protein [Bacillus cereus G9241]
Length = 276
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ P+IF + +I +D L
Sbjct: 54 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPVIFTSVFLICTVFHDYYLFK-------VG 104
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 105 VLISPLLYFYPDYLLKKRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 162
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 163 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 218
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ +++ P ++ I M+
Sbjct: 219 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVMYPMVIVIQSLMQ 271
>gi|325275752|ref|ZP_08141630.1| type II secretion system protein [Pseudomonas sp. TJI-51]
gi|324099112|gb|EGB97080.1| type II secretion system protein [Pseudomonas sp. TJI-51]
Length = 293
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/176 (15%), Positives = 65/176 (36%), Gaps = 7/176 (3%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A +++ + IS ++ + P LD + +++G +++ A+
Sbjct: 91 VAALMLLTGLPAIAYLLISWQSRRHMRHVVEQLPGLLDYSVRSLKAGRTLNDAVLGA--- 147
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
I PL + + + A Q D +R L + R+G + +
Sbjct: 148 IDSSREPLRTTLARVRRNVQLGVPLEDAMTELAELHQQDELRLFALGLRINQRHGGNASE 207
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL---VIIGPAILSII 323
+ L+ R + KA + ++T +I+ LP+ ++ ++ P L +
Sbjct: 208 LMENLIKLIREREQGARQLKAMTGETRITA-IILGALPLAMVGYFLLANPHYLLAM 262
>gi|229073961|ref|ZP_04207037.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185]
gi|228709146|gb|EEL61244.1| hypothetical protein bcere0025_60470 [Bacillus cereus F65185]
Length = 288
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 57/314 (18%), Positives = 118/314 (37%), Gaps = 33/314 (10%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
++ AV +F ++Y + L S K + + ++K + + +
Sbjct: 1 MSTILAVVVFVVMYWIFSTFLQS-------KKDSGSLLTNYVENAKRIEKKNLNQMMLAP 53
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ E I KL AG ++ L +++ PIIF + +I
Sbjct: 54 FQSLSHKYLT------EEKKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICT 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+D L +LI + + P + +++ + K P+ L +L ++
Sbjct: 106 VFHDYYLFK-------VGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLK 158
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ +++ + A+ G+ L + AEL F NF V T
Sbjct: 159 THTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFT 214
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--V 313
AL Q+ + T SLR++ ++ + R ++ E + K PM + V ++ +
Sbjct: 215 IALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCI 269
Query: 314 IIGPAILSIIDTMK 327
+I P ++ I M+
Sbjct: 270 VIYPMVIVIQSLMQ 283
>gi|209546005|ref|YP_002277895.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538862|gb|ACI58795.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 287
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 5/195 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+IL L+ + +++ V F P I +Q+R I+ P A+
Sbjct: 61 MILAYGITAIVVFLVVSLIFGPIFGIVIAIPVAFFLPKAVIRYFLQRRWLQIESQLPYAV 120
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V +G + A+ VA+ +P S E E A +
Sbjct: 121 DQIVSAVRTGKPLAVAVNAVADTGQ---MPASREFERIAREQKLGIGLVEALDRHGRTVP 177
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF-- 305
+ AL R G I + L + + ++ + +S ++ ++
Sbjct: 178 SLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKITTSSSQARMNFRVVNGGA 237
Query: 306 FLPVLILVIIGPAIL 320
+L++ P ++
Sbjct: 238 LFMILMIFFGQPELI 252
>gi|134295598|ref|YP_001119333.1| type II secretion system protein [Burkholderia vietnamiensis G4]
gi|134138755|gb|ABO54498.1| type II secretion system protein [Burkholderia vietnamiensis G4]
Length = 324
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 5/196 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ V A + G VW+++ +Q+R+ I R P LD
Sbjct: 101 AIGALAVLLAIAGLATHRAGVLAGLAALVCGGAMFGVWLASRIQRRRLKIVRQIPSFLDG 160
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ V G S+ A + + PL + L A + +
Sbjct: 161 IVRLVTLGNSVPAAFQAA---LLTCEEPLRGCLDHVSRMLRSGVEIDRAMLHVAKVYRTK 217
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L S +YG L + R E E A S +L+ +++
Sbjct: 218 EFELLGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSAETRLSAFVLVMLPIA 277
Query: 310 L--ILVIIGPAILSII 323
+ +V+ P L +
Sbjct: 278 IGSFVVMTNPRYLEGM 293
>gi|288919649|ref|ZP_06413977.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288348938|gb|EFC83187.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 286
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/266 (15%), Positives = 74/266 (27%), Gaps = 36/266 (13%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ N+ L AG R +L +
Sbjct: 20 GRPRAREQRAEPTWSRNLRETLVQAGIRGVSPQQ-------------FVLISAALGLVVG 66
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L+ F G P + + R ++ WPD +D L V +G+S+
Sbjct: 67 LVVLAFSGTFSLAGAFGVFASLLPRQLVLRRRRGRMHDLREVWPDVVDNLASAVRAGLSL 126
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+AL A V L + + + + ++L
Sbjct: 127 PEAL---AAVGVRGPVALRPAFTRFGEDYRATGSFSTCLDRLADELADPVADRIIESLRM 183
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAAS------LGPKLTVPMIIFFL------ 307
+ G +G LR L + R + AE + + P I+ L
Sbjct: 184 AREVGGTDLGRLLRTLSTFLREDARTRAELETRQTWTVNAARLAMAAPWIVLLLLASRGE 243
Query: 308 -------PVLILVIIGPAILSIIDTM 326
P + V+ G A +S++ +
Sbjct: 244 NVRAYDSPTGVAVLAGGAGVSVLAYL 269
>gi|33593027|ref|NP_880671.1| hypothetical protein BP1999 [Bordetella pertussis Tohama I]
gi|33563402|emb|CAE42279.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332382439|gb|AEE67286.1| hypothetical protein BPTD_1969 [Bordetella pertussis CS]
Length = 306
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 76/263 (28%), Gaps = 22/263 (8%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
R + +L R + + + + + L AG
Sbjct: 24 RQARDGARRQASEAFLERQLELRPGQPGASQASAARRRLPISNGAWRQLLLRAGV---EP 80
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + + L ++ + +
Sbjct: 81 TPRFLAASVGAHLGVPALAWLFGGWISAAAALLLVALLW-------------YFHLWLKA 127
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+R+ + P LD L+ + G S++ A + +G PL E + +++
Sbjct: 128 DRRR--MVHQLPTFLDALVRLITIGNSVNAAFQ---NALGSVEQPLLEVLQRADSQVRSG 182
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + Q+ + + + + R+G L + + R E A
Sbjct: 183 KDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELTAL 242
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
S +L+ I+ LP+ + + I
Sbjct: 243 SAEVRLSA-WILALLPIGLALFI 264
>gi|284029667|ref|YP_003379598.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283808960|gb|ADB30799.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 286
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/197 (17%), Positives = 68/197 (34%), Gaps = 17/197 (8%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ L AG + + L+ + +L + ++ G
Sbjct: 39 RDLLARAGVEG-VTPGAFIGACLITGFVAFVLMFLVSAALP------------VGVVFGL 85
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ P + + +KR + + WPD +D + V +G+S+ +AL A+ +PL
Sbjct: 86 MAGGVPVAVLKSRARKRLAEFRELWPDVVDNIASAVRAGLSLSEAL---AQVGERGPLPL 142
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGDSLRVLVS 277
E A+ + + + R +AL + G +G LR L S
Sbjct: 143 REPFRRFGADYASTGRFAESLDRLKARLADPVGDRVVEALRIAREVGGGDLGRLLRSLSS 202
Query: 278 ETRSERLMEAEKKAASL 294
R + +E ++
Sbjct: 203 FLRDDARTRSELESRQS 219
>gi|312794257|ref|YP_004027180.1| type II secretion system f domain [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181397|gb|ADQ41567.1| Type II secretion system F domain [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 264
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/195 (15%), Positives = 73/195 (37%), Gaps = 3/195 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F+ + + L ++ + +++ P +S +K + K+ D
Sbjct: 64 FISIVFTFFLISCLLFVLYARISILFGLILLPSVTTMPIAVLSIRTRKFKKQFKQDLLDT 123
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++ ++ + G+ ++Q L +AE P +E+ L L + + A ++T
Sbjct: 124 IETMIQGFKCGLVVEQVLEYIAESQENLVTPFIKEINL---RLLAGQSLKEASLQVSSKT 180
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + I ++L VL E E E A L + T+ M+ +
Sbjct: 181 LSSEFERMCRIFNLRSVTISHIAETLSVLAENIYEEEKTEIETLADKLNVRFTLIMLAGY 240
Query: 307 LPVLILVIIGPAILS 321
+ ++++ P ++
Sbjct: 241 VIPFLILVTYPLVMM 255
>gi|293604634|ref|ZP_06687036.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292816965|gb|EFF76044.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 272
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + +S L ++R ++ P AL +L + +G+++ LR V E G PL++E
Sbjct: 81 IPRLLVSQLRRRRAHRFEQQLPMALLMLAAAMRAGVALTTGLRHVVEQSG---APLAQEF 137
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L + E A EN R D A+ + + G ++ ++L + R+
Sbjct: 138 GLMLREQRLGVPWDAALENLQTRMPGDSTSLVVAAMRIASQTGGNLAEALESIAQTLRAR 197
Query: 283 RLMEAEKKAASLGPKLTVPMI 303
++A+ +A + +L ++
Sbjct: 198 LQLQAKLQALTSQGRLQAWIV 218
>gi|289582786|ref|YP_003481252.1| type II secretion system protein F [Natrialba magadii ATCC 43099]
gi|289532339|gb|ADD06690.1| Type II secretion system F domain protein [Natrialba magadii ATCC
43099]
Length = 684
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 89/267 (33%), Gaps = 6/267 (2%)
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + KD + + R + ++ ++ + I + L L+
Sbjct: 34 SEDSEFVKDVETKLTQARMTDTVEMYLSRS--LGIGFISGLALWLIGLTLGYLLFATGLI 91
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
V +++ ++ I ++ F + + +GF + + R+
Sbjct: 92 AVDVIIGFPVGNETLLAIIEALRIPALVFVTGLIFGTIGFALGFGSLVAIPYSRASARKR 151
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQ 236
I D++ + G++ + + +A+ +++E + E + + +
Sbjct: 152 EINMLLTDSVSFMYALSVGGLNQLEIIEAMAQA-DDTYGEVAKEFQSIVKETEYFDVDYR 210
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A N T D + ++ G + L + E E +L
Sbjct: 211 TAIRNQAIETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQEITLETLEL 270
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSII 323
+ M + P+L+++I+ ++ +I
Sbjct: 271 FGEMYMTLSLFPLLLIIIMV--VMQMI 295
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 78/202 (38%), Gaps = 9/202 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA---PSVWISNLV 172
+ V + ++ + + +L Y+ F P
Sbjct: 399 YTLAVTVPTALVVVTTAMMTGAAPLSWSALLNNVIWGTVLYVYIPFYIIAIPLSIFREWN 458
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ ++++ + + L L ++G+++ ++ + VA + L+ E L ++++
Sbjct: 459 VRHRNTVVKTLSEDLRKLSSANDTGLTLLESFQSVA---DTTNGKLAREFELMHTKVNYG 515
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A F N+ + + T+ + ++ I D LR S + + +E E+K+
Sbjct: 516 TSLKAALIEFNNKYHIPRLARTTRLITEAQEASNQITDVLRTAASASENHDDIERERKSR 575
Query: 293 SLGPKLTVPMIIFFLPVLILVI 314
++ V +II ++ VI
Sbjct: 576 ---TRMQVVIIIMTFLTVLAVI 594
>gi|44004389|ref|NP_982057.1| hypothetical protein BCE_A0050 [Bacillus cereus ATCC 10987]
gi|42741455|gb|AAS44900.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 276
Score = 67.1 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 54 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 104
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 105 VLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 162
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 163 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 218
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 219 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 271
>gi|289424130|ref|ZP_06425913.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289154827|gb|EFD03509.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|313792522|gb|EFS40608.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA1]
gi|313803523|gb|EFS44705.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA2]
gi|313814176|gb|EFS51890.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA1]
gi|313839670|gb|EFS77384.1| type II secretion system F domain protein [Propionibacterium acnes
HL086PA1]
gi|315078859|gb|EFT50877.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA2]
gi|327457368|gb|EGF04023.1| type II secretion system F domain protein [Propionibacterium acnes
HL092PA1]
Length = 300
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 100/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGSLLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVDLAAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRVVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALARAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + A +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLARIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|228912547|ref|ZP_04076212.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL
200]
gi|228847117|gb|EEM92106.1| hypothetical protein bthur0013_66060 [Bacillus thuringiensis IBL
200]
Length = 288
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 59/314 (18%), Positives = 118/314 (37%), Gaps = 33/314 (10%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A AV +F ++Y V L S K + + ++K + + +
Sbjct: 1 MATILAVVVFIVMYWVFSTFLQS-------KKDSGSLLTNYVENAKRIEKKNLNGMMLAP 53
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ E I KL AG ++ L +++ PIIF + +I
Sbjct: 54 FQSLSHKYLT------EEKKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICT 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+D L +LI + + P + +++ + K P+ L +L ++
Sbjct: 106 VFHDYYLFK-------VGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLK 158
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ +++ + A+ G+ L + AEL F NF V T
Sbjct: 159 THTTLEA--VKKAQIYAGRH--LHPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFT 214
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--V 313
AL Q+ + T SLR++ ++ + R ++ E + K PM + V ++ +
Sbjct: 215 IALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCI 269
Query: 314 IIGPAILSIIDTMK 327
+I P ++ I M+
Sbjct: 270 VIYPMVIVIQSLMQ 283
>gi|167620120|ref|ZP_02388751.1| pilus assembly protein, putative [Burkholderia thailandensis Bt4]
Length = 217
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 5/159 (3%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
L+ + + +PDALDL++ V +GI + QA+ P+
Sbjct: 29 YRMLIARFKQRFLSVFPDALDLIIRAVRAGIPVAQAIGTAGR---ESEEPVRATFRAMGD 85
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L + + E R Q+ L G ++ ++L L R+ R +
Sbjct: 86 ALRVGADMKDVLEQQAARLQLADFSFFGVCLTLQRETGGNLTETLENLSGIIRARRDIRM 145
Query: 288 EKKAASLGPKLTVPMI--IFFLPVLILVIIGPAILSIID 324
+ +A + ++ +I + F L ++ + ++
Sbjct: 146 KTRALTAEGRIASKIIAAVPFAIAAFLFVVNRPYIELLF 184
>gi|330953056|gb|EGH53316.1| type II secretion system protein [Pseudomonas syringae Cit 7]
Length = 294
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 68/194 (35%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
G+ +L I + +++S + R + + P LD
Sbjct: 71 AGLALTLYALLILIGYAMAGGVGAISVMLAVPLTLRLFVSWRYEVRVRRMIQQLPQLLDH 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ ++SG ++ A+ I PL + M + + A +F + D
Sbjct: 131 TVRSLKSGRTLADAVLHG---IDATDQPLKDGMSRIERNVQLGVSLPDAARDFAELYERD 187
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L + RYG + + + L+ R + +A + ++T +++ LP+
Sbjct: 188 EFHLFAIGLRVNHRYGGNASELMENLIKLIRDREQAGRQLRAMTGETRMTA-LVLALLPI 246
Query: 310 LIL---VIIGPAIL 320
+ + + P+ L
Sbjct: 247 TMAGYFLAVNPSYL 260
>gi|116694143|ref|YP_728354.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
gi|113528642|emb|CAJ94989.1| flp pilus assembly protein TadB [Ralstonia eutropha H16]
Length = 308
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/270 (11%), Positives = 84/270 (31%), Gaps = 19/270 (7%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+++ + L+ + + + + + L ++ + R++ +
Sbjct: 24 ASAQARARREQQQAFLQAQTEQVRLRYAQAPDPALQLPARDLRRRWDDFLRRADLAPTRR 83
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + P++ L + + A N V++
Sbjct: 84 TAIVWITPVVLCTLAGAVAGQWLGAVSALIVALAVAA------------FAAWNRVRRLH 131
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P LD ++ + G S+ A + I PL + ++ +
Sbjct: 132 KKLLSQLPGFLDGVVRLMTIGSSVPAAFQ---NSIANTEAPLRQCLVQAVHLQRAGKELD 188
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A +++ + L S RYG + + R + E A S
Sbjct: 189 QAVLQVGRVYKVEELVLVASVLRLSVRYGGRADVVMERTAAFMRDREQAQRELMALSAET 248
Query: 297 KLTVPMIIFFLPVLI---LVIIGPAILSII 323
+L+ I+ LP+++ L ++ + ++
Sbjct: 249 RLSA-WILGLLPLVVAGGLFMLNAGYILMM 277
>gi|237653360|ref|YP_002889674.1| type II secretion system protein [Thauera sp. MZ1T]
gi|237624607|gb|ACR01297.1| type II secretion system protein [Thauera sp. MZ1T]
Length = 289
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 72/176 (40%), Gaps = 3/176 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + + + V + P + L Q+R I++ PDAL
Sbjct: 63 LFVLNLLAVTVGGIGSWLASGEVLIALASAGALALLPRLAFGLLRQRRLDLIEQQLPDAL 122
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
++ + +G+S+ AL+++ + P+++E LT+ E A ++ R +
Sbjct: 123 QVIAGGLRAGVSMTVALQQLVREGR---PPIAQEFDLTLREHRLGIPLDEALDHLAARVR 179
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
M + A+ ++ G S+ ++L RS+ ME + A + KL ++
Sbjct: 180 MPSLTLVIAAMRIANETGGSLAEALERAALTVRSQLAMEGKIGALTAQGKLQAVVV 235
>gi|116671912|ref|YP_832845.1| type II secretion system protein [Arthrobacter sp. FB24]
gi|116612021|gb|ABK04745.1| type II secretion system protein [Arthrobacter sp. FB24]
Length = 204
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
R R L+L+ +++G I +AL VA S + ++ L+
Sbjct: 53 RQALRAGEGLRDTAMMLELIGAMLDAGSGIGRALELVA---DSASPEYRHSLRPVVSALA 109
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + A+ + RT + QAL + G L + R ER AEK+
Sbjct: 110 IGADWETAWRSSEVRT--PELLVLRQALGFAALTGAPSSAILYAQAARLRRERFRAAEKR 167
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
AA+LG +L VP+ + LP + + + P +L+++ +
Sbjct: 168 AAALGVRLVVPLGLCSLPAFVCLGVVPVLLAMLPS 202
>gi|308176985|ref|YP_003916391.1| type II secretion system protein F [Arthrobacter arilaitensis
Re117]
gi|307744448|emb|CBT75420.1| putative type II secretion system protein F [Arthrobacter
arilaitensis Re117]
Length = 283
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 18/228 (7%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
K+ I N L AG + + +V+ +V I F ++ + +
Sbjct: 27 KSRNRSSAIKNALLHAGM-GNLAPSKFIVICVVCGITFTLITLALTASW----------- 74
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++ G AP V++ + KRQ++++ WP+ +D L + +G+S+ +AL ++A
Sbjct: 75 -LFALVFCIFGSFAPWVYLRHQAAKRQAALQEQWPEVVDHLRSAIRAGLSLPEALSQLAM 133
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SI 268
PL + L + N VA + R L + G +
Sbjct: 134 VGPQILRPLFRDFAL---DYRATANFAVALDQLGERLADPVADKILTTLRITREVGGTDL 190
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G +L L + R + E A ++ + P ++L+++G
Sbjct: 191 GHTLTTLSAFLRDDVRTRGELAARQSWI-VSAARLAVAAPWILLLVLG 237
>gi|20094142|ref|NP_613989.1| hypothetical protein MK0705 [Methanopyrus kandleri AV19]
gi|19887149|gb|AAM01919.1| Predicted membrane protein [Methanopyrus kandleri AV19]
Length = 325
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 77/194 (39%), Gaps = 5/194 (2%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + P ++G+ + V + + R I+ PDAL +
Sbjct: 58 ASLIYVLIGMSISGPLIPKLGSTAFLLAVMPLYLLIHPRIVQSLRIKDIEENLPDALRQM 117
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + +G+SI + +R VAE LS E + + ++ + A + R +
Sbjct: 118 VEELRAGLSIFETIRNVAE---SDYGELSREFRIVVRDMDTGKTFEEAILDMAERVNSEL 174
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF--LP 308
+ A + ++ G ++ D L + ++ R R +E E+KA + P L + + LP
Sbjct: 175 LTRAVRLTVRISMSGGALADVLEAVENDIREVRRIELERKAITTMPCLALALGGLISGLP 234
Query: 309 VLILVIIGPAILSI 322
V + + + +
Sbjct: 235 VGVSIGAVIGVAMM 248
>gi|327454295|gb|EGF00950.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA3]
gi|328756054|gb|EGF69670.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA1]
Length = 300
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 99/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGSLLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVGPVAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRMVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALARAL 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEVVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLTRIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKAEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|313764977|gb|EFS36341.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA1]
gi|313815463|gb|EFS53177.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA1]
gi|313829027|gb|EFS66741.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA2]
gi|314916258|gb|EFS80089.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA4]
gi|314921862|gb|EFS85693.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA3]
gi|314930874|gb|EFS94705.1| type II secretion system F domain protein [Propionibacterium acnes
HL067PA1]
gi|314955331|gb|EFS99736.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA1]
gi|314959203|gb|EFT03305.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA1]
gi|314969036|gb|EFT13134.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA1]
gi|315099723|gb|EFT71699.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA2]
gi|315102364|gb|EFT74340.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA1]
gi|315109819|gb|EFT81795.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA2]
gi|327334604|gb|EGE76315.1| membrane associated protein [Propionibacterium acnes HL097PA1]
gi|327456360|gb|EGF03015.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA2]
gi|328758899|gb|EGF72515.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA2]
Length = 300
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 99/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q R
Sbjct: 7 ILAAICGSLLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVGPVAEGGRLERWGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRMVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALARAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEVVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLTRIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKAEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|20091915|ref|NP_617990.1| hypothetical protein MA3097 [Methanosarcina acetivorans C2A]
gi|19917113|gb|AAM06470.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 383
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 6/208 (2%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ ++ L A E + + + + ++ + + + + F
Sbjct: 115 DRKPNTDLAKSLYQADI--EITPGMFISLAIITSLFVAVFMFVISTVLFYGMPNAFVYVF 172
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
L + + N V + +I+ P AL + + G S +RRVA
Sbjct: 173 SLTFLTLGLSLGGFPFALYNKVSNKNMNIQHEIPFALSYMSVLASGGSSPLDVIRRVA-- 230
Query: 211 IGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+S E+ + + + A T + +R + + + G +
Sbjct: 231 -AEDYGEISRELSKVMYRIDALGEDGNTAMSYLIQNTSSEHLRAVCIDISNAMQAGGGLQ 289
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPK 297
L + E R + SL
Sbjct: 290 AYLELKSKELMEMRRQAQKAFVDSLSIY 317
>gi|167836790|ref|ZP_02463673.1| hypothetical protein Bpse38_09905 [Burkholderia thailandensis
MSMB43]
Length = 221
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 7/194 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L + + A + G W+ + +QKR+ I R P LD ++
Sbjct: 1 LVAATAVATLWAGLRGGLLAAVAAFVAGATLVVFWLVSRMQKRRLRIVRQLPSFLDGIVR 60
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V G S+ A + + PL + L A ++
Sbjct: 61 LVTLGNSVPAAFQAT---LQTTEAPLRGCLDHVSRMLRSGVEIDRAMVYVATLYRIKEFE 117
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL-- 310
L S +YG L + R E E A S +L+ ++ LPV
Sbjct: 118 LVGSVLRLSVKYGGRADVMLDRMAVFMRDLEQAERELVAMSAETRLSA-WVLGALPVGIG 176
Query: 311 -ILVIIGPAILSII 323
++ P S +
Sbjct: 177 SFVIATNPKYFSAM 190
>gi|226325182|ref|ZP_03800700.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
gi|225206530|gb|EEG88884.1| hypothetical protein COPCOM_02974 [Coprococcus comes ATCC 27758]
Length = 301
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 82/219 (37%), Gaps = 25/219 (11%)
Query: 101 KLRAAGFR---SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+L AG + L ++L+ I F+ LG+I I
Sbjct: 63 RLAEAGIEVNGKTWILLLVLLAGAGALIGFMALGLI-------------------GIGFA 103
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+G +W+ + + R++ +L ++ + +G SI++ALR V E+ P
Sbjct: 104 LIGPLIAELWVRSRGKSRKARFDEQLARSLPMVAENMRAGSSIERALRSVGENSDD---P 160
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
L E+L + + A ++ RT + A+ G S+ DSL +
Sbjct: 161 LKSELLACAGAMQIDGDIVAALDDMAKRTGSKDLVLLQAAVASHKEVGGSLADSLERIGD 220
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + ++ + ++ +I L +L +I+
Sbjct: 221 TIDARLSLRRHIESETSSVIASMKALIVMLLILFAIIMV 259
>gi|296118089|ref|ZP_06836671.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968975|gb|EFG82218.1| membrane protein [Corynebacterium ammoniagenes DSM 20306]
Length = 208
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L + CV +G+SI QA V+ P + L+ + A+ +
Sbjct: 74 IELFVACVRAGLSIQQATSAVSVV---AEEPTVTYWKQVNSLLALGVEPERAWVHMQ--- 127
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ++ + ++ S+ G +I + LV R++ A KA G +++P+ + F
Sbjct: 128 PVPGLQELARLVMMSEHSGAAIASGCQRLVDTLRADATSSAIAKAERAGVFISLPLALCF 187
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 188 LPAFIILGLVPVVISL 203
>gi|323525749|ref|YP_004227902.1| Type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1001]
gi|323382751|gb|ADX54842.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1001]
Length = 386
Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 7/178 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
V A + S +R+ +I R P LD ++ + G S+ A +
Sbjct: 181 GVLAAGVTLCGCAVFLYFVTSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQAS- 239
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL E + L A + + L S +YG
Sbjct: 240 --LQITEAPLRECLDHVSRMLRSGVEIDRALSHVAVLYGARELELVGAVLRLSVKYGGRA 297
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
L + S R E E A S +L+ ++ LP L++ P +
Sbjct: 298 DVMLDRMSSFMRDLEHAERELVAMSSETRLSS-WVLGMLPAGIGGFLILTNPRYFGAM 354
>gi|119715779|ref|YP_922744.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536440|gb|ABL81057.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 300
Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 105/303 (34%), Gaps = 11/303 (3%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
++ + A++ + + + R +Q + + T S +
Sbjct: 5 VLAAGLVAVALLHAYRLAVPPRADLAGAVRRWDSARARQ---TRIQRIGAPRATTVSGRI 61
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
++++ L+ + + L G S+ + + ++ ++ + ++
Sbjct: 62 QSWLSDQVLRRTKDVKGLTQDLAVTG----GSVEQYVGKTTTLALLGFFGPLVILGSFNA 117
Query: 141 LL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ P A L+ + + +KR++ +R LDL+ + +++G
Sbjct: 118 IGLGIPLVFGPAAGALLAAAMLVVTRQELMDKAKKRRAEFRRTLSVYLDLVAMSMQAGRG 177
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+AL A IG + + A S A +R + + + AL
Sbjct: 178 HSEALPASA-AIGTGWAFTHLQDAIDGARFS-GTTPWHALGQLGDRFGIRELTDLDSALT 235
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
++ G + +L R+ER+ +AE AA + +I+ + + P++
Sbjct: 236 LANEDGAKVRATLVARAETLRAERIADAEAAAAQATESMRFALIVMVF-AFLTYELYPSV 294
Query: 320 LSI 322
+
Sbjct: 295 ARL 297
>gi|331003047|ref|ZP_08326559.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413091|gb|EGG92466.1| hypothetical protein HMPREF0491_01421 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 409
Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 71/184 (38%), Gaps = 15/184 (8%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
F L ++I + + ++K + + + +PD + L++ + +G+S+ Q+
Sbjct: 226 FNLIWIIGVIIALLLYLREKEREKFNLEKIKRELMKDYPDIVSKLIVFIGAGLSVRQSWE 285
Query: 206 RVAEDIGGQSVP------LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ +D + EEM L + + +++F + L
Sbjct: 286 SIVKDYENEYRENNEKRYAYEEMAKAYERLKNGTHENIVYKDFGRSCSLRQYMKLASLLE 345
Query: 260 QSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT--------VPMIIFFLPVL 310
Q+ R G +++ L + ERL A ++ L KL + M++ +P L
Sbjct: 346 QNRRSGISNLHTLLSMESQSAWDERLNLARREGEELNTKLLLPLFIMLLIVMMMIIVPAL 405
Query: 311 ILVI 314
++
Sbjct: 406 LIFY 409
>gi|269955643|ref|YP_003325432.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304324|gb|ACZ29874.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 301
Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/318 (15%), Positives = 107/318 (33%), Gaps = 26/318 (8%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGS-----GELEKRMKSVAVEREILRKQQITSLQ 64
+ L A+ + + A+V+ + + R+ +T
Sbjct: 1 MSAGLLTAMLAGALLCGGLAALVMRLFPAQHVALDDAFARITPTTATASAAPSADVTRKD 60
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ A + + +R V++L L I V +KL AG
Sbjct: 61 RFGAWALRTMPPALWVRTPVRELALLQIPVTRFYADKLIVAG------------------ 102
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + + L P + A + + + F P+ ++ ++ + +RA
Sbjct: 103 LGLIAVPAATALYAAMGLRLPVTIPAVASLALAALLFFTPNAAVARDAKQARGQFRRALA 162
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LDL+ + SG + A+ A+ + A E +
Sbjct: 163 LYLDLVAVERRSGAGVRPAMEAAADVADSW--VFRRLGEVLRRTQWSGQPPWDALEQMAD 220
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ +++ + S G + D LR + RS L E A ++G ++ +P +
Sbjct: 221 ELGLPELKDFADIVGLSATQGAAAYDHLRARSAALRSAILSEDLTAANNIGERMAIPSSL 280
Query: 305 FFLPVLILVIIGPAILSI 322
+ + + ++I PA+L +
Sbjct: 281 LGV-IFMALLIAPAVLRM 297
>gi|145596548|ref|YP_001160845.1| type II secretion system protein [Salinispora tropica CNB-440]
gi|145305885|gb|ABP56467.1| type II secretion system protein [Salinispora tropica CNB-440]
Length = 253
Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G +D+++ VAE + G PL+E + L A+ +
Sbjct: 126 MRAGAPVDRSVLAVAEALDG---PLAERLARVGRLLRLGAEPAEAWSTLA---AVPGAER 179
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A ++S G S+ +L L + R++R AE A G + +P+ + FLP IL
Sbjct: 180 LVGAALRSATSGASLAGALTRLADDLRADRTTAAEATAQRSGVLIVLPLGLCFLPAFILA 239
Query: 314 IIGPAILSII 323
+ P I++++
Sbjct: 240 GLVPVIVAVL 249
>gi|317491687|ref|ZP_07950122.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920121|gb|EFV41445.1| type II secretion system protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 290
Score = 66.8 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 67/193 (34%), Gaps = 5/193 (2%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ + ++ +I + L Q V + I + + I + +R +
Sbjct: 60 LKGMKGAMVALILLLVLLFLNANWLQFDVMFFLPITLMVMFIAQLRIGRSLHRR--YFED 117
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+P+ L ++ V +G SI QAL R E I G L L+ + + F +
Sbjct: 118 RFPEILSVVNAAVSAGNSIHQALHRCGEGIDG---DLGVTFHRIDRRLNLGEDPERVFND 174
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + ++ S ++G + + L + + M K A + + +
Sbjct: 175 AWENYRYREFYFFVVVMLVSLQHGGQLRTLMGRLSRIVNNSKNMARRKSAMTSEARTSAK 234
Query: 302 MIIFFLPVLILVI 314
++ + +
Sbjct: 235 IVASLPLLFFCGM 247
>gi|160897512|ref|YP_001563094.1| type II secretion system protein [Delftia acidovorans SPH-1]
gi|160363096|gb|ABX34709.1| type II secretion system protein [Delftia acidovorans SPH-1]
Length = 320
Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 4/186 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + I G L Q A +++ + + I KR+ + + P LD
Sbjct: 97 LALFAITGLVLALLATSQAGAAAGLVVAVLYAVVLAFGIWRRQAKRRERLLQQLPGFLDN 156
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G S A + ++ PL + + A LS P+ A ++
Sbjct: 157 MVRLISIGNSPHAAFQMALNNVPD---PLGDALQQAAAMLSASPDLGQAMGQLERNWRLP 213
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
S RYG L + + R + E E A S +++ ++ LP+
Sbjct: 214 EFGLLAAVFRMSVRYGGRADLVLERVSAYIRDRQSAERELHALSSEIRMSA-WVLALLPL 272
Query: 310 LILVII 315
++ +I
Sbjct: 273 VVGALI 278
>gi|217423568|ref|ZP_03455069.1| type II secretion system protein [Burkholderia pseudomallei 576]
gi|217393426|gb|EEC33447.1| type II secretion system protein [Burkholderia pseudomallei 576]
Length = 237
Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 47 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 103
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 104 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 163
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 164 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 206
>gi|307730003|ref|YP_003907227.1| type II secretion system F domain-containing protein [Burkholderia
sp. CCGE1003]
gi|307584538|gb|ADN57936.1| Type II secretion system F domain protein [Burkholderia sp.
CCGE1003]
Length = 404
Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 7/178 (3%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
A + +S +R+ +I R P LD ++ + G S+ A +
Sbjct: 199 GPLAAAVTLAGCAVFLYFIMSMRASRRRQAIVRQLPSFLDGIVRLITLGNSVPAAFQAS- 257
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ PL E + L A + + L S +YG
Sbjct: 258 --LRTTEAPLRECLDHVSRMLRSGVEIDRALSHVAVLYGARELELLGAVLRLSVKYGGRA 315
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV---LILVIIGPAILSII 323
L + S R E E A S +L+ ++ LP+ L++ P +
Sbjct: 316 DVMLDRMSSFMRDLEQAERELVAMSSETRLSS-WVLGMLPIGIGGFLILTNPRYFGSM 372
>gi|158317569|ref|YP_001510077.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158112974|gb|ABW15171.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 286
Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/253 (14%), Positives = 82/253 (32%), Gaps = 36/253 (14%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
N+ L AG R + + +++ + ++ ++ +++ + + +
Sbjct: 30 EASWARNLRETLAQAGIRG-VTAHQFVLISAALGLVAGLVILVFSGTFSLAVAFAAF--- 85
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
P + + R ++ WPD +D L V +G+S+ + L A
Sbjct: 86 ---------ASVLPRQLVLRRRRARIHDLRELWPDVVDNLASAVRAGMSLPEGL---AAV 133
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIG 269
PL + + + + ++L + G +G
Sbjct: 134 GVRGPAPLRPAFTRFGEDYRATGSFSTCLDRLADDLADPVADRIIESLRMAREVGGTDLG 193
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGP------KLTVPMIIFFL-------------PVL 310
LR L + R + AE + + P I+ L P
Sbjct: 194 RLLRTLSAFLREDARTRAELETRQAWTVNAARLAMAAPWIVLLLLASRGENIQAYDSPTG 253
Query: 311 ILVIIGPAILSII 323
+LV++G A +S++
Sbjct: 254 VLVLLGGAGVSVL 266
>gi|302669441|ref|YP_003829401.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
gi|302393914|gb|ADL32819.1| Flp pilus assembly protein TadB [Butyrivibrio proteoclasticus B316]
Length = 254
Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 7/201 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ ++ + F AV +I + + N K+ I + DA+
Sbjct: 23 IIYLLQGLLIAIMFGRLFFDSWIAVGIISPIAIPWTLMQRKNQKNKKCRLIGIQFKDAIF 82
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L +++G SI+ A D+ +S + L +
Sbjct: 83 SVLTSLKAGFSIENAFMEARRDMDLLYGKNSDISFYLSRISKGLRNNVPLEKLIFGMGKE 142
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T +++ + R G ++ + + +S + +E E + + K I+
Sbjct: 143 TTNTDIQDFALVFSVAKRNGGNMTEIIDRTISVISGKLEVEKEIEVL-ISAKRLEARIMN 201
Query: 306 FLPVLILVII---GPAILSII 323
+P I+ I P +
Sbjct: 202 MVPFFIIFYISITSPGFFDAL 222
>gi|190015732|ref|YP_001967248.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus]
gi|208702198|ref|YP_002267399.1| hypothetical protein BCH308197_A0144 [Bacillus cereus H3081.97]
gi|217956758|ref|YP_002335852.1| hypothetical protein BCAH187_C0116 [Bacillus cereus AH187]
gi|116584639|gb|ABK00756.1| hypothetical protein BcAH187_pCER270_0105 [Bacillus cereus]
gi|208658053|gb|ACI30423.1| conserved hypothetical protein [Bacillus cereus H3081.97]
gi|217068513|gb|ACJ82761.1| conserved hypothetical protein [Bacillus cereus AH187]
Length = 288
Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 118/314 (37%), Gaps = 33/314 (10%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+A A+ +F ++Y V L S K + + ++K + + +
Sbjct: 1 MATILALVVFVVMYWVFSTFLQS-------KKDSGSLLTNYVENAKRIEKKNLNQMMLAP 53
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++ E I KL AG ++ L +++ PIIF + +I
Sbjct: 54 FQSLSHKYLT------EEKKELIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICT 105
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+D L +LI + + P + +++ + K P+ L +L ++
Sbjct: 106 VFHDYYLFK-------VGVLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLK 158
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ +++ + A+ G+ L + AEL F NF V T
Sbjct: 159 THTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFT 214
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--V 313
AL Q+ + T SLR++ ++ + R ++ E + K PM + V ++ +
Sbjct: 215 IALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCI 269
Query: 314 IIGPAILSIIDTMK 327
+I P ++ I M+
Sbjct: 270 VIYPMVIVIQSLMQ 283
>gi|228943036|ref|ZP_04105537.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228955918|ref|ZP_04117855.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228976631|ref|ZP_04137074.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228783100|gb|EEM31236.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228803745|gb|EEM50427.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228816621|gb|EEM62745.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 304
Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 70/201 (34%), Gaps = 5/201 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +I + Y F + + I +G P + +K + ++ L+
Sbjct: 71 IILIIGTLVGAVALYGFFMSLSTTIFGVLLGVSLPPIIGFYKRKKYEEYVENQLMVYLEA 130
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ V + S+ A + V + E L+ + + AF +F +
Sbjct: 131 VANAVSTHESMTLAFKSVLPLLQSPIKDDVERCLIL--YTEDGKSIRDAFHSFVQKYNYK 188
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV---PMIIFF 306
++ L + G D L + E + +++ A+ K+ + T +++
Sbjct: 189 DIKLFHDMLDLISKTGKDTDDILLNIAHEFQDKKIYRAKLKSGMQPQRKTFKQTAIMLAS 248
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LPV L I + T++
Sbjct: 249 LPVAALAINADDYVVFARTLQ 269
>gi|49085940|gb|AAT51316.1| PA4301 [synthetic construct]
Length = 295
Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 21/232 (9%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ ++R AG + +L ++ ++ L L
Sbjct: 48 RPRSSHWLARQMRRAGIQRPRP----------WLFGAAVLALLLVWSGLGLFGTIGALGG 97
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + V + L Q+R + R P LD ++ + +G ++ AL + E+
Sbjct: 98 LLLAALSC------RVALGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEN 151
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
PL + L + + A + +++ +R + + RYG + D
Sbjct: 152 ---AEEPLRDIFTLARNHVLLGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSD 208
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAIL 320
L +V + + A + +++ ++ L ++ P L
Sbjct: 209 LLDSIVKLIHEREKLSRQLHAMTGETRISAYVLAGVPSALGGYILASNPGYL 260
>gi|167816006|ref|ZP_02447686.1| type II secretion system protein [Burkholderia pseudomallei 91]
Length = 206
Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 16 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 72
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 73 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 132
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 133 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 175
>gi|314917528|gb|EFS81359.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA1]
Length = 300
Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 46/304 (15%), Positives = 98/304 (32%), Gaps = 15/304 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I A+ L A V G R+ +Q
Sbjct: 7 ILAAICGSLLACAPVFVVSGRRNAPLRLSDALAGLSDYGRQDAVVGPVAEGGRWEGGGTR 66
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++R +V E L G + L++ + V+ + +++ +
Sbjct: 67 AAIRW--------PRMVSERSRRTLILQG----RTPGDLVIEKAVMAMGGMLVPALARAV 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ VG +++ VG+ P I + + + +DL+ + +
Sbjct: 115 AAACGDTLPVTPVGLAVVLAVVGWFIPDTRIRSRSKAVRQDAAEVVLVYVDLVTLARLAN 174
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
S +AL A+ L+ + + + + + + +
Sbjct: 175 QSAPRALVEAAQM--SDHPVLTRIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEV 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L D G S+ +LR V E R L + + +A + LT+ M+I L + +++I P
Sbjct: 233 LRL-DDQGASLAGALRARVHEMRDAHLNQEKAEAQTASESLTIWMVIPVLVLGLVLITPP 291
Query: 318 AILS 321
++
Sbjct: 292 LLIM 295
>gi|163814843|ref|ZP_02206231.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
gi|158449782|gb|EDP26777.1| hypothetical protein COPEUT_00993 [Coprococcus eutactus ATCC 27759]
Length = 246
Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 74/201 (36%), Gaps = 7/201 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I I + F ++ + + + Q + + + L
Sbjct: 15 IGIAITYMVVTAAIAVLFYDNAAVCVVGVPGLLAMFRMVSRSKCIRMQKKLNMEFKEMLL 74
Query: 189 LLLICVESGISIDQALRRVAEDIGGQS---VPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S+++A V +++ G + E+ + IA L + ++ +NF R
Sbjct: 75 SLAANMAAGYSMEKAFVPVYQEMEGLYQGRSYIQGEIKMIIAGLEMNTDMKILLKNFAER 134
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +D V + + R G ++ ++ +V +E E + K I+
Sbjct: 135 SGLDDVMEFAKVSAVAGRSGGNLIKMMKKMVQTIEERLEVEDEIDTM-VTAKRMEYNIMS 193
Query: 306 FLPVLILVII---GPAILSII 323
+P +I++ + P ++ +
Sbjct: 194 AMPFVIVLYMRVCNPGYMNAL 214
>gi|289706182|ref|ZP_06502546.1| type II secretion system F domain protein [Micrococcus luteus SK58]
gi|289557094|gb|EFD50421.1| type II secretion system F domain protein [Micrococcus luteus SK58]
Length = 375
Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 9/176 (5%)
Query: 151 GAVILIGYVGFCAPSVWISNL-VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V +G + + A W L + LD+L + +G ++ AL +
Sbjct: 205 AVVAAVGLLFWLAGRSWTRVLLRAAAREPAAVGAAVVLDVLAALLSAGRALPAALDDLGR 264
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ G + T A L + + A+ L R G +
Sbjct: 265 TLPGAPG-----LRATAALLLWGRDWDEAWAGLDT---DPVWIETAARLRPLHRSGMAGA 316
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+L + R + E+ A L +L +P+ + LP + + P +++++
Sbjct: 317 RTLAETAAAVRQQTRRADERAAEELAVRLVMPLGLCLLPAFVCWGVVPVVMALLGA 372
>gi|296132332|ref|YP_003639579.1| hypothetical protein TherJR_0811 [Thermincola sp. JR]
gi|296030910|gb|ADG81678.1| hypothetical protein TherJR_0811 [Thermincola potens JR]
Length = 303
Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 96/299 (32%), Gaps = 19/299 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + ++ F L + K ++++ +I + +KD
Sbjct: 1 MKRIAIIWSYILPIAAFLLTIWLGSLLFAKDR--KVVRAILKAGDITLSEYELQRRKDGK 58
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L + + L ++ N L+ G + LL +V ++
Sbjct: 59 LVSLVADFLPKIEKALDLQKLFGY----DLRNMLKMMG--EKKKPERLLADHIVTAVLAG 112
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ ++ L + +I++G + + Q+ + + P+ +D
Sbjct: 113 SVMLVLPLVTGFELYFLLYPVAIILIMVGQAQM------VKKRFKAWQNEVVKDIPELID 166
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ I + SG AL++V E+ G LS+ + I ++ + A + F +
Sbjct: 167 KMRISLASGKDYLSALKKVQENSG---PRLSKIVERLINDMQIMRP-TQALDEFAQAFGL 222
Query: 249 DCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ AL G + + + R R + E+ + K+ I
Sbjct: 223 PVMVKFVAALKVGMEVGYEQAESYFANIEDDIRDLRKLSLEELTKNKPEKVVFLKGIMI 281
>gi|119715489|ref|YP_922454.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119536150|gb|ABL80767.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 284
Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 4/188 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + + V + ++ + ++ + G +G AP
Sbjct: 33 RGRAAGLLARAGLGQVSVTGFVVLCVGCGVVTTVVLQAVSGTPPVALAFGLMGAWAPVGI 92
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S ++RQ + WP+A+D L V +G+S+ AL A PL +
Sbjct: 93 VSGRARRRQRELAEVWPEAVDNLTSAVRAGMSLPDAL---AGLGSRGPEPLRDAFDQFAL 149
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGDSLRVLVSETRSERLME 286
+ + R + L + G +G LR L S R +
Sbjct: 150 DYQVTGRFGECLDRLKERLADPVGDRVVEGLRIAREVGGGELGRLLRNLSSYLRDDARTR 209
Query: 287 AEKKAASL 294
+E +A
Sbjct: 210 SELEARQA 217
>gi|159040452|ref|YP_001539705.1| type II secretion system protein [Salinispora arenicola CNS-205]
gi|157919287|gb|ABW00715.1| type II secretion system protein [Salinispora arenicola CNS-205]
Length = 288
Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 7/267 (2%)
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR----AAGFRSEYSLNI 115
L A R + + + + LR
Sbjct: 25 RELLPATPALGPALRRLHQPSGSHPAASAGHRLEWLTGLARWLRPPHQQLALLGRTPEQY 84
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L + L I ++ I + P + V + + + + +
Sbjct: 85 ALSLLLSALIGLASPTLLSITFAATGVGMPVAVPVLGSLGLALLCAWLAHRAVLTKAEAA 144
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ + A LDL+ + + + Q+L R AE G E L + +
Sbjct: 145 RAEFRAAVCTYLDLVALQLSAAHGPVQSLERAAEVCDGWVFDRIRESLRLAQLQ--MHSP 202
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ +R + + + + S G + ++LR R + + +A +
Sbjct: 203 WDELRDLADRIGIPELGDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVT 262
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSI 322
+L +P + VL+ P + +
Sbjct: 263 GRLDIPGALLVF-VLLGFGTYPFVARL 288
>gi|167738782|ref|ZP_02411556.1| type II secretion system protein [Burkholderia pseudomallei 14]
gi|167824381|ref|ZP_02455852.1| type II secretion system protein [Burkholderia pseudomallei 9]
gi|167911132|ref|ZP_02498223.1| type II secretion system protein [Burkholderia pseudomallei 112]
Length = 211
Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 21 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 77
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 78 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 137
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 138 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 180
>gi|114321308|ref|YP_742991.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114227702|gb|ABI57501.1| type II secretion system protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 294
Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/160 (15%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ Q+R +++ P ++ ++ +++G ++ A+ ++ P++E M
Sbjct: 108 VVYWRGQRRLRAMEAQLPGFVEHIIRSLQAGRTLSVAVAAATREMR---PPVAEVMQRVQ 164
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
E+ + A + + ++D ++ + + RYG S + +V+ R
Sbjct: 165 REVDMGASLSDALQGAADIYRVDALQLVAIGVRINLRYGGSAIQLMEQVVTLLRQRERAR 224
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLI---LVIIGPAILSII 323
E KA + +++ ++ LPV + V++ P + +
Sbjct: 225 RELKAMTGETRISAG-VLAILPVGVGGYTVMMNPDYYATM 263
>gi|15599497|ref|NP_252991.1| TadB [Pseudomonas aeruginosa PAO1]
gi|107100115|ref|ZP_01364033.1| hypothetical protein PaerPA_01001136 [Pseudomonas aeruginosa PACS2]
gi|218893393|ref|YP_002442262.1| TadB [Pseudomonas aeruginosa LESB58]
gi|254244888|ref|ZP_04938210.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
gi|9950523|gb|AAG07689.1|AE004846_6 TadB [Pseudomonas aeruginosa PAO1]
gi|126198266|gb|EAZ62329.1| hypothetical protein PA2G_05761 [Pseudomonas aeruginosa 2192]
gi|218773621|emb|CAW29435.1| TadB [Pseudomonas aeruginosa LESB58]
Length = 294
Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 77/232 (33%), Gaps = 21/232 (9%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ ++R AG + +L ++ ++ L L
Sbjct: 48 RPRSSHWLARQMRRAGIQRPRP----------WLFGAAVLALLLVWSGLGLFGTIGALGG 97
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + V + L Q+R + R P LD ++ + +G ++ AL + E+
Sbjct: 98 LLLAALSC------RVALGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEN 151
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
PL + L + + A + +++ +R + + RYG + D
Sbjct: 152 ---AEEPLRDIFTLARNHVLLGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSD 208
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAIL 320
L +V + + A + +++ ++ L ++ P L
Sbjct: 209 LLDSIVKLIHEREKLSRQLHAMTGETRISAYVLAGVPSALGGYILASNPGYL 260
>gi|289641001|ref|ZP_06473170.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
gi|289509121|gb|EFD30051.1| type II secretion system protein [Frankia symbiont of Datisca
glomerata]
Length = 286
Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 18/237 (7%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ + L AG S + L++ V
Sbjct: 20 GRPRVRRDPGTAKWRVRSKELLAQAGIPG-VSPDQFLMISTGV------------GLVVG 66
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
LL F P + + R ++ WPD +D L V +G+S+
Sbjct: 67 LLVLAFTATWSLAGAFFVFAALLPRALVVRRRRTRMHDLRELWPDVVDNLASAVRAGMSL 126
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ L A VPL + + + + + ++L
Sbjct: 127 PEGL---ASVGVRGPVPLRPAFTRFGEDYRATGSFSASLDRLADDLADPIADRIIESLRM 183
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G +G LR L + R + AE + + + P ++L+++
Sbjct: 184 AREVGGTDLGRLLRTLSTFLREDARTRAELETRQSWTVNAARLALGA-PWVVLLMLA 239
>gi|190015135|ref|YP_001966620.1| conserved hypothetical protein [Bacillus cereus]
gi|190015401|ref|YP_001966946.1| hypothetical protein pPER272_0075 [Bacillus cereus]
gi|116584811|gb|ABK00926.1| conserved hypothetical protein [Bacillus cereus]
gi|116585082|gb|ABK01191.1| conserved hypothetical protein [Bacillus cereus]
Length = 276
Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 54 KKELIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 104
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 105 VLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 162
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 163 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 218
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 219 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 271
>gi|111220777|ref|YP_711571.1| hypothetical protein FRAAL1320 [Frankia alni ACN14a]
gi|111148309|emb|CAJ59981.1| conserved hypothetical protein; putative membrane protein [Frankia
alni ACN14a]
Length = 357
Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/234 (14%), Positives = 63/234 (26%), Gaps = 23/234 (9%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ + L AG R S + + + +
Sbjct: 20 GRPRASRGPTTMRWEHTTAELLAQAGIRG-LSPRQFVAISVA------------LGLLVG 66
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
L+ F + P + R ++ WPD +D L V +G+S+
Sbjct: 67 LVVLAFTGTLSLAGAFAVFASLLPRALVVRRRHGRIHDLRELWPDVVDNLASAVRAGMSL 126
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ L A V L + S + + + ++L
Sbjct: 127 PEGL---AAVGVRGPVQLRPAFTRFGEDYSATGSFSTCLDRLADELADPVADRIIESLRM 183
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAAS------LGPKLTVPMIIFFL 307
+ G +G LR L + R + AE + L P I+ L
Sbjct: 184 AREVGGTDLGRLLRTLSTFLREDARTRAELETRQGWTVNAARLALAAPWIVLLL 237
>gi|184200571|ref|YP_001854778.1| hypothetical protein KRH_09250 [Kocuria rhizophila DC2201]
gi|183580801|dbj|BAG29272.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
Length = 285
Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 4/171 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ I + + G +L + + V P ++ +R + ++ WP
Sbjct: 51 LGAFIGLSLLLAGVAGVLVLALTSAAVFGLCVFLVTLWVPLWFVRRRAHRRTAVLREVWP 110
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D +D L + +G+ + +AL ++ PL A+ +
Sbjct: 111 DVVDHLRSAIRAGMGLPEALMQLQ---YRGPEPLRPAFARFAADYRASGQLHGSLTMLKQ 167
Query: 245 RTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASL 294
R N +AL + G +G L L R +E +A
Sbjct: 168 RLADPVADNIVEALRVTREVGGTDLGKLLGTLSEFLRENERTRSELEARQS 218
>gi|237733160|ref|ZP_04563641.1| predicted protein [Mollicutes bacterium D7]
gi|229383704|gb|EEO33795.1| predicted protein [Coprobacillus sp. D7]
Length = 315
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 78/202 (38%), Gaps = 9/202 (4%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I G+ I L + + + + + G + ++ + ++ + +
Sbjct: 86 TCIAAASGVFIIAAIIAKLLFKAGPMLMVYLGLVFAGAVL--LAVNKRAETKKEELTLEF 143
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ ++ + + G +I AL + ++ S L E++ L+ +F Y
Sbjct: 144 LEKINEISAHLSVGKTIPNALDEIIKE-QNTSQVLINELITVKQNLNLGYPLSKSFMLAY 202
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA----ASLGPKLT 299
Q++ ++ L + G +I + L+ + +S+ ++ +K KLT
Sbjct: 203 EHLQIEEIKTFAMTLSVYEETGGNIIEVLKANDNFFQSKIKIKNTQKVYISSLKTSQKLT 262
Query: 300 VPMIIFFLPVLILVIIGPAILS 321
V + + F +++++ I P+
Sbjct: 263 VGIPLGF--IVLVIFINPSFFG 282
>gi|297581612|ref|ZP_06943534.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
gi|297534019|gb|EFH72858.1| flp pilus assembly protein TadB [Vibrio cholerae RC385]
Length = 299
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 4/189 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L + + +L + A+ L L QKR + PD +
Sbjct: 73 GLLSLAALVIVPSVLCFNGMDFYIAIPLTLLTLVLVVWFAYQQLQQKRMERFRDELPDII 132
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L+ + G + + +A G + L + EL + R
Sbjct: 133 DGLIRALRVGAPMLAVFQDIANQHQGVTSRL---FHQIVDELRVGRTMADVMKLAAQRMP 189
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ R T L G + + L L + RS + A + + + + ++ L
Sbjct: 190 IAEFRFLTIVLSLQQETGGRLANVLERLGNTLRSRAELNASIQTITSESRNSAK-VLAAL 248
Query: 308 PVLILVIIG 316
PVL+++++
Sbjct: 249 PVLVMLVLF 257
>gi|330969402|gb|EGH69468.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 220
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 80/201 (39%), Gaps = 5/201 (2%)
Query: 54 ILRKQQITSLQKDSASSRLRTRDSKSLRNFVK-KLNLKAILVDENIVNKLRAAGFRSEYS 112
R + ++ +R LR ++ ++I +D L G+R
Sbjct: 23 RQRSNERLVARRLRGQVIRESRIGSLLRLLGDTRIGQRSISLDSETQILLNRIGWRRASK 82
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
++ ++ VP+ +++ I+ + K ++ P + A I G+ P ++ +
Sbjct: 83 RSLFAACQVGVPVGLMVVAILGQMLFFKGVQQP----LIAPIFALGAGYLLPKRILATVA 138
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++RQ + + LL I ESG++++QALR ++ + LSEE+ + + +
Sbjct: 139 RRRQKQVVVEISTFIPLLRILFESGMAVEQALRVLSNEGKDLLPVLSEEIRVVLTRVDSG 198
Query: 233 PNRQVAFENFYNRTQMDCVRN 253
+D + +
Sbjct: 199 LELGEELRKTAAVLDVDELSD 219
>gi|14590541|ref|NP_142609.1| hypothetical protein PH0654 [Pyrococcus horikoshii OT3]
gi|3257062|dbj|BAA29745.1| 308aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 308
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 97/242 (40%), Gaps = 19/242 (7%)
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
S L ++ + K L ++ L +AG + S +V+ L+ +I +L I+
Sbjct: 10 VSSRLAKVIESVVPKKYLKRYDL--LLYSAGIDFKAS--EYIVISLIFGVIGGVLAFIFT 65
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L + + + ++ + + +R ++RA PDA L +
Sbjct: 66 DSLKILTISFLIVFLTFL-----------YLYPNFRIVRRIEEMERALPDAFFYLAGSLR 114
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNA 254
+G+S +AL ++ + L+ E + T+AE+ A F R + + +
Sbjct: 115 AGVSFSEALEELST---AKFGALTREFMRTVAEMKRGRPTVDALRAFALRNKKSLVIYRS 171
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+I++ G + D L + ++ R ++ E+KA++ + F+ I+ I
Sbjct: 172 MMIVIEALERGAPMADVLIAVGNDVREILRIKKERKASTGMQMMFFLTSGGFVGPFIVAI 231
Query: 315 IG 316
+
Sbjct: 232 VS 233
>gi|254245562|ref|ZP_04938883.1| type II secretion system protein [Burkholderia cenocepacia PC184]
gi|124870338|gb|EAY62054.1| type II secretion system protein [Burkholderia cenocepacia PC184]
Length = 204
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 5/173 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ A G VW+++ +Q+R+ I R P LD ++ V G S+ A +
Sbjct: 1 MLACFAAIICGSAILGVWLASRIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQ---S 57
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ PL + + L A + + + L S +YG
Sbjct: 58 ALLTTEEPLRGCLDVVSRMLRGGIEIDRAMMHIAKIYRTEEFELVGSVLRLSVKYGGRAD 117
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAIL 320
L + R E E A S +L+ +++ + +V+ P L
Sbjct: 118 VMLERMAVFMRDLEQAERELTAMSSETRLSAFVLVMLPIAIGSFVVMTNPKYL 170
>gi|282853288|ref|ZP_06262625.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
gi|282582741|gb|EFB88121.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
Length = 249
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 84/194 (43%), Gaps = 6/194 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ G++ + +PF G +L+G V + ++ ++ + P+AL
Sbjct: 57 LAGLVAACAVLVGVPWPFPAAAGLSVLVGAVMWWGSGRLEASGHRRMEQHRAAQLPEALL 116
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L +E+G+ + A+ VAE + G P +E++ + L+ A+ + +
Sbjct: 117 MLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDSRAWNDLA---SV 170
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ R+ Q + ++ G I + L ++ + +AEKKA G P++ LP
Sbjct: 171 EVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAGVDAIGPLVCCHLP 230
Query: 309 VLILVIIGPAILSI 322
+LV + P I +
Sbjct: 231 AFLLVGVVPIIAGM 244
>gi|227876610|ref|ZP_03994720.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269976144|ref|ZP_06183140.1| putative type II secretion system protein [Mobiluncus mulieris
28-1]
gi|306817559|ref|ZP_07451302.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307699933|ref|ZP_07636984.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
gi|227842811|gb|EEJ53010.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|269935473|gb|EEZ92011.1| putative type II secretion system protein [Mobiluncus mulieris
28-1]
gi|304649601|gb|EFM46883.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307614971|gb|EFN94189.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
Length = 386
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 41/291 (14%), Positives = 100/291 (34%), Gaps = 20/291 (6%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
++ + ++ +L+ ++ + T L + ++ E
Sbjct: 111 RHRFRGQVARNPLATLHHKEATAAALRAMFIATAVSTEVGAPLAEILTRVADGIAAQLEA 170
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ A + LL V + ++ + + G + V +L+
Sbjct: 171 GAKR--HAAQVGPRATARLLGVLPLAALVMASFIGVDVLGMALSGGLNTGIFVVGAVLMV 228
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPD--ALDLLLICVESGISIDQALRRVAEDIGGQS 215
++W ++++ + A+D++ C E+G+S+ +L+ V+
Sbjct: 229 VG-----NLWSHAMIRRAMNPGVSGLDPTLAMDIIAACQENGVSLTASLQAVSAASSETD 283
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + L + + A+ + + + L + G S L
Sbjct: 284 ------LAVVARMLLLGASWEEAWSDSDGKW-----EQLSDVLQPAWEEGASPVPLLVRG 332
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ TR+ EA A LG +L VP+ + LP + I P ++S ++ +
Sbjct: 333 AARTRAHLTHEAVNAAEKLGVRLVVPLGVCLLPAFFALGIVPVVVSTLEGL 383
>gi|228950020|ref|ZP_04112208.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809667|gb|EEM56100.1| hypothetical protein bthur0007_60920 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 288
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/236 (20%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ P+IF + +I +D L
Sbjct: 66 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPVIFTSVFLICTVFHDYYLFK-------VG 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 117 VLISPLLYFYPDYLLKKRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 174
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 175 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 230
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 231 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 283
>gi|256393178|ref|YP_003114742.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256359404|gb|ACU72901.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 297
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/314 (13%), Positives = 102/314 (32%), Gaps = 18/314 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGE-LEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+ A+ + +V L + M +++ + + +
Sbjct: 1 MMTALICGGGFGLAVAVLVYGLYPPKPTLAQAMSALSASTAPAPILASKADGWVARAGAP 60
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
L + +++ + L G + +
Sbjct: 61 LAGFLGGLGLPGARARKDLAVLERSTSAHLAQKGM--------------LAVLGLGAPLA 106
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + L + + GF AP I +R+ + RA LDL+ +
Sbjct: 107 MAALMSAAGSPLGWLLPLWLSVAFAAAGFLAPDYVIRAEAAERRKDMVRALSAFLDLVTL 166
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G ++ AL+ A +G + L AE+S + +
Sbjct: 167 SLAAGGGVEAALKE-ASLVGDGWAFTALRKALATAEISR-VAPWQTLGQLGAELDVPALG 224
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+L + G + SL + R+ L EA+ +A + ++++P+++ L +L
Sbjct: 225 ELAASLALAGSEGAKVRASLSAKAATLRANGLAEAQGEANAASERMSLPVVVMGL-GFML 283
Query: 313 VIIGPAILSIIDTM 326
+I PA+ +++ +
Sbjct: 284 LIGYPAMAHVMNGL 297
>gi|119716452|ref|YP_923417.1| type II secretion system protein [Nocardioides sp. JS614]
gi|119537113|gb|ABL81730.1| type II secretion system protein [Nocardioides sp. JS614]
Length = 303
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/314 (15%), Positives = 109/314 (34%), Gaps = 15/314 (4%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
++A+A T + + + I L + ++ + + R+
Sbjct: 1 MTGLQIALASGTLIGLALALLVWRIAPSDPD-LVDALDRLSPDHVVPRRNTPGLDVDTGT 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S + +++ NL L + S ++V + L
Sbjct: 60 GSAVDRIGLWAMK------NLPGGAWAHTPRKDLA----ILQISETRFYGEKVVWAALGL 109
Query: 129 ILG-IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I+ ++ F L PF + + + + + P+ ++ +K + RA +
Sbjct: 110 IMPPLLAAFFTLIGLPLPFAIPTLGSLALAALFWFMPNYNAADDAKKARIEFSRALGAYI 169
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D++ V G S QALR AE E L ++ + +
Sbjct: 170 DMVATGVRDGSSGQQALRSAAEVGDKWVFKRIESELRRARYMT--RAPWDSLHGLADELA 227
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + + + QS + G I ++LR + RS L KA + ++ +P + +
Sbjct: 228 VPELDDLADIMQQSGQDGAQIYNNLRARAAALRSAMLSAEVGKANATSERMYIPASLLGI 287
Query: 308 PVLILVIIGPAILS 321
V + +++ P++L
Sbjct: 288 -VFMAILVTPSLLR 300
>gi|229829728|ref|ZP_04455797.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
14600]
gi|229791717|gb|EEP27831.1| hypothetical protein GCWU000342_01825 [Shuttleworthia satelles DSM
14600]
Length = 464
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 69/180 (38%), Gaps = 8/180 (4%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + A V++R+ + R +P + + + + +G+++ AL R++
Sbjct: 284 LLALGFTGALLMLFAQKKSRMEAVKRRRENADRDYPSIISEIALYLSAGVTVKNALERIS 343
Query: 209 EDIGGQSV------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+ E + L + + + + A+E++ R + LIQ+
Sbjct: 344 AAYEERRKQGQTGHEGYEALSLLVRRMKEGISERQAYEDWPGLCPTASYRKLSMLLIQNL 403
Query: 263 RYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ G + + + +K +L +PM+ L V++++++ PA+
Sbjct: 404 QRGNRRLAELFEEEKQRAEEAGRLRCKKLGDEASTRLLIPMV-GLLAVVLMILLAPALFM 462
>gi|313837846|gb|EFS75560.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
Length = 307
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/322 (13%), Positives = 105/322 (32%), Gaps = 27/322 (8%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
D T L++ V++ L+ +L ++ V+ + +Q +
Sbjct: 9 DPMTTTALSLLAGAVVTVGLLVITAAFRPAPGPDLVAALEVVSGRTSSVDEQIDQTRIGR 68
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
S RT L L+ + RL+ +
Sbjct: 69 LGRSVTRTFHLSVSPAMRAALRLQG-------------------TTPEAFYGRRLMSALA 109
Query: 127 FLILGIIW--IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
IL + I + + + G+ P+ + A
Sbjct: 110 GAILPWLLNAIAIAVGANFPSLLIPAALCVALAGAGWMLPAARLKAATGPTNDDSFEALL 169
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFY 243
+DL+++ + + AL A PL ++ + + + +
Sbjct: 170 VFIDLVVLERLANETSVDALTNAAHV---SDAPLFIQIRQVLNRAALENVDPWNGLDRLA 226
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ + + + G S+ DS R V+E R L+ ++++ ++ +L + +
Sbjct: 227 DDIKLPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTV 285
Query: 304 IFFLPVLILVIIGPAILSIIDT 325
+ ++L+++G A L++I T
Sbjct: 286 LQA-GSVMLILLGAAALTLITT 306
>gi|167894488|ref|ZP_02481890.1| type II secretion system protein [Burkholderia pseudomallei 7894]
Length = 215
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 25 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 81
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 82 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 141
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 142 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 184
>gi|329765281|ref|ZP_08256861.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138187|gb|EGG42443.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 304
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/204 (20%), Positives = 80/204 (39%), Gaps = 5/204 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVG--AVILIGYVGFCAPSVWISNLVQKRQSS 178
+ I+F I+ + + + + I+ G + P +R+ S
Sbjct: 27 ITKTIMFSIIASVSVILISLEFSKLLESSMIRDVGIIFGIMVGIIPLTIHQLREVQRRDS 86
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I R P L LL V+SG ++ +A+ + AE L+ E+ A +S+ + A
Sbjct: 87 IDRNMPVFLLALLSSVQSGSNLIKAIEQAAE---RNLGALTPELKNLKANISWGTPIEDA 143
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
FENF RT R T L + + G + ++L ++ + +E +K+A
Sbjct: 144 FENFAKRTGTRVSRRVTVLLEMAMKIGGDVSENLEMIQKHVSEMQNIEKSRKSALQPYTY 203
Query: 299 TVPMIIFFLPVLILVIIGPAILSI 322
T+ + + +++ I
Sbjct: 204 TIYISFAVFLAVSVLLTTSFFSEI 227
>gi|269216231|ref|ZP_06160085.1| putative TadC protein [Slackia exigua ATCC 700122]
gi|269130490|gb|EEZ61568.1| putative TadC protein [Slackia exigua ATCC 700122]
Length = 212
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 4/146 (2%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQ 236
I+R + D + + + +G+S D A L+ S R
Sbjct: 69 RIERHASELFDAVSLGMRAGLSFDAAFALYCTRFDD---ELAGVCRDAHRAWSTGVLTRA 125
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + ++ + + + ++ R+G+ +G L L E+ + E++ A
Sbjct: 126 EALASIASKARSPTLERFAANVERNVRFGSPMGRMLDALSRESSGAYRTKIEERVAKAPI 185
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
++ +P LP +++VI+GP +L +
Sbjct: 186 EMLIPTATLILPAMLIVILGPVLLDL 211
>gi|326943572|gb|AEA19465.1| hypothetical protein CT43_P281123 [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 288
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 66 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + AE G
Sbjct: 117 VLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAEIYAG 174
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 175 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 230
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 231 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 283
>gi|56460010|ref|YP_155291.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
gi|56179020|gb|AAV81742.1| Flp pilus assembly protein TadB [Idiomarina loihiensis L2TR]
Length = 233
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 75/194 (38%), Gaps = 5/194 (2%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+P+ L+ + + L+ + + R + + AP +L ++R I++
Sbjct: 1 MPVTILVRSYLVVTLLSPLIVWFYVNRTW-AVATFILTLLAPPFVYRHLKKQRYIKIEKQ 59
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L L + SG S+ AL+ G PL +E+ + + E++
Sbjct: 60 LPGMLIGLSNQLRSGTSVGAALK---NLKGTLLAPLGQEVDELLRQEKVGKPLTDCLEDW 116
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + ++ Q+L+ + G D L + ++ ++ + + ++
Sbjct: 117 QRRVPVFSIKLVVQSLVLGLKSGGQQSDLFLRLADNLQQQQHIKERQITLTSQARMQAK- 175
Query: 303 IIFFLPVLILVIIG 316
I+ +PV + ++
Sbjct: 176 ILVMMPVGLYFLLS 189
>gi|332284567|ref|YP_004416478.1| type II secretion system protein [Pusillimonas sp. T7-7]
gi|330428520|gb|AEC19854.1| type II secretion system protein [Pusillimonas sp. T7-7]
Length = 282
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 8/222 (3%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV---- 153
+ L A R + + RL +F+ +W+ + + V A
Sbjct: 21 LQKWLGKAYVRYQQAFKKQASERLDEFFLFVDPAQLWLANIALCMVLMAVVYVLAGSGVL 80
Query: 154 -ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
G G P I + + R PD L L + +G + AL+ + +
Sbjct: 81 LAFSGVTGLLVPQYVIGRIRKLRLQRFDEQLPDLLQALAGALRAGAGLQSALKHI---VA 137
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
PLS+E L + + + A + Y R + AL + + G ++ ++L
Sbjct: 138 QSPAPLSQEFGLMLRQQRMGIGFEQALADLYRRMPFEGTGLVVSALTIAAQSGGNLAETL 197
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + R+ + + +A + +L ++ PVL +V+
Sbjct: 198 ESIAATLRARLRLLSRVQALTSQGRLQAWIMAGLPPVLAIVL 239
>gi|291520244|emb|CBK75465.1| Flp pilus assembly protein TadB [Butyrivibrio fibrisolvens 16/4]
Length = 245
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 80/191 (41%), Gaps = 4/191 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
++ G ++ + F + ++ + + + +++ + + + +
Sbjct: 20 LIPFFQALGISVIVAFLFYKSIYGILSGLLIVPFWLKLKSEEIKAEKRGRLSAEFKEFMM 79
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNR 245
L++ +++G S+++A+++ ++ ++ ++ + +++ + AF F
Sbjct: 80 LIVASLQTGYSLERAIKQSEVELHKLYPNGCIIAGQVHILNQKIAMNVQLEKAFFEFAKA 139
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++ + + + + R G + G +R + L++ E + + +L + ++
Sbjct: 140 IELEEALSLAEIISFAKRSGGNYGKHIRDTALKIEENILIKQEIETITTEKRLELK-VMC 198
Query: 306 FLPVLILVIIG 316
+P+ IL I
Sbjct: 199 IMPIGILAYIS 209
>gi|213966042|ref|ZP_03394231.1| type II secretion system protein [Corynebacterium amycolatum SK46]
gi|213951337|gb|EEB62730.1| type II secretion system protein [Corynebacterium amycolatum SK46]
Length = 217
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 8/138 (5%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ C+ SG+ + QA+ A G + L+E + A L+ A+++
Sbjct: 81 IIGACLSSGMPLSQAMEAAA---DGANPELAEPLRQCSARLAVGA--HSAWDSLA---AT 132
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ A ++ GT + +L + RS+ A+ A G + P+ + FLP
Sbjct: 133 PALEPLATAGRRASESGTVLAQALEDTAATYRSQAHDAAQAVAEKAGVLIAGPLALCFLP 192
Query: 309 VLILVIIGPAILSIIDTM 326
+++ + P I + D M
Sbjct: 193 AFVVLGLVPTIAGLADEM 210
>gi|167845913|ref|ZP_02471421.1| type II secretion system protein [Burkholderia pseudomallei B7210]
Length = 216
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 26 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 82
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 83 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 142
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 143 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 185
>gi|292656513|ref|YP_003536410.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291371605|gb|ADE03832.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 708
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 86/191 (45%), Gaps = 5/191 (2%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
D +L P+ V V+L + P L +R+ +++R +PD L+LL +
Sbjct: 452 TLDAMLANPYNTTVWFVVLPFAIVAV-PLTVFHELRTRRERTLERRFPDTLNLLSSANQM 510
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
GIS+ ++L V+ + L++E+ ++ + + A F R + + +
Sbjct: 511 GISLVESLALVSR---WSTGALADELRALRNDIRWNHDAHAALMAFATRLNVPQLSRVIR 567
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ R + L V +TR+ +E ++ ++G + + +I +F+ + ++++IG
Sbjct: 568 LIASGGRTSGDLSRVLSVAAEDTRNRYKLEKSRR-RAMGSYIAIVVIGYFVYLFVILMIG 626
Query: 317 PAILSIIDTMK 327
+ L + M
Sbjct: 627 ASYLGPLAEMS 637
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 4/199 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ + G + K+ L L + A + + R SI P
Sbjct: 113 LGVATGYVAPLAPYKVPILGAALVALVGGLAAAGTYYARYYLPKSRAEMRGRSIDILLPH 172
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYN 244
A+ + G+S + +R VA+ +S E + ++ + A N N
Sbjct: 173 AIVYMYALSHGGMSFLEVIRSVAD--APDYGEVSREFEMIARDMDLFGNDLFTALRNSRN 230
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
T L+ G + L + E E E +L L+ +
Sbjct: 231 LTPSINFEQFLDDLLSVLDSGGDVTAFLDRESATYLEEARDEQEDFIETLS-MLSEVFVA 289
Query: 305 FFLPVLILVIIGPAILSII 323
F+ +L+I+ ++S +
Sbjct: 290 AFVAAPLLLIVTLMVISFL 308
>gi|94312589|ref|YP_585798.1| type II secretion system protein, pilus assembly, transmembrane
part [Cupriavidus metallidurans CH34]
gi|93356441|gb|ABF10529.1| type II secretion system protein, pilus assembly, transmembrane
part [Cupriavidus metallidurans CH34]
Length = 309
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 16/260 (6%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
+ + + A + L + + + + ++ + R++
Sbjct: 25 AAARSRSRAEDARAHLTAQTEQVRARYATVSDPTPQSATRDLRRRWDDLMRRADLKPTRR 84
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + VP++ +LG G + ++ +++ +
Sbjct: 85 TYLVVGVPMVLAVLGGAIAGGGIGAGAMLVMVLTLLC------------FFVWLRIRRIK 132
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ R P LD ++ + G S+ A + + PL + ++ I
Sbjct: 133 EKMLRQLPGFLDGVVRLMTIGSSVPAAFQ---NSVANTEPPLRQCLVQVIHLQRAGKELD 189
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A +D + + L S RYG + + R + E A S
Sbjct: 190 QAVLQMGRAYDLDELVIVSSVLRLSQRYGGRADVVMERTATFMRDREEAQRELMALSAET 249
Query: 297 KLTVPMIIFFLPVLILVIIG 316
+++ ++ LP+++ +
Sbjct: 250 RMSA-WVLGLLPLIVGGGMF 268
>gi|167719784|ref|ZP_02403020.1| type II secretion system protein [Burkholderia pseudomallei DM98]
Length = 220
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 7/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
W+ + +QKR+ I R P LD ++ V G S+ A + + PL +
Sbjct: 30 LAVFWLVSRMQKRRLRIVRQLPSFLDGIVRLVTLGNSVPAAFQAT---LQTTEAPLRGCL 86
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + ++ L S +YG L + R
Sbjct: 87 DHVSRMLRSGVEIDRAMVSIAALYRIKEFELVGSVLRLSVKYGGRADVMLDRMAVFMRDL 146
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E E A S +L+ ++ LPV ++ P S +
Sbjct: 147 EQAERELVAMSAETRLSA-WVLGALPVGIGSFVIATNPKYFSAM 189
>gi|301068122|ref|YP_003786893.1| hypothetical protein BACI_pCIXO100800 [Bacillus anthracis CI]
gi|300379212|gb|ADK08115.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 288
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ P+IF + +I +D L
Sbjct: 66 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPVIFTSVFLICTVFHDYYLFK-------VG 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 117 VLISPLLYFYPDYLLKKRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 174
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 175 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 230
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ +++ P ++ I M+
Sbjct: 231 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVMYPMVIVIQSLMQ 283
>gi|257064724|ref|YP_003144396.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
20476]
gi|256792377|gb|ACV23047.1| Flp pilus assembly protein TadB [Slackia heliotrinireducens DSM
20476]
Length = 332
Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/300 (14%), Positives = 88/300 (29%), Gaps = 19/300 (6%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ A A + + + A + S + KS + +K
Sbjct: 1 MEGVVFAGAGVVSAACSGAVLA-GLAYAWSAKAWSSAKSQDAGVYTSGVSWRDNAEKMVR 59
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ + + KA E V L G+ + + + ++
Sbjct: 60 YLMRNGLPLFGFAARMVRRSRKASRYLEGAVRLLIRKGYAAN--------AQSICELMCA 111
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + G L + + V S+ + Q+ ++ PDAL
Sbjct: 112 LAVFGFALGLAVSGSLVAALCLSGGCVFAVVAAG------SHAADEEQNRLRELVPDALR 165
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ C ++G+S+ Q AE PLS+ ++ + A + F + +
Sbjct: 166 CMESCFQAGLSLPQTF---AETARETEPPLSQTFAQVSHDIELGHSVDEALDRFRLGSGL 222
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ AL G LR+ + + + KL+ I+ +P
Sbjct: 223 PELAFVAVALDVQYVSGGDATSVLRIAQDSVDHALELRRTLRVQTAQAKLSAQ-IVSAMP 281
>gi|239979682|ref|ZP_04702206.1| hypothetical protein SalbJ_09607 [Streptomyces albus J1074]
gi|291451547|ref|ZP_06590937.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354496|gb|EFE81398.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 311
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+++ QKR + PD LL +G+++ AL AE++ P EE+
Sbjct: 124 FLNWQRQKRIEAFINQLPDVARLLANATAAGLALRTALAMAAEELE---APAGEELCRVA 180
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+L+ + A R + L+ S++ G ++ SLR L + +
Sbjct: 181 DQLALGRSVDAALGELAERLPSRELVVLVTTLVLSNQAGGTVVSSLRNLTATLEERKETR 240
Query: 287 AEKKAASLGPKLTVPMI 303
E + T +
Sbjct: 241 REVRTMLSEVHATALTV 257
>gi|260439393|ref|ZP_05793209.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
gi|292808189|gb|EFF67394.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
Length = 261
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 6/167 (3%)
Query: 154 ILIGYVGFCAPSVWISNLVQ--KRQSSIKRAWPDALDLLLICVESGISIDQALRR---VA 208
+ + +W+ N K + ++ D + + + +G SI+ + +
Sbjct: 53 AVFIISPYIILHIWLRNKAYIVKCREKQIASFKDGIRFVNNSMHAGYSIENSFKEALIQM 112
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E + G+ + + + + AF + + + + + + L + R G ++
Sbjct: 113 EQVYGKDDDTYKGFKKIVGRIMLNIPIEQAFYQYAVESGTEEILDFAEILKFAKRSGGNM 172
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + + ++ E G K MI+ +P I++ +
Sbjct: 173 SHIINNTANIITEKISLKQEISTVIAG-KKFEQMILSAVPAGIILYM 218
>gi|228925183|ref|ZP_04088293.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228834522|gb|EEM80051.1| hypothetical protein bthur0011_60550 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 288
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 66 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 117 VLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 174
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 175 RH--LRPYVSTLTAELEMYAGSDQPFRNFAASLNSPEVNTFTIALQQAQK--TDKVQSLR 230
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 231 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 283
>gi|291460201|ref|ZP_06599591.1| putative type II secretion system protein F [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417148|gb|EFE90867.1| putative type II secretion system protein F [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 483
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 63/151 (41%), Gaps = 8/151 (5%)
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI--- 211
+ + S+ + +KR+ S+ + D + LL+ + +G+S+ A +++E
Sbjct: 306 FSAVLLYLRESLRLRERAKKRELSLLLDYSDLVSKLLLYLGAGLSLRNAFEKISEHYEAL 365
Query: 212 ----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT- 266
G+ LS E+ + +L + A+ +F R + + Q R G+
Sbjct: 366 PREGPGEERALSGELRTMLLQLKSNVSESEAYRSFARRISLKPYARLIALIEQKRRNGSR 425
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
++ ++L++ + + R A++ K
Sbjct: 426 NLREALKLEMEDAFECRKNTAKRLGEEASTK 456
>gi|226349292|ref|YP_002776406.1| hypothetical membrane protein [Rhodococcus opacus B4]
gi|226245207|dbj|BAH55554.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length = 299
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 4/210 (1%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWI 168
+L +LV ++ L++ + + I ++ F P + I
Sbjct: 87 HRDPAHVLGEKLVAALLGLLIFPFLNLVLTAFGVGLGWSIPAILSIATAFLLFLIPDIEI 146
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
++ +A +DL+ +C GI Q+L R A+ +G V L + L A
Sbjct: 147 RRRATAARAEFAQALSSYIDLVALCRRGGIGTTQSLERAAQ-VGDSWVFLRLDEELYEAG 205
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
A + + + + + + G S+ SLR + RS + +
Sbjct: 206 -RSGEAPWNALTRVSHELGLTELGDLADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQ 264
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
AA KL +P+ + I++++ PA
Sbjct: 265 GAAAEATEKLAMPL-AGLAGLFIMLLLIPA 293
>gi|225871557|ref|YP_002752915.1| hypothetical protein BCA_A0068 [Bacillus cereus 03BB102]
gi|225785622|gb|ACO25840.1| conserved hypothetical protein [Bacillus cereus 03BB102]
Length = 240
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 18 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 68
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 69 VLISPLLYFYPDYLLKKRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 126
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 127 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 182
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 183 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 235
>gi|84494454|ref|ZP_00993573.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
gi|84383947|gb|EAP99827.1| hypothetical protein JNB_06649 [Janibacter sp. HTCC2649]
Length = 289
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 23/218 (10%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ ++L AG+ + +L+ ++FL + + +
Sbjct: 40 RLRDELVQAGYPTVTPRALLVGCTAAFLLVFLFVYAVVGVP-------------AISLCF 86
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G + P + ++R++ ++ WPDA+D + V +G+S+ +A+ A+
Sbjct: 87 GLMAAWGPYALVRMRARQRRNRLRDLWPDAVDNITSAVRAGMSLPEAV---AQLGLRGPE 143
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVL 275
L + + R ++L + G +G LR L
Sbjct: 144 ELRPAFQAFAQDYRITGRFHDCLDRLKERLSDPVADRLIESLRIAREVGGSDLGRLLRTL 203
Query: 276 VSETRSERLMEAEKKAASLGP------KLTVPMIIFFL 307
R + +E + + P I+ +
Sbjct: 204 SVFLREDSRTRSELETRQSWTVNAARLAVAAPWIVLAM 241
>gi|116052335|ref|YP_792646.1| hypothetical protein PA14_55880 [Pseudomonas aeruginosa UCBPP-PA14]
gi|254239029|ref|ZP_04932352.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
gi|296391000|ref|ZP_06880475.1| hypothetical protein PaerPAb_22729 [Pseudomonas aeruginosa PAb1]
gi|313106820|ref|ZP_07793032.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
gi|115587556|gb|ABJ13571.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170960|gb|EAZ56471.1| hypothetical protein PACG_05206 [Pseudomonas aeruginosa C3719]
gi|310879534|gb|EFQ38128.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016]
Length = 294
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/232 (13%), Positives = 79/232 (34%), Gaps = 21/232 (9%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ ++R AG + +L ++ ++ +L +
Sbjct: 48 RPRSSHWLARQMRRAGIQRPRP----------WLFGAAVLALLLVWSGLRLFG------I 91
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ + + V + L Q+R + R P LD ++ + +G ++ AL + E+
Sbjct: 92 VGALGGLLLAALSCRVALGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALMQAVEN 151
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
PL + L + + A + +++ +R + + RYG + D
Sbjct: 152 ---AEEPLRDIFTLARNHVLLGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSD 208
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL--ILVIIGPAIL 320
L +V + + A + +++ ++ L ++ P L
Sbjct: 209 LLDSIVKLIHEREKLSRQLHAMTGETRISAYVLAGVPSALGGYILASNPGYL 260
>gi|229816457|ref|ZP_04446758.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
13280]
gi|229807999|gb|EEP43800.1| hypothetical protein COLINT_03511 [Collinsella intestinalis DSM
13280]
Length = 222
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 5/193 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-KRAWPD 185
++ G+ G + + V ++G + F +++ R I +
Sbjct: 25 GVLCGLAAWLGSEDGALEMARACCAHVRVVGGLAFRKMRALALEMLRPRSRGIGMGEVAE 84
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP-NRQVAFENFYN 244
D++ + + +G+S D +L E G+S L++ M + +R A +
Sbjct: 85 MTDIVRLGLSAGLSFDASLSLYCE---GRSGELAQLMEKALFCWQVGVTSRDEALDRVAQ 141
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + + A+ Q+ G + ++L E R+ E++ KL +P
Sbjct: 142 DAGVRALGSFAAAVSQALELGAPLAETLEGQGREMRAAHRAHVEREIERAPVKLLIPTGT 201
Query: 305 FFLPVLILVIIGP 317
LP L+L I+GP
Sbjct: 202 LILPALLLSIVGP 214
>gi|291525764|emb|CBK91351.1| hypothetical protein EUR_23630 [Eubacterium rectale DSM 17629]
Length = 290
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/304 (15%), Positives = 104/304 (34%), Gaps = 20/304 (6%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
+++ V + L + R T + S L K
Sbjct: 3 LILFCVFLTFSIGLFLLLAGLLRLPTLKTSRVMMDTGKEGKQLSKTLDAFYMDGAVKIAK 62
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
+ + + + N LRA+G + + LI+ +++F
Sbjct: 63 YIRMNDYKKN-RMANVLRASGLGMTPEVYTAYAYLKAGSVFLLIIPALYVF--------- 112
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
L VIL+G + + ++++++ I+ + + +++ + L
Sbjct: 113 -PLAALFVILLGIMIYYKEIQKADEMLKEKREQIEEELYRFVSTITQELKNSRDVLSMLE 171
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
E+ G +E+ + A++ + + A F R + + + LI R G
Sbjct: 172 HYKENAG---AAFRKELDIVCADMRS-SSYEAALTRFEARLNSPQLSDVVRGLIGVLR-G 226
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSI 322
++L + + + KAA + PK+ + M++ FL +II I+
Sbjct: 227 DDGAVYFQMLTHDFKQTEFQRLKAKAAKIPPKIRVYSFAMLMCFLATYFAIIIY-EIIRS 285
Query: 323 IDTM 326
+ T+
Sbjct: 286 MGTL 289
>gi|255316490|ref|ZP_05358073.1| hypothetical protein CdifQCD-7_19177 [Clostridium difficile
QCD-76w55]
Length = 317
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 19/225 (8%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG+ Y V+ L + I ++ +I + + I+ ++G+
Sbjct: 75 LQAGYNINY--GEYSVICLAMAISLPLIMMILL------------KNIILAIVFIFIGYS 120
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + L KR + ++ + +++ + +I ++L D G PL E+
Sbjct: 121 VPWQFFKTLSNKRVTKMESQIGSFIRIIIERYKINKNISKSLVETLPDFQGS-EPLYSEL 179
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT--SIGDSLRVLVSETR 280
++ ++ + + RT ++ + S + S L ++
Sbjct: 180 KKSVVDIDLGIPIEEVLSSLARRTGSKYLKLFSNYYEVSSMLSSQESKIKILTTSFNQYE 239
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--IIGPAILSII 323
R+++ + + +GP +++F +PVL+L + L +
Sbjct: 240 DNRIIKRDLRKEIMGPVRESYIMVFAIPVLMLYQSFVSDGYLDFM 284
>gi|160941846|ref|ZP_02089173.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC
BAA-613]
gi|158435343|gb|EDP13110.1| hypothetical protein CLOBOL_06742 [Clostridium bolteae ATCC
BAA-613]
Length = 290
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 105/312 (33%), Gaps = 25/312 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + + +F L A L +G L R+ S+ R + ++
Sbjct: 1 MISLLFVFGLSLAFGFYFLAAGVL--RLPSMGAAR-----AIAERGSRKQKAAEFLEDGM 53
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
L + + N L+AAG + + +V + I + +
Sbjct: 54 DQLSVLLASHITLDEYRKRRMGNILKAAGM--GMTPEVHAASCMVKAGVTAIPILPCLLF 111
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ P + + S +++++ +++ P + + ++S
Sbjct: 112 LPLVTPVP--------VFAAVAVYFRESRRPEERLKEKRDRVEQELPRFVATIEQDLKSS 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ L ++ L E+ + A++ + + A F R + + +
Sbjct: 164 RDVLSILENFKKNTSDT---LRAELDILTADMRSG-SYEAALTRFEARMNSPMLSDVVRG 219
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVI 314
LI R G ++L + + + +K+A + PK+ + M++ FL + +I
Sbjct: 220 LIGVLR-GDDSAAYFQLLSHDFKQLEMQRLKKEAQKIPPKIRIFSFLMLLCFLMTYLAII 278
Query: 315 IGPAILSIIDTM 326
I S+ +
Sbjct: 279 GYEIIKSLGNMF 290
>gi|302384578|ref|YP_003820400.1| hypothetical protein Closa_0134 [Clostridium saccharolyticum WM1]
gi|302195206|gb|ADL02777.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 420
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 76/182 (41%), Gaps = 12/182 (6%)
Query: 151 GAVILIGYVGFCAP---SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+L + P N + R+ + + + + L++ + +G+++ A R+
Sbjct: 238 ILPVLGILLAALLPLKGEFDRKNQARVRERQLLFDYSEVVSKLVVYMGAGLTVRGAWERI 297
Query: 208 -------AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+ P EEM+ T A+L + A+ F R + + L Q
Sbjct: 298 TAGYKDGVKQGKRSVRPAYEEMVKTAAQLGSGLSEGKAYSEFGRRCGVQVYIKLSALLEQ 357
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
S + G+ + +L + + +R A+K G KL +P+++ V++++I+ PA
Sbjct: 358 SQKNGSRQLRPALELEMVSAFEQRKNLAKKLGEEAGTKLLLPLLMML-GVVMVMIVVPAF 416
Query: 320 LS 321
LS
Sbjct: 417 LS 418
>gi|110833083|ref|YP_691942.1| hypothetical protein ABO_0222 [Alcanivorax borkumensis SK2]
gi|110646194|emb|CAL15670.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 268
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 82/199 (41%), Gaps = 8/199 (4%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + L + + VIL+ + + QKR+ I + P+ +D
Sbjct: 42 IAVGLLLFLALLAIIQAFVGLMFVILLLVSAILFAVFYWNYRYQKRRRLIFESTPEVIDD 101
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ +++G S++QAL + + + + + ++F ++
Sbjct: 102 VIRGIDAGRSLEQAL---VNALNDAPKVFFPLLFRLRSAVESGRDYTGLIDDFSKLYRIP 158
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ AL S YG+++ L+ + RS++ M E AA+ + T M LP
Sbjct: 159 PLTFVAVALRTSSHYGSAVRPVLKKVSRSLRSQQEMRREFLAATAETRFTA-MAFAVLP- 216
Query: 310 LILVIIGPAILSIIDTMKD 328
++IG +++ + ++ +D
Sbjct: 217 ---LVIGASLIGLNESFRD 232
>gi|298345868|ref|YP_003718555.1| hypothetical protein HMPREF0573_10742 [Mobiluncus curtisii ATCC
43063]
gi|304390427|ref|ZP_07372380.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|298235929|gb|ADI67061.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
gi|304326183|gb|EFL93428.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 408
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 52/293 (17%), Positives = 97/293 (33%), Gaps = 15/293 (5%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS--LRNFVKKLNLKAILVD 95
L +R R ++A+ LR + L V
Sbjct: 125 RPGLWERFNHWRAGRTTETNPLARVRHPEAAAQALRGMLIATQVATQVGAPLAEILNRVA 184
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ I L A R + RL+ + LG+ G D + V +
Sbjct: 185 DGIAATLETAAKRHTAQVGPKATARLLGVLPLAALGMAQFIGVDVIDMAFRGGINTWVFV 244
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPD--ALDLLLICVESGISIDQALRRVAEDIGG 213
IG A ++W + ++++ S A+D++ C ++G+S+ L V+
Sbjct: 245 IGLGLMVAGNLWSAAMIRQATGSSVTGLDPTLAMDIIAACQQNGVSLTSTLEAVSAASEE 304
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ + L + A+ + + L + G S L
Sbjct: 305 AD------LAVVARMLLLGADWDEAWAQADTKW-----VDLASVLQPAWEEGASPVPLLV 353
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
S TR+ + A A LG +L +P+ + LP + I P ++S I+ +
Sbjct: 354 RGASRTRTAEIHRAVDAAERLGVRLMIPLGVCLLPAFFALGIVPVVVSTIEDL 406
>gi|300779981|ref|ZP_07089837.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300534091|gb|EFK55150.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length = 225
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
GQ L + +A + A+ + + + S G+++ DS
Sbjct: 111 GQLAQLGQLWRRVVAYSELGIEPERAWAVMH---GVPGCEELASTVTLSHASGSAVADSC 167
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ R++ +A A G +++P+ FFLP ++ + P ++ + M
Sbjct: 168 DRIAESLRADAADDATAAAERAGVLISIPLAAFFLPAFFVLGLAPVVIGLGSDM 221
>gi|313835700|gb|EFS73414.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928371|gb|EFS92202.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970223|gb|EFT14321.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328908048|gb|EGG27807.1| LOW QUALITY PROTEIN: Type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 307
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 3/175 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ + + + + L ++ +G + Q+R + P+
Sbjct: 80 AVVAAVTILVSILVAVVFYNMLAPALAVVGVLLGLAGLWESVRRSQQRRTAKFVNQLPEL 139
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LL +G+S+ A+ V++++G P E L F + Q A + +
Sbjct: 140 ARLLANASHAGLSLPTAIAMVSDELGE---PARSEFAQVENRLRFGASLQTALDELASHV 196
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ V LI S R G S+ +LR + + E T
Sbjct: 197 RSREVTVLMSTLIVSARSGGSLVTALRGIADSLEERKETRREVTTILSQSLATAY 251
>gi|300694108|ref|YP_003750081.1| type II secretion system protein [Ralstonia solanacearum PSI07]
gi|299076145|emb|CBM10581.1| Type II secretion system protein [Ralstonia solanacearum PSI07]
Length = 308
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 8/189 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L+LG + + AV+L V N ++ + + P
Sbjct: 86 LLVLGPLAAVALGAWVVSSLMSAAMAVLLYALVAAFL----FWNRTRRMNERLMQQLPGF 141
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD ++ + G ++ A + + PL + + A +
Sbjct: 142 LDGMVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLTSATQLQRAGKDLDAAVLAVGQQY 198
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+++ + + L + RYG + + R + + E A S +L+ I+
Sbjct: 199 RVNELILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAETRLSA-WILGL 257
Query: 307 LPVLILVII 315
LPV++ II
Sbjct: 258 LPVVVGGII 266
>gi|261409011|ref|YP_003245252.1| Type II secretion system F domain-containing protein [Paenibacillus
sp. Y412MC10]
gi|261285474|gb|ACX67445.1| Type II secretion system F domain protein [Paenibacillus sp.
Y412MC10]
Length = 285
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 4/172 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+I + Y F + +L+G G P +W ++++R+ ++ + AL
Sbjct: 55 ACVILGGLLFCFIGYLFYHNLILSLLLGAGGLMIPKLWRRFMLERRRRTLNLHFKQALYS 114
Query: 190 LLICVESGISIDQALRRVAEDI----GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G S++ R +D+ G S L E+ + ++ L + +VA ++F R
Sbjct: 115 LSSSLSAGRSVENGFRDAVQDLLLLDPGGSSDLIFELKVIVSRLEYGEPIEVALQDFARR 174
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
M+ + N R G + + +R S + ++ E +
Sbjct: 175 AGMEDLTNFADVFSTCKRTGGDLVEVVRRTSSVIGEKLDIQQEISVMIAQKR 226
>gi|27365655|ref|NP_761183.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
gi|27361803|gb|AAO10710.1| Flp pilus assembly protein TadB [Vibrio vulnificus CMCP6]
Length = 294
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 3/187 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ G L + +IL+ + + + Q + PD +D +
Sbjct: 72 VMLTVGLFITLLSQGMAPLTTLILVVVISVMMTVLAFRHFEQLAINEFSMQMPDIIDSME 131
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
V+ G + ++E G + L L L + + + +
Sbjct: 132 RAVKVGAPLHDIFFALSEQYQGSAKRL---FLAMHDRLKLGHSVERVMQFAAQQMPSQEF 188
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R T L G + L+ L R LME+ + + + + ++ PVLI
Sbjct: 189 RFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRTSAKVLAILPPVLI 248
Query: 312 LVIIGPA 318
V+ G A
Sbjct: 249 GVLYGSA 255
>gi|167039382|ref|YP_001662367.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514]
gi|300914023|ref|ZP_07131340.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
gi|307725292|ref|YP_003905043.1| type II secretion system F domain-containing protein
[Thermoanaerobacter sp. X513]
gi|166853622|gb|ABY92031.1| hypothetical protein Teth514_0724 [Thermoanaerobacter sp. X514]
gi|300890708|gb|EFK85853.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
gi|307582353|gb|ADN55752.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X513]
Length = 249
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 74/203 (36%), Gaps = 8/203 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-- 179
+ LILG + + + + +V+ + F + + + S
Sbjct: 46 LFSFGVLILGGLIVLSVVGTVNGANVFALLSVVTGSIIMFY---QYWKKPIDSYRESFYK 102
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P A+++ + +E G++ + + + G L E L + + A
Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHE---AQVRLDTGSSLKDAL 159
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+++ D + + + I ++L L+ E R + + A+ L L
Sbjct: 160 TYAASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLF 219
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ + + ++++ P +LS+
Sbjct: 220 FPIFLGYFIPILIIFALPFVLSL 242
>gi|37680190|ref|NP_934799.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
gi|37198937|dbj|BAC94770.1| Flp pilus assembly protein TadB [Vibrio vulnificus YJ016]
Length = 294
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 3/187 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ G L + +IL+ + + + Q + PD +D +
Sbjct: 72 VMLTVGLFITLLSQGMAPLTTLILVVAISVMMTVLAFRHFEQLAINEFNTQMPDIIDSME 131
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
V+ G + ++E G + L L L + + + +
Sbjct: 132 RAVKVGAPLHDIFFALSEQYQGSAKRL---FLAMHDRLKLGHSVERVMQFAAQQMPSQEF 188
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R T L G + L+ L R LME+ + + + + ++ P LI
Sbjct: 189 RFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRTSAKVLAILPPALI 248
Query: 312 LVIIGPA 318
V+ G A
Sbjct: 249 GVLYGSA 255
>gi|320156057|ref|YP_004188436.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
gi|319931369|gb|ADV86233.1| flp pilus assembly protein TadB [Vibrio vulnificus MO6-24/O]
Length = 294
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 3/187 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ G L + +IL+ + + + Q + PD +D +
Sbjct: 72 VMLTVGLFITLLSQGMAPLTTLILVVVISVMMTVLAFRHFEQLAINEFNMQMPDIIDSME 131
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
V+ G + ++E G + L L L + + + +
Sbjct: 132 RAVKVGAPLHDIFFALSEQYQGSAKRL---FLAMHDRLKLGHSVERVMQFAAQQMPSQEF 188
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
R T L G + L+ L R LME+ + + + + ++ P LI
Sbjct: 189 RFLTTLLSLQSETGGKLSHMLKQLGQTLRERSLMESRVRTITSESRTSAKVLAILPPALI 248
Query: 312 LVIIGPA 318
V+ G A
Sbjct: 249 GVLYGSA 255
>gi|126466360|ref|YP_001041469.1| type II secretion system protein [Staphylothermus marinus F1]
gi|126015183|gb|ABN70561.1| type II secretion system protein [Staphylothermus marinus F1]
Length = 591
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/250 (18%), Positives = 98/250 (39%), Gaps = 9/250 (3%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + L + + N+ N +R +G + + + + I + + +I +F
Sbjct: 5 DWVYRYFEGLGKYILRMYPNLSNDIRKSGMHLYPEVYASFMAFMSILISGVTIVLIILFA 64
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
K + + ++L+ ++ + + + + R I+ +P L + V SG
Sbjct: 65 VVK-----IYIVLPFLVLVPFLTYILLAYLPALIGSSRAGGIEGEFPYTTAYLSMMVMSG 119
Query: 198 ISIDQALRRV--AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+S A R+ A + +S LS+ +L + L + AF +RT R+
Sbjct: 120 LSPYVAFERITHASKVFTKSAELSQRFILLVRVL--GRDPLTAFSMLAHRTPSPTARDLL 177
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + R G + D L SE L++ + A L L + + L ++ L ++
Sbjct: 178 MGYVTTVRAGGDVADYLNKKARLLFSELLVKMKIIADRLAGLLEAYLALVLLSMISLTVM 237
Query: 316 GPAILSIIDT 325
+S I
Sbjct: 238 YFVTVSFISA 247
>gi|152986618|ref|YP_001350204.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
gi|150961776|gb|ABR83801.1| hypothetical protein PSPA7_4868 [Pseudomonas aeruginosa PA7]
Length = 293
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 5/150 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R + R P LD ++ + +G ++ AL + + PL + L +
Sbjct: 113 RRRLKRMIRQMPRFLDQVVRSLHAGRTLGDALM---QAVEDAEDPLRDIFGLARNHVLLG 169
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + +++ +R + + RYG + D L +V + + A
Sbjct: 170 IHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTTDLLDGIVRLIHEREKLSRQLHAM 229
Query: 293 SLGPKLTVPMIIFFLPVL--ILVIIGPAIL 320
+ +++ ++ L ++ P L
Sbjct: 230 TGETRISAYVLAGVPSALGGYILASNPGYL 259
>gi|296129085|ref|YP_003636335.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296020900|gb|ADG74136.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 286
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 5/212 (2%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+ + + V L+ + + + + G AP
Sbjct: 33 GWSARVHDTLTQAEVTGVTPGGLLAVSGLVGLVVAAVAFLVVPVPAVSLCFGGFAAGAPW 92
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ ++R +S + WPD +D L V +G+S+ +A+ A+ L
Sbjct: 93 ALVQGRARRRLASTRELWPDVVDHLASGVRAGLSLPEAV---AQLGDRGPAELRAPFRAF 149
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
+ + + +R +AL + G +G LR L + R +
Sbjct: 150 AEDYRATGRFTDSLDALKDRLADPVADRIIEALRLTRDVGGTDLGRLLRTLSTFLRDDLR 209
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
E +A M + P ++L ++
Sbjct: 210 TRGELEARQSWTVYAARMAVAA-PWVVLAMLA 240
>gi|167036498|ref|YP_001664076.1| hypothetical protein Teth39_0067 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116990|ref|YP_004187149.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166855332|gb|ABY93740.1| hypothetical protein Teth39_0067 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319930081|gb|ADV80766.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 249
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 74/203 (36%), Gaps = 8/203 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-- 179
+ LILG + + + + +V+ + F + + + S
Sbjct: 46 LFSFGVLILGGLIVLSVVGTVNGANIFALLSVVTGSIIMFY---QYWKKPIDSYRESFYK 102
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P A+++ + +E G++ + + + G L E L + + A
Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHE---AQVRLDTGSSLKDAL 159
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+++ D + + + I ++L L+ E R + + A+ L L
Sbjct: 160 TYAASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLF 219
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ + + ++++ P +LS+
Sbjct: 220 FPIFLGYFIPILIIFALPFVLSL 242
>gi|307265041|ref|ZP_07546602.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306920026|gb|EFN50239.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 301
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/314 (10%), Positives = 94/314 (29%), Gaps = 46/314 (14%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ V+ ++F + + ++ L+ R
Sbjct: 1 MTVSFLFGAAVFMAVVLLYSI-----------------------REEKRLKLKRRLERHL 37
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K+ + L+ + + KL+ +G +++ +
Sbjct: 38 VSPQKNEFSITDLFGLRKFIE--KLDRKLKKSGIKADAEE---------------VFLWF 80
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + + + ++ + + L ++R I+ + D + +L
Sbjct: 81 LLLSVLSSISLSLKGFTALGAALPFMLYYLIDYILDYLGRRRVRKIEEQFKDFVKMLGAY 140
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++ S A + AE+ PL E + + + + A + N + ++
Sbjct: 141 LKMVPSFAGAFIKAAEEAES---PLKEHTDRVVRKFELGEDIETALQELKN-VESTYIKA 196
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++I + R + + + M + A ++ K + + + V+I V
Sbjct: 197 WADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNKIAAMTVQAKSLMVSLAGVMAVMIAV 256
Query: 314 II--GPAILSIIDT 325
+ P + T
Sbjct: 257 TMMSSPDFVKAYST 270
>gi|307325196|ref|ZP_07604399.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306889000|gb|EFN19983.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 299
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/290 (13%), Positives = 83/290 (28%), Gaps = 17/290 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + +V L+ L M ++ D+ +
Sbjct: 1 MITVVLGSVFGAGLVALAYGLRPPRPALADVMAALDATSPKR---------ADAVAPDGE 51
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + L L ++ L G ++ L + L I
Sbjct: 52 TEWATRLGRRAVPLVRALGFPTASLRADLATCG----RDVDKHLAGKATCTATGLATPWI 107
Query: 134 WIFG--YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + + + ++ V F P + + +R+ ++ LDL +
Sbjct: 108 AVALARVGTGADAGWWMPLAGSLVFAGVLFFLPDITVRKAAAERRRQMRHTLTLILDLTV 167
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
I + G + QAL + G + L + + Q+ +
Sbjct: 168 ISLAGGAGVQQALTDAVQAPHGWAASKLRHALRVAQLTR--TSPWQHLGDLGQHLQVSDL 225
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
L + G + SL R RL EA+ A + ++++P
Sbjct: 226 TELAATLSLAGTEGAKVRASLAAKARAMRRRRLSEADGAAQAATEQMSLP 275
>gi|228938212|ref|ZP_04100827.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971090|ref|ZP_04131723.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228788613|gb|EEM36559.1| hypothetical protein bthur0003_8720 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821445|gb|EEM67455.1| hypothetical protein bthur0008_8800 [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 288
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 66 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 117 VLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 174
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 175 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 230
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 231 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 283
>gi|163856390|ref|YP_001630688.1| hypothetical protein Bpet2079 [Bordetella petrii DSM 12804]
gi|163260118|emb|CAP42419.1| putative membrane protein [Bordetella petrii]
Length = 281
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 65/174 (37%), Gaps = 3/174 (1%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG + + G L + L + P ++ L +R + ++ P AL
Sbjct: 57 LGAMLLAGVAGLAAFAASGSAMLGGLAAVLAARLPRHVVARLRGRRLARFEQQLPGALLA 116
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + +G+ + ALR + + PL++E L + E + A R +
Sbjct: 117 LASALRAGVGVSTALRHIVDH---SEPPLAQEFGLMLREQRLGVSFDAALARLSQRVPSE 173
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
AL + G ++ ++L + R ++ + +A + +L ++
Sbjct: 174 ASALVAAALRVATHTGGNLAETLDGIARTLRERLQLQGKVRALTAQGRLQAWIV 227
>gi|150401575|ref|YP_001325341.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
gi|150014278|gb|ABR56729.1| type II secretion system protein [Methanococcus aeolicus Nankai-3]
Length = 295
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 79/206 (38%), Gaps = 8/206 (3%)
Query: 125 IIFLILGIIWI-FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
I I G I I ++ + + ++ V PS+ ++K ++
Sbjct: 31 IGLTIFGSIIIPLLFNHFMHLNIKTTFILFLVYLGVFLSIPSIIYEGKIEK----FEKNI 86
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P AL ++ + ++SG S+ +A+ V G + E M + + + + A
Sbjct: 87 PKALYVMTLSLDSGRSVTEAIEEVIN--AGVNGVDKEFMKILYLIIEKKYSFEDAMTTIT 144
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ R + +I++ + G + +LR L ++ + + + + +I
Sbjct: 145 ENSDSMVFRQIGRLIIENRKQGGELASTLRTLAKTLEDLMNIKQQLLSTTANGLVVGLVI 204
Query: 304 IFFLPVLILVIIGPAILSIIDTMKDH 329
+ + +IG L+++ TM +
Sbjct: 205 LCGVIPATAGLIG-GYLTVLSTMSPN 229
>gi|256824883|ref|YP_003148843.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
gi|256688276|gb|ACV06078.1| Flp pilus assembly protein TadB [Kytococcus sedentarius DSM 20547]
Length = 286
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 10/216 (4%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
++ ++ S ++ + V L+L + +L + G
Sbjct: 26 RARVTRTTWQDRVSDDLAVARWSGVTPGGLVLATAALGVVTFVLTAGLTGVLPVAAAFGL 85
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ P +S ++R+S ++ AWPD +D + V +G+++ +AL A+ L
Sbjct: 86 IASGLPWAVLSGTSRRRRSRLRDAWPDCVDHVASGVRAGMALPEAL---AQLAVRGPEEL 142
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVS 277
+ V+ + R ++L + G +G LR L S
Sbjct: 143 RPAFAGFAHDYRATGRFHVSLDALKERLSDPVADRLVESLRIAREVGGSDLGVVLRTLSS 202
Query: 278 ETRSERLMEAEKKAASLGPK------LTVPMIIFFL 307
R E +E +A L P I+ +
Sbjct: 203 FLREEAHTRSEMEARQSWTVNAARLGLAAPWIVLAM 238
>gi|239817415|ref|YP_002946325.1| type II secretion system protein [Variovorax paradoxus S110]
gi|239803992|gb|ACS21059.1| type II secretion system protein [Variovorax paradoxus S110]
Length = 241
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 7/198 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ I I L V A + + + A + +QK + + P +D
Sbjct: 17 VATIAVIGILVLCLLAGLLGGVIAAVGVLLLLLLASVFAVWLRLQKVRRQLISQLPAYID 76
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + G S A + I PL M + A + + A N ++
Sbjct: 77 AMVRLITIGNSTQAAFQLA---IATTQAPLRGHMERSAALVRAGVDLDRALHQTANNVRV 133
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + L RYG L + + R E E A S +L+ I+ LP
Sbjct: 134 EEMFLLASILGLGVRYGGRSDLLLERVANFMRDREQAEHELVAMSAETRLSA-WILGLLP 192
Query: 309 V---LILVIIGPAILSII 323
+ LV++ P +
Sbjct: 193 LGVGTFLVVVNPDYFLSM 210
>gi|20808465|ref|NP_623636.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
gi|20517083|gb|AAM25240.1| hypothetical protein TTE2066 [Thermoanaerobacter tengcongensis MB4]
Length = 248
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 80/205 (39%), Gaps = 9/205 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+LG I + P ++ V+ +G S + K++ P L
Sbjct: 50 LVLGFSLILLLFSFIFVPVLMKPFLVLALGIPVIMYLSYKDTVSKYKKRLMADNELPAIL 109
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ + + G+ ++ +R + E+ G + +E + + ++ E ++
Sbjct: 110 ETFISGLSVGMPVENIMRYIVENKKGYMKEIIQE---ALHKADAGIPLSLSLEEAAEKSL 166
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK---LTVPMII 304
+ A + LI++ + + L L+ + +R+ +K A + +P++I
Sbjct: 167 NKYFQRAVKILIKTSETSQGLAEQLDELLRDIEEDRIN---EKTAKASVLDNVIAIPVLI 223
Query: 305 FFLPVLILVIIGPAILSIIDTMKDH 329
F LI+ +I P I+S + H
Sbjct: 224 GFFIPLIVFVIFPFIVSFSNIFGTH 248
>gi|241667101|ref|YP_002985185.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862558|gb|ACS60223.1| type II secretion system protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 287
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 3/187 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+IL ++ + +++ V P I +Q+R I+ P A+
Sbjct: 61 MILAYGITAIVVFIVISLIFGPIFGIVIAIPVAIFLPKGMIRYFLQRRWLQIESQLPYAV 120
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V +G + A+ VA+ +P S E E A +
Sbjct: 121 DQIVSAVRTGKPLAIAVNAVADTGQ---MPASREFERIAREQKLGIGLVEALDRHGRNVP 177
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ AL R G I + L + + ++ + +S ++ ++
Sbjct: 178 SLHFKMVDAALGLFARQGGDISEPLTEMSKSFKEIWKLDQKITTSSSQARMNFRVVNGGA 237
Query: 308 PVLILVI 314
++L+I
Sbjct: 238 LFMMLMI 244
>gi|260892678|ref|YP_003238775.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864819|gb|ACX51925.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 297
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 105/312 (33%), Gaps = 16/312 (5%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + V++ + +A L +++ + E LR + + +A RL +
Sbjct: 1 MPVLYTVAVLAFGFASFFGVLCLAHRVSGLEAAFEKGERLRVEDV-----RAALLRLLSG 55
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + ++ D +G S S L + LVV F ++
Sbjct: 56 ALEEVYRRGRRFLPVGFFWDAGRFRVAEDSG--SPLSAEALCALHLVVTAFFGSCALVSW 113
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L +P A +L PSV++ + KR++ + R + + V
Sbjct: 114 LVGSGQLVFPTLALTLASLLA-------PSVFLGHARAKRRARMARETLALAEFTAVGVA 166
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+G++ AL+ A+ G + L + R + +
Sbjct: 167 AGLTPWAALKEAAQGGDGPLYREVKRALEEGEAQARSGPRTAVLGALAEELGVPEFSSFA 226
Query: 256 QALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + Q+ YG ++ V R R + E A K+ VP+ + + ++ +
Sbjct: 227 ELVCQAIEYGAEGFVSAIEDAVRHMREVRRAKLEAAAQKAQSKMLVPL-LVLVGAMMCFL 285
Query: 315 IGPAILSIIDTM 326
+GP +
Sbjct: 286 LGPLFARVGAAF 297
>gi|266621095|ref|ZP_06114030.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867251|gb|EFC99549.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 411
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/183 (19%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 151 GAVILIGYVGFCAP---SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+L + F + N+ ++R+ + + + + ++ + +G++I A R+
Sbjct: 229 VIPVLGLLLAFLWAARVKMNEQNVKKQREQLLLLDYSEIVSKFMVFISAGMTIRTAWERI 288
Query: 208 AEDIG-------GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A ++ P EEM TI++L A+ F R + L Q
Sbjct: 289 AAGYEKTVQTGNRKARPAYEEMCHTISQLKSGMAEGRAYGEFGRRCGLQPYVKLAALLEQ 348
Query: 261 SDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ + G+ ++ +L + + +R A+K G KL +P+ + V++++I+ PA
Sbjct: 349 NRKTGSKNLKSALELEMVSAFEQRKNLAKKLGEEAGTKLLLPLFLML-GVVMIMIVVPAF 407
Query: 320 LSI 322
L+I
Sbjct: 408 LAI 410
>gi|288559781|ref|YP_003423267.1| type II secretion system protein F GspF1 [Methanobrevibacter
ruminantium M1]
gi|288542491|gb|ADC46375.1| type II secretion system protein F GspF1 [Methanobrevibacter
ruminantium M1]
Length = 201
Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 15/173 (8%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
IL P + + SSI + P AL L + +G S+ AL +
Sbjct: 1 MFFILFALFILYLPKI----RHENDYSSISKELPYALRQLSTELRAGKSLFDALDSI--- 53
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ LS E + E+ + + AF N R + ++ S R G+++
Sbjct: 54 VDSDYGVLSREFSRVLEEIKYGETSENAFLNLEKRVNSKALSRVIYEILASLRIGSNLSH 113
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
SL ++ + + M+ ++ + L F + L I+ P I+ +
Sbjct: 114 SLNIIAEDVNFDMRMKLKEYSEKLNA--------FIMIYTFLAILAPVIILTM 158
>gi|297564239|ref|YP_003683212.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296848688|gb|ADH70706.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 236
Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 6/196 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+LG + + VG +++ G S + ++ + P +
Sbjct: 42 LLGPTLAGAFALTVAVALFGAVGGLVVAGVCAALWVRARRSAGSRSQRLPVTADLPVVIG 101
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + +G ++ L V+ G+ L EE+ +L A+ +
Sbjct: 102 LLASGIRAGATVPACLTAVSRATRGR---LGEELAAVAEQLRLGAAPAEAWRRPALPEPL 158
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
V L ++ G + D L + R + LG + P+ + FLP
Sbjct: 159 VPVGR---DLARAADTGAPVADLLDRHAVDLRRTLRARGTARLERLGVLVVAPLGLCFLP 215
Query: 309 VLILVIIGPAILSIID 324
+L+ I P ++
Sbjct: 216 AFVLIGIVPMAAELLS 231
>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
pv. mori str. 301020]
Length = 179
Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
PL + M + + A +F + D L + RYG + + + L+
Sbjct: 2 PLKDGMSRIERNVQLGVSLPDAARDFAELYERDEFHLFALGLRVNHRYGGNASELMENLI 61
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
R + +A + ++T +++ LPV +
Sbjct: 62 KLIRDREQAGRQLRAMTGETRMTA-LVLALLPVGMA 96
>gi|167038601|ref|YP_001666179.1| hypothetical protein Teth39_2222 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320114926|ref|YP_004185085.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166857435|gb|ABY95843.1| hypothetical protein Teth39_2222 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928017|gb|ADV78702.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 241
Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/202 (14%), Positives = 73/202 (36%), Gaps = 8/202 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI-- 179
+ LILG + + + + +V+ + F + + + S
Sbjct: 46 LFSFGVLILGGLIVLSVVGTVNGANIFALLSVVTGSIIMFY---QYWKKPIDSYRESFYK 102
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P A+++ + +E G++ + + + G L E L + + A
Sbjct: 103 EEELPAAIEIFINGLEVGMNKENIISYIVRTREGVVRDLLHE---AQVRLDTGSSLKDAL 159
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+++ D + + + I ++L L+ E R + + A+ L L
Sbjct: 160 TYAASKSLNDHFKRFVKIITGEFASEQDIKENLEELLDEVREINYNKKTESASVLDNSLF 219
Query: 300 VPMIIFFLPVLILVIIGPAILS 321
P+ + + ++++ P +LS
Sbjct: 220 FPIFLGYFIPILIIFALPFVLS 241
>gi|314977797|gb|EFT21891.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
Length = 297
Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 104/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ + V++ L+ +L ++ V+ + + +
Sbjct: 1 MTITALSLLVGAIVTVGLLVIVAAFRPAPGPDLFAALEVVSGRTSSVAENVDQTRIGRIG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + RL+ +I
Sbjct: 61 RSVTRTFHVSVSPAMRAALRLQG-------------------TTPEAFYGRRLICALIGA 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + + L + + + G+ P+ + A
Sbjct: 102 ILPWLLNAVAIAVGANSPNLLIPSALCVALAGAGWMLPAARLKAAAGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + S + +
Sbjct: 162 IDLVVLERLANETSVDALTNAANM---SDSPLFVQIRQVLNRASLENVDPWNGLDRLAED 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + I+
Sbjct: 219 IKLPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I
Sbjct: 278 A-GSVMLILLGAAALTLITA 296
>gi|125973149|ref|YP_001037059.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC
27405]
gi|256003945|ref|ZP_05428931.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM
2360]
gi|281417342|ref|ZP_06248362.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20]
gi|125713374|gb|ABN51866.1| hypothetical protein Cthe_0631 [Clostridium thermocellum ATCC
27405]
gi|255992073|gb|EEU02169.1| hypothetical protein ClothDRAFT_3050 [Clostridium thermocellum DSM
2360]
gi|281408744|gb|EFB39002.1| hypothetical protein Cther_2014 [Clostridium thermocellum JW20]
gi|316940624|gb|ADU74658.1| hypothetical protein Clo1313_1597 [Clostridium thermocellum DSM
1313]
Length = 294
Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/312 (8%), Positives = 101/312 (32%), Gaps = 26/312 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ +I L++ ++ P + + +++
Sbjct: 7 LCALAAIIYLVFTLIYPLFKP----------MTRKRKEHSRDFIKRKRNQKKVEKYLYFK 56
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + + + ++ + + + + +++ I + + +I +
Sbjct: 57 DIVLRRLSNKFFLSDIKRNELNFLIKR--LDLKITPEEIRLKQILYVIGAVGISLIAMNI 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ ++ +G+ P + +++K+ ++I +P ++L
Sbjct: 115 NTLIG--------YGCLIFVVLGWLYPVDELEKMIEKKNNNILADFPSFYNMLYYQYARS 166
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
I+I A V + + + ++ E+ + + + + + A + R + +
Sbjct: 167 INIYLA-DVVKDFLPNANEDMAAELEVFLDNIEYGE--EYALKQLKKRVPLRHIIKFCDI 223
Query: 258 LIQSDRYGTSIGDS--LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ R +I L+ + + R L + + ++ +I+ L + I++
Sbjct: 224 METRLRGYDNISQMTYLKNELYDLRVMSLEDELHRREQKNARMQFVLIV-VLAIYIVIYY 282
Query: 316 GPAILSIIDTMK 327
+ I
Sbjct: 283 YFMFVDAIRMFS 294
>gi|302530824|ref|ZP_07283166.1| predicted protein [Streptomyces sp. AA4]
gi|302439719|gb|EFL11535.1| predicted protein [Streptomyces sp. AA4]
Length = 231
Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 6/186 (3%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
+ L V L G + S + LDLL C+ +
Sbjct: 44 AAVVVGLSTTVLTGIPVGLAAGAGSWWLLRRSRHPKNPDDVSERLRSASTLDLLAACLRA 103
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ + AL VA G + T L+ + A+ R
Sbjct: 104 GMPVPTALAAVA---PGAPPDTENALHATANLLALGSDAAPAWAPLRAR---PGFAELAV 157
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
A ++ R G ++ + L R +EAE++A G L +P+ + FLP + +
Sbjct: 158 AATRTARSGAALASTADDLARRVRDGLGVEAEERAERAGVALAMPVGLCFLPAFFALGVL 217
Query: 317 PAILSI 322
P +L +
Sbjct: 218 PVVLGL 223
>gi|154151944|ref|YP_001405562.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000496|gb|ABS56919.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 450
Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 7/172 (4%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + V++ + P L ++ + + + L L + G+ +A+
Sbjct: 100 APTMGLDEVMVFALIIAILPYSIDITLQKRSTRKKEELYTEFLFKLSELMRGGLDPVKAV 159
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ +A+ L+ + + ++F + + + + D +R T ++Q+
Sbjct: 160 KELAK---TDLGVLTPHIRIASTSMTFGKSFEESMKAMAQSLHSDLIRRYTMLVVQASYS 216
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G S+ D + + RS +E EK+ MI +F +I+ I+
Sbjct: 217 GGSVADLILKASEDMRSIISIEREKEGNLHQ----YVMIFYFAQAIIIFIVY 264
>gi|238922469|ref|YP_002935982.1| hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
gi|238874141|gb|ACR73848.1| Hypothetical protein EUBREC_0043 [Eubacterium rectale ATCC 33656]
Length = 258
Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ I ++ Y F VI V + V++++ + + + L
Sbjct: 25 GIVFIKSMAATVIIAYLFYDSPIVVIAFPAVFAYCAKLCRQEGVRRQKEKLNEEFMNVLK 84
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L + +G S++ A + +++ + E+ ++ + F +R
Sbjct: 85 VLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIREMNRQIKMNQTFEAVLSEFAHR 144
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ + N + + R G D + ++ + + A + K +
Sbjct: 145 SGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQIEVA-VSAKRLEQKTMN 203
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
++P+ +L + + + + +
Sbjct: 204 YIPIFLLAFLKLSSRDYMSALYGN 227
>gi|299069495|emb|CBJ40764.1| Type II secretion system protein [Ralstonia solanacearum CMR15]
Length = 308
Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 68/209 (32%), Gaps = 11/209 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ L R + ++ L + + + + V +L+ F
Sbjct: 69 WHDALRRADLEPGRRLYILLLGPLVALALLAWVMSGLLSAAMVVALYVLVAAFLFW---- 124
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
N ++ + + P LD ++ + G ++ A + + PL + T
Sbjct: 125 ---NRTRRMNERLMQQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLTSTT 178
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A +++ + + L + RYG + + R +
Sbjct: 179 QLQRAGKDLDAAVLAVGQLYRVNELILLSSVLRLALRYGGRADIVMERTAAFMRDREQAQ 238
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
E A S +L+ I+ LPV++ II
Sbjct: 239 KELLALSAETRLSA-WILGLLPVVVGGII 266
>gi|300914022|ref|ZP_07131339.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
gi|300890707|gb|EFK85852.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X561]
Length = 303
Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 67/199 (33%), Gaps = 6/199 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +F L+ F+ + + + + L +++ + + D +
Sbjct: 78 VFLWFILFTIVILVFLSFKGFTLLGFTLPVMLYYLIDYILDYLGRRKIRKTEEQFRDFVK 137
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++ S A + AE+ PL E + + + A + F N +
Sbjct: 138 MLGAYLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVLRRFQLGEDLEEALKEFKN-IES 193
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ ++I + R + + + M A ++ K + ++ +
Sbjct: 194 TYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIAAMTVQAKSLMVSLVGIMA 253
Query: 309 VLIL--VIIGPAILSIIDT 325
+I+ V + P + +
Sbjct: 254 FMIVSTVSVSPDFIRTFSS 272
>gi|271962055|ref|YP_003336251.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
gi|270505230|gb|ACZ83508.1| hypothetical protein Sros_0482 [Streptosporangium roseum DSM 43021]
Length = 193
Score = 63.7 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 6/189 (3%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G L + + V A S ++ + + P A DL++ C
Sbjct: 4 AAIGLMVFLVVGGAPGIVIGVAGSAVALVAVQRRESPRARRERDRVVADLPLAADLMVAC 63
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G I A+ E +GG PL E + +L + A++ +
Sbjct: 64 LRAGQPITGAIDVTVEAVGG---PLGERLAWVSGQLRLGAAPESAWQALA---AEPPLAP 117
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + ++ G + D L L ++R + A +G + P+ + FLP + +
Sbjct: 118 LARMMSRAALSGAPVADVLTRLSDDSRHALRAASAAAARRVGVQAVAPLGLCFLPAFVFL 177
Query: 314 IIGPAILSI 322
I P + +
Sbjct: 178 GIVPVVAGL 186
>gi|17549305|ref|NP_522645.1| pilus assembly transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17431557|emb|CAD18235.1| probable pilus assembly tadb transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 308
Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+++ L + + + + + N ++ + + P LD ++
Sbjct: 87 LLFGPLVAIALLAWVVSSLLSAAMAVALYVLVAAFLFWNRTRRMNERLMQQLPGFLDGVV 146
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ G ++ A + + PL + + A +++ +
Sbjct: 147 RLMSIGSAVPAAFQAAS---ANTEPPLRTCLTSITQLQRAGKDLDAAVLAVGQLYRVNEL 203
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ L + RYG + + R + + E A S +++ I+ LPV++
Sbjct: 204 ILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQKELLALSAETRMSA-WILGLLPVVV 262
Query: 312 LVII 315
II
Sbjct: 263 GGII 266
>gi|188592035|ref|YP_001796633.1| type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
gi|170938409|emb|CAP63396.1| Type II secretion system protein [Cupriavidus taiwanensis LMG
19424]
Length = 308
Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 61/197 (30%), Gaps = 7/197 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ L + + V + + V++ + P LD
Sbjct: 85 ALLWLSPLVLCTLAGAVAGQWLGAVSALVVALAVTACAAWHRVRRLHKKLLSQLPGFLDG 144
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G S+ A + I PL + ++ + A +++
Sbjct: 145 VVRLMTIGSSVPAAFQ---NSIANTEAPLRQCLVQAVHLQRAGKELDQAVLQVGRAYKVE 201
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ L S RYG + + R + E A S +L+ ++ LP+
Sbjct: 202 ELVLVASVLRLSVRYGGRADVVMERTATFMRDREQAQRELMALSAETRLSA-WVLGLLPL 260
Query: 310 LI---LVIIGPAILSII 323
++ L + + ++
Sbjct: 261 VVAGGLFTLNAGYILMM 277
>gi|154250529|ref|YP_001411353.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
gi|154154479|gb|ABS61696.1| type II secretion system protein [Parvibaculum lavamentivorans
DS-1]
Length = 291
Score = 63.3 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 4/186 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L I IF + ++ + I +KR +++ A D
Sbjct: 67 LTAILIFVLCVWSSLVILSGLIVATVVVLSSLLVVAAIIDYRARKRMNALSDAMLGYFDR 126
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + G S+ AL R + + E TI ++ + + T +
Sbjct: 127 VRQLLVVGNSLSVALARATQ---SSPPIVIEFFSPTIRRIANGAGVAESVNQLADETDLY 183
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+R A+ + R+G S+ L L+ R + E + ++ + + ++ LP+
Sbjct: 184 ELRLFGTAIETNLRFGGSLTSILSNLIDNIRRRAAVMREVRGSTSQIRASA-WVLGLLPM 242
Query: 310 LILVII 315
++ ++
Sbjct: 243 IVASVV 248
>gi|284989267|ref|YP_003407821.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284062512|gb|ADB73450.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 303
Score = 63.3 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/307 (13%), Positives = 91/307 (29%), Gaps = 10/307 (3%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+ F + + L L +A L + + + + R +
Sbjct: 6 ALLIGFGALTGLGAFLLLRAALVVDQPHLADALARLDGRATVPVAPSAQTGDQWARAAGR 65
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ + L L ++ ++ + +
Sbjct: 66 AGTWAASQLPASALRAPAQALALI------GWTPEGYAARKIGSAAFGALFVPLLTTALG 119
Query: 140 KLL-EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
P + V + + V F V + + + + ++RA LDL+ + ++
Sbjct: 120 AAGVRLPVVVPVAGSLALAGVLFLVVDVVVRDQAAEARGQMRRALCSYLDLVSLRRDASE 179
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
AL R A G +A T + + +
Sbjct: 180 GPTIALERAAALGDGW--VFGRVADALVAARLAGEPPWDGLRRLAADTGVGELADVADIA 237
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ + G SI +LR R + L E E A + KLT P+ + + +L+ + PA
Sbjct: 238 AVAAQDGASIAPTLRARAQSLRVQLLAEEEAAANTASEKLTAPVALLSI-AFLLLFLYPA 296
Query: 319 ILSIIDT 325
+ ++ +
Sbjct: 297 LARLMAS 303
>gi|291526237|emb|CBK91824.1| hypothetical protein EUR_28790 [Eubacterium rectale DSM 17629]
Length = 247
Score = 63.3 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ I ++ Y F VI V + V++++ + + + L
Sbjct: 14 GIVFIKSMAATVIIAYLFYDSPIVVIAFPAVFAYCAKLCRQEGVRRQKEKLNEEFMNVLK 73
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L + +G S++ A + +++ + E+ ++ + F +R
Sbjct: 74 VLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQIKMNQTFEAVLSEFAHR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ + N + + R G D + ++ + + A + K +
Sbjct: 134 SGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQIEVA-VSAKRLEQKTMN 192
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
++P+ +L + + + + +
Sbjct: 193 YIPIFLLAFLKLSSRDYMSALYGN 216
>gi|254478343|ref|ZP_05091722.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
gi|214035701|gb|EEB76396.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
Length = 301
Score = 63.3 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 6/199 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+F L + + + + + + L ++R + + D +
Sbjct: 76 AFLWFVLFSIVSALFLSLKGFALLGLSLPVMLYYLGDYVLEYLGRRRIRKTEEQFRDFVK 135
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++ S A + AE+ PL E + + + + A + N +
Sbjct: 136 MLGAYLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVVRKFELGEDLEEALKELKN-VES 191
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ ++I + R + + + M + ++ K + + +
Sbjct: 192 TYIKAWADSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIASMTVQAKSLMVSLAGVMI 251
Query: 309 VLIL--VIIGPAILSIIDT 325
V++ V+ P L T
Sbjct: 252 VMMAATVMSSPDFLRTYST 270
>gi|326792821|ref|YP_004310642.1| hypothetical protein Clole_3764 [Clostridium lentocellum DSM 5427]
gi|326543585|gb|ADZ85444.1| hypothetical protein Clole_3764 [Clostridium lentocellum DSM 5427]
Length = 293
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/284 (10%), Positives = 102/284 (35%), Gaps = 18/284 (6%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ V+ + + + L+K+ +++++ + + ++ + L + + + L
Sbjct: 26 RPVSNKHKKRTRSHQKQLKKEKQAAKMKAIKRRIGKKYI--VYLLSEAERKRLKKMLER- 82
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
+ + + + + + I I+ F + +L Y A +++ +G+ P
Sbjct: 83 -LDKDMTPEEVRLNQFLYA-GMAIAFSIFAFKVNTMLGY-------ACLILVVLGWLYPV 133
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ ++ + I +P ++ ++I A + + + ++ ++EE+
Sbjct: 134 DELEKTIELKNKYIANDFPAFYSMVYYQYSKTVNIFFA-DVIRDYLPNANIYMAEELGFM 192
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS--LRVLVSETRSER 283
+ + F + R + + + + ++ L+ + E R
Sbjct: 193 LDNIDFGEEF--VLKQLKKRVPLHYIIKFCDIMETRLKGYDNVSQMAYLKNELDEFRVRE 250
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L +K K+ + +II + + + I+ + +
Sbjct: 251 LENELEKREKSNVKIQLVLIIVLGIYIFVYYLF-TIMESMTMFQ 293
>gi|284164235|ref|YP_003402514.1| type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284013890|gb|ADB59841.1| Type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 697
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 71/208 (34%), Gaps = 6/208 (2%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKL--LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+++ + F + + + D L F + + +GF + + R+
Sbjct: 93 IQVDEILGFPVSSDLVLQIIDTLRIPALVFFTGLVFGSIGFAIGFGSLVAIPYSRASTRR 152
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNR 235
I D++ + G++ + + +A+ +++E + E + +
Sbjct: 153 RQINMLLTDSVSFMYALSVGGLNQLEIIEAMAQA-DDTYGEVAKEFQSIVKETEYFDIDY 211
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ A T D + ++ G + L + E E +L
Sbjct: 212 RTAIRKQALETPSDELSQFLTDMLSIVNSGGDMESFLEDKKEKHMRTAKQEQELTLETLE 271
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSII 323
+ M + P+L+++I+ ++ +I
Sbjct: 272 LFGEMYMTLSLFPLLLIIIMV--VMQMI 297
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 77/202 (38%), Gaps = 9/202 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC---APSVWISNLV 172
+ V + ++ + + + V + YV P
Sbjct: 401 FTLALTVPASLVIVTTAMMNGSAPTSWDGLLENAVWGTFIYVYVPLYVIAIPLSVFREWN 460
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ ++S+ + L L ++G+++ ++L+ V+ S L+ E + ++++
Sbjct: 461 VRHRNSVVSQLSEDLRKLSSSNDTGLTLLESLKAVS---DTTSGKLAREFEMMHTKVNYG 517
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A F N+ + + T+ + ++ I D LR + + +E E+K+
Sbjct: 518 TSLKQALIEFNNKYHIPRLARTTRLITEAQEASNQISDVLRTAARASENHDDIERERKSR 577
Query: 293 SLGPKLTVPMIIFFLPVLILVI 314
++ V +II ++ VI
Sbjct: 578 ---TRMQVVIIIMTFMTVLAVI 596
>gi|297526958|ref|YP_003668982.1| Type II secretion system F domain protein [Staphylothermus
hellenicus DSM 12710]
gi|297255874|gb|ADI32083.1| Type II secretion system F domain protein [Staphylothermus
hellenicus DSM 12710]
Length = 591
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 9/241 (3%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + L + + N+ + +R +G + + + +I + ++ I
Sbjct: 5 DWVYRYFEGLGKYILRMYPNLSSDIRRSGMHLYPEVYASFMA-FMSILISGVTVVLTILF 63
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ V L P++ R I+ +P L + V SG
Sbjct: 64 AAMKMYIIIPFLVPIPFLAYIFLAYLPALI----GSSRAGGIEGEFPYTTAYLSMMVMSG 119
Query: 198 ISIDQALRRV--AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+S A R+ A + ++ LS+ +L + L + AF RT R+
Sbjct: 120 LSPYVAFERITHASKVFTKTAELSQRFILLVRVL--GRDPLTAFSMLAQRTPSPTARDLL 177
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + R G + D L SE ++ + A L L + + L ++ L ++
Sbjct: 178 MGYVTTVRAGGDVADYLNKKARLLFSELIVRMKIIADRLAGLLEAYLALVLLSLISLAVM 237
Query: 316 G 316
Sbjct: 238 Y 238
>gi|198284410|ref|YP_002220731.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218666085|ref|YP_002427078.1| tight adherence protein TadB, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248931|gb|ACH84524.1| type II secretion system protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218518298|gb|ACK78884.1| tight adherence protein TadB, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 313
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 53/311 (17%), Positives = 89/311 (28%), Gaps = 31/311 (9%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A+ VS L+ L + E ++ + +SA L
Sbjct: 1 MMALGLIVSALLLLGIAAGVWLSFRQREAFPDALRERLRAFDAHTGKAGDTESAQDDLLD 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
++ K LR AG R + L
Sbjct: 61 HAARY----------KKESFLLQAEEWLRRAGLRPKSYLPK----------------AAI 94
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ LL A+ I A I + R+S+ A P LD ++
Sbjct: 95 VGLLITLLLALLVSDWLALAFILIFYPLALWGHIRYRIGLRRSAAILALPGFLDAVVRAS 154
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G S+ AL + P+ E + A R QM +
Sbjct: 155 RVGASLPAALLSATK---DAHGPVREVFNQIMRRQQSGTPIDQAMLTVGKRYQMQELAII 211
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP--VLIL 312
L + RYG L + R + +AE A S +L ++ +P L +
Sbjct: 212 ATVLRLNMRYGGRTDVVLERIADWLRGRVMAQAEFNALSAETRLGALILSLMIPGLALYI 271
Query: 313 VIIGPAILSII 323
V++ + L +
Sbjct: 272 VLMNHSYLQGM 282
>gi|229142568|ref|ZP_04271049.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26]
gi|228640862|gb|EEK97212.1| hypothetical protein bcere0013_56240 [Bacillus cereus BDRD-ST26]
Length = 240
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 18 KKELIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 68
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 69 VLISPLLYFYPDYLLKRRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 126
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 127 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 182
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++I P ++ I M+
Sbjct: 183 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 235
>gi|88602462|ref|YP_502640.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88187924|gb|ABD40921.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 641
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 112/316 (35%), Gaps = 20/316 (6%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDS 67
+ ++ + ++ + A+ I + + ++ V + L + + +
Sbjct: 272 MMGSSAILELSLIGYAVLPIGAAIFILMIDTISIKDENVVRYVSAKWLNQYSDVRISEGG 331
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
L ++ +K+ + + GF L+ + + + +
Sbjct: 332 NEEHLFAALAR-----FEKIKPLKRWLANPVQ------GFVQHPELSFYFSIPIALAYVI 380
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I I + + + Y + A+++ P ++ S++ PD L
Sbjct: 381 YIFLTIPVGTLEDNINYIDDQLMIALLIT-----LIPFAIFYTRWNQKIRSLESMIPDFL 435
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D + E GI++ Q++ +A L E+ ++ + N A F +R +
Sbjct: 436 DRMAGINEVGITLTQSIAVIAR---ANMGVLGYEISRIHRDIEWGANFSDALIRFEHRVR 492
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + ++ +SI LR+ ++ R + + + + + + + FF+
Sbjct: 493 TALIARTVTLITRAATMSSSISSLLRIAANDARMSENLRRD-RFSEMFIYTAIVYLSFFV 551
Query: 308 PVLILVIIGPAILSII 323
+ ++ +I L+++
Sbjct: 552 FIFVIGVITTQFLTVL 567
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/189 (19%), Positives = 78/189 (41%), Gaps = 3/189 (1%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ L V ++ ++G+ A +V S + R++ I P+A+ + + G
Sbjct: 89 LPIIIIVQILLGVILFLIGSFIGYWAYTVLPSLTKKSRETKITIGLPNAVSYMYAMRKGG 148
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQ 256
I LR ++E + +S E + + F + A ++ T +R+ Q
Sbjct: 149 AEIITILRSLSE-MSAIYGEVSLEFRQAVRDADFFGYDIINALKHVSETTPSRKLRDFLQ 207
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
LI + G ++ L+ V + E E ++ LG + + IF L L++I
Sbjct: 208 DLISTVESGGNLAQFLQDRVFILQEEAKFEQKQFLQFLGLVAEIYVTIFIAGPLFLIVIL 267
Query: 317 PAILSIIDT 325
++ ++ +
Sbjct: 268 -VVMGMMGS 275
>gi|320116991|ref|YP_004187150.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|319930082|gb|ADV80767.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 304
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 67/199 (33%), Gaps = 6/199 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +F L+ F+ + + + + L +++ + + D +
Sbjct: 79 VFLWFILFTIVILVFLSFKGFTLLGFTLPVMLYYLIDYILDYLGRRKIRKTEEQFRDFVK 138
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++ S A + AE+ PL E + + + A + F N +
Sbjct: 139 MLGAYLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVLRRFQLGEDLEEALKEFKN-IES 194
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ ++I + R + + + M A ++ K + ++ +
Sbjct: 195 TYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIAAMTVQAKSLMVSLVGIMA 254
Query: 309 VLIL--VIIGPAILSIIDT 325
+I+ V + P + +
Sbjct: 255 FMIVSTVSVSPDFIRTFSS 273
>gi|291526747|emb|CBK92333.1| hypothetical protein ERE_01990 [Eubacterium rectale M104/1]
Length = 247
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ I ++ Y F VI V + V++++ + + + L
Sbjct: 14 GIVFIKSMAATVIIAYLFYDSPIVVIAFPAVFAYCAKLCRQEGVRRQKEKLNEEFMNVLK 73
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L + +G S++ A + +++ + E+ ++ + F +R
Sbjct: 74 VLSSNMLAGYSVENAWQEAEKEMELMYGNDSLMLSEIQEMNRQIKMNQTFEAVLSEFAHR 133
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ + N + + R G D + ++ + + A + K +
Sbjct: 134 SGLEDIVNFSDIFSFAKRSGGRFVDIIESTTYRMWTKYDTNRQIEVA-VSAKRLEQKTMN 192
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
++P+ +L + + + + +
Sbjct: 193 YIPIFLLAFLKLSSRDYMSALYGN 216
>gi|218290609|ref|ZP_03494711.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239393|gb|EED06590.1| hypothetical protein AaLAA1DRAFT_2297 [Alicyclobacillus
acidocaldarius LAA1]
Length = 294
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 94/283 (33%), Gaps = 21/283 (7%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
+ ++ + KRM V + ++Q + S + R++ L +
Sbjct: 1 MLYVLLPLLFVWAGWPIVKRMDPVVGDTWYRVRRQYRLTEGKSTAERIKRLVYGYLEAVI 60
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L +G + +L+++ + +I + L + +
Sbjct: 61 ------PASWLAPFDRILVLSGQAGKRRALDILLIQAGMLVIVIFLAV-----------W 103
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++L G++ P +Q R+ + + I +++AL
Sbjct: 104 AKHTPTWFILLYGFLVMVIPWRRWYRRIQTRRRDAAWQVRQLKRRFVSLLRRRIPLEEAL 163
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++A D Q + + E+ A + ++ + QA+ ++
Sbjct: 164 WQIARDAAAQRTDFGRRFVARMQEVRV-RALGDALHDLAEEFRVPELTRFVQAIRHAEAN 222
Query: 265 G-TSIGDSLRVLVSE--TRSERLMEAEKKAASLGPKLTVPMII 304
S+ D L + + + + L+EAEK A L ++ ++
Sbjct: 223 SLGSLADILETQIRDESAQLDELVEAEKNAMQLKLRMMSVVMF 265
>gi|296130403|ref|YP_003637653.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296022218|gb|ADG75454.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 306
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 3/188 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ I G L +L ++S Q+R + P+
Sbjct: 79 LAVSLIAVGGGVAVAWLLAVGLAPVFGLLGVVAVVVGLRFYLSRAQQRRNEAFIGQMPEL 138
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LL +G+SI +A P EM + + F + A R
Sbjct: 139 ARLLSNATSAGLSIA---SALALAANELDAPAGPEMARVASRMRFGEDLDTAIGELTARL 195
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V L+ S R G S+ +LR + + + E + T ++I
Sbjct: 196 PSREVAVLASTLLVSARSGGSLVTALRDIADTLEERKEIRREVRTVLAQSTSTGYLVIGM 255
Query: 307 LPVLILVI 314
L+ ++
Sbjct: 256 GFALLFLL 263
>gi|218290591|ref|ZP_03494693.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239375|gb|EED06572.1| hypothetical protein AaLAA1DRAFT_2279 [Alicyclobacillus
acidocaldarius LAA1]
Length = 268
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 83/245 (33%), Gaps = 12/245 (4%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
T L + ++ + R G S L + +L +
Sbjct: 18 LTPWVNRLETWWRRRPFLEPKFQGRLRQWERKVGDWLRRSQVKLTARQY-------VLFL 70
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L+ + + +++G+ +V+ ++ + ++ L++
Sbjct: 71 FFAVVLLPLMIWGGMHSLTLGVIVGWSMAVYMAVYPWQKRKRFEDDLRFGLRRVKMLMVS 130
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
E GI+ + L + + L + + + A T + +R
Sbjct: 131 LYERGIAPEDMLPLL---VSATDGALRQLLERAYQRMQTTDTLADALTWMAQETGLAEMR 187
Query: 253 NATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-LPVL 310
IQ+ RY GTS+ L+ + + R++ L EK+A + + I F LP +
Sbjct: 188 QLASVWIQAGRYEGTSLETQLQQMAVDERAQFLFNLEKRAERKKMSVLIEAIAFIALPTI 247
Query: 311 ILVII 315
LV I
Sbjct: 248 FLVGI 252
>gi|290559841|gb|EFD93164.1| type II secretion system protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 356
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 71/205 (34%), Gaps = 4/205 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ I+ L++ + +GAV I + G ++ + + I+
Sbjct: 54 IGSIIMLLLVAAVIGGILTFHFLNSALYGLGAVAAILFGGIFLSEALVAMIADSVSTKIE 113
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ PD L L+ + +G+ + + + + L+ + E A
Sbjct: 114 KVLPDMLLLMAANLRAGMIPENSFI---SSMKPEFGKLNNLLNKAAIETQAGKTFPEALL 170
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ T + +++ + + +S R G + L L S + ++ +A
Sbjct: 171 EMNDLTSSEFFKDSVRIISESIRSGAELHLILENLASNLLQNESIRSDMRAQVKS-YSLF 229
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
I L +L + ++ I+D+
Sbjct: 230 IFIAATLAGPLLYGVSSFLIGIMDS 254
>gi|160931311|ref|ZP_02078711.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753]
gi|156869695|gb|EDO63067.1| hypothetical protein CLOLEP_00148 [Clostridium leptum DSM 753]
Length = 297
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 102/320 (31%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V + + +
Sbjct: 1 MTTTALSLLAGAIVTVGLLVIVAAFRPAPGPDLVAALEVVLGRTSSVAENVDQTRIGRIG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + RL+ +I
Sbjct: 61 RSVTRTFHVSVSPAMRAALRLQG-------------------TTPEAFYGRRLICALIGA 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + + L + + + G+ P+ + A
Sbjct: 102 ILPWLLNAVAIAVGANSPNLLIPSALCVALAGAGWMLPAARLKAAAGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + S + +
Sbjct: 162 IDLVVLERLANETSVDALTNAANM---SDAPLFVQIRQVLNRASLENVDPWNGLDRLAED 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + I+
Sbjct: 219 IKLPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I
Sbjct: 278 A-GSVMLILLGAAALTLITA 296
>gi|256810975|ref|YP_003128344.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256794175|gb|ACV24844.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 299
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 81/202 (40%), Gaps = 6/202 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I F+++ + L + V V L PS+ + +++ P
Sbjct: 33 IFFILVVTVLSIIVSLYLNMTLKSTVILVALYVGAALSLPSMMYEQKI----ETLENNIP 88
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
AL ++++ +ESG S+++AL V + + + +++ I + + A
Sbjct: 89 QALYIMILSLESGRSLNEALEEVVKSNIKEVSDIFRKVIYLIEHQKI--SFEEAITVVST 146
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + +I++ +YG + DSLR+L + + + + + +I+
Sbjct: 147 LYGSRVLMMLARIMIENRKYGGDLSDSLRILAKTLEDFKSYKRQLLSVTASGLAVGFIIL 206
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
+ + ++G +L+I + +
Sbjct: 207 CGVIPAVAGLLGAYLLTISNML 228
>gi|77454610|ref|YP_345478.1| hypothetical protein pREL1_0043 [Rhodococcus erythropolis PR4]
gi|77019610|dbj|BAE45986.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
Length = 299
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 4/208 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L +LV L++ I + + + F P + I
Sbjct: 90 PAHVLGEKLVAAFFGLLIFPILNLVLTAFGLGLAWSMPAILSLATAVFLFMIPDIDIRRR 149
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ +A +DL+ +C GI Q+L A+ +G V L + L A
Sbjct: 150 AAAARAEFAQALSSYIDLVALCRRGGIGSTQSLEIAAQ-VGDSWVFLRLDEELYEAG-RS 207
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + + + + + + G S+ SLR + RS + + A
Sbjct: 208 GEAPWSALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAA 267
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAI 319
KL +P+ + + +++ PA+
Sbjct: 268 VEATEKLAMPL-AGLAGLFMALLLIPAV 294
>gi|293606487|ref|ZP_06688845.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
gi|292815110|gb|EFF74233.1| type II secretion system protein [Achromobacter piechaudii ATCC
43553]
Length = 307
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 8/251 (3%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ + S + R S L N +K+ + +GF S L +L V +
Sbjct: 23 RHANSGQRRAASSAFLDNQLKRGRETPEEAPFAEGGRAMRSGFSSWDRLLLLAGVHQSMG 82
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L V + +++ + + + KR+ + P
Sbjct: 83 FYLRTAVPVIAGAVLAWLFLGPLSGVVSFLMLAVLMYFL----LWLRADKRRRRMIGQLP 138
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
LD ++ + G S+ PL E + + A
Sbjct: 139 AFLDNIVRLITIGNSMG---AAFQTAAATTDEPLREVVETAASLSRSAKELDAALVQVSR 195
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + + + R+G L + + R E A+S +L+ I+
Sbjct: 196 MYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVAQARNELTASSAEVRLSA-WIL 254
Query: 305 FFLPVLILVII 315
LPV I I
Sbjct: 255 ALLPVGIAGFI 265
>gi|238917898|ref|YP_002931415.1| hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
gi|238873258|gb|ACR72968.1| Hypothetical protein EUBELI_01985 [Eubacterium eligens ATCC 27750]
Length = 235
Score = 62.9 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/184 (12%), Positives = 68/184 (36%), Gaps = 18/184 (9%)
Query: 149 RVGAVILIGYVGF--------CAPSVWISNLVQKR------QSSIKRAWPDALDLLLICV 194
VG +I+ Y+ + P V + +R + + + + D + + +
Sbjct: 10 GVGVIIIAAYIFYENIFMSVLLIPYVAVHIKESRRIAEAKKKRILTKQFKDGIMAVSFAL 69
Query: 195 ESGISIDQALRRVAEDI---GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
G SI+ A + +++ G + + + ++ N + +F +++ +
Sbjct: 70 NVGYSIENAFSQAIDELILLYGSEADIVMKFKNIVVRINQNENLEDILNDFAKECKIEDI 129
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + R G + +R + + + E + G ++ ++ +P LI
Sbjct: 130 MYFAEVFRYAKRSGGDLISIIRNTADIIQQKTEVATEVETIVSGKRM-EQKVMSAIPALI 188
Query: 312 LVII 315
++ +
Sbjct: 189 ILYL 192
>gi|55378047|ref|YP_135897.1| hypothetical protein rrnAC1249 [Haloarcula marismortui ATCC 43049]
gi|55230772|gb|AAV46191.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 678
Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 83/207 (40%), Gaps = 7/207 (3%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA---PSVWISNLVQKRQSSIKRA 182
I ++ I I L+ + V + YV P + Q+ + +I
Sbjct: 404 ILAVVAAIVIGWAPLSLDGMIAVPVRSTFFWVYVPMYLNFIPLMIFYEWNQRSRKAIIGK 463
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ L L ++G+++ ++++ V+E S LS+E A++++ + + A F
Sbjct: 464 LSENLRKLASANDTGMTLLESVKVVSE---TSSGKLSDEFETIHAKVNYGTSLKDALREF 520
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N+ + + + + ++ + I D L + ++ +E E+K+ + + + M
Sbjct: 521 NNKYNVPRLARTVKLIAEAQEASSQIQDVLSTAAQASENQDDIERERKSRTRMQTVIILM 580
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKDH 329
L ++ ++ L ++ +
Sbjct: 581 TYLTLLGVMALLKT-QFLDVMSGLATQ 606
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 36/233 (15%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
++ NKL A R ++ + L L V +I + + LL A L
Sbjct: 37 SSVENKLAEA--RMADNVEMFLARALAVGVIAGLALWLVGTFLGYLLVQLLFASGEAPTL 94
Query: 156 IGY----------VGFCAPSVWI----------------------SNLVQKRQSSIKRAW 183
IG P + I R+ I
Sbjct: 95 IGIPVSESVSEILAVLKLPFLVIVTGFVFGAIGFGIGFGSLVSIPYFRSSAREREINVLL 154
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENF 242
D++ + G++ + L+ + + +++E + E + + + A N
Sbjct: 155 SDSISFMYALSVGGLNQLEILQSMGKA-EDTYGEVAKEFQSIVLETEYFDTDYRTAVRNQ 213
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+T D + ++ G + L + E EK +L
Sbjct: 214 ALQTPSDELSQFLTDMLSIINSGGDMTSFLEDQKEKHMRTARQEQEKMLETLE 266
>gi|229164942|ref|ZP_04292757.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803]
gi|228618526|gb|EEK75537.1| hypothetical protein bcere0009_56150 [Bacillus cereus R309803]
Length = 276
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 54 KKELIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 104
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 105 VLISPLLYFYPDYLLKIRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 162
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 163 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 218
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++ P ++ I M+
Sbjct: 219 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVALIGCMLTSPMVILIQSLMQ 271
>gi|257388194|ref|YP_003177967.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257170501|gb|ACV48260.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 679
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 96/236 (40%), Gaps = 10/236 (4%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+ L+ +L V + V I+ L+L +++ L + +G +
Sbjct: 377 EFMQVLKRPDLFFRDHPLFVLGVTVPVTIVALLLVVVFDLAPMSLDGMIARPVLGTFFWV 436
Query: 157 GYVGF--CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+ P + + +I + + L L ++G+++ ++++ V+ GG+
Sbjct: 437 YVPLYINLLPLAIFYEWNVRSRKTIIGSLSENLRKLASANDTGMTLLESVQVVSTTSGGK 496
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
LSEE + A++++ + + A F N+ + + + + ++ + I + L
Sbjct: 497 ---LSEEFEIMHAKVNYGTSLKDALREFNNKYHVPRLARTVKLISEAQEASSQIQNVLST 553
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV--IIGPAILSIIDTMKD 328
+ ++ ++ E+ A ++ V +I+ L+ V ++ L ++ + +
Sbjct: 554 AAQASENQDDIDRERIAR---TRMQVVIILMTYLTLLGVMALLKTQFLDVMAGLSE 606
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 31/270 (11%), Positives = 70/270 (25%), Gaps = 38/270 (14%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
SL + + L + N+ KL A R ++ + L
Sbjct: 1 MSLDTRGQRQLSGGALGDTFYPLFQWLFNEDGDFVRNVEKKLAQA--RMADNVEMFLARA 58
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA------------VILIGYVGFCAPSVWI 168
L + +I + + L GA + P++ +
Sbjct: 59 LAIGVISGLALWLVGTLIGYLGVTFLLGGTGAEAPTFIGIPLPEGVSAALDVIKIPALIL 118
Query: 169 ----------------------SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
R+ + D++ + G++ + L+
Sbjct: 119 VTGLVFGVIGFGIGFGSLVSIPYFRANAREREVNVLLSDSISFMYALSVGGLNQLEILQA 178
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+A+ ++E + E + + + A N T D + ++ G
Sbjct: 179 MAKA-DDTYGECAKEFQSIVLETEYFDTDYRTAIRNQALETPSDELSQFLTDMLSIINSG 237
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ L + E +K +L
Sbjct: 238 GDMTSFLEDQKDKHMRTAKQEQQKMLDTLE 267
>gi|327400021|ref|YP_004340860.1| Type II secretion system F domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327315529|gb|AEA46145.1| Type II secretion system F domain protein [Archaeoglobus veneficus
SNP6]
Length = 627
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/321 (14%), Positives = 99/321 (30%), Gaps = 35/321 (10%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+L + + + + I+ + RE K +++
Sbjct: 274 TTMHLMQLLIYLYMPIGGLAFIWLLSSMM----------------REQEIKWTGERIRRS 317
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPII 126
R+ K + L + V I + G
Sbjct: 318 RLIPRVTKNGRKPGFTYPSPLKRYYLRVSRAIKMLIGDLGIFIYRPEYSFYFT------- 370
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
I G++ F Y E F + + P + + +R I+ PD
Sbjct: 371 LPIFGLMLPFIYTWEPETIFVTFLLVTV--------TPYAILVEIRNRRVRKIEEHIPDF 422
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L L ESG++I A+R ++ L+ E++ +L + A + F R
Sbjct: 423 LKQLASLNESGLNIVSAIRILST---SNLGVLTSEIIKIRKDLEWGMLLSDALKRFERRI 479
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V T L+++ +I D+L ++ + ++ + + + V + F
Sbjct: 480 GSMTVTKVTSILLRAMEAAGTIKDALFTAATDAQLYLELKKRVR-NEMFVYIVVIYMTFG 538
Query: 307 LPVLILVIIGPAILSIIDTMK 327
+ + + ++ + I M
Sbjct: 539 VFLFTIFVLSNNFMQIFSKMS 559
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/218 (13%), Positives = 74/218 (33%), Gaps = 7/218 (3%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+L + + ++ L I Y+ P ++ S+
Sbjct: 66 PLLLAPFYFAMGYAIGVPISLYFGFEGLNWIIAALLTAVLTIATRYLILVYPKLYASH-- 123
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF- 231
R+ I+ +P ++++L GIS+ + R +AE++ + + +E + + +
Sbjct: 124 --RRKQIEVVFPHVVNMMLGMSRGGISVLEMCRVIAEEV-SVTGEVGKEFAVIVNGVEMF 180
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A + + T + + + + L ER +
Sbjct: 181 HKDLISAMKYVASTTPSQRFADFLDDFVSVIEGSGRLSEFLDFKSKHLMDEREKYQDLFL 240
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
SLG V + + L ++II ++ ++ + H
Sbjct: 241 NSLGILAEVYVAALVVAPLFMLIIF-VVMGMLGSTTMH 277
>gi|237798378|ref|ZP_04586839.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331021230|gb|EGI01287.1| type II secretion system protein, F domain [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 294
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 72/200 (36%), Gaps = 10/200 (5%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ ++ + G ++ +G +++S + R + P
Sbjct: 71 MGLALTLYALLILIGYAMADGIGAGCALVGVPLGL---RLFVSWRSRVRVRRMIEQLPQL 127
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD + ++SG ++ A+ I + PL E M + + A +F
Sbjct: 128 LDHSVRSLKSGRTLADAVLFG---ITAANQPLKEGMSRIERNVQLGVSLPDAARDFAELY 184
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ D L + RYG + + + L+ R + +A + ++T +++
Sbjct: 185 ESDEFHLFALGLRVNHRYGGNASELMENLIRLIRDREQASRQLRAMTGETRMTA-LVLGL 243
Query: 307 LPVLIL---VIIGPAILSII 323
LPV + + + PA L +
Sbjct: 244 LPVGMAGYFMAVNPAYLMHM 263
>gi|167036497|ref|YP_001664075.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167038602|ref|YP_001666180.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039381|ref|YP_001662366.1| type II secretion system protein [Thermoanaerobacter sp. X514]
gi|307725293|ref|YP_003905044.1| type II secretion system F domain-containing protein
[Thermoanaerobacter sp. X513]
gi|320114925|ref|YP_004185084.1| type II secretion system F domain-containing protein
[Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166853621|gb|ABY92030.1| type II secretion system protein [Thermoanaerobacter sp. X514]
gi|166855331|gb|ABY93739.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|166857436|gb|ABY95844.1| type II secretion system protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|307582354|gb|ADN55753.1| Type II secretion system F domain protein [Thermoanaerobacter sp.
X513]
gi|319928016|gb|ADV78701.1| Type II secretion system F domain protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 301
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 67/199 (33%), Gaps = 6/199 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ +F L+ F+ + + + + L +++ + + D +
Sbjct: 76 VFLWFILFTIVILVFLSFKGFTLLGFTLPVMLYYLIDYILDYLGRRKIRKTEEQFRDFVK 135
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+L ++ S A + AE+ PL E + + + A + F N +
Sbjct: 136 MLGAYLKMVPSFAGAFIKAAEEAEN---PLKEHTDRVLRRFQLGEDLEEALKEFKN-IES 191
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
++ ++I + R + + + M A ++ K + ++ +
Sbjct: 192 TYIKVWIDSIIFAVRMKSDLSRVCERTAKKLYERIKMSNRIAAMTVQAKSLMVSLVGIMA 251
Query: 309 VLIL--VIIGPAILSIIDT 325
+I+ V + P + +
Sbjct: 252 FMIVSTVSVSPDFIRTFSS 270
>gi|294146461|ref|YP_003559127.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
gi|292676878|dbj|BAI98395.1| Flp pilus assembly protein TadB [Sphingobium japonicum UT26S]
Length = 297
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 5/156 (3%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
W+ Q+R ++ A P +D + G S+ QAL R + + +
Sbjct: 110 WVRRRAQRRVEALIEALPYYIDAVRQMQAVGNSLAQALDRA---LADAPAVVRSYIAPVA 166
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
L A + R ++ + A+ + RYG SI L L + R ++
Sbjct: 167 RRLELGAPVADAMQVLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIK 226
Query: 287 AEKKAASLGPKLT--VPMIIFFLPVLILVIIGPAIL 320
E KAA K++ V +++ + + +LV + P +
Sbjct: 227 RELKAAISEAKISGRVLIVMPLVAMAVLVAMNPDYI 262
>gi|332982943|ref|YP_004464384.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700621|gb|AEE97562.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 308
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/267 (14%), Positives = 97/267 (36%), Gaps = 20/267 (7%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVD-ENIVNKLRAAGFRSEYSLNILLVVRLV 122
+K RL+ + L L + LR AG + + LL + ++
Sbjct: 29 KKQKLIERLQRQMVAPQAKPFSLLELLGYNKTVDKFRELLRKAGLAKINAEDALLSLTVL 88
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
I+F +L + F L +G +I+I ++ + R + + +
Sbjct: 89 SVILFAVL------NIAGMGWLSFLLPIGLIIVIP--------WVLNMIGTSRHNKLNKQ 134
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ +A+ + ++ +++ +R A+ PL E+ + +L A ++F
Sbjct: 135 FAEAVQDMADRLKLVPNLENGIRETAQI---TDQPLHGELEKILHKLDTGIGIIPALKDF 191
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ + +++ + + S+ D + +TR+ + K +
Sbjct: 192 ARDSESTMIDFWVDSIVFAYQMRASVADVCEEVSQKTRTRLKQNNQVATKLSEIKSMMLS 251
Query: 303 IIFFLPVLILVIIG--PAILSIIDTMK 327
I + L+ ++ P L+ DT+
Sbjct: 252 IAGIMIALMFMVYSSSPEYLNSFDTLW 278
>gi|258651873|ref|YP_003201029.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258555098|gb|ACV78040.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 284
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 18/228 (7%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ E L AG + + L + + L +
Sbjct: 28 PRKVPFERTREHLLQAGLPGISPVQLF---------GLQALSAVLVGLLGLTLTQSVSVS 78
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ I V P++ +S L KRQ+ ++ WP+ +D L V +G+S+ +AL A
Sbjct: 79 LIFAIFAAAV----PALMVSRLRHKRQADLRELWPEVVDNLTSGVRAGLSLPEAL---AA 131
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SI 268
L + A+ + + ++L + G +
Sbjct: 132 IGDRGPEQLRDPFKQFGADYRTTGRFNDSLDRLKATLADPVGDRVIESLRVAREVGGTDL 191
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G L L R + AE A + + P L+L+++
Sbjct: 192 GRLLSTLSGFLRDDARTRAELLARQSWS-VNAARMAVAAPWLVLILLA 238
>gi|225017405|ref|ZP_03706597.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
DSM 5476]
gi|224949815|gb|EEG31024.1| hypothetical protein CLOSTMETH_01331 [Clostridium methylpentosum
DSM 5476]
Length = 329
Score = 62.5 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/323 (14%), Positives = 112/323 (34%), Gaps = 23/323 (7%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
L E+ + + F ++ + L +G L R+ + A + +L QK
Sbjct: 28 TALLQRIEVTRVLYLILLCFGTLFGLGAFFLLAGLL--RLPTSASTKAVLTVTSRGKSQK 85
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
S ++ L + + L + + +L++A + I I
Sbjct: 86 GSINAVLFD-----MAARLSPLVHLDNYKRKKLEAQLKSAEIKMSPETYIAAAWVKAGLI 140
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
LI+ + IF + ++ + + +VQ+R+ I+ P
Sbjct: 141 ALLIIPALLIF----------PILAPVIVFLAVAVYFKEQKRADEIVQQRREEIEAELPR 190
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
++ + + + + L+ + G + E+ +TIA+++ + A +R
Sbjct: 191 FVNTIEQELRASRDVLNILKSYQRNAG---HAMKRELEITIADMASGNE-ENALTRMESR 246
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + L S + G + ++L + L + + +A K+
Sbjct: 247 IGSTMLSDVVRGL-ISVKRGDNGIMYFQMLSMTFKQLELQKLKLEAMKQPGKMR-KYSFM 304
Query: 306 FLPVLILVIIGPAILSIIDTMKD 328
L +L+ +G +++ D
Sbjct: 305 LLGCFLLMYLGVLGYVVLEAFGD 327
>gi|187479015|ref|YP_787039.1| type IV pilus assembly protein [Bordetella avium 197N]
gi|115423601|emb|CAJ50139.1| putative type IV pilus assembly protein [Bordetella avium 197N]
Length = 305
Score = 62.5 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 21/261 (8%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
R SA R +++ L + V +L E S +
Sbjct: 24 RRASAGDRRNASSAFLSSRLNRAEAGSQERALLRPIRMGVSAWTRTRL----LAGERSDS 79
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
L + + PI+ L I L + +G I +
Sbjct: 80 KLYAILFLPPILAGFLAWILAGPASALAGFLLLFVLGL-------------FRIWRQAGE 126
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + + PD +D ++ + G S++ A + I PL E + A + +
Sbjct: 127 RRQRMIKQLPDFIDGVVRLITIGNSVNAAFQGAMTSIDD---PLLEVLQRAEALMRSGKD 183
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A + + + + + + R+G L + + R L E A S
Sbjct: 184 LDSALLKVSRQYGLQELYLVSSVISLALRFGGRSDLVLERMAAFMRDLELAREELIALSA 243
Query: 295 GPKLTVPMIIFFLPVLILVII 315
+++V I+ LP+ + + I
Sbjct: 244 EVRMSV-WILSLLPIGLGLFI 263
>gi|118431779|ref|NP_148458.2| hypothetical protein APE_2207.1 [Aeropyrum pernix K1]
gi|116063101|dbj|BAA81219.2| hypothetical protein [Aeropyrum pernix K1]
Length = 332
Score = 62.5 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 3/225 (1%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
++ + L+ AG + + + ++ L + L + + + V
Sbjct: 50 RLVKTFELERNLKIAGIQVYPVMYMSRLLLLSTAVFLLGVYFSFWTLLSGFSIIVKAIVV 109
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ ++ F A ++ S R+ I+ P L I G+ + + RVA
Sbjct: 110 LIALSAPFMVFAAGLMYPSLKTGSRKEGIETELPFFAAYLSIMGRGGVPVSLVIDRVASL 169
Query: 211 IGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
L EE + ++ N A E + R+ + + G+ +
Sbjct: 170 --KIFKALREEAEMIRTKIRLLGKNPLDALEEHVLDSPSSVFRDFILGYTTAVKVGSDVI 227
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L + + RL + A + L + +++ + ++ I
Sbjct: 228 HYLEIRTQDLFERRLNDIRLLAERMTLYLEIYLVVAVIATIVFYI 272
>gi|237786541|ref|YP_002907246.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
44385]
gi|237759453|gb|ACR18703.1| hypothetical protein ckrop_1995 [Corynebacterium kroppenstedtii DSM
44385]
Length = 158
Score = 62.5 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 6/141 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDL+ C+ G+ + A+ VA+ G Q V + T L+ + +A+
Sbjct: 24 LDLVKACLSCGLPVGAAVGAVADSGGSQFVDV---WKGTANRLAMGVDSDIAWALCAE-- 78
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + + +S R G + + L R +A +A + +P+ F
Sbjct: 79 -NEVLGDFARRARRSARSGAQLAADIGALSMHMRHRATDQAVAEAEKASVYVALPLSFCF 137
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LP I V + P + ++ +
Sbjct: 138 LPAFIAVGLVPIAIGLLSGLS 158
>gi|314932289|gb|EFS96120.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
Length = 297
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V+ + + +
Sbjct: 1 MTITALSLLAGAIVTVGLLVIVAAFRPAPGPDLVAALEVVSGRTSSVAENVDQTRIGRIG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + RL+ +I
Sbjct: 61 RSVTRTFHVSVSPAMRAALRLQG-------------------TTPEAFYGRRLICALIGA 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + + L + + + G+ P+ + A
Sbjct: 102 ILPWLLNAVAIAVGANSPNLLIPSALCVALAGAGWMLPAARLKAAAGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + S + +
Sbjct: 162 IDLVVLERLANETSVDALTNAANM---SDSPLFVQIRQVLNRASLENVDPWNGLDRLAED 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + I+
Sbjct: 219 IKLPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I
Sbjct: 278 A-GSVMLILLGAAALTLITA 296
>gi|300697739|ref|YP_003748400.1| type II secretion system protein [Ralstonia solanacearum CFBP2957]
gi|299074463|emb|CBJ54013.1| Type II secretion system protein [Ralstonia solanacearum CFBP2957]
Length = 318
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 12/235 (5%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ + A V + + L A + L R + + F L +I + +
Sbjct: 54 EQINARYQVNAQSVPSAVPDSLHRA-WHDALRRADLEPGRRLYLLAFGPLAVIALVAWAV 112
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
+ L+ F + ++ + + P LD ++ + G ++
Sbjct: 113 SGLLSAVTAILLYALVAAFLFW-------SRTRRMNERLMQQLPGFLDGVVRLMSIGSAV 165
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
A + + PL + LT + A +++ + + L
Sbjct: 166 PAAFQAAS---ANTEPPLRTCLALTTQLQRAGKDLDAAVLAVGQLYRVNELVLLSSVLRL 222
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ RYG + + R + E A S +L+ I+ LPV++ II
Sbjct: 223 ALRYGGRADIVMERTAAFMRDREQAQKELLALSAETRLSA-WILGLLPVVVGGII 276
>gi|291529647|emb|CBK95233.1| Bacterial type II secretion system protein F domain [Eubacterium
rectale M104/1]
Length = 288
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 78/218 (35%), Gaps = 12/218 (5%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ ++ ++V+ + +++ ++ + +GF P+ I +
Sbjct: 81 ASTFILEKIVIGGALALACLVFA--------PGLIWKLTGALAAFILGFMVPNFMIYSKD 132
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+K +++ +L + ++G+ I +L + + L LS
Sbjct: 133 KKDNEAMQDDIVSIYTILKLNAKAGVFISDSLVECQRSVTNG-RLKAGLTELNNNILSRK 191
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + E F R + + N T L QS R G I + L + + + E++
Sbjct: 192 LTLEDSVELFNARFNNEQIDNLTVILRQSLRTG-QIANMLDDVSKQIEDINKLRTEQEKI 250
Query: 293 SL--GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ K+ + LI+ I G ++ ++ +
Sbjct: 251 KMQRQTKMMNIAFFVGISALIIYITGYQLVELLGDIMK 288
>gi|315081087|gb|EFT53063.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
Length = 297
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V+ + + +
Sbjct: 1 MTTTALSLLAGAIVTVGLLVIVAAFRPAPGPDLVAALEVVSGRTSSVAENVDQTRIGRIG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + RL+ +I
Sbjct: 61 RSVTRTFHVSVSPAMRAALRLQG-------------------TTPEAFYGRRLICALIGA 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + + L + + + G+ P+ + A
Sbjct: 102 ILPWLLNAVAIAVGANSPNLLIPSALCVALAGAGWMLPAARLKAAAGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + S + +
Sbjct: 162 IDLVVLERLANETSVDALTNAANM---SDSPLFVQIRQVLNRASLENVDPWNGLDRLAED 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + I+
Sbjct: 219 IKLPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I
Sbjct: 278 A-GSVMLILLGAAALTLITA 296
>gi|313765311|gb|EFS36675.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA1]
gi|313772774|gb|EFS38740.1| type II secretion system F domain protein [Propionibacterium acnes
HL074PA1]
gi|313806749|gb|EFS45254.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA2]
gi|313810914|gb|EFS48628.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA1]
gi|313815410|gb|EFS53124.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA1]
gi|313817518|gb|EFS55232.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA2]
gi|313826451|gb|EFS64165.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA1]
gi|313828808|gb|EFS66522.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA2]
gi|313831679|gb|EFS69393.1| type II secretion system F domain protein [Propionibacterium acnes
HL007PA1]
gi|313840370|gb|EFS78084.1| type II secretion system F domain protein [Propionibacterium acnes
HL086PA1]
gi|314916037|gb|EFS79868.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA4]
gi|314917189|gb|EFS81020.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA1]
gi|314921688|gb|EFS85519.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA3]
gi|314930989|gb|EFS94820.1| type II secretion system F domain protein [Propionibacterium acnes
HL067PA1]
gi|314955080|gb|EFS99486.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA1]
gi|314959120|gb|EFT03222.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA1]
gi|314961393|gb|EFT05494.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA2]
gi|314969714|gb|EFT13812.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA1]
gi|314977020|gb|EFT21115.1| type II secretion system F domain protein [Propionibacterium acnes
HL045PA1]
gi|314989056|gb|EFT33147.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA3]
gi|315082691|gb|EFT54667.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA2]
gi|315087885|gb|EFT59861.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA1]
gi|315099515|gb|EFT71491.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA2]
gi|315101978|gb|EFT73954.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA1]
gi|315110099|gb|EFT82075.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA2]
gi|327331302|gb|EGE73041.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL096PA2]
gi|327333935|gb|EGE75652.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL096PA3]
gi|327450235|gb|EGE96889.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA2]
gi|327454504|gb|EGF01159.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA3]
gi|327456573|gb|EGF03228.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA2]
gi|328756268|gb|EGF69884.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA1]
gi|328757049|gb|EGF70665.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA2]
gi|328761171|gb|EGF74714.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL099PA1]
Length = 147
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
P+AL +L +E+G+ + A+ VAE + G P +E++ + L+
Sbjct: 3 QHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDS 59
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A+ + ++ R+ Q + ++ G I + L ++ + + EKKA G
Sbjct: 60 RAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGV 116
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
P++ LP +LV + P I +
Sbjct: 117 DAIGPLVCCHLPAFLLVGVVPIIAGM 142
>gi|147921248|ref|YP_684938.1| putative type II secretion system protein [uncultured methanogenic
archaeon RC-I]
gi|110620334|emb|CAJ35612.1| putative bacterial type II secretion system protein [uncultured
methanogenic archaeon RC-I]
Length = 652
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 4/197 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I +L I + Y L + V ++L+ P + L K+ + A P+
Sbjct: 380 IAALLFIGLAYPYFSLPYFSMISHVDDILLLAAAVAIIPFIICWELRSKKVRKMDAAVPE 439
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L L ESG+++ A++ + + L+ E+ ++ + + + A F R
Sbjct: 440 FLKRLASFNESGLTLTMAIKAL---LNSNMGVLNSEIRKIWTDIEWGADAKEALIRFEYR 496
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+R + ++ I ++L + + + E E++ ++ L++ I F
Sbjct: 497 VNTASIRRVVTLITKASESTGDIKETLF-IAAADAAAIQSEREERFLNMLLYLSIIYISF 555
Query: 306 FLPVLILVIIGPAILSI 322
F+ + IL + L +
Sbjct: 556 FVFLYILYTLSTVFLPV 572
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 2/184 (1%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L + + ++ + + RQS+I + P A+ +
Sbjct: 92 FLLQVISSELFLILLILGVSFPATFFLVYVTFRNYPLYKSSIRQSAIDQMLPHAVTFMHA 151
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCV 251
G+S+ R + E ++ E + + + + + T D +
Sbjct: 152 MRSGGMSLLDIFRAINEH-REIYGEVTLEFQAVVQGVELLGMDLITSLRHAATITPSDHL 210
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+N ++ G + LR + ++ + E + L V + F L
Sbjct: 211 KNFFESTATHMESGGDLEKFLRTRADQFQAIAVQEHKTLLELLSMLAEVYVTAFVAGPLF 270
Query: 312 LVII 315
L+ I
Sbjct: 271 LITI 274
>gi|297627359|ref|YP_003689122.1| hypothetical protein PFREUD_22080 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296923124|emb|CBL57711.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 301
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 97/309 (31%), Gaps = 16/309 (5%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ V I+ AV+ + + + ++ T +
Sbjct: 1 MPDPAILVIISGAVAGLGAFLVLAGWARRPVRMGDAFAAL----------DGTVAGRQGP 50
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L SL + L + S+ S+ + ++V+ + L
Sbjct: 51 EEDLVRDADSSLERLGAYAYARLHLPLGRRARGMLQL---SDRSIGDFMAEKIVLCLAGL 107
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L I + + + +G +G+C P + + ++ + A D
Sbjct: 108 ALPTIVTAVSAAMGSPLRAPTLLVALALGALGWCWPDLSLRAGSKRTRFEADEALLTLFD 167
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+++ + S QAL A + ++ +L A L + ++
Sbjct: 168 LVMLERMANRSATQALSAAA-SVSDVAIFRRVRGVLAQAGLEQ-RPPWDGLRRLAHDLRL 225
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + D G S+ ++L V E R L +A + ++T+ M + +
Sbjct: 226 PPLEDLADIMQL-DEQGASLTEALAARVEELRDAHLSAGRMEAQEVSERMTLWMALPVMV 284
Query: 309 VLILVIIGP 317
+ I P
Sbjct: 285 FGLSFIAPP 293
>gi|154151943|ref|YP_001405561.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000495|gb|ABS56918.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 300
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 74/227 (32%), Gaps = 12/227 (5%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR----- 149
+ +I+ + A E + + + +V I+ + ++ + + PF +
Sbjct: 31 NRDIIKLIYQADL--EMTPGMFTSLWIVSTILVGSVMVLVASIIFLVPQSPFAIPSPAPY 88
Query: 150 -VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ ++ N ++ ++ I P AL + I SG + +RR+A
Sbjct: 89 ILLFALIGSAAIAIGFPFYLQNQIENKKRDIDTQIPYALAFMSILASSGATPLDIIRRIA 148
Query: 209 EDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+S E + + + A T D R+ + G
Sbjct: 149 R---EDYGQISNEFRKVLFRVDILGEDVVTAMNGLVQNTPSDLFRDICIDITNIIYGGGG 205
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ L E + R ++ SL + + + + ++
Sbjct: 206 LKSYLETKSKELMAIRRQTYKEFVESLAVFGEGYLGGVVMTITLAIL 252
>gi|257793110|ref|YP_003186508.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479802|gb|ACV60119.1| hypothetical protein Aaci_3123 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 294
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/283 (13%), Positives = 94/283 (33%), Gaps = 21/283 (7%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
I ++ + KR+ V + ++Q + S + R++ L +
Sbjct: 1 MLYILLPLLFVWAGWPIVKRVDPVVGDTWYRVRRQYRLTEGKSPAERIKRLVYGYLEAVI 60
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L +G + +L+++ ++ +I++ + K
Sbjct: 61 ------PASWLAPFDRILVLSGQAGKRRALDILLIQ-----AGMLAIVIFLTVWAKHT-- 107
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++L G++ P +Q R+ + + I +++AL
Sbjct: 108 ----PTWFILLYGFLVMVIPWRRWYRRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEAL 163
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++A D Q + + E A + ++ + QA+ ++
Sbjct: 164 WQIARDAAAQRTDFGRRFVARMQEARV-RPLGDALHDLAEEFRVPELTRFVQAIRHAEAN 222
Query: 265 G-TSIGDSLRVLVSE--TRSERLMEAEKKAASLGPKLTVPMII 304
S+ D L + + + + L++AEK A L ++ ++
Sbjct: 223 SLGSLADILETQIRDESAQLDELVDAEKNAMQLKLRMMSVVMF 265
>gi|314972764|gb|EFT16861.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
Length = 297
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/320 (13%), Positives = 103/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V+ + +Q +
Sbjct: 1 MTTTALSLLAGAVVTVGLLVITAAFRPAPGPDLVAALEVVSGRTSSVDEQIDQTRIGRLG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ RL+ +
Sbjct: 61 RSVTRTFHLSVSPAMRAALRLQG-------------------TPPEAFYGRRLMSALAGA 101
Query: 129 ILGIIW--IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + I + + + G+ P+ + A
Sbjct: 102 ILPWLLNAIAIAVGANFPSLLIPAALCVALAGAGWMLPAARLKAATGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + + + + +
Sbjct: 162 IDLVVLERLANETSVDALTNAAHV---SDAPLFIQIRQVLNRAALENVDPWNGLDRLADD 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + ++
Sbjct: 219 IKLPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I T
Sbjct: 278 A-GSVMLILLGAAALTLITT 296
>gi|261251594|ref|ZP_05944168.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
gi|260938467|gb|EEX94455.1| flp pilus assembly protein TadB [Vibrio orientalis CIP 102891]
Length = 302
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 14/156 (8%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+++ +++ L L+ V +G+S+ QA+ +VAE GG L E +L+
Sbjct: 117 RKKQQIEEFEQSIVQVLGLISRAVSAGLSVPQAISQVAESQGGL---LGREFSRIEDQLA 173
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ R R T AL+ + G + + L L R M+ + K
Sbjct: 174 LGHGMRYTLNEACIRLPYKAFRYFTIALVLNQSNGGQLREILHSLSRTLHDNRTMQKKVK 233
Query: 291 AASLGPKLTV-----------PMIIFFLPVLILVII 315
+ + P++ ++ + P L +++I
Sbjct: 234 SLTSEPRMAARFLSLLPLGLLAVVAWINPSLFVLLI 269
>gi|295395217|ref|ZP_06805425.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971979|gb|EFG47846.1| type II secretion system protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 290
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 18/221 (8%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
++LRAAG + V + L++ + Y F + +
Sbjct: 41 RTRDELRAAGLHRVSPAQLF----TVCLVCGLMVASV---------TYVFSPALPIAVCF 87
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G AP + +K S + WP+A+D L V +G+S+ +A+ V
Sbjct: 88 GLFATVAPYQIVKIRARKTSVSRRTLWPEAIDHLSSGVRAGLSLPEAV---CGLSARGPV 144
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVL 275
L + E + +A F AL + G +G L+ L
Sbjct: 145 ALRPLFEVFAREYRATGSFSLALNRFKESAADPVADRMVAALHITREVGGTDLGAMLKTL 204
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
R + AE A +T + P ++L ++
Sbjct: 205 SQFLREDARTRAELTARQSWT-VTGAKLGVAAPWVVLGLLA 244
>gi|257069183|ref|YP_003155438.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
gi|256560001|gb|ACU85848.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
Length = 290
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 10/184 (5%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + + V + IG V P++ + + ++R ++++ WP+A+D +
Sbjct: 64 VGLGLVVAAGLWAGSSAVVPSLAIGAVVSLLPTLVLRSAARRRTTAMREVWPEAVDHINS 123
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G+S+ +AL +++ + L + + + R
Sbjct: 124 AIRAGLSLPEALVQLSRN---GPEELRPAFAEYALDYQASGDFASCLDRLKIRLADPVGD 180
Query: 253 NATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGP------KLTVPMIIF 305
+AL + G +G LR L + R + AE +A L P I+
Sbjct: 181 RIVEALRITRDVGGTDLGSLLRTLSAFLREDARTRAELEARQSWTVNAARLALAAPWIVL 240
Query: 306 FLPV 309
L
Sbjct: 241 ALMA 244
>gi|147919599|ref|YP_686661.1| putative type II secretion system protein [uncultured methanogenic
archaeon RC-I]
gi|110622057|emb|CAJ37335.1| putative bacterial type II secretion system protein [uncultured
methanogenic archaeon RC-I]
Length = 683
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 4/185 (2%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
++ P +I+ + P R+ I PD L L E+G+
Sbjct: 420 PLIIYGPIIGYFDDLIVYFLIISLTPLALFHESKNMRERKIASEMPDFLKKLASTNETGM 479
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++ Q++ +A LS+E+ +L + + A + F N + +
Sbjct: 480 TLTQSINLIAN---SNFGTLSKEVQKIHKDLQWGTDVSTALKRFANSLRTSSSTRVITLI 536
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
++ I D L + ++ R+ LM E+ L + + I F + + + + +
Sbjct: 537 TKASESSGDIKDVLNIAANDARANELMRKERFDGML-IYVVIIFISFLVFLYCVYTLTSS 595
Query: 319 ILSII 323
+ ++
Sbjct: 596 FIPVM 600
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/262 (16%), Positives = 91/262 (34%), Gaps = 29/262 (11%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNI--LLVVRLVVPIIFLILGIIWIFGY--------- 138
K + +LR A Y + + + ++ I+ +LG+I F
Sbjct: 18 KRKDRYYQLQKQLRQAHMAQSYEVYVSVAYLSSVIAAIVGAMLGLIIGFLLRGVIIDAVG 77
Query: 139 ---------------DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ + A L G + F + S R+S I +
Sbjct: 78 ATNLHMPQSMSWIFPFAGIIVLLVTTILAGALGGIITFSTFMLIPSFNASDRKSRINKGL 137
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENF 242
P A+ + + G I LR + E +S E+ I ++ + + + A N
Sbjct: 138 PSAVTFMYAMSKGGADIITILRSLYEA-ETTYGEVSREIGFVIRDMDYFGNDLRAALINC 196
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N+T D +++ L+ G + L V + R ++ + LG +
Sbjct: 197 ANQTPSDLLQDLLSNLLSVIDSGGDVTTYLNNKVEQYRMRIALDQKSFLEILGLIAESYV 256
Query: 303 IIFFLPVLILVIIGPAILSIID 324
F L ++I+ ++++I++
Sbjct: 257 TCFVAGPLFIIIMS-SVMTIMN 277
>gi|257793130|ref|YP_003186528.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479822|gb|ACV60139.1| hypothetical protein Aaci_3143 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 268
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/259 (15%), Positives = 85/259 (32%), Gaps = 12/259 (4%)
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
S S + L + + + ++ R G S L
Sbjct: 4 AALSALAVSGFLLWLVPWIQRLETWWHRRVFVELRFQSSLRQWERRLGDWLRRSQVKLTA 63
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ +L + + L+ + + +++G+ +++ ++ +
Sbjct: 64 RQ-------FLLFLFFAAVLLPLMIWGGMHSLTFGVVVGWSMAVYMAMYPWQKRKRFEDD 116
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
++ L+ E GI+ + L + I L + + + A
Sbjct: 117 LRFGLRRVKMLMASLYERGITPEDMLPLL---ISATDGALRQLLERAYQRMQTTDTLADA 173
Query: 239 FENFYNRTQMDCVRNATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
T + +R IQ+ RY GTS+ L+ + + R++ L EK+A
Sbjct: 174 LTWMAQETGLAEMRQLASVWIQAGRYEGTSLETQLKQMAVDERAQFLFNLEKRAERKRMS 233
Query: 298 LTVPMIIFF-LPVLILVII 315
+ +I F LP + LV I
Sbjct: 234 VLFEVIAFIALPTIFLVGI 252
>gi|314929715|gb|EFS93546.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|328906786|gb|EGG26557.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 297
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/320 (13%), Positives = 104/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V+ + +Q +
Sbjct: 1 MTTTALSLLAGAVVTVGLLVITAAFRPAPGPDLVAALEVVSGRTSSVDEQIDQTRIGRLG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + RL+ +
Sbjct: 61 RSVTRTFHLSVSPAMRAALRLQGT-------------------TPEAFYGRRLMSALAGA 101
Query: 129 ILGIIW--IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + I + + + G+ P+ + A
Sbjct: 102 ILPWLLNAIAIAVGANFPSLLIPAALCVALAGAGWMLPAARLKAATGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + + + + +
Sbjct: 162 IDLVVLERLANETSVDALTNAAHV---SDAPLFIQIRQVLNRAALENVDPWNGLDRLADD 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + ++
Sbjct: 219 IKLPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTVLQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I T
Sbjct: 278 A-GSVMLILLGAAALTLITT 296
>gi|21234167|ref|NP_639745.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
gi|13620653|emb|CAC36692.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 297
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/313 (10%), Positives = 93/313 (29%), Gaps = 18/313 (5%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A+ + V + + + + S + + + + L
Sbjct: 1 MIALNVIAPAAAAGVLVGLGVRAAWPAKPDLTSALDRLDASKVPTALPTDALAPTGSLPE 60
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R L + + S L R + + L++ ++
Sbjct: 61 RVGNRLLADFGDRIALPLRDLNLLRI-----------SPAEHLGKRALFALYGLVIPLLL 109
Query: 135 IFGYDKLLE-YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+P+ + G + + + + P ++ + + ++ A L+ + +
Sbjct: 110 QAMLALAGAPFPYVVPAGLSLGLAALFWLWPGREVAKEAAEARLIVRHAAASYLERVALA 169
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVR 252
+ QAL A + M + A + + +
Sbjct: 170 RVANSGAAQALTDTARVGEN---FIFNRMRQVFHQADLAGVTPWDALKQLGEELDIPELT 226
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L + G ++ +L+ + R L + + KA + +P+ + ++I
Sbjct: 227 RPADTLALAGD-GAAVYTTLQAQARQLRIALLSDQKAKANEASAAMILPVTFGVI-LMIT 284
Query: 313 VIIGPAILSIIDT 325
++ P ++I+ +
Sbjct: 285 FVMIPLTITILGS 297
>gi|323486497|ref|ZP_08091820.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum
WAL-14163]
gi|323400200|gb|EGA92575.1| hypothetical protein HMPREF9474_03571 [Clostridium symbiosum
WAL-14163]
Length = 404
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 14/161 (8%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+KR+ + + + L L++ + +G+ + +A ++ +D +
Sbjct: 244 QEAKKKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVKDYRRTEEKAGKRAAYEEMA 303
Query: 229 -----LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSE 282
+ A+ F NR ++ R L Q+ + G+ S+ L + +
Sbjct: 304 AAYYLMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPVLEAEMEAAFEQ 363
Query: 283 RLMEAEKKAASLGPKLT--------VPMIIFFLPVLILVII 315
R A + KL + M++ +P + I
Sbjct: 364 RKNLARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAFGI 404
>gi|323694362|ref|ZP_08108535.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum
WAL-14673]
gi|323501602|gb|EGB17491.1| hypothetical protein HMPREF9475_03399 [Clostridium symbiosum
WAL-14673]
Length = 404
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 14/161 (8%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+KR+ + + + L L++ + +G+ + +A ++ ED +
Sbjct: 244 QEAKKKRECQMMMDYSEILSRLVVFLGAGLPVRKAWAKIVEDYRRTEEKAGKRAAYEEMA 303
Query: 229 -----LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSE 282
+ A+ F NR ++ R L Q+ + G+ S+ L + +
Sbjct: 304 AAYYLMQRGVPEIQAYSEFGNRCRVLPYRKLAGILEQNVKNGSKSLTPVLEAEMEAAFEQ 363
Query: 283 RLMEAEKKAASLGPKLT--------VPMIIFFLPVLILVII 315
R A + KL + M++ +P + I
Sbjct: 364 RKNLARRLGEEASTKLLLPLFMMLLIVMVMITVPAFLAFGI 404
>gi|229492933|ref|ZP_04386729.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
gi|229320207|gb|EEN86032.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
Length = 299
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 73/208 (35%), Gaps = 4/208 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKL-LEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+L +LV L++ I L + + + F P + I
Sbjct: 90 PAHVLGEKLVAAFFGLLIFPILNLVLTAFGLGLAWSMPAILSLATAVFLFMIPDIDIRRR 149
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ +A +DL+ +C G+ Q+L A+ +G V L + L A
Sbjct: 150 AAAARAEFAQALSSYIDLVALCRRGGVGSTQSLEIAAQ-VGDSWVFLRLDEELYEAG-RS 207
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A + + + + + + G S+ SLR + RS + + A
Sbjct: 208 GEAPWSALTRVSQQLGLAELGDLADIMTMTGDKGASVYTSLRAKAASLRSAQTSAEQSAA 267
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAI 319
KL +P+ + + +++ PA+
Sbjct: 268 VEATEKLAMPL-AGLAGLFMALLLIPAV 294
>gi|323493499|ref|ZP_08098621.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
gi|323312322|gb|EGA65464.1| Flp pilus assembly protein TadB [Vibrio brasiliensis LMG 20546]
Length = 302
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/282 (13%), Positives = 88/282 (31%), Gaps = 39/282 (13%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ + ++ + ++ L+ R+ + +++ S + +
Sbjct: 1 MIYLLVSFVVVCGAVWAIRRRVLKVRLAVRLDGLNLQGREEAA------PSILRKAAPAT 54
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
F+ +L+ D + L+ L +G
Sbjct: 55 VSSRFLVRLDALFSAKDRAL----------------------LLCCCAGLPVGGYLFLTM 92
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + A+++ + +++ +++ L L+ V +G+
Sbjct: 93 LDIQWRLAAGLLAALVIGLVLFVV--------RKRQQVEEFEQSIVQVLGLISRAVSAGL 144
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S+ QA+ +VAE Q L E +L+ + R R T AL
Sbjct: 145 SVPQAISQVAE---AQDGLLGREFSRIEDQLALGHGMKHTLNEACVRLPYKAFRYFTIAL 201
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + D L L R M+ + K+ + P++
Sbjct: 202 VLNQNSGGQLRDILHSLSRTLHDNRTMQKKVKSLTAEPRMAA 243
>gi|239934067|ref|ZP_04691020.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291442506|ref|ZP_06581896.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291345401|gb|EFE72357.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 294
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 87/271 (32%), Gaps = 2/271 (0%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
++ L G + + + E + +LQ+ S + + L
Sbjct: 3 LLPVVLTGGTVGAGLALLVREMLRPQPALAAALQRTSPGALTMPEPDLDRDEVWGRWLLA 62
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ + + + +L + + + ++ I + PF +
Sbjct: 63 RLERLPGVRVPAKNLALLGQGPGQFMLKKAALAALGLVCPVLVTIPWLIAGISLPFYVPA 122
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+ I + F P + + + ++ + A LDL+ + + +AL R A
Sbjct: 123 VVGLTIAALLFVTPDLAVRDQAKRAREEFAHALAAYLDLVALKRAADAGPTEALERAAAV 182
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G L + L A L A + + + + + S G ++
Sbjct: 183 GQG-WPFLYLQSALRRARLEK-IPPYQALTDLAEEYDLPVLDDVADIMRGSATDGAAVYK 240
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+LR + +E L + +A + K+T P
Sbjct: 241 ALRARTAALNAELLADQAAEANAASEKMTAP 271
>gi|291529646|emb|CBK95232.1| hypothetical protein ERE_34920 [Eubacterium rectale M104/1]
Length = 331
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/322 (10%), Positives = 107/322 (33%), Gaps = 40/322 (12%)
Query: 5 FFDLFDATELAVA-------ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRK 57
FD +T +A I +++F ++ ++ + + ++ K V + E+ +
Sbjct: 7 LFDTLMSTNKMLAYMHAGTFILVFIAVFLIVTYLINHNWFAKKMAKFKNDVKKQEELRNE 66
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
+ + + + + L +G ++++
Sbjct: 67 EYRKRSLLEG--------------------DFEDDSRMYKLTKMLNESGLKNKFPELNAS 106
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
L + ++ I G+I + + + V++ + +
Sbjct: 107 NFILTIILLCGITGLIV---------FIITKAAIISLGAAAIMGILVFVYMQVSINRNYI 157
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + +++L S +I + L R A + PL +E+ N +
Sbjct: 158 NTENEIVKFINMLDNVSSSENTIGEMLHRTAPYLKD---PLRSMTEECYSEIKTDGNVPL 214
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A ++ ++ ++ +L + + + + R+ + + E++ +
Sbjct: 215 ALKHMADKANHKKLKQILNSLKSCATHNENYSEVIEDNRESIRAYIMFKKEER-NIIKNA 273
Query: 298 LTVPMIIFFLPVLILVIIGPAI 319
L +I+ V+++ ++G +
Sbjct: 274 LFETVILAIAGVVMVYMVGTMV 295
>gi|309778766|ref|ZP_07673539.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
gi|308922474|gb|EFP68098.1| type II secretion system protein [Ralstonia sp. 5_7_47FAA]
Length = 308
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/279 (14%), Positives = 96/279 (34%), Gaps = 19/279 (6%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ +L + + +++++ S +R + + + + V +++ + A
Sbjct: 15 LMGASLMLWAEAVRRCEREASRSFVRAQTEQINARYQPNVEPVPASVPDSLNRAWQDALR 74
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R+ + V L+ P + + L + + L V V L
Sbjct: 75 RAGIEPSRRFYVLLIGPALMIALAVWAMSSALSALTALALYVVIVVFL------------ 122
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
I N +K + P LD ++ + G ++ A + + PL +
Sbjct: 123 IWNRTRKINERLLAQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEQPLRNCLTAITQ 179
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A + +++ + + L + RYG + + R + +
Sbjct: 180 MQRAGKDLDAAVLTVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQR 239
Query: 288 EKKAASLGPKLTVPMIIFFLPVL---ILVIIGPAILSII 323
E A S +L+ II LPV+ ++++ A + +
Sbjct: 240 ELFALSAETRLSA-WIIGLLPVVVGGVIIMFNAAYIMSM 277
>gi|154482610|ref|ZP_02025058.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
27560]
gi|149736510|gb|EDM52396.1| hypothetical protein EUBVEN_00277 [Eubacterium ventriosum ATCC
27560]
Length = 238
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 64/156 (41%), Gaps = 7/156 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELS 230
+ ++ + + + L L + +G S++ L+ ++ + E+ L + L
Sbjct: 52 RAKAEFEHQYKEMLVALKDGIVTGYSVENGLKESYREMVNIYGYDGLICSELRLMTSRLK 111
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
++ F++F RT ++ + + G ++ + ++ ++ + ++ E
Sbjct: 112 LNTPIEIVFKDFAERTDLESAHMFYNTFSIAQKSGGNMNNVIKRVIENIVLKESVKEEIN 171
Query: 291 AASLGPKLTVPMIIFFLPVLILVII---GPAILSII 323
A + K I+ +P+L++ I P L I+
Sbjct: 172 VA-INDKKLEQRIMTVIPLLLIGYISMASPGFLDIM 206
>gi|297560196|ref|YP_003679170.1| type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844644|gb|ADH66664.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 297
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 3/195 (1%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG-FCAPSVWI 168
E S L + ++ L L + + P V ++ +G + AP + +
Sbjct: 83 ERSPESYLAEKFTSLLLGLALPPLLGSIFALAGIRPSATVAAVVWVLFVLGTWSAPDMSL 142
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
+ KR+ ++RA DL+++ + G ++ AL G ++ E L
Sbjct: 143 RDEANKRREQMRRALASFADLVVVSLAGGAGVNGALADAGAAGNGWAMARIRESLRQATL 202
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + A + R +L + G I SL R++ L E +
Sbjct: 203 MR--QSPWTALRDLGERYDTPEFAELAASLQLAGADGARIRSSLAAKAKTLRTQFLAEMD 260
Query: 289 KKAASLGPKLTVPMI 303
+A S ++++P+I
Sbjct: 261 AEAQSATERMSLPVI 275
>gi|304405042|ref|ZP_07386702.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345921|gb|EFM11755.1| Type II secretion system F domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 268
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 23/246 (9%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVP--IIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+L AG S+ +G+ W+ + + L
Sbjct: 23 RLQLPLAGVHVRLSVLRGQSWGFADTERYAAQAIGLGWMAWTCSAILAALAQEGALLALG 82
Query: 157 GYVGFCAP---SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+G P ++ +++R+ + A PD L L++ V +G ++ +A+ R A+
Sbjct: 83 AMIGVMLPLAKYREVAQQMERRRQDMVLALPDVLGKLMLLVGAGETVQRAIIRCADGRED 142
Query: 214 QSV----------------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ PL E I L + + E F R +
Sbjct: 143 VTGSSINKGKKRKKAKLEHPLHVEWTRMIRSLENGQSFAQSIEAFSRRCAVQEASMFATV 202
Query: 258 LIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ R G +L+ L +R A + KL P+ +L++ +
Sbjct: 203 VLLHYRKGGDRFVLALKELSFSLWEKRKATARMRGEEASSKLVFPL-AGIFFLLLIAVAA 261
Query: 317 PAILSI 322
PA+L +
Sbjct: 262 PAVLMM 267
>gi|297243108|ref|ZP_06927046.1| Flp pilus assembly protein TadC [Gardnerella vaginalis AMD]
gi|296889319|gb|EFH28053.1| Flp pilus assembly protein TadC [Gardnerella vaginalis AMD]
Length = 215
Score = 61.7 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 22/155 (14%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++++ + SG++I +AL V + + L A+ + Y R
Sbjct: 64 MIIVSLRSGVAITKALSAVGQVFPCGQGMW---LCSVSNALLAGDTWHEAWSSTYTRQDN 120
Query: 249 DCV-------------------RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ R +L +S YG+S L L A +
Sbjct: 121 FELENKSKFTNRKNLDSSEILARWLMTSLKESWCYGSSPVPVLSALAQHYERNMANIARQ 180
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+++ L +L +P+ + FLP I + I P ++S++
Sbjct: 181 ESSRLSVRLLLPVGLCFLPSFICIGILPTVMSLMR 215
>gi|157283961|ref|YP_001468229.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151363103|gb|ABS06105.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 305
Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/279 (15%), Positives = 98/279 (35%), Gaps = 5/279 (1%)
Query: 50 VEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS 109
E+ Q + ++ A++ + ++ + ++ I +KL
Sbjct: 30 GEQLARLGAQTSYDERYRAAASTARSHTSKAHRWLARRLAGTPVMTSTIDDKLSRDLSLL 89
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY--PFQLRVGAVILIGYVGFCAPSVW 167
R+ + +L + F + P + + +L+ V + P+
Sbjct: 90 NVDAAAFTATRVAMVAAGFLLAPVLCFIALAVTGGSTPAVVVLTVTLLVTLVAYVVPARR 149
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + + R++ + A +DL+ + SG +AL A IG + L A
Sbjct: 150 VHSTAESRRADFRAAITSYMDLVAMRAASGAGASEALADAAR-IGRGWPFARVRLALADA 208
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+S A M +++ + L+ +D G +LR R +L A
Sbjct: 209 RIS-GYTPARALGRLGEEIGMHELQDLSAQLLLADATGAQAEVTLRERARSLRDAQLAVA 267
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ KA + + ++ L +L ++ P + + + +
Sbjct: 268 QGKAGERSQTMVIAQLLLAL-GFMLFVLYPPVSNFMTAL 305
>gi|261402163|ref|YP_003246387.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
gi|261369156|gb|ACX71905.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
Length = 301
Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 89/203 (43%), Gaps = 6/203 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ F+ + II ++ + + A+ L PS+ N +++ P
Sbjct: 35 LAFIGVLIILSMIIFHVINLTIKGMIIAIALYVGALISLPSILYENK----METLENNIP 90
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
AL ++++ +ESG SI++AL V ++ + + +++L + + + + A N
Sbjct: 91 QALYIMILTLESGRSINEALEEVVKNNIKEVSNVFKKVLYLMEKQKI--SFEEAMTIVSN 148
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
++ + +I++ +YG ++ DSLRVL RL + + + + +I+
Sbjct: 149 LYDSKVLKMLARIMIENRKYGGNLADSLRVLAKTLEDFRLYKRQLLSVTASGLAVGFIIL 208
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
+ + ++G +++I M
Sbjct: 209 CGVIPAVAALLGAYLITISKMMG 231
>gi|126179945|ref|YP_001047910.1| type II secretion system protein [Methanoculleus marisnigri JR1]
gi|125862739|gb|ABN57928.1| type II secretion system protein [Methanoculleus marisnigri JR1]
Length = 307
Score = 61.7 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/191 (14%), Positives = 69/191 (36%), Gaps = 8/191 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ +++ K+L + V ++++ G + + ++ +R+ +I P A
Sbjct: 78 GAVPEVLYALNDYKMLLGTVAITVISLLVFGGITYLIYLLYPGIKAGERRRNIDATLPYA 137
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
++ + +GI+ D+ R + + + E E F + A
Sbjct: 138 INYVTAMSSAGITPDEVFRLLGQS--TIYGESAVEARYISRETDFFGKDLLDALRTVSQA 195
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET----RSERLMEAEKKAASLGPKLTVP 301
T + +R Q + S G+++ + R + ++ E +T
Sbjct: 196 TPSERMREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSFLETLGLIAESYVTA- 254
Query: 302 MIIFFLPVLIL 312
M+ L ++IL
Sbjct: 255 MVAGMLFLIIL 265
>gi|239918297|ref|YP_002957855.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
gi|239839504|gb|ACS31301.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
Length = 339
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 9/176 (5%)
Query: 151 GAVILIGYVGFCAPSVWISNL-VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V +G + + A W L + LD+L + +G S+ AL +
Sbjct: 169 AVVAAVGLLFWLAGRSWTRLLLRAAAREPAAVGAAVVLDVLAALLSAGRSLPAALDDLGR 228
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ G + + T A L + + A+ L R G +
Sbjct: 229 TLPG-----ARGLRATAALLLWGRDWDEAWAGLDT---DPVWIETAARLRPLHRSGMAGA 280
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+L + R + E+ A L L +P+ + LP + + P +++++
Sbjct: 281 RTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLPAFVCWGVVPVVMALLRA 336
>gi|258510585|ref|YP_003184019.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477311|gb|ACV57630.1| hypothetical protein Aaci_0582 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 294
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/283 (13%), Positives = 93/283 (32%), Gaps = 21/283 (7%)
Query: 25 FSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFV 84
+ ++ + KR+ V + ++Q + S + R++ L +
Sbjct: 1 MLYVLLPLLFVWAGWPIVKRVDPVVGDTWYRVRRQYRLTEGKSPTERIKRLVYGYLEAVI 60
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
L +G + +L+++ + I + L + +
Sbjct: 61 ------PASWLAPFDRILVLSGQAGKRRALDVLLIQAGMLAIVIFLAV-----------W 103
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++L G++ P +Q R+ + + I +++AL
Sbjct: 104 AKHTPTWFILLYGFLVMVIPWRRWYRRIQARRRDAAWQVRQLKRRFVSLLRRRIPLEEAL 163
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
++A+D Q + + E A + ++ + QA+ ++
Sbjct: 164 WQIAKDAAAQRTDFGRRFVARMQEARV-RALGDALHDLAEEFRVPELTRFVQAIRHAEAN 222
Query: 265 G-TSIGDSLRVLVSE--TRSERLMEAEKKAASLGPKLTVPMII 304
S+ D L + + + + L+EAEK A L ++ ++
Sbjct: 223 SLGSLADILETQIRDESAQLDELVEAEKNAMQLKLRMMSVVMF 265
>gi|283782635|ref|YP_003373389.1| hypothetical protein HMPREF0424_0122 [Gardnerella vaginalis 409-05]
gi|283441567|gb|ADB14033.1| conserved hypothetical protein [Gardnerella vaginalis 409-05]
Length = 215
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 22/155 (14%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++++ + SG++I +AL V + + L A+ + Y R
Sbjct: 64 MIIVSLRSGVAITRALSAVGQVFPCGQGMW---LCSVSNALLAGDTWHEAWSSTYTRQDN 120
Query: 249 DCV-------------------RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ R +L +S YG+S L L A +
Sbjct: 121 FELENKSKFTNRKNLDSSEILARWLMTSLKESWCYGSSPVPVLSALAQHYERNMANIARQ 180
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+++ L +L +P+ + FLP I + I P ++S++
Sbjct: 181 ESSRLSVRLLLPVGLCFLPSFICIGILPTVMSLMR 215
>gi|163840095|ref|YP_001624500.1| flp pilus assembly protein [Renibacterium salmoninarum ATCC 33209]
gi|162953571|gb|ABY23086.1| type II secretion system protein [Renibacterium salmoninarum ATCC
33209]
Length = 284
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 5/208 (2%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ +L V I + LL + + G P + +
Sbjct: 35 PMTQMVLRAGIENVSAIGFAATCLGCGVTAFLLTFIISASMPIACCFTVFGLMLPVLVVR 94
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++R + ++ WPD +D L + +G+S+ +AL ++AE PL A+
Sbjct: 95 RRAKRRIAVLRELWPDVVDHLRSAIRAGLSLAEALIQLAEK---GPEPLRPYFRDFGADY 151
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAE 288
+ + + + R +AL + G+ +G L L R +E
Sbjct: 152 RAGGSFETSLDLLKERLADPVADRIFEALRLTREVGGSDLGLLLGTLSEFLRESARTRSE 211
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIG 316
+A + I P ++LV++
Sbjct: 212 LEARQSWT-VNAARIAVAAPWIVLVLLA 238
>gi|154151893|ref|YP_001405511.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000445|gb|ABS56868.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 652
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 3/174 (1%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
+ + VPI L + ++ + F + A ++I + P + +
Sbjct: 367 LYITVPIAILYIVLVLLNIPYYADPEIFMEVMNAHLVIALLIVLIPYAIFYEIWSHKVKG 426
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I+ PD L+ + G++I QA+ + LS E+ ++ + N A
Sbjct: 427 IQSMIPDFLERMAGINRVGLTIAQAIGIMVN---TNLGLLSYEIRRIKRDMDWGANFSEA 483
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
F R + + ++ IG+ L + S+ + ++ E+ A
Sbjct: 484 LMRFEQRISTASIARTVTLITKASEMTGQIGEVLAIAASDAKMSETLKKERLAE 537
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 3/190 (1%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + Y+ + R I +A+ +
Sbjct: 85 LAFLSSPTVVVSVSVAVSFAFGAYIAYLLLLRLPHIEKNNRSIKINLTLHNAVAYMYAMR 144
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRN 253
G + ++E+ ++ E ++ + + A + + T +++
Sbjct: 145 RGGAELMSIFYALSEN-APIYGEVALEFRQITRDVDYFGSDMLTAMRHLSSTTPSAKLKD 203
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ L+ G + + L V + E E ++ L + +F L L+
Sbjct: 204 FLEDLLSVIESGGDLSEFLASRVRLYQEEARFEQKQFLTLLSMVAESYVTLFVAGPLFLI 263
Query: 314 IIGPAILSII 323
II ++ ++
Sbjct: 264 IIM-VVMGMM 272
>gi|221195456|ref|ZP_03568511.1| bacterial type II secretion system protein F domain protein
[Atopobium rimae ATCC 49626]
gi|221184643|gb|EEE17035.1| bacterial type II secretion system protein F domain protein
[Atopobium rimae ATCC 49626]
Length = 311
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 6/196 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ I G L+ F+ G + P + ++ + + + + P L
Sbjct: 91 LLSIVGVAFLIGLLFRSVAGVFFTAIALIAYIPMKYENDCRKLKLE-VSHSMPGIYRTLS 149
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ + SG ++ QA+ V +++ + +L + E +
Sbjct: 150 VALGSGQTLSQAIEYVGNH---SHGAVAQYFIRASLKLRCGMPVESVVEELACDLSVPGS 206
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPV 309
AL+ S R G+ + + + + E + +L+ ++ + L +
Sbjct: 207 SLLATALVISHRTGSPLRNLFLRTATLVERQSEFERLLSVKTAQVRLSARIVCLLPLLLI 266
Query: 310 LILVIIGPAILSIIDT 325
+L +I P + T
Sbjct: 267 GVLSLISPDFQKGLTT 282
>gi|146297625|ref|YP_001181396.1| hypothetical protein Csac_2634 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145411201|gb|ABP68205.1| hypothetical protein Csac_2634 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 253
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 7/221 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + + + ++ + IIF +L I F + L V G +G+ P +
Sbjct: 37 RIQSATAKIDKIQSKIQIIFALLMGIAGFFVSAWWTGSYPLAVMGAFGFGAIGYVTPDLI 96
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ +K + L I ++S + +++ AE + LS+ + A
Sbjct: 97 AKSMAKKTEK----YLTTISTLFEIGIKSNVPLEKIFDTCAEVVK--HAELSKALQRAGA 150
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + AFE ++ AL + ++ GTS SL +
Sbjct: 151 VYIKTRDIEQAFEEVETVLTSPELKLFKTALKEVEKVGTSALISLETFANMQNLRANDYL 210
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++ S+ T+ + L ++V P I+ +M
Sbjct: 211 SRRKESVTTYSTIA-VALVLFAAMMVYFAPIYNLIMQSMTQ 250
>gi|229113405|ref|ZP_04242856.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15]
gi|228670019|gb|EEL25411.1| hypothetical protein bcere0018_55780 [Bacillus cereus Rock1-15]
Length = 281
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 20/236 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ PIIF + +I +D L
Sbjct: 59 KKELIQKKLEEAGLDTK--PEEYLKMKVAYPIIFTSVFLICTVFHDYYLFK-------VG 109
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 110 VLISPLLYFYPDYLLKIRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 167
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ L + AEL F NF V T AL Q+ + T SLR
Sbjct: 168 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLR 223
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
++ ++ + R ++ E + K PM + V ++ ++ P ++ I M+
Sbjct: 224 IMDAQIKMMRELKHENYNRLIQNK---PMEMNKFNVALIGCMLTSPMVILIQSLMQ 276
>gi|255327036|ref|ZP_05368112.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
gi|255296253|gb|EET75594.1| type II secretion system protein [Rothia mucilaginosa ATCC 25296]
Length = 284
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 20/243 (8%)
Query: 88 NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ 147
D +V LR AG S + + V + + +L
Sbjct: 26 KPPKPSNDPALVVALRKAGMHS-LTPRTFMWVSVASGV------------STSVLLLMLT 72
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ +L GF AP V +++ + + I + WPDA+D L + +G+S+ +AL ++
Sbjct: 73 QLLPLGLLGLIGGFAAPRVIVNHRARAADARIWQLWPDAVDHLRSAIRAGLSLPEALIQL 132
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT- 266
+ L + + + +AL + G
Sbjct: 133 S---YRGPEELRDAFAHFSRDYRASGEFVPSLNRLKEYLSDPVADTIIEALKIAREVGGS 189
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIID 324
+G L L R +E A + + P +L ++ PA + +
Sbjct: 190 DLGKLLGTLSDFLRENARTRSELLARQSWT-VNAARLSCVAPWFVLCLMATQPAARMVYN 248
Query: 325 TMK 327
+
Sbjct: 249 SFA 251
>gi|300788923|ref|YP_003769214.1| type II secretion system protein [Amycolatopsis mediterranei U32]
gi|299798437|gb|ADJ48812.1| type II secretion system protein [Amycolatopsis mediterranei U32]
Length = 283
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 102/309 (33%), Gaps = 30/309 (9%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ ++I + I V++ R+ V E + ++ + +L +
Sbjct: 5 AVLIVLAITAAI-GVILVVAAFAPTRPRLADVLHETPRGSDGLLDAVVVRADRMKLTAKP 63
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ L G E + + L + +L +
Sbjct: 64 TD-----------------------LALVGRSRESFVVQRVGFLLGGALWIPVLTTVLAL 100
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
P L A + VG+ P V + + V+ +++ A L+ +
Sbjct: 101 VGAAP---PIVLTGAASVGGAVVGWQLPVVMLKSKVKHARAAFSGALAAYCRLVALGRLG 157
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
+ALR A +G ++ + A L F T + +++
Sbjct: 158 DRGPVEALRYPA-MLGTGWAFRRIKLAIDEAVLR-GRMPWAGFAELAEETGVRELKDIGH 215
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + + G SI D+LR + ++L + + ++ ++ +P+ + L I +
Sbjct: 216 IIASAGQDGASIVDTLRAKAAALDEKQLADRKTGSSVRSDRMDMPVALLGL-AFIAFLAF 274
Query: 317 PAILSIIDT 325
P + ++ T
Sbjct: 275 PGLYLMLHT 283
>gi|313824430|gb|EFS62144.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA2]
Length = 147
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
P+AL +L +E+G+ + A+ VAE + G P +E++ + L+
Sbjct: 3 QHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDS 59
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A+ + ++ R+ Q + ++ G I + L ++ + + EKKA G
Sbjct: 60 RAWNDLA---SVEVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKTEKKARKAGV 116
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
P++ LP LV + P I +
Sbjct: 117 DAIGPLVCCHLPAFSLVGVVPIIAGM 142
>gi|207739455|ref|YP_002257848.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
gi|206592831|emb|CAQ59737.1| pilus assembly protein tadb [Ralstonia solanacearum IPO1609]
Length = 319
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 11/209 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ L R + ++F L +I + + + L+ F
Sbjct: 80 WHDALRRADLEPGRRLYVLVFGPLAVIALVAWAVSSLLSAVTAILLYALVAAFLFW---- 135
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ ++ + + + P LD ++ + G ++ A + + PL + LT
Sbjct: 136 ---SRTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLALTT 189
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A + +++ + + L + RYG + + R +
Sbjct: 190 QLQRAGKDLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQ 249
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
E A S +L+ I+ LPV++ II
Sbjct: 250 KELLALSAETRLSA-WILGLLPVVVGGII 277
>gi|314974319|gb|EFT18415.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
gi|314980647|gb|EFT24741.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
gi|315090038|gb|EFT62014.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
gi|315096613|gb|EFT68589.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
gi|327325749|gb|EGE67544.1| membrane associated protein [Propionibacterium acnes HL096PA2]
gi|327330163|gb|EGE71913.1| membrane associated protein [Propionibacterium acnes HL096PA3]
gi|327333257|gb|EGE74978.1| membrane associated protein [Propionibacterium acnes HL097PA1]
gi|327443398|gb|EGE90052.1| hypothetical protein HMPREF9570_02379 [Propionibacterium acnes
HL043PA1]
gi|327447490|gb|EGE94144.1| hypothetical protein HMPREF9571_01040 [Propionibacterium acnes
HL043PA2]
gi|327456789|gb|EGF03444.1| hypothetical protein HMPREF9581_00006 [Propionibacterium acnes
HL087PA3]
gi|328760173|gb|EGF73748.1| membrane associated protein [Propionibacterium acnes HL099PA1]
Length = 297
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V+ + + +
Sbjct: 1 MTITALSLLAGAIVTVGLLVIVAAFRPAPGPDLVAALEVVSGRTSSVAENVDQTRIGRIG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + RL+ +I
Sbjct: 61 RSVTRTFHVSVSPAMRAALRLQG-------------------TTPEAFYGRRLICALIGA 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + + L + + + G+ P+ + A
Sbjct: 102 ILPWLLNAVAIAVGANSPNLLIPSALCVALAGAGWMLPAARLKAAAGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + S + +
Sbjct: 162 IDLVVLERLANETSVDALTNAANM---SDSPLFVQIRQVLNRASLENVDPWNGLDRLAED 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + I+
Sbjct: 219 IKLPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I
Sbjct: 278 A-GSVMLILLGAAALTLITA 296
>gi|21227617|ref|NP_633539.1| transporter [Methanosarcina mazei Go1]
gi|20906004|gb|AAM31211.1| Transporter [Methanosarcina mazei Go1]
Length = 662
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + R I P+ L L +SG+ + +L+ +AE G LS+E+
Sbjct: 433 PFIIFYEIRAWRMRKIDERMPEMLRNLSSMNDSGLLLSNSLKIMAESKMGI---LSKELK 489
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+LS+ + A N + +I+++ + + L + + +SE
Sbjct: 490 KLKEDLSWGTSTSRALMKLENNIRTATSSRILHTVIKANESTSDLKSVLSITAEQVKSEE 549
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ +++++ + + + FF+ + I+ ++
Sbjct: 550 RLK-KERSSEMVVYVVTIYVSFFVFLFIVYVLA 581
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 64/190 (33%), Gaps = 3/190 (1%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ + F + L + + + I+ + F ++ R++ I ++
Sbjct: 78 LSLFVDSTRAGFAEEYLYLLALLVAILSFIISFLIIFGVAYIYPYFQADIRKACIDKSML 137
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFY 243
A+ + + G+SI R ++ +EE+ + ++ + A +
Sbjct: 138 PAVTYMYALTKGGMSIYDVFRSLSRHTH-IFGTSAEEISYIVRDMDYLGKDFITALKEAK 196
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
RT + ++ LI GT I ++ + + M +L V +
Sbjct: 197 ERTPSERFKDFVDGLILVSSSGT-ITGYIKNKSEQYQDMAEMANRNLLKTLDVLAEVYVT 255
Query: 304 IFFLPVLILV 313
+ L ++
Sbjct: 256 VLVAGPLFIM 265
>gi|51891535|ref|YP_074226.1| putative integral membrane protein [Symbiobacterium thermophilum
IAM 14863]
gi|51855224|dbj|BAD39382.1| putative integral membrane protein [Symbiobacterium thermophilum
IAM 14863]
Length = 270
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 76/201 (37%), Gaps = 7/201 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + L ++ G + L ++ +++ +AL L
Sbjct: 41 ALRLVPVAAFALVLLLTGSWLTALISLPAGVLLLATVRDTLARREAQALRDQLQEALLSL 100
Query: 191 LICVESGISIDQALRRVAEDIGGQSVP---LSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+++G S+ +AL+R A ++ L E+ LT E+ A + R
Sbjct: 101 ATSLKAGQSLPRALQRCAVELSRLHPGGGGLIREIELTAREVELGTPVDEALLDLRARVP 160
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
++ + AL+ + R G +I + + + +E E + + K T I+ +
Sbjct: 161 LEELAALVDALVTTRRRGGNIVEVMGNVAQMVADRLAVEREIQVLTAQ-KRTEAAILAMI 219
Query: 308 PVLILVII---GPAILSIIDT 325
P+ I +++ PA L++
Sbjct: 220 PLGIYLVVRVTNPAYLAVFHA 240
>gi|305664070|ref|YP_003860358.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
gi|304378639|gb|ADM28478.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
Length = 596
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 72/226 (31%), Gaps = 2/226 (0%)
Query: 90 KAILVDENIVNKLRAAGFR-SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
+++ AG + + IF I+G + +F + L L
Sbjct: 35 RSLAKSFEFEKLFERAGLNVHPVKYASETIALTIFSAIFSIVGFVLVFLFIPLNIIQLIL 94
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++I + F ++ R++S++ P + + G S+++ + RV+
Sbjct: 95 GLMIAVIIPIMVFVYRLTKPYIMISNRKNSVESELPFFMAYVSTMARGGYSLEKLIERVS 154
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+ + S E + F + A + R+ + R G +
Sbjct: 155 Q-LKIFSGIRLEAQRIVTHMKMFGEDPITALDRVAMNHPSTRFRDVMLGYTTTLRSGGDV 213
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L E R+ E L L V + + + + I
Sbjct: 214 VHYLETRTREVFESRMNEIRALFGRLASYLEVYTVFGVIMAIAVFI 259
>gi|293192038|ref|ZP_06609362.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
gi|292820386|gb|EFF79375.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
Length = 425
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 91/279 (32%), Gaps = 18/279 (6%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ A R + A+SR+ F L V + I + +
Sbjct: 148 LDEWARAPTRWRSLRRAERAPGVAASRVSAASVALACRFSHDLGAPLADVLDAIGSAIDD 207
Query: 105 A----GFRSEYSLNILLVVRLVVPI-IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
A R + L+ R++ + + I + + + + G
Sbjct: 208 AQALEEARRVAAAGPLMSARVLAALPLVGIACALALGASPWQFYMGGTVGRMCAFVGGVA 267
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+ L + R+ A DL+ + G +I +AL +A+ +
Sbjct: 268 WAAGVASCRRILARCRRVEEGIDGALACDLVASALACGAAIPRALDALAD------ASTT 321
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN-ATQALIQSDRYGTSIGDSLRVLVSE 278
E + A L A+E + AL S GT+ L +
Sbjct: 322 EALTWAAASLRLGATWADAWE------DTPEWSHPLRDALEASWTSGTAPETLLARSAAW 375
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
R RL++A+ +A L +L P+ +FFLP + + I P
Sbjct: 376 ERRSRLVDAKAQAEELSVRLVGPLGVFFLPAFLSLGIAP 414
>gi|296109005|ref|YP_003615954.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
gi|295433819|gb|ADG12990.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
Length = 299
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 84/202 (41%), Gaps = 6/202 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ L +I +LL F+ + +L PS+ + ++K ++ P
Sbjct: 32 FLMLAFSVIIPIILSRLLNLSFKSTIIMTLLYFGAALSLPSILYESKMEK----LEENLP 87
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
AL ++++ ++SG SI++AL V + P+ +L I + + + A
Sbjct: 88 KALYIIVLALDSGRSINEALHEVVRANIKEVSPVFARVLYLIEKQKL--SFEDAMTIVST 145
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+R + +I++ ++G ++ ++L+ L RL + + + + ++I
Sbjct: 146 FYDSKILRMLGKIMIENRKFGGNLSETLKTLAKTLEDFRLYKRQLMSVTANSLAMGFIMI 205
Query: 305 FFLPVLILVIIGPAILSIIDTM 326
+ + ++ ++ + T+
Sbjct: 206 CLVVPGVAALLASYLMVLGKTL 227
>gi|254478240|ref|ZP_05091621.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
gi|214035836|gb|EEB76529.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
Length = 301
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/314 (10%), Positives = 97/314 (30%), Gaps = 46/314 (14%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+AV+ ++F ++ + ++ L+ R
Sbjct: 1 MAVSFLFGAAVFMVVVLLYSI-----------------------RENRRLKLKRRLERHL 37
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
K+ + V L++ E + KL+ +G + + +
Sbjct: 38 VTPQKNELSIVDLFGLRSF--TEALDKKLKKSGIKLDAEE---------------VFLWF 80
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+F L F+ + + ++ + L ++R + + D + +L
Sbjct: 81 VLFSVVIALFLSFKGFTLLGLSLPFMLYYLLDYVFEYLGRRRIRKTEEQFRDFVKMLGAY 140
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++ S A + AE++ PL E + + + + A + + ++
Sbjct: 141 LKMVPSFAGAFIKAAEEVES---PLKEHTDRVVRKFELGEDLEEALKEL-KSVESTYIKA 196
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL- 312
++I + R + + + M + ++ K + + + +I+
Sbjct: 197 WADSIIFAVRMKSDLSRVCERTAKKLYERIKMANRVASMTVQAKSLMVSLAGMMAFMIVS 256
Query: 313 -VIIGPAILSIIDT 325
+ + P + T
Sbjct: 257 TMSVSPDFVRAFST 270
>gi|171321819|ref|ZP_02910722.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
gi|171092890|gb|EDT38140.1| type II secretion system protein [Burkholderia ambifaria MEX-5]
Length = 224
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 64/199 (32%), Gaps = 9/199 (4%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+++ + + L VW+++ +Q+R+ I R P L
Sbjct: 1 MLVALAMLVVVASFAGSRGGALACLAALACGGTMLG--VWLASRIQRRRLRIVRQIPSFL 58
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V G S+ A + + PL + L A + +
Sbjct: 59 DGIVRLVTLGNSVPAAFQ---SALLTTEEPLRSCLDHVSRMLRGGVEIDRAMMHIAKIYR 115
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ L S +YG L + R E E A S +L+ ++ L
Sbjct: 116 TEEFELVGSVLRLSVKYGGRADVMLERMAVFMRDLEQAERELTAMSSETRLSA-FVLVML 174
Query: 308 PVL---ILVIIGPAILSII 323
P+ +V+ P L +
Sbjct: 175 PIGIGSFVVMTNPKYLHGM 193
>gi|315650392|ref|ZP_07903463.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
gi|315487319|gb|EFU77630.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
Length = 409
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 8/170 (4%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
Y F L I++ + + ++KR+ + + +PD + L++ +
Sbjct: 215 LVYHLEDSMNFHLIWIMGIIVAILLYLREKNGDRQKLEKRKRELLKDYPDIVSKLIVFIG 274
Query: 196 SGISIDQALRRVAEDIGGQSVPLS-------EEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+G+S+ Q+ + +D ++ EEM ++A L + +++F +
Sbjct: 275 AGLSVRQSWEGIVKDYESENKEKRYAKRYAYEEMSKSLARLKTGTQENIVYKDFGRSCLL 334
Query: 249 DCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
L Q+ + G + + L + ERL A+++ L K
Sbjct: 335 RQYMKLASLLEQNRKSGISGLSTLLNMEAQSAWEERLNLAKREGEELNTK 384
>gi|302864763|ref|YP_003833400.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|315501057|ref|YP_004079944.1| type ii secretion system f domain protein [Micromonospora sp. L5]
gi|302567622|gb|ADL43824.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
gi|315407676|gb|ADU05793.1| Type II secretion system F domain protein [Micromonospora sp. L5]
Length = 287
Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 94/311 (30%), Gaps = 30/311 (9%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
+LA+A+ ++ ++ VV +L + ++ L + + + L
Sbjct: 6 QLAIAVLGGCAVGLGLFLVVREALPATP------ALGPALRRLHQPPGQAPAAGAGPDWL 59
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
L + L + + + L+ ++
Sbjct: 60 G--------------GFARWLRPPHRQLALL------DRTPEQYALSVLLSALVGFATPA 99
Query: 133 IW-IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + P + V A + + + + ++A LDL+
Sbjct: 100 VASAVLFVGGVALPVAVPVVASLGLALGAGLLAHRTVLAKADAARDEFRQAVCTYLDLVA 159
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ + + Q+L R A G E L + + + R + +
Sbjct: 160 LQLSAAHGPVQSLERAAAVCDGWVFDRIREALRLAQLQ--MHSPWDELQELAERIGIPEL 217
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ + S G + ++LR R + + +A + KL +P + VL+
Sbjct: 218 GDVGAIMRSSGSEGAQVHETLRSRADSLRDQIRTDNLARAEGVTSKLDIPGSLLVF-VLL 276
Query: 312 LVIIGPAILSI 322
+ P + +
Sbjct: 277 GFAVYPFLARL 287
>gi|117620900|ref|YP_855995.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562307|gb|ABK39255.1| Flp pilus assembly protein TadB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 294
Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 4/149 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
L Q+ + P+ +D ++ + G + VA G +S
Sbjct: 108 YQQLQQRALEQFRTRLPEVIDGMIRALRVGAPLADIFLLVARQQRGL---MSRLFAQMHD 164
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
EL + R + + T L G + + L LV R+ + + A
Sbjct: 165 ELQVGQPVAQVMQQAAGRVAVAEFQFLTIVLSLQQETGGRLSEVLAQLVETLRARQTLAA 224
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + + ++ LPV+IL+++
Sbjct: 225 SIQTITAESR-NAAKVLAALPVIILLVLF 252
>gi|269986709|gb|EEZ92989.1| type II secretion system protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 348
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/199 (15%), Positives = 68/199 (34%), Gaps = 4/199 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I L++G + + +GA + I + G +S + I++ PD
Sbjct: 49 ILLMIGAVLGAILVFYFLHSPLYALGAAVGIFFGGIILLRSMLSMFADSVAAKIEKVLPD 108
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L L+ + +G+ + + + + L+ + E N A +
Sbjct: 109 MLLLMAANLRAGMIPENSFIAS---MKPEFGKLNYLLNKAAIETQAGKNFSEALLEMNDM 165
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + +++ + + + R G + L L S + + +A I
Sbjct: 166 TNSEFFKDSVRIISEGIRSGAELHLILENLASNLLRNESIRNDMRAQVKS-YSLFIFIAA 224
Query: 306 FLPVLILVIIGPAILSIID 324
L +L + ++ I+D
Sbjct: 225 TLAAPLLYGVSSFLIGILD 243
>gi|326390769|ref|ZP_08212322.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
gi|325993163|gb|EGD51602.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
Length = 255
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/255 (17%), Positives = 101/255 (39%), Gaps = 18/255 (7%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + + + V K K +L I +KL+AAG + ++ R + +
Sbjct: 16 RIKPADEISKIVGKTVKKDVLQ--KINDKLKAAGNPLGLTAETYILARA--GLFLFSIAY 71
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ G + L+ +GF ++IS++ + RQ +R P+ +DL +
Sbjct: 72 AYLTGMSGIQ----------AALLIILGFFGLDIYISSVKKDRQEKFRREMPEIVDLFEL 121
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ + ++ A+ Q+ + + AE ++VA + F N +
Sbjct: 122 GAAADVPLEDIFLITAQS--AQAKEVRNALTKLAAEYIMTKEKEVALKRFINEVNLPEAN 179
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL+Q +R G ++ + L L + + + ++ S+ K+ + F + ++
Sbjct: 180 VLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIARQDKSMEYKVLAA-VFFLMASIVT 237
Query: 313 VIIGPAILSIIDTMK 327
+ I +I ++
Sbjct: 238 LYIYSYFTNIQGGLR 252
>gi|312199822|ref|YP_004019883.1| type II secretion system F [Frankia sp. EuI1c]
gi|311231158|gb|ADP84013.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
Length = 285
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 5/212 (2%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+R + + + + + I + + P
Sbjct: 31 GWRRSTTELLAQAGVRGLGPGQFVAVSVAIGVVVGFVIFAVTATWSLGFAFFVFAAFLPR 90
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
++ + R + ++ WPD +D L V +G+S+ + L V + PL
Sbjct: 91 TLVARRRRARMADLRGMWPDVVDNLASAVRAGMSLPEGLAAVGQ---RGPAPLRGAFTRF 147
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERL 284
E + + + ++L + G +G LR L + R +
Sbjct: 148 GEEYRASGSFSSCLDKLADELADPVADRIIESLRLAREVGGTDLGRLLRTLSTFLREDAR 207
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
AE + + + P ++L+++
Sbjct: 208 TRAELETRQSWT-VNAARLALAAPWVVLLLLA 238
>gi|297161946|gb|ADI11658.1| type II secretion system protein [Streptomyces bingchenggensis
BCW-1]
Length = 299
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 17/290 (5%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + AV L+ L + ++ + S
Sbjct: 1 MIIIVLGAVFGVGLVVLAYGLLPPRPALADILATLD---------SPPPPPEVVTSEAEE 51
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL--G 131
+ + L L ++ L G ++ L + L+L
Sbjct: 52 SEWATRLGRRAVPLVRALGFPTASLRADLAVCG----TDVDKHLAGKATCAAAGLLLPWA 107
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + +E + + + + V F P + + +R+ ++ LDL
Sbjct: 108 ATVLVRFGAGVEAGWWMPLAGSLATAVVLFFVPDMAVRKKAAERRRQMRHTLTLILDLTA 167
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
I + G + QAL A+ G + L + + ++ +
Sbjct: 168 ISLAGGAGVQQALADAAQAPQGWAAAKLRHALHVAQLTR--TSPWQHLADLGRHLKVSDL 225
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
L + G + SL R +L EA+ A + ++++P
Sbjct: 226 SELAATLNLAGAEGAKVRASLAAKARAMRRRQLSEADGAAQAATEQMSLP 275
>gi|76802194|ref|YP_327202.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76558059|emb|CAI49645.1| transmembrane protein (homolog 1 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 672
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/314 (14%), Positives = 95/314 (30%), Gaps = 20/314 (6%)
Query: 20 TAVSIFSLIYAVVIPSLGS-GELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ V P +G + R+ L + S
Sbjct: 7 LVAAVGVTAVLVAAPFIGRIDTMVSRLA------FRLFDGRSISAPPQRTKLLRGAAIGT 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
R + K + AG + +V P + +L ++
Sbjct: 61 PYREYATKTYFYIVFAAAVGAVFGVYAG------AGVFALVETYGPGVPTVLPTVFGLDG 114
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+L + + G + A S RQ I + P + G+
Sbjct: 115 TRLALLLLTSGLVGSLAAGGA-YAARWRLPSIRADARQRQIDASLPRMVAFTYALTRGGM 173
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQA 257
S LR ++++ + E+ + + + + A ++ +T + ++
Sbjct: 174 SFPDVLRTLSQN-EDVFGEGAAEIGVVVRRMDLFNVDLVTAVQDISQQTPSEQFAQFSEN 232
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEK----KAASLGPKLTVPMIIFFLPVLILV 313
L+ + G ++ LR R E + ++ A + +TV + V IL+
Sbjct: 233 LVSVLQSGQNVSTFLREQYERYRDEAEEQQKEILELLATAAEVYVTVIVAGMLFLVTILL 292
Query: 314 IIGPAILSIIDTMK 327
IIG + + M+
Sbjct: 293 IIGLTVGETLFIMQ 306
>gi|83747914|ref|ZP_00944946.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
UW551]
gi|83725447|gb|EAP72593.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN: TadB2 [Ralstonia solanacearum
UW551]
Length = 308
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 71/209 (33%), Gaps = 11/209 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ L R + ++F L +I + + + L+ F
Sbjct: 69 WHDALRRADLEPGRRLYVLVFGPLAVIALVAWAVSSLLSAVTAILLYALVAAFLFW---- 124
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ ++ + + + P LD ++ + G ++ A + + PL + LT
Sbjct: 125 ---SRTRRMKERLMQQLPGFLDGVVRLMSIGSAVPAAFQAAS---ANTEPPLRTCLALTT 178
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ A + +++ + + L + RYG + + R +
Sbjct: 179 QLQRAGKDLDAAVLAVGQQYRVNELVLLSSVLRLALRYGGRADIVMERTAAFMRDREQAQ 238
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVII 315
E A S +L+ I+ LPV++ II
Sbjct: 239 KELLALSAETRLSA-WILGLLPVVVGGII 266
>gi|226309726|ref|YP_002769620.1| hypothetical protein BBR47_01390 [Brevibacillus brevis NBRC 100599]
gi|226092674|dbj|BAH41116.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 298
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/203 (13%), Positives = 59/203 (29%), Gaps = 2/203 (0%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
L R + + + + + G +S
Sbjct: 52 ERLAKSRSGWGVNQYVTLSFLLGIASFGVSSQILQSWWMALPALLAGILFTERLVSVWGA 111
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R+ + A+ L+ + + S A +VA + L EE + L
Sbjct: 112 RRKEDFEAGNVKAIRLMASSLRTSPSYLHAFEQVATSPFLSEIVL-EEYRRIVELLRAQV 170
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ F+ RT V+ + G + +L + S R +KAA
Sbjct: 171 PLEHVMNRFFERTGSADVKYLATIVHIQREMGGDMAKTLDLAASSILRRRQSLRRQKAAM 230
Query: 294 LGPKLTVPMIIFFLPVLILVIIG 316
V + + +P + ++ +
Sbjct: 231 AQIVAQVNL-LSVMPFVFVIALY 252
>gi|111026115|ref|YP_708398.1| hypothetical protein RHA1_ro10047 [Rhodococcus jostii RHA1]
gi|110824958|gb|ABH00240.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 299
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 3/184 (1%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ + + + I ++ F P + I ++ +A +DL+ +C
Sbjct: 113 LVLTAFGVGLGWSIPAILSIATAFLLFLIPDIEIRRRATAARAEFAQALSSYIDLVALCR 172
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
GI Q+L R A+ +G V L + L A A + + +
Sbjct: 173 RGGIGTTQSLERAAQ-VGDSWVFLRLDEELYEAG-RSGEAPWNALTRVSQELGLTELGDL 230
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + G S+ SLR + RS + + AA KL +P+ + I+++
Sbjct: 231 ADIMNMTGDKGASVYASLRAKAAGLRSAQASAEQGAAAEATEKLAMPL-AGLAGLFIMLL 289
Query: 315 IGPA 318
+ PA
Sbjct: 290 LIPA 293
>gi|257053921|ref|YP_003131754.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
gi|256692684|gb|ACV13021.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
Length = 678
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/204 (16%), Positives = 79/204 (38%), Gaps = 8/204 (3%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF--CAPSVWISN 170
+L V + + ++ L+L ++ + L G + + P
Sbjct: 392 PPYVLAVTIPITLVALVLAVLMGWAPTSLDGMIADPLQGTFFWLYVPAYINFIPLAIFHE 451
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + SI + L L E+G+++ ++L VA S L++E + ++
Sbjct: 452 WNVQYRHSIIGKLSENLRKLSSANETGMTLLESLNIVAR---TSSGRLADEFSIMHRKVQ 508
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ N + A F N+ + + + + ++ I D L + ++ ++ ++K
Sbjct: 509 YGTNLKQALREFNNKYHVPRLSRTVKLISEAQEASNQIQDVLSTAAQASENQDDIDRDRK 568
Query: 291 AASLGPKLTVPMIIFFLPVLILVI 314
+ ++ V +II L+ VI
Sbjct: 569 SR---TRMQVVIIIMTFLTLLGVI 589
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 10/195 (5%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYD----------KLLEYPFQLRVGAVILIGYVG 160
+ + +LL LV ++ + G+ KL + + VG
Sbjct: 72 WLVGMLLGYLLVATVLAGQVPSFLGLGFPKSVLPVIQALKLPFLMIVSGLLFGTIGFAVG 131
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
F + R+ I DA+ + G++ L +A E
Sbjct: 132 FGSLVSIPYFRASARERQINVMLSDAVSFMYALSVGGLNQLDILEAIAAADDTYGEVAKE 191
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + F + + A N +T D + ++ G + L ++
Sbjct: 192 FQSIVLETTYFDTDYRTAIRNQAIQTPSDELSQFLTDMLSIVDSGGDMTSFLEDQKNKYM 251
Query: 281 SERLMEAEKKAASLG 295
E+ +L
Sbjct: 252 RTSKQTQERMLETLE 266
>gi|309810754|ref|ZP_07704561.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
gi|308435291|gb|EFP59116.1| type II secretion system F domain protein [Dermacoccus sp.
Ellin185]
Length = 290
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 76/231 (32%), Gaps = 17/231 (7%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S + L R S L+ + L +G + + L+ L
Sbjct: 6 SAAAVGTALLLMWRAMTSPAPPRPLHGLRRSRRYAAVRELLDQSGLV-TWRVRTLVAACL 64
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ LG + +++ VG AP+ ++ + +
Sbjct: 65 GAATVAFCLGFVITGV------------PALAVVLACVGGWAPAAFVRGRATSLRRRRRE 112
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
AWPDA+D + V +G+SI +ALR+++ L E+ + + +
Sbjct: 113 AWPDAVDHVASAVRAGLSIPEALRQLSLH---GPEVLREDFAAFARHDAAHGRFDDSLDV 169
Query: 242 FYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKA 291
R ++L + G +G LR L S R + AE A
Sbjct: 170 LKARLADPAADRLIESLRLARNVGGSDVGRLLRTLSSFLREDASTRAELAA 220
>gi|282163998|ref|YP_003356383.1| putative type II secretion system protein [Methanocella paludicola
SANAE]
gi|282156312|dbj|BAI61400.1| putative bacterial type II secretion system protein [Methanocella
paludicola SANAE]
Length = 678
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 65/185 (35%), Gaps = 4/185 (2%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+L P +++ + P +R+ I PD L L E+G+
Sbjct: 418 PLVLYGPIIGYFDDILIFIMLILMIPLSVFFENKIRRERKISAEMPDFLKKLASTNETGM 477
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++ Q++ ++ +S E+ + + + A + F N + +
Sbjct: 478 TLTQSIALISN---DNFGTISSEVKKINRNIQWGIDVNTALKMFGNSLNTALSQRVITLI 534
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
++ I D L V ++ + + E+ L + + I F + + + + +
Sbjct: 535 TKASESSGDIRDVLNVAANDAKMGERIRRERSDGML-IYVAIIFITFCVFIYCVYTLSSS 593
Query: 319 ILSII 323
+ ++
Sbjct: 594 FIPVM 598
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 87/254 (34%), Gaps = 29/254 (11%)
Query: 98 IVNKLRAAGFRSEYSLN--ILLVVRLVVPIIFLILGIIWIFGYDKLLE------------ 143
+ LR A Y + + +V +V I ++G++ F +L
Sbjct: 26 LQKSLRQAHMAQSYEVYASVAYLVSAIVGFIGALIGVVIAFFILNVLNTKGNFTNIHMPE 85
Query: 144 ------------YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ YV + + + R+S I + P A+ +
Sbjct: 86 SLSWIAPFTDIIVIILGMSIMAVFCYYVTYTVVMLIPAINASDRKSKINKQIPYAVTFMY 145
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDC 250
+ G+ I LR + +S E+ + I ++ + + + A N N+T D
Sbjct: 146 ALSKGGMDIIGILRAL-NSAESTYGDISREIGIIIRDMDYFGSDLRTAIINCTNQTSSDL 204
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+++ L+ G + L + + L + + LG + L
Sbjct: 205 LQDLLTNLLSVIDSGGDVTQYLYGKTDQYQQRLLQDQKSFLEILGLIAESYVTALVAAPL 264
Query: 311 ILVIIGPAILSIID 324
++I+ ++++I++
Sbjct: 265 FIIIMQ-SVMTIMN 277
>gi|262200535|ref|YP_003271743.1| type II secretion system F domain-containing protein [Gordonia
bronchialis DSM 43247]
gi|262083882|gb|ACY19850.1| Type II secretion system F domain protein [Gordonia bronchialis DSM
43247]
Length = 202
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 8/145 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A DL +C+ +G+ + A L+ + L + A+
Sbjct: 56 AFDLFAVCLRAGLPVG---TAAATVAASAPASLAGPLTEVADLLGLGADPDTAWSVLTAS 112
Query: 246 T-----QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ +S R G+S+ L L ETR + A A G ++
Sbjct: 113 DTPVVGAQPHLDALASMARRSARAGSSLAAGLAELADETRRQAHDTATAAAERAGVAISG 172
Query: 301 PMIIFFLPVLILVIIGPAILSIIDT 325
P+ + FLP + + I P ++ + T
Sbjct: 173 PLGLCFLPAFVCLGIVPVVIGLAST 197
>gi|187926430|ref|YP_001892775.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|241665917|ref|YP_002984276.1| type II secretion system protein [Ralstonia pickettii 12D]
gi|187728184|gb|ACD29348.1| type II secretion system protein [Ralstonia pickettii 12J]
gi|240867944|gb|ACS65604.1| type II secretion system protein [Ralstonia pickettii 12D]
Length = 308
Score = 60.6 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 65/196 (33%), Gaps = 7/196 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ L + + + + + N +K + + P LD +
Sbjct: 86 VLLIGPALMITLAVWAVSSMLSALTALALYVVIVAFLFWNRTRKMNERLLQQLPGFLDGV 145
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ + G ++ A + + PL + + A + +++
Sbjct: 146 VRLMSIGSAVPAAFQAAS---ANTEQPLRNCLTAITQMQRAGKDLDAAVLTVGRQYRVNE 202
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + L + RYG + + R + + E A S +L+ II LPV+
Sbjct: 203 LILLSSVLRLALRYGGRADIVMERTAAFMRDRQQAQRELFALSAETRLSA-WIIGLLPVV 261
Query: 311 ---ILVIIGPAILSII 323
++++ A + +
Sbjct: 262 VGGVIIMFNAAYIMSM 277
>gi|11498266|ref|NP_069492.1| hypothetical protein AF0658 [Archaeoglobus fulgidus DSM 4304]
gi|2649961|gb|AAB90583.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 614
Score = 60.6 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/262 (14%), Positives = 88/262 (33%), Gaps = 7/262 (2%)
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIV----NKLRAAGFRSEYSLN-ILLVVRL 121
+ + R + +R L + + + L A F S+ +L+ L
Sbjct: 5 TPLALRRFYRKRYIRRPGSYSELSSAIESARLRMTVPELLSIALFYPLLSVIPGILLGFL 64
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
V +I +I ++ L G +L + + R+ I
Sbjct: 65 VSEVINPGGPLIIRNTVIPYWQFELALITGFAVLAFGFTRYLILSYPFYITNVRRGKIDS 124
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFE 240
+ P A++++L + G+ + R VAE+ +S E + + + A +
Sbjct: 125 SLPHAVNMMLGMAKGGVPLISIFRFVAEN-REIFGEISREFDKIVTLVEIFGYDMITAMK 183
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ T + ++ + I G + + LR + +ER +L +
Sbjct: 184 YVADTTPSEKLKVFLENFINVYEGGGDVVEYLRAKSEQLLTERETYYTLFFETLQVYAEI 243
Query: 301 PMIIFFLPVLILVIIGPAILSI 322
+ +F + L +I+ +
Sbjct: 244 YLALFIVAPLFFLIVLVVFQMV 265
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 77/199 (38%), Gaps = 10/199 (5%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + + + ++ + +I + PS+ + + +++ P+ +
Sbjct: 356 ALSFYLIVPAVAVFIYLYGKVDLDLLIFVTLSMVILPSILFIEYKNRLLTKMEKELPEFM 415
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L E+G+++ +ALR ++E + L E+ E+ + A E +R +
Sbjct: 416 KQLASLNEAGLNVVEALRHLSE---SELGVLGREIRKIKREVEWGELITSALEKIESRVR 472
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
V A L+++ SI D+L + E + KA +++ II +L
Sbjct: 473 SQIVAKAITLLVKAIESTPSIRDALNTASMYSELEVEVRDRIKAQ-----MSMYTIIIYL 527
Query: 308 PVLILVIIGPAILSIIDTM 326
V + A + I + +
Sbjct: 528 --AFAVFLYTAYILIQNML 544
>gi|330819178|ref|YP_004348040.1| type II secretion system protein [Burkholderia gladioli BSR3]
gi|327371173|gb|AEA62528.1| type II secretion system protein [Burkholderia gladioli BSR3]
Length = 282
Score = 60.6 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 75/175 (42%), Gaps = 4/175 (2%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
Y V + AP ++ + ++R + ++R PD L + + +G S
Sbjct: 70 FAYFLFDSVLLAGIALVGALMAPRRVLAIMRKRRIAMLERQLPDVLLMTAGALRAGASFA 129
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ V + P+S E+ L + EL + +A +N R + T A+ S
Sbjct: 130 VAMESV---VSEAPAPISGELELLMRELRLGIDLDIAMQNIERRIPVPDFLMVTAAVTIS 186
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G ++ ++L + ++ ME + +A + ++ +++ LP+ ++V++
Sbjct: 187 REVGGNLAEALESVARTLGAKLQMEGKIRALTSQGRMQG-IVMTLLPLGLMVVLN 240
>gi|325288256|ref|YP_004264437.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
8271]
gi|324963657|gb|ADY54436.1| hypothetical protein Sgly_0062 [Syntrophobotulus glycolicus DSM
8271]
Length = 290
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 113/312 (36%), Gaps = 25/312 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+T + +F ++ + + + + L R+ ++A ++ +L + + + + LR
Sbjct: 1 MTIYIFLFGVLLSAGLFFITADLL--RLPTLATQKAMLSAGKQAKAKPKATDALLRNAAV 58
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + + N L AAG L + + + I I+ + +
Sbjct: 59 Q-----LSRYLRMDEYKKSRMENVLSAAGLSDSPELFTAMAIVKAMSIALCIIPCLIVLP 113
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
V+ + + + ++ I++ P + + +++
Sbjct: 114 LLTP----------IVLFAAVLVYFKEIRKADEALAAKRGKIEQELPRFVATITQELKAS 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ L + G S E+ + A++ + + A F +R + + T+
Sbjct: 164 RDVLSMLENFKRNAGE---DFSAELDILTADMRS-SSYEAALTRFESRFNSPMLSDITRG 219
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVI 314
LI R G G ++L + + L + +A + PK+ + M++ FL + +I
Sbjct: 220 LIGVLR-GDDGGMYFQMLAHDMKQLELQRLKAQAMKIPPKIRVFSFAMLMCFLMTYMAII 278
Query: 315 IGPAILSIIDTM 326
+ I S+
Sbjct: 279 VYEIITSLGGMF 290
>gi|283457407|ref|YP_003361983.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
gi|283133398|dbj|BAI64163.1| Flp pilus assembly protein TadC [Rothia mucilaginosa DY-18]
Length = 480
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 10/141 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+LL + G++ AL +AE + S + L N A+
Sbjct: 348 VLELLAAQLRVGLAPLAALGTLAEALN------SRALHTVCQRLQMGSNWGSAWSGSAAG 401
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T AL + G L L R AE+ A L L VP+ +
Sbjct: 402 T----FGELRDALAPAYTGGAPSTALLLSLADAHRLSERRAAERAAGKLSVALVVPLGLC 457
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP I + I P I+S++ T+
Sbjct: 458 SLPAFICLGIVPIIISLLPTL 478
>gi|315606115|ref|ZP_07881146.1| type II secretion system protein [Actinomyces sp. oral taxon 180
str. F0310]
gi|315312397|gb|EFU60483.1| type II secretion system protein [Actinomyces sp. oral taxon 180
str. F0310]
Length = 292
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 4/168 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ + + + +++ P W+ + V +++ AWP+ +
Sbjct: 58 LVALSLVVGAVVWVAILALTGAWPVALIVALGVAFLPYAWVVSRVAAHAKTVRAAWPEVV 117
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V +G S+ Q L E PL + S A + + +
Sbjct: 118 DAMVSGVRAGTSLPQVL---CELADEGPQPLRFAFDAFSRDYSANGRFASALDRMKDEVR 174
Query: 248 MDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASL 294
+AL + G + L+ L S R + + E +A
Sbjct: 175 DPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQS 222
>gi|124027109|ref|YP_001012429.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456]
gi|123977803|gb|ABM80084.1| hypothetical protein Hbut_0212 [Hyperthermus butylicus DSM 5456]
Length = 283
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 68/207 (32%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
E + + L + V + IL + ++ G ++ V
Sbjct: 32 ERYVVLFLAATVAVVFLAGILPAVMLYIQGFPAIIAAVFGAGGALIAFIVMLAIYIALPM 91
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ R ++ + L + +G + + R+ + + S E+ ++ +
Sbjct: 92 LAARNRGQKLEARFLLFAQALATRLLAGAGLIETFERMYREDLRELKEFSIELEYIVSGI 151
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
E T + + L + R G+ + + + +SE S + E ++
Sbjct: 152 RAGIPVDRVLEEASKLTPSPSLHSLLAGLSAAARTGSGLREVVDAAISEYLSTQETEIDR 211
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIG 316
SLG L M + + + ++G
Sbjct: 212 LTNSLGALLEFYMAAAVMLPVSIGVVG 238
>gi|307328261|ref|ZP_07607439.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886095|gb|EFN17103.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 272
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 17/243 (6%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
E + A G + ++ + VG
Sbjct: 31 RERGARRRLTALLPGAKDRRPRRARPWRRRRAGATAGALPLWAAPCGAVTIAVVLVGGPP 90
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRA-----------WPDALDLLLICVESGISIDQA 203
A +W ++ + P A DLL C+ +G +A
Sbjct: 91 GWVLGLAVACGLWWWQRHRRATAGRSGHDRRLEALAARQIPLAADLLTACLAAGAGPRKA 150
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
V +GG P+ E + T AEL A+ + + +AL ++
Sbjct: 151 AEAVGGSLGG---PVGERLAQTAAELRLGAEPAHAWGRIG---ALPGAQGLARALERAGT 204
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G + + L +E R+E+ A K+A G + P+ FLP +LV + P ++ +
Sbjct: 205 TGAPAVEPVSRLAAECRAEQGRAAMKRADRTGVLVNAPLAGCFLPAFLLVGLAPVMIGLA 264
Query: 324 DTM 326
+
Sbjct: 265 RGL 267
>gi|225375663|ref|ZP_03752884.1| hypothetical protein ROSEINA2194_01288 [Roseburia inulinivorans DSM
16841]
gi|225212520|gb|EEG94874.1| hypothetical protein ROSEINA2194_01288 [Roseburia inulinivorans DSM
16841]
Length = 256
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/268 (17%), Positives = 97/268 (36%), Gaps = 19/268 (7%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
S +K+ + ++ K + N L AAG + +
Sbjct: 4 SGKKEKKLQKTLDAFYMDGAAYLGKYIGMNAYKKSRMQNVLNAAGLKMTPETYMAYAYLK 63
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I LIL + +F L ++L+G + + + LV++++ I+
Sbjct: 64 AGSIFLLILPALHVF----------PLLAIMLVLLGVMVYYKETRKAEELVREKREQIEG 113
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
+ + +++ + L E+ G +E+ + A++ + + A
Sbjct: 114 ELYRFVSTITQELKNSRDVLSMLEHYKENAGE---MFQKELDIVCADMRS-SSYEAALTR 169
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL--- 298
F R + + + LI R G ++L + + L + KAA + PK+
Sbjct: 170 FEARLNSPQLSDVVRGLIGVLR-GDDGAVYFQMLTHDFKQAELQRLKAKAAKIPPKIRVF 228
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ M++ FL IIG I+ + T+
Sbjct: 229 SFAMLLCFLATYFA-IIGYEIIKSMGTL 255
>gi|332982951|ref|YP_004464392.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700629|gb|AEE97570.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 279
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/211 (9%), Positives = 66/211 (31%), Gaps = 3/211 (1%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
R V I +L + + +++ + V +
Sbjct: 68 FTARNVYEYIAALLTYSAAAVLLMVYGIISGAGLIGPVMMTVAVMAYTIGRYRSAVSTYK 127
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
S + P +D ++ + + ++Q + +A +S ++ + L + +
Sbjct: 128 SKFESQLPAVIDSMIQGLAIEMPVEQVISYIA---DTKSGVVTPFLKELRDMLFTGSSLE 184
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A +T + L + L + + + KA ++
Sbjct: 185 SALTEVSAKTLSPDFERVARILSFRSETTAEMIHGLEQIRDNMETRLETQIMAKANNMEN 244
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ +P++ ++ +++I+ P + ++
Sbjct: 245 TMILPIMAGYVLPYLVIILYPMLSDLLKFFS 275
>gi|307295328|ref|ZP_07575167.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
gi|306878831|gb|EFN10050.1| Type II secretion system F domain protein [Sphingobium
chlorophenolicum L-1]
Length = 297
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 70/209 (33%), Gaps = 6/209 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + V IL I L + A+++ +G W
Sbjct: 54 PEAVAPLLARAQVEVTARGLGILAGILALAAVFALLAAGPVAALALVVGVPLGLLG---W 110
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ Q R ++ A P +D + G S+ QAL R + + +
Sbjct: 111 VRRRAQVRVEALIEALPYYIDAVRQMQAVGNSLAQALDRA---LADAPGVVWGFIAPVAR 167
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L A + R ++ + A+ + RYG SI L L + R ++
Sbjct: 168 RLELGAPVADAMQMLAERLRVPEISMLAAAIRTNMRYGGSISAVLLNLANILRERIRIKR 227
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIG 316
E KAA +++ ++I + +++
Sbjct: 228 ELKAAISEARISGRVLIVMPLAAMALLVA 256
>gi|169834895|ref|YP_001715935.1| type II secretion system protein F [Clostridium botulinum A3 str.
Loch Maree]
gi|169409002|gb|ACA57412.1| bacterial type II secretion system protein F domain [Clostridium
botulinum A3 str. Loch Maree]
Length = 250
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 3/190 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
I+ I + ++LIG + K P L
Sbjct: 53 AIVWGILSIILLLAFLNRSNFKALIILLIGTNILLYAKIKDPIDKYKESFLKDNELPAVL 112
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ L+ ++ G+ + L ++ + G + L + L + +++ + A ++
Sbjct: 113 ETLIQGLQIGMPVYSILLYISNNKKGNTANL---INLCVTKVNSGMDINKALREVAEKSL 169
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
D + ++DR ++ L L + ER+ + A L L PM+I +
Sbjct: 170 NDYFLRMALIIEKTDRSVMNLDKQLEYLQQDMEEERINIKTEHADKLDNALFFPMLIGYF 229
Query: 308 PVLILVIIGP 317
LI++I+ P
Sbjct: 230 IPLIIMILVP 239
>gi|297568750|ref|YP_003690094.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924665|gb|ADH85475.1| Type II secretion system F domain protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 305
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 4/163 (2%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+L+ G A + Q+R+ + P +D LL V +G ++D AL
Sbjct: 98 LLFGPAGAVLLPVGGGAAAGGLLYYRSQRRRRLMVAQIPTFIDQLLRAVAAGHTLDAALL 157
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+PL E + E+ A ++ +R A+ + RYG
Sbjct: 158 TAT---ADSRLPLGEVLEQVTREIKLGGEIDTALSEAIRLYDLEELRLLALAIRVNRRYG 214
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+SI + LR LV+ + E E +A + +LT ++ +P
Sbjct: 215 SSIQELLRSLVTLIQQEETSRQEFRALTGESRLTA-WVLGLMP 256
>gi|297543560|ref|YP_003675862.1| Type II secretion system F domain-containing protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296841335|gb|ADH59851.1| Type II secretion system F domain protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 274
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/255 (17%), Positives = 101/255 (39%), Gaps = 18/255 (7%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R + + + V K K IL I +KL+AAG + ++ R + +
Sbjct: 35 RIKPADEISKIVGKTVRKDILQ--KINDKLKAAGNPLGLTAETYILARA--GLFLFSIAY 90
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ G + +L+ +GF ++IS++ + RQ +R P+ +DL +
Sbjct: 91 AYLTGMSGIQ----------AVLLVMLGFFGLDIYISSVKKDRQEKFRREMPEIVDLFEL 140
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ + ++ A+ Q+ + + AE ++ + F N +
Sbjct: 141 GAAADVPLEDIFLITAQS--AQAKEVRNALTKLAAEYIMTREKEGCLKRFCNEVNLPEAN 198
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
AL+Q +R G ++ + L VL S + + ++ ++ K+ F + ++
Sbjct: 199 ILAMALLQGERTGRTL-EILSVLSSSLFNTAAAKIARQDKAMEYKVLAAT-FFLMASIVT 256
Query: 313 VIIGPAILSIIDTMK 327
+ + P +I ++
Sbjct: 257 LYMYPYFTNIQGGLR 271
>gi|283778972|ref|YP_003369727.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283437425|gb|ADB15867.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 289
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 66/186 (35%), Gaps = 3/186 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I+ + ++ + I G + + + L + + ++R DA+D
Sbjct: 64 IVPYLLGVVLGLIIWLVVGFSLTLSIAFGLIVAMMSAEVEAYLATMKSAKLERQLADAID 123
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L++ + +G + A+ A I S PL ++ +A + + Q F + R +
Sbjct: 124 LMIGALGAGTGVTSAM---AAAIEESSYPLKGQLEDLLARIRLGDDPQAVFRSLSQRIPL 180
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + L G S+ +L R + ++ +++ I+
Sbjct: 181 ETFLLFSSTLAVHWEVGGSLAPTLASAGRTIRDRIEIGRRIQSNIAQSQVSTVFILLLTY 240
Query: 309 VLILVI 314
+ V+
Sbjct: 241 FIAAVV 246
>gi|330830428|ref|YP_004393380.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
gi|328805564|gb|AEB50763.1| Flp pilus assembly protein TadB [Aeromonas veronii B565]
Length = 294
Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 4/140 (2%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P+ +D ++ + G + ++VA G +S EL
Sbjct: 117 EQFRTGLPEVIDGMIRALRVGAPLADIFQQVARQQRGL---MSRLFAQMHDELQVGQPVA 173
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
NR + + T L G + D L LV R+ + + A + +
Sbjct: 174 QVMRQAANRVTVAEFQFLTIVLSLQQETGGRLSDVLAQLVETLRARQTLAASIQTITAES 233
Query: 297 KLTVPMIIFFLPVLILVIIG 316
+ + ++ LPV+IL+++
Sbjct: 234 RNSAK-VLAALPVIILLVLF 252
>gi|167767551|ref|ZP_02439604.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
gi|167710843|gb|EDS21422.1| hypothetical protein CLOSS21_02070 [Clostridium sp. SS2/1]
Length = 445
Score = 59.8 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 10/165 (6%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD--ALDLLLICVESGISIDQAL 204
Q+ + I + F Q+ Q+ + ++ L++ + +G+S+ AL
Sbjct: 260 QIPAILFLGIAVIIFFWYHENEKYKEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAAL 319
Query: 205 RRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
VA + + + E++ T ++SF + AF + + + +
Sbjct: 320 EAVATEYEKEQRRGNKKEIFVYEQIKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVL 379
Query: 258 LIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
L+QS G T + L+ E+ A++K KL P
Sbjct: 380 LVQSITRGSTDLFLRLKEEEEGAFFEKKEHAKRKGEQASTKLLAP 424
>gi|317498623|ref|ZP_07956916.1| bacterial type II secretion system protein F domain-containing
protein [Lachnospiraceae bacterium 5_1_63FAA]
gi|316894110|gb|EFV16299.1| bacterial type II secretion system protein F domain-containing
protein [Lachnospiraceae bacterium 5_1_63FAA]
Length = 434
Score = 59.8 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 10/165 (6%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD--ALDLLLICVESGISIDQAL 204
Q+ + I + F Q+ Q+ + ++ L++ + +G+S+ AL
Sbjct: 249 QIPAILFLGIAVIIFFWYHENEKYKEQRIQTLEQSMVEYPQIIEHLILFLGTGMSVVAAL 308
Query: 205 RRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
VA + + + E++ T ++SF + AF + + + +
Sbjct: 309 EAVATEYEKEQRRGNKKEIFVYEQIKKTCRQISFGVPQTKAFGEMGKKIGLSSYQKLSVL 368
Query: 258 LIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
L+QS G T + L+ E+ A++K KL P
Sbjct: 369 LVQSITRGSTDLFLRLKEEEEGAFFEKKEHAKRKGEQASTKLLAP 413
>gi|307354354|ref|YP_003895405.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157587|gb|ADN36967.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 615
Score = 59.8 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/252 (13%), Positives = 81/252 (32%), Gaps = 8/252 (3%)
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
+ L +F+ ++ +L +I ++ + + ++ +
Sbjct: 8 RNKEGSEAEEKQDFLDSFLNNKQMELLLRSAHIQTQVGQ----YMMASVLFSILPFFAMM 63
Query: 126 IFLILGIIWIFGYDKLLEYP-FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +L ++ + + P + +G +LI + F + R++ I P
Sbjct: 64 MIGVLFYVFDINIELIPGVPDIAVLMGGAVLISLIVFLGMYFYPQLEASGRKNRIDMDLP 123
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFY 243
A+ + + S I + R V E +S E + + ++ + A
Sbjct: 124 YAITYM-QALSSTIVLYDIFRSVYEA-EDLYGEVSRECGIIVRDVELFGEDLLSAMNYVV 181
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + + LI R G ++ + R E E L + +
Sbjct: 182 TITPSERFKELIGDLILVYRSGGNLTNFFNAKSESYREIARQELEALLQFLEMIAEIYVT 241
Query: 304 IFFLPVLILVII 315
F + ++I+
Sbjct: 242 AFVAGPIAIIIM 253
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 69/180 (38%), Gaps = 6/180 (3%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR---VGAVILIGYVGFCAPSVWIS 169
+ + I+F + +F + +P + A+I I + P +
Sbjct: 345 PVRYYISDYNIGIVFGFVAAGLVFFTYYIGSFPQLMPQNTTEALICIMLISGMLPVMLSY 404
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ + ++++ P+ L + + G+++ A+ ++ S E+ + E+
Sbjct: 405 EIRSRYVRNVEKQLPELLREISDMRDIGMTLQSAITMISSSKNSVL---SSEIRIVSDEM 461
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + A R + V+ A L+++ +I + L + +S+ M++++
Sbjct: 462 KYGSSLSGALVRMEERVGLVSVKRAISLLVKASEVTDAIREILAIAISDLEHYLRMKSKR 521
>gi|307354769|ref|YP_003895820.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307158002|gb|ADN37382.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 463
Score = 59.8 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
++ + + + + +KR+ + + + L L + G+ +++ +A+
Sbjct: 124 FLIFAILIAITPYGIDITLQKMAKKRKEEL---FTEFLFKLSEMMRGGLDPIKSVNELAK 180
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ L+ + + +++ + + A + T + + T+ +I++ G +
Sbjct: 181 ---AEIGVLTPHIRIAANRMAYGDSFERAMKAMARSTGSELIARYTELVIEASYSGGGVS 237
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
D + + RS +E +K+ +I +F ++I+ I
Sbjct: 238 DLILKCSDDMRSILSIERQKEGDLKQ----FVLIFYFAQIIIIFI 278
>gi|29826727|ref|NP_821361.1| integral membrane protein [Streptomyces avermitilis MA-4680]
gi|29603823|dbj|BAC67896.1| putative integral membrane protein [Streptomyces avermitilis
MA-4680]
Length = 294
Score = 59.8 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 88/271 (32%), Gaps = 2/271 (0%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
+ L G + + + E + +LQ+ + ++ + L
Sbjct: 3 LFPVVLTGGAVGAGLALLVRELLRPQAALGPALQRSAPATLTMPEPELDREEVWGRWLLA 62
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ + + +L + + L I I + PF +
Sbjct: 63 RLERLPGVRIPTINLALLGQGRGQFMLRKTTLAALGLLCPVIATIPWIIAGVSLPFYVPA 122
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
G +LI + F P + + + ++ + A LDL+ + + +AL + AE
Sbjct: 123 GVGLLIAGLLFITPDLAVRDQAKRAREEFAHALSAYLDLVALKRAADAGPAEALEKAAE- 181
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+G L + L A + A + + + + S G ++
Sbjct: 182 VGLGWPFLFLQGALRRARMEK-IPPYQALTELAAEYDLPVLDDVADIMRGSATDGAAVYK 240
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+LR + SE L + +A + K+T P
Sbjct: 241 ALRARTAALNSELLADQAAEANAASEKMTAP 271
>gi|298253206|ref|ZP_06976998.1| Flp pilus assembly protein TadC [Gardnerella vaginalis 5-1]
gi|297532601|gb|EFH71487.1| Flp pilus assembly protein TadC [Gardnerella vaginalis 5-1]
Length = 215
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 22/155 (14%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++++ + SG++I +AL V E + L A+ + Y +
Sbjct: 64 MIIVSLRSGVAITRALSAVGEVFPCGQGMW---LCSVSNALLAGDTWHEAWSSTYTKQDN 120
Query: 249 DCV-------------------RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ R +L +S YG+S L L A +
Sbjct: 121 FELENKSKFTNRKNLDSSEILARWLMTSLKESWCYGSSPVPVLSALAQHYEINMANIARQ 180
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+++ L +L +P+ + FLP I + I P ++S++
Sbjct: 181 ESSKLSVRLLLPVGLCFLPSFICIGILPTVMSLMR 215
>gi|329765280|ref|ZP_08256860.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138186|gb|EGG42442.1| Flp pilus assembly protein TadC [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 304
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 4/179 (2%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
L A +++ + F + V+ R + + P + + SG+S+++ +
Sbjct: 91 LLPPIAGMVLMLMTFGILQIIPIARVKNRATKLLEEIPHFIGYMSTLATSGLSLEEIFKA 150
Query: 207 VAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+A+ + ++ + + A ++ NRT + I + + G
Sbjct: 151 IAK--EETDEDIVKDARFITRNIEILGMDLITAVKDLINRTPPGPYSELLEGAIITSQSG 208
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ + E+ M +K SLG + I+ + L+ VI+ +I+ I+
Sbjct: 209 GDLKEYFNATAKVQLEEKKMLLQKTTESLGSVAEIYTILLIVFPLLAVIML-SIMGIMS 266
>gi|229816458|ref|ZP_04446759.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
13280]
gi|229808000|gb|EEP43801.1| hypothetical protein COLINT_03512 [Collinsella intestinalis DSM
13280]
Length = 247
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 3/144 (2%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+K++ ++ A +A L + SG+S+ QA+R V P+ E L A+++
Sbjct: 67 RKKRERLEGAMVEAFGALAASMASGLSLAQAMRYVGSHAQE---PVRTEFLRAEAQVACG 123
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + R + T AL S R G + D L R + +
Sbjct: 124 AGMTEALDELVERLHAPGLDFVTLALKVSRRTGAPLSDVLGEATRLVRERVELRRKLDVR 183
Query: 293 SLGPKLTVPMIIFFLPVLILVIIG 316
+ +++ ++ ++ +
Sbjct: 184 TAQVRMSARLVAGMPVAMVAFLAA 207
>gi|32477852|ref|NP_870846.1| protein secretion system or pilus assembly related protein TadB
[Rhodopirellula baltica SH 1]
gi|32448409|emb|CAD77924.1| probable protein secretion system or pilus assembly related protein
TadB [Rhodopirellula baltica SH 1]
Length = 297
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/190 (14%), Positives = 67/190 (35%), Gaps = 7/190 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++G + L P + ++I + S W + + + I+R
Sbjct: 72 FVPFVIGALVSLTLGLLTSIPLSIVAAIGVVIALLLAQLESGWYAWRLSR----IERQLI 127
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D LD+++ + SG AL +E PL +++ + + + F
Sbjct: 128 DLLDMMIPMLRSGAGASAALAAASEVTAS---PLRDQIHWCVRRIQLGDSGSSVFRELAR 184
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R +D + + + G S+ L + R + + ++ + + ++
Sbjct: 185 RMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQFSTIAVL 244
Query: 305 FFLPVLILVI 314
+ + LV+
Sbjct: 245 LLIYFVALVL 254
>gi|332982942|ref|YP_004464383.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700620|gb|AEE97561.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 250
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/227 (13%), Positives = 81/227 (35%), Gaps = 5/227 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ I L+ G + + L ++ L + I + + + +
Sbjct: 21 DKIDRTLQNTGGARLFIFDAKNAAELFSAVLVLSALMSIILVFGLMRGISPTILFIGLAG 80
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G + I Q+ P ++LL+ + + ++ L+ +A++ +
Sbjct: 81 FGITLYVGYQKPIDEFKQRLMKD--NELPTVVNLLVQGLSVEMPVENILQYIADN---KH 135
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + + I ++ + + + ++ + T+ L +S + L+ +
Sbjct: 136 GAMRDIIKGAIDNINLGIPLEQSLQEAAEKSMNKYFQRVTRILTKSKESSKGLAAQLQDV 195
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+S+ ERL L L + + + LI++I+ P I S+
Sbjct: 196 LSDMEEERLNTKLSHVNMLDNALFFVVFLGYFLPLIVMILMPMITSM 242
>gi|313126822|ref|YP_004037092.1| archaeal flagella assembly protein j [Halogeometricum borinquense
DSM 11551]
gi|312293187|gb|ADQ67647.1| archaeal flagella assembly protein J [Halogeometricum borinquense
DSM 11551]
Length = 682
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 83/216 (38%), Gaps = 11/216 (5%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC---APSVWISNLV 172
+V V +L + + + + Y+ P + +
Sbjct: 395 YTLVLTVPAATVFVLTAVIGGAAPLSWDAMLNQPIWGTFVWWYIPAYVIGIPLAFFHSWN 454
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + ++ + L L ++G ++ ++++ V+ S L++E + A++++
Sbjct: 455 NRSRQAVVGKLSENLRKLSSANDTGQTLLESVKTVS---DTSSGKLADEFEVMHAKVNYG 511
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A F N+ + + + + ++ + I D L + ++ +E E+K+
Sbjct: 512 MSLRSALVEFNNKYHIPRLARTVKLISKAQEASSQITDVLSTAAQASENQDDIERERKSR 571
Query: 293 SLGPKLTVPMIIFFLPVLILV--IIGPAILSIIDTM 326
++ V +I+ L+ V I+ L ++ +
Sbjct: 572 ---TRMQVAIILMTYLTLLAVMAILKTQFLDVMAGL 604
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/267 (11%), Positives = 67/267 (25%), Gaps = 36/267 (13%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
R + + L + ++ KL A R ++ + L L
Sbjct: 4 DSPTSGGLDRSSDTLGDAFYPLFRLLFDEDGDFVSDVERKLEQA--RMPATVELYLSHAL 61
Query: 122 VVPI---------------IFLILGIIWIFGYDKLLEYP-----------------FQLR 149
V + G++ + P
Sbjct: 62 AVGVLAGGLLWLLGSLIGYAMFAFGLVSAETLSLGIPTPDAQTAAFLESLTMPFGVLVSG 121
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ + +GF + R+ I PDA+ + G++ + L +
Sbjct: 122 LVFGSIGFALGFGTLVAVPFSKASSRKREINMLLPDAISFMYALSVGGLNQLEILEAMGR 181
Query: 210 DIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
++ E + E + + + A + T D + ++ G ++
Sbjct: 182 A-EDTYGEVAREFQSIVQETEYFGTDYRNAIRDQAMVTPSDELSQFLTDMLSIVNSGGNM 240
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLG 295
L + E E +L
Sbjct: 241 EQFLDDKKEKHLRTAKQEQEMTLETLE 267
>gi|257790323|ref|YP_003180929.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|317489772|ref|ZP_07948271.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325830267|ref|ZP_08163724.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474220|gb|ACV54540.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|316911118|gb|EFV32728.1| hypothetical protein HMPREF1023_01970 [Eggerthella sp. 1_3_56FAA]
gi|325487734|gb|EGC90172.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 306
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ V S +++++ALR A + PL EE+ +A+ ++ +AFE RT
Sbjct: 139 IAASVRSSLTLERALRTAASHVED---PLREELARVLADTAYGTTLAMAFERMARRTDSP 195
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
VR+ A+ R+G ++ L ++ + + E K G +L + +P
Sbjct: 196 DVRSLAAAVRIQQRFGGAVAPVLDLIAAHAAARLRTSRELKTELAGTRLAKWFVALAMPA 255
Query: 310 LILVIIG 316
+ ++
Sbjct: 256 IFFIMFA 262
>gi|322368727|ref|ZP_08043294.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
gi|320551458|gb|EFW93105.1| flagellar assembly protein J [Haladaptatus paucihalophilus DX253]
Length = 576
Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 10/221 (4%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
E + + + +V I+F + ++ +F D + + + + ++
Sbjct: 29 MEMPMVRYVGLVIVPSILFFFISLVVVFSVDLPFLVALPVPLLGALALTTAV-----IYP 83
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L +R+ I+ + + + + + Q R ++E + L+ EM +
Sbjct: 84 KLLRDRRRKQIEDRLHLFITHMTVLSTANMDRVQVFRILSE--EAEYKELALEMQRIVQL 141
Query: 229 LS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + + A + + + + L + G I D L +
Sbjct: 142 VDTWNQSLDDALQIRAKKVPSKPLSDFFDRLAYTIGSGGEIQDFLLSEQDVVIQNYVTIY 201
Query: 288 EKKAASLGPK--LTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E +L L + MI+ L+ + P + TM
Sbjct: 202 EGSLRNLEVMKDLYLSMILSVTFALVFATVLPILTGTNPTM 242
>gi|220913900|ref|YP_002489209.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
gi|219860778|gb|ACL41120.1| type II secretion system protein [Arthrobacter chlorophenolicus A6]
Length = 200
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+L+ +++G SI +AL V+ + SE + ++ L+ + + A+ + R
Sbjct: 64 MLELVAAMLDAGSSIGRALELVSMSASARY---SESLRPVVSALAIGADWETAWRSSAVR 120
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ AL + G L + R ER AEK+AASLG KL +P+ +
Sbjct: 121 --QPGILELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVIPLGLC 178
Query: 306 FLPVLILVIIGPAILSI 322
LP I + + P +L++
Sbjct: 179 SLPAFICLGVVPVLLAL 195
>gi|329905443|ref|ZP_08274133.1| type II secretion system protein [Oxalobacteraceae bacterium
IMCC9480]
gi|327547600|gb|EGF32398.1| type II secretion system protein [Oxalobacteraceae bacterium
IMCC9480]
Length = 161
Score = 59.4 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 4/134 (2%)
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ +G+ ++ A + + + PL++E L + E + + N R
Sbjct: 1 MRAGVGLNAATQ---QLVAESQPPLAQEFSLMLREQRLGVTLEQSLTNLSRRIPTTTTTL 57
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
A+ + G + ++L RS ME + A + KL ++ LP+ ++
Sbjct: 58 VVSAMRIAAETGGGLAEALERTSHTVRSRLQMEGKIGALTAQGKLQA-WVVGMLPLSLMA 116
Query: 314 IIGPAILSIIDTMK 327
++ + +
Sbjct: 117 VLNKMEPESMSYLW 130
>gi|124027968|ref|YP_001013288.1| hypothetical protein Hbut_1100 [Hyperthermus butylicus DSM 5456]
gi|123978662|gb|ABM80943.1| conserved crenarchaeal protein [Hyperthermus butylicus DSM 5456]
Length = 621
Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 94/283 (33%), Gaps = 11/283 (3%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
M + RK++ ++ ++ + T SL V + + +
Sbjct: 1 MSLLRRFARRFRKKRESTARRRTVKKVPLTLIYDSLALTVLGKYPERFAKAFQLYEMIDK 60
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG---YVGF 161
AG + L R++ ++ L+ + Y L F ++V + + + F
Sbjct: 61 AGL---NTHPTLYAARILFAVVLLLSAAVVATIYLAFLPISFTVKVVISLALFFAPVIVF 117
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
A ++ ++ R + +P + G+ ++ + R+AE L EE
Sbjct: 118 VAGLMYPASKASSRAERVDMEFPFFAAYMTAMAYGGVPPEKLIERLAEI--RMFRALREE 175
Query: 222 MLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ ++ N A E+ R+ + R G ++ L V E
Sbjct: 176 ARRILRDVKIFGKNILSALEHNALHHPSRLYRDFMLGYLTVIRTGGNVHHYLEVRTQEVI 235
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPV--LILVIIGPAILS 321
R+ + +A +G + + + L + I ++
Sbjct: 236 QARMEDLRNRADRVGLIVEAYVAVAVLGTLSFYIFFIVSGLIG 278
Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 14/225 (6%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + I + + + + ++ + Y + I +G S+
Sbjct: 317 YENIREPYIYMAISVPTAFVTSLILLQLTGVYRIPTATVDIKAISMASAIFALGLMIASL 376
Query: 167 ---WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
+ + +++ I R+ P L +G+S ++++ ++E LS +
Sbjct: 377 GPAIVYMRIARKEKKINRSLPAFFRDLSEVRRTGLSPERSIIVLSE---RDYGELSNVIR 433
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A LS + + AF + +R + L+ + G ++ L +
Sbjct: 434 RIAAALSMGLHVERAFRTAIKGYKSWILRVTMRFLVDAIDVGGGSPTTIDSLARFVSTLI 493
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ K +P VI+ A + + + +
Sbjct: 494 ELNENLKRRLKP--------FIIMPYFGAVIVAVASILTLAMLVN 530
>gi|258510602|ref|YP_003184036.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477328|gb|ACV57647.1| hypothetical protein Aaci_0599 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 268
Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 5/176 (2%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + + IL G+ ++ ++ + ++ L+ E GI+ +
Sbjct: 80 MIWGGMHSLTLGILAGWGMAAYMVMYPWQKRKRFEDDLRFGLRRVKMLMASLYERGITPE 139
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
L + I L + + + A T + +R IQ+
Sbjct: 140 DMLPLL---ISATDGALRQLLERAYQRMQTTDTLADALTWMAQETGLAEMRQLASVWIQA 196
Query: 262 DRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-LPVLILVII 315
RY GTS+ L+ + + R++ L EK+A + +I F LP + LV I
Sbjct: 197 GRYEGTSLETQLKQMAVDERAQFLFNLEKRAERKRMSVLFEVIAFIALPSIFLVGI 252
>gi|306823785|ref|ZP_07457159.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|304552783|gb|EFM40696.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
Length = 171
Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P L++L + + G SI AL V +GG E + L+ + A+
Sbjct: 36 ELPMPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAW 92
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ D + S G S + L + + + + E+ AA L +L
Sbjct: 93 PS------GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLL 146
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P + FLP I V + PAI S +
Sbjct: 147 LPTGLCFLPAFIAVGVIPAIASFL 170
>gi|290958553|ref|YP_003489735.1| type II secretion system F protein [Streptomyces scabiei 87.22]
gi|260648079|emb|CBG71187.1| putative type II secretion system F protein [Streptomyces scabiei
87.22]
Length = 263
Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 6/194 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ G + A + A +++ R P A
Sbjct: 65 LPVGGAVCAGWVLVGGVLGLVAGPAAGVGAWLWLRRARRAGADAEKAYDAAAVSRQLPLA 124
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
DLL C+ +G S A R V E +GG P+ E + AE+ A+
Sbjct: 125 ADLLAACITAGASPVVAARAVGEALGG---PVGESLARGSAEVRLGSEPAEAWRGLAALP 181
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ L ++D G + L +E R++R A ++A +T P+ + F
Sbjct: 182 GAGALARL---LERADESGVPAASPVARLAAEARADRGRSATERARRAAVMITAPVGLCF 238
Query: 307 LPVLILVIIGPAIL 320
LP I V + P ++
Sbjct: 239 LPAFITVGVLPVVI 252
>gi|317403409|gb|EFV83922.1| hypothetical protein HMPREF0005_02048 [Achromobacter xylosoxidans
C54]
Length = 281
Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/186 (17%), Positives = 74/186 (39%), Gaps = 4/186 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + + + A + G AP++ L ++R ++ P AL +
Sbjct: 57 ACAVTLALLAAMSAFALTASGMAAVGTGVAALRAPAMLAGLLRRRRVRRFEQQLPMALLM 116
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + +G+++ ALR+V G PL++E L + E A R +
Sbjct: 117 LASALRAGVALMPALRQVVAQGG---APLAQEFGLMLREQRLGVPWDEALARLNTRMTAE 173
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
A+ + + G ++ ++L + + ++A + + ++ I+ LPV
Sbjct: 174 STTLMVAAMRTAVQTGGNLAEALDSIAQTLFARLQLQARLRTLTAQGRMQA-WIVGALPV 232
Query: 310 LILVII 315
L+L+ +
Sbjct: 233 LLLIAL 238
>gi|76802644|ref|YP_330739.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76558509|emb|CAI50101.1| transmembrane protein (homolog 2 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 671
Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/322 (12%), Positives = 106/322 (32%), Gaps = 15/322 (4%)
Query: 4 YFFDLFDATELAVAITTA--------VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREIL 55
Y L + + ++ +Y ++ P +G+G L V E
Sbjct: 268 YMTLSLFPLLLIIIVVIMSMLGEAQDALLYGTVYGLI-PLIGAGFLVLVSTVVQDEVGDG 326
Query: 56 RKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR---AAGFRSEYS 112
+ D +SS + + ++ +L FR
Sbjct: 327 YLRADDGAVADESSSMFDLGLAADYAGRRAVFDRIETKEGTHLTLQLLARPHLFFRDNPL 386
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + V ++ + + + + + + + P
Sbjct: 387 AVLAITVPASAVLVGMSVSAGVAPLSLEGMIAAPVMGTFFWVYVPLYINLIPLTLFYEWN 446
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + I + D L L ++G+++ +++R VA S L+EE + A++++
Sbjct: 447 VRSRRKITDSLSDDLRKLSSANDTGMTLLESIRVVA---DTSSGRLAEEFRVMYAKVNYG 503
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A F N+ + + + + ++ + I L + ++ +E +K+
Sbjct: 504 TSLKTALREFNNKYHIPRLARTLKLISKAQEASSQITQVLSTAAQASENQDDIERNRKSR 563
Query: 293 SLGPKLTVPMIIFFLPVLILVI 314
+ + + M L ++ ++
Sbjct: 564 TRMQMVIIIMTYVTLLGVMALL 585
Score = 57.1 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 62/193 (32%), Gaps = 4/193 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ I K + + GF R+ I D++ +
Sbjct: 99 YLSIVNELKFPFIIAVSGLFFGSIGFGAGFGGMVAKPYLEADARKREINVLLSDSVSFMY 158
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRTQMDC 250
G++ + L +A +S+E + E + + + A N +T +
Sbjct: 159 ALSVGGLNQLEILEAMARA-DDTYGEVSQEFQSIVLETEYFDTDYRTAIRNQAMQTPSEE 217
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ ++ G + L + E E +L + M + P+L
Sbjct: 218 LSQFLTDMLSIINSGGDMEQFLEDQKEKHMRTSKQEQETVLETLELFGEMYMTLSLFPLL 277
Query: 311 ILVIIGPAILSII 323
+++I+ I+S++
Sbjct: 278 LIIIVV--IMSML 288
>gi|210629926|ref|ZP_03296173.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
gi|210160743|gb|EEA91714.1| hypothetical protein COLSTE_00056 [Collinsella stercoris DSM 13279]
Length = 218
Score = 59.4 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN-RQVAFEN 241
+ +D++ + + +G+S D AL G+S PL+ + + R+
Sbjct: 78 VSEMVDIVRLGLSAGLSFDAALELYC---DGRSGPLAVRLARAHVSWQSGLSTREDELRL 134
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
T + + A+ Q+ G + ++L E R+ E E++ KL +P
Sbjct: 135 VARETGVRALETFAIAVSQALELGAPLAETLEGQGREMRAAHRAEVERRIERAPVKLIIP 194
Query: 302 MIIFFLPVLIL 312
LP L+L
Sbjct: 195 TGTLILPALLL 205
>gi|319937913|ref|ZP_08012313.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
gi|319806819|gb|EFW03458.1| hypothetical protein HMPREF9488_03149 [Coprobacillus sp. 29_1]
Length = 323
Score = 59.4 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/200 (13%), Positives = 69/200 (34%), Gaps = 2/200 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ + F + ++ G++ V + N + K + ++K + +
Sbjct: 92 LSLYSVALFFVGAVSVNLFIGAGPLLMLYFGFLAIATVYVLLMNKMDKTRKALKEEFMEK 151
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L + + G++ A+ G S+ ++ E+ ++ + F Y R
Sbjct: 152 LRDIGAHLSVGLNFITAINESLNS-GNTSIVMARELSSVKDDIYSGKSYSETFMKMYERL 210
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
Q+ ++ Q + G + D + + +R + E + + T +
Sbjct: 211 QISEIKAFAQVCEIYEETGGNFLDIIYAFEDSYKMKRKVLQENEVYEAAMR-TEQKFVIG 269
Query: 307 LPVLILVIIGPAILSIIDTM 326
+P + +V G + II
Sbjct: 270 IPSICIVAFGVFMPEIIRGF 289
>gi|119952476|ref|YP_949890.1| hypothetical protein AAur_pTC10016 [Arthrobacter aurescens TC1]
gi|119951606|gb|ABM10516.1| putative Membrane protein [Arthrobacter aurescens TC1]
Length = 317
Score = 59.4 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 91/286 (31%), Gaps = 16/286 (5%)
Query: 48 VAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGF 107
+ E E R+ + + Q+ + + + R V+ ++ ++ L
Sbjct: 29 LIGEIEDWRRGRERATQRAAGGPAPVSPIGRLTRWVVETVDHYRPEWLTSLAPDLA---- 84
Query: 108 RSEYSLNILLVVRLVVPIIFLIL-GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
++ L+ L + + + F + ++ + + Q + +G
Sbjct: 85 ITQRELHSWLARVVGLALTFGLGPTVLMLGRRLGGNDVALQWGPIIGLFLGSAAVVLSVR 144
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP--------- 217
+ K + LDL+ + +E+G +AL A+ +
Sbjct: 145 DLRTQAAKVRGQFVWGLSIYLDLVAMSMEAGKGHAEALPAAAKMGADRVGEGRGLLSDTR 204
Query: 218 -LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
E A R + + + ++ ++ G+ + SL
Sbjct: 205 VFGEIRSAIQRAPEKAITAWEALGRLGERYGIRELISLRSSIELANDEGSRVKASLIARA 264
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
RS RL A ++A + + ++ + + I P ILS+
Sbjct: 265 ETMRSARLAGALERANNATESMRQLTMVAAILAG-IYIAAPYILSL 309
>gi|21392773|ref|NP_652852.1| hypothetical protein BXA0087 [Bacillus anthracis str. A2012]
gi|20520160|gb|AAM26042.1| conserved hypothetical protein [Bacillus anthracis str. A2012]
Length = 229
Score = 59.4 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 13/172 (7%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ P+IF + +I +D L
Sbjct: 59 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPVIFTSVFLICTVFHDYYLFK-------VG 109
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 110 VLISPLLYFYPDYLLKKRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 167
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ L + AEL F NF V T AL Q+ + G
Sbjct: 168 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKNG 217
>gi|257057540|ref|YP_003135372.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
43017]
gi|256587412|gb|ACU98545.1| Flp pilus assembly protein TadC [Saccharomonospora viridis DSM
43017]
Length = 212
Score = 59.4 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
DLL C+ +G+ + A+ VA+ + P++E + T L+ + + A+++ N
Sbjct: 74 LADLLGACLIAGLPVPTAVSTVADV---ATGPVAEVLRSTGNALALGASAESAWQHARN- 129
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+A ++ G+++ L R+ E +A + P+ +
Sbjct: 130 --HPDTAELARAACRTASSGSALAAQAFALAERIRNAATDRVEARAQRASVLVAGPLGLC 187
Query: 306 FLPVLILVIIGPAILSIIDTM 326
FLP + + + P +L + D +
Sbjct: 188 FLPAFLCLGVIPVVLGLADHL 208
>gi|313831096|gb|EFS68810.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
Length = 297
Score = 59.0 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/320 (14%), Positives = 104/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L ++ V+ + + +
Sbjct: 1 MTITALSLLAGAIVTVGLLVIVAAFRPAPGPDLVAALEVVSGRTSSVAENVDQTRIGRIG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + L RL+ +I
Sbjct: 61 RSVTRTFHVSVSPAMRAALRLQG-------------------TTPEALYGRRLICALIGA 101
Query: 129 ILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + + L + + + G+ P+ + A
Sbjct: 102 ILPWLLNAVAIAVGANSPNLLIPSALCVALAGAGWMLPAARLKAAAGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + S + +
Sbjct: 162 IDLVVLERLANETSVDALTNAANM---SDSPLFVQIRQVLNRASLENVDPWNGLDRLAED 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + I+
Sbjct: 219 IKLPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQQESTAITQRLGLWTILQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I
Sbjct: 278 A-GSVMLILLGAAALTLITA 296
>gi|117929187|ref|YP_873738.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649650|gb|ABK53752.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 203
Score = 59.0 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 5/202 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
IFL L +I + + ++ P + ++ + P
Sbjct: 5 IFLWLFLIGLGCAAAGGDARKRMHRRLAAPGFRWNAGRPRRQVLTRARRSPAVTGDLLPL 64
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A DLL C+E+G++ +AL V E +G S L+ + + L + A+
Sbjct: 65 ACDLLAACLETGVTSRRALELVVEALGRDS--LNTPLPAVSSALRLGASAVQAWAEVPAE 122
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
V A Q++ G ++ +L L E R A + A G ++ +P+ +
Sbjct: 123 LGWTEVAR---AFGQAENSGLALAGTLTRLADERRRTVRAWAAQATARAGVRMALPLGVC 179
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
FLP +LV + P I ++
Sbjct: 180 FLPAFLLVGVLPVIFGFAHSLW 201
>gi|256374433|ref|YP_003098093.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
gi|255918736|gb|ACU34247.1| type II secretion system protein [Actinosynnema mirum DSM 43827]
Length = 185
Score = 59.0 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
KR A + DL + SG+ + AL V + G +E + L+
Sbjct: 34 RRAKRSPPDPLALAETWDLFAAALRSGLPVPSALHAV---LPGTPPGPAERLGQVRDLLA 90
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A++ ++ ++ R G ++ D + L + R+ +AE +
Sbjct: 91 LGADPATAWD---PALDHPATAPLARSARRTARSGAALADQVADLAARLRASAADDAESR 147
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + P+ + FLP + + + P ++ I +
Sbjct: 148 AQRAAVLVAGPLSLCFLPAFLCLGVAPVLIGIASGL 183
>gi|228968942|ref|ZP_04129890.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228790749|gb|EEM38402.1| Hypothetical membrane protein [Bacillus thuringiensis serovar sotto
str. T04001]
Length = 216
Score = 59.0 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 5/183 (2%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ + I VG P + +K + ++ L+ + V + S+ A + V
Sbjct: 1 MSLSTTIFGVLVGVSLPPIIGFYKRKKYEEYVENQLMVYLEAVANAVSTHESMTLAFKSV 60
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
+ E L+ + + AF +F + ++ L + G
Sbjct: 61 LPLLQSPIKDDVERCLIL--YTEDGKSIRDAFHSFVQKYNYKDIKLFHDMLDLISKTGKD 118
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTV---PMIIFFLPVLILVIIGPAILSIID 324
+ L + E + +++ A+ K+ + T +++ LP+ L I +
Sbjct: 119 TDNILLNIAHEFQDKKIYRAKLKSGMQPQRRTFKQTAIMLASLPIAALAINADDYVVFAR 178
Query: 325 TMK 327
T++
Sbjct: 179 TLQ 181
>gi|171741512|ref|ZP_02917319.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC
27678]
gi|171277126|gb|EDT44787.1| hypothetical protein BIFDEN_00597 [Bifidobacterium dentium ATCC
27678]
Length = 183
Score = 59.0 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P L++L + + G SI AL V +GG E + L+ + A+
Sbjct: 48 ELPMPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAW 104
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ D + S G S + L + + + + E+ AA L +L
Sbjct: 105 PS------GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLL 158
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P + FLP I + + PAI S +
Sbjct: 159 LPTGLCFLPAFIAIGVIPAIASFL 182
>gi|331002545|ref|ZP_08326062.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330409148|gb|EGG88604.1| hypothetical protein HMPREF0491_00924 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 266
Score = 59.0 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 7/214 (3%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + + II ++G + F + + I+ + G A
Sbjct: 17 GLMGNADDYNIYHMTWKDYIIGYLIGFVPGFVVIMIFFRIMIIS---AIVGAFCGIPAIR 73
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE---EM 222
++ +KR+ + + D L+ L SG + +A +D+ S+ E
Sbjct: 74 LYRKYRKEKRKRDLLIEFRDLLEALTTSYSSGKNTMEAFAESYQDLLSLYGEKSDIVNET 133
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ IA ++ + ++F R +D V + R G I + +
Sbjct: 134 RIIIAGMTNNIIIEDLLKDFAKRCGLDDVESFASTFESGLRQGGDIKQVVWDSRKIINDK 193
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+E E K L K I+ +P++I++ +
Sbjct: 194 IEIEMEIKTM-LTEKENELNIMMVMPLVIMITLS 226
>gi|225386976|ref|ZP_03756740.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
DSM 15981]
gi|225046988|gb|EEG57234.1| hypothetical protein CLOSTASPAR_00726 [Clostridium asparagiforme
DSM 15981]
Length = 416
Score = 59.0 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ-------SVPLSEEM 222
++R++ + +P+ + L+I + +G+++ A R+A D + EEM
Sbjct: 256 KAAKQRENQLLMDYPEVVSKLMIFLGAGMTVRTAWERIAGDYRDMLGSGRRTPRHVYEEM 315
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRS 281
T ++S A+ F R + L Q+ + G+ ++ + LR ++E
Sbjct: 316 YETCCQMSRGVPEGQAYGEFGRRCGLLPYMKLCSLLEQNRKNGSRNVRELLRAEMTEAFE 375
Query: 282 ERLMEAEKKAASLGPK 297
R A + G +
Sbjct: 376 LRKHGARRMGEEAGTR 391
>gi|256827716|ref|YP_003151675.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
gi|256583859|gb|ACU94993.1| Flp pilus assembly protein TadB [Cryptobacterium curtum DSM 15641]
Length = 321
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 3/173 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + F L+ I S S+ +++R+ +++ A PDA+
Sbjct: 94 ALCSCLVGFFLVCLVGGAVLGAPLMGAAIPIAILALASQVASHAIERREDALREALPDAV 153
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ IC+ +G+S Q R+ E PL E L+ A
Sbjct: 154 WSIGICLHAGLSQQQTFSRLEE---ESHGPLKEVFSRVSQALAAGSPLDEALALLKGDGS 210
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + AL + G S+ L E + + +L+
Sbjct: 211 IRELTFVATALEIQHQAGGSMKQVLETAGEMLAHETNLRRSLAVNTAQARLSA 263
>gi|255324192|ref|ZP_05365314.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
gi|255298708|gb|EET78003.1| putative membrane protein [Corynebacterium tuberculostearicum
SK141]
Length = 198
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+S+ A VA Q+ L A L Q A+ + +
Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKEL---WETVAALLGVGVPAQSAWGHMKSHA 120
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + I S + G +I + + + R+E A +A G + +P+ + F
Sbjct: 121 GLEDLAQLV---IMSGQSGATIAAGCQRICTSLRAEASAHATAQAERAGVFIALPLAVCF 177
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 178 LPAFIVLGLAPVVISL 193
>gi|302544240|ref|ZP_07296582.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302461858|gb|EFL24951.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 195
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ + ++ T AEL A+ + +AL + G + + +
Sbjct: 84 GPVGDRLVRTAAELRLGGEPVGAWGRLG---ALPGASGLARALEHAGTTGAPAVEPVSRI 140
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
++ R+E+ EA ++A T P+ FLP +L+ + P + + + H
Sbjct: 141 AADCRAEQGREAGRRADRASVLATAPLGACFLPAYLLIGVAPVMTGLAGGLAGH 194
>gi|307352385|ref|YP_003893436.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307155618|gb|ADN34998.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 646
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/176 (14%), Positives = 64/176 (36%), Gaps = 3/176 (1%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ VP+ + + +++ + V ++I + P +++
Sbjct: 364 RTLYFTVPLALIYIIAVYLVTPQYSDTELYIAVVDDHVIIAMLIVILPYAVFFEFWRRKL 423
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
SI+ + PD L+ L G++I A+ + + +S E+ +L + +
Sbjct: 424 KSIESSIPDFLERLSGINRVGLTIAGAINVL---VKANLGLISYEIRRIKRDLEWGASVN 480
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A F R + + ++ IG+ L + ++ R ++ E++
Sbjct: 481 DALIRFEERVNTAAIARTVTLITKASEMTGDIGEVLGIASADARMSETLKKERQGE 536
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 2/183 (1%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ + IL+ ++ + + S R + I + +A+ +
Sbjct: 83 YYIPQLNQTNFAILAFFVIFILLSFISYHVMIRYPSIKKASRTTKINLSLHNAVSYMFAM 142
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVR 252
G + R ++E+ ++ E + + + + A EN T + ++
Sbjct: 143 RRGGAEMLDIFRSMSEN-AVVYGEVAIEFRQVLRDAEYFGHDLISALENLSMTTPSEKLK 201
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + L+ G +I + L V + E E + ++L + +F L L
Sbjct: 202 DFLEDLVSVTGSGGNISEYLEGRVRMYQEEARFEQLQFLSTLQIVAEAYVTVFVAGPLFL 261
Query: 313 VII 315
VII
Sbjct: 262 VII 264
>gi|21323067|dbj|BAB97696.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length = 182
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+++G++ A + VA L +A LS + AF
Sbjct: 46 IELFSACLDAGLNTRDAAQVVAHVAAITHREL---WTHVVALLSIGVSAPQAFALMA--- 99
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D + S R G+++ D R + + + + A G + +P+ + F
Sbjct: 100 GVDGLDELANLATVSHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIALPLALCF 159
Query: 307 LPVLILVIIGPAILSI 322
LP ++V + P +LS+
Sbjct: 160 LPAFMIVGLAPVVLSL 175
>gi|307353959|ref|YP_003895010.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307157192|gb|ADN36572.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 307
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/260 (15%), Positives = 81/260 (31%), Gaps = 30/260 (11%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ K K + N + A R + + II ++ I L
Sbjct: 10 SIFGKRAKKKREDYLTLRNDMIRA--RMKTPYEAYISTAYFSSIIAGLMAAILFSLITYL 67
Query: 142 LEYP-------------------------FQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L P + + +++++G + + ++ S L R+
Sbjct: 68 LRLPEIFVYKGNVPDIFIEMSKYSLILGTVFVLIISLVVVGGLTYSIFLIYPSILAGDRR 127
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNR 235
+I P A++ + +GI+ + R + + E E+ F +
Sbjct: 128 RNIDSTLPYAINYITAMSTAGITPAEVFRLLGNS--EIYGESAVEARYITREIDVFGKDL 185
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A T D +R+ Q I S G+++ + R + E + +LG
Sbjct: 186 LDALRLAGQYTPSDRMRDFLQGAIASISSGSNLTEYFRNKSEQYMKENRQTQKTFLETLG 245
Query: 296 PKLTVPMIIFFLPVLILVII 315
+ L L+I+
Sbjct: 246 LISESYVTALVAGTLFLIIL 265
>gi|227494419|ref|ZP_03924735.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226832153|gb|EEH64536.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 351
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 9/204 (4%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
VRL+ + + LG+ W+ G D V + G + A VW+ LV K
Sbjct: 148 VRLLAALPAVGLGLAWLLGADLPAFITGTFWGWLVAVAGGGLWVAGFVWVRRLVAKFHEQ 207
Query: 179 IKRAWPD--ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ A+ L C+ +G+++ ++L +A G + + +
Sbjct: 208 KRENVDPVVAVRLFAACLVAGLAVPRSLEVIAAGCG------YPNLAVVSRLFLLGADSS 261
Query: 237 VAFENFYNRTQMDCVR-NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
E + D V + A++ + G+ +L ++V R ERL+ + + LG
Sbjct: 262 EVTEFLSSVAASDVVTTHLGLAILTAWMRGSDPLATLELVVQRLRRERLLGVQVEIQKLG 321
Query: 296 PKLTVPMIIFFLPVLILVIIGPAI 319
L +P+ + FLP +L+ + P
Sbjct: 322 VWLALPLGLCFLPAFVLLGVVPVA 345
>gi|225351275|ref|ZP_03742298.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158731|gb|EEG71973.1| hypothetical protein BIFPSEUDO_02867 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 174
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 9/145 (6%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P L++L + + G SI +AL V + G+ + +L+ +
Sbjct: 36 RVRELPLPLVLEMLSVAIRQGSSIPRALIAVGDIAAGEFGA---GLRSAGEQLNKGVSWD 92
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A+ + A S G S + L V + + + E+ AA L
Sbjct: 93 DAWP------DDGDLAVVRDAFASSWHSGASPVERLETAVEQLDWDERSQIEQAAAKLSV 146
Query: 297 KLTVPMIIFFLPVLILVIIGPAILS 321
+L +P + FLP + V I PA++S
Sbjct: 147 RLLLPTGLCFLPAFVAVGIIPAVMS 171
>gi|315501227|ref|YP_004080114.1| type ii secretion system f domain protein [Micromonospora sp. L5]
gi|315407846|gb|ADU05963.1| Type II secretion system F domain protein [Micromonospora sp. L5]
Length = 242
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL++ + L + A+ + T + V A ++S G ++ +L L
Sbjct: 134 GPLADRLGRVGRTLRLGGSPGEAWAHLEGVTGAEPV---VAAAVRSSNSGAALARALTRL 190
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R+ER AE A G + +P+ + FLP IL + P I++++
Sbjct: 191 ADDLRAERSTSAEAAARRAGVLIVLPLGLCFLPAFILAGLVPVIVAVL 238
>gi|255326720|ref|ZP_05367796.1| bacterial type II secretion system protein F domain protein [Rothia
mucilaginosa ATCC 25296]
gi|255295937|gb|EET75278.1| bacterial type II secretion system protein F domain protein [Rothia
mucilaginosa ATCC 25296]
Length = 416
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 10/141 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+LL + +G++ AL +AE + S + L N A+
Sbjct: 284 VLELLAAQLRAGLAPLAALGTLAEALN------SRPLHTVCQRLQMGSNWGSAWSGSAAG 337
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T AL + G L L R AE+ A L L VP+ +
Sbjct: 338 T----FGELRDALAPAYTGGAPSTALLLSLADAHRLNERRAAERAAGKLSVALVVPLGLC 393
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP I + I P ++S++ T+
Sbjct: 394 SLPAFICLGIVPILISLLPTL 414
>gi|229587496|ref|YP_002860534.1| putative bacterial type II secretion system protein F domain
protein [Clostridium botulinum Ba4 str. 657]
gi|229260234|gb|ACQ51271.1| putative bacterial type II secretion system protein F domain
protein [Clostridium botulinum Ba4 str. 657]
Length = 164
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L+ L+ ++ G+ + L ++ + G + L + L + +++ + A
Sbjct: 22 LPAVLETLIQGLQIGMPVYPILLYISNNKKGNTADL---INLCVTKVNSGMDINKALREV 78
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ D + ++DR ++ L L + ER+ + A L L PM
Sbjct: 79 AEKSLNDYFLRMALIIEKTDRSVINLDKQLEYLQQDMEEERINIKTEHADKLDNALFFPM 138
Query: 303 IIFFLPVLILVIIGP 317
+I + LI++I+ P
Sbjct: 139 LIGYFIPLIIMILVP 153
>gi|148556413|ref|YP_001263995.1| type II secretion system protein [Sphingomonas wittichii RW1]
gi|148501603|gb|ABQ69857.1| type II secretion system protein [Sphingomonas wittichii RW1]
Length = 302
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 3/199 (1%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L+ R + + +L + ++ A +++ A ++ ++R
Sbjct: 65 LLARAQILLTSRLLLSVSGALALAVIGALLAFGTFAALVVAIALPAALLFYLRRRARRRT 124
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P +D + + G S+ QAL A + S + + I +
Sbjct: 125 EQLIEDLPFFIDAVRQLIAVGNSLPQAL---ARALPASSPAVHAYLGPAIRRIELGAPLG 181
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A + R + + A+ + RYG + L + + R + E AA+
Sbjct: 182 EALQQVATRLHLTEISMLASAIRVNIRYGGPLTHILSNIAALIRERGRVAREIAAATAEM 241
Query: 297 KLTVPMIIFFLPVLILVII 315
+++ ++ +L +
Sbjct: 242 RVSAKLLAVMPLILAAFFL 260
>gi|260768629|ref|ZP_05877563.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
gi|260616659|gb|EEX41844.1| flp pilus assembly protein TadB [Vibrio furnissii CIP 102972]
Length = 292
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 11/200 (5%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
L ++ + ++ + F + + +LI +
Sbjct: 62 FSRSPLKNTLLLGGIVLLSAMLASRFGPVAFPVTLVLSVLIVFATAQI-------RRNNI 114
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ + + P ++ + ++ G+SI QA+ + A + PL + + I +
Sbjct: 115 KLQLVQQLPSFVEQVNRRIKVGLSIAQAVEQSAS---ATNAPLKDVLQRVIHRKAVGVEL 171
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
Q AFE T + + RYG SI DSL LV R + L E K+ +
Sbjct: 172 QDAFEKESVVTGVVAFHLLGSIFSINTRYGGSITDSLESLVKLLRQQDLSRRELKSITGE 231
Query: 296 PKLTVPMIIFFLPVLILVII 315
++T +I P+L+ +
Sbjct: 232 TRITA-WVIGSAPLLVSAYM 250
>gi|311741045|ref|ZP_07714870.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
gi|311303847|gb|EFQ79925.1| membrane protein [Corynebacterium pseudogenitalium ATCC 33035]
Length = 198
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+S+ A VA Q+ L A L Q A+ +
Sbjct: 64 VELFAACLAAGLSVHGATTAVARTADAQTKEL---WETVAALLGVGVPAQSAWGHMKGHA 120
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ + I S + G +I + + R+E A +A G + +P+ + F
Sbjct: 121 GLEDLAQLV---IMSGQSGATIAAGCHRICTSLRAEASAHATAQAERAGVFIALPLAVCF 177
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 178 LPAFIVLGLAPVVISL 193
>gi|212717043|ref|ZP_03325171.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM
16992]
gi|212660031|gb|EEB20606.1| hypothetical protein BIFCAT_01990 [Bifidobacterium catenulatum DSM
16992]
Length = 175
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 66/181 (36%), Gaps = 9/181 (4%)
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
++ + L V + + + + + P L++L + + G SI
Sbjct: 1 MMTGLWMLTAVVCAAEAIWLKQWRPVRVPSDLAPAERMRELPLPLILEMLSVAIRQGSSI 60
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
+AL V + G+ + +L+ + A+ + A
Sbjct: 61 PRALIAVGDIAAGEFGA---GLRSAGEQLNEGVSWDDAWP------DDGDLAVVRDAFAS 111
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
S G S + L V + + + E+ AA L +L +P + FLP + V I P+++
Sbjct: 112 SWHSGASPVERLETAVEQLDWDERAQIEQAAAKLSVRLLLPTGLCFLPAFVAVGIIPSVM 171
Query: 321 S 321
S
Sbjct: 172 S 172
>gi|226325874|ref|ZP_03801392.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
gi|225205998|gb|EEG88352.1| hypothetical protein COPCOM_03687 [Coprococcus comes ATCC 27758]
Length = 141
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 50/134 (37%), Gaps = 3/134 (2%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL---RRVAEDIGGQSVPLSEEML 223
I +K + +R + DAL L + G S++ A+ +R + + + + E
Sbjct: 1 MIRQAEEKGKRCFERQFQDALQSLEAQLNVGYSMENAIKEVQRDLQIMYDRHTLIVREFT 60
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ +L+ + A+++F R + V + R G ++ V + +
Sbjct: 61 YMVRQLNLNVTAEAAWKDFAARVALPEVDTFVTVFSLAKRSGGDSILIIKNAVRQLGDKA 120
Query: 284 LMEAEKKAASLGPK 297
++ E K
Sbjct: 121 EVKREIDTVIAAKK 134
>gi|154507637|ref|ZP_02043279.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
17982]
gi|153797271|gb|EDN79691.1| hypothetical protein ACTODO_00118 [Actinomyces odontolyticus ATCC
17982]
Length = 292
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 69/190 (36%), Gaps = 5/190 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
LI + + + L +++ P W+ + + +++ AWP+ +
Sbjct: 58 LIALSLGVGSFVALAILAVTGAWPVALIVSVGVAFLPYAWVVSRLGAHAKTVRAAWPEVI 117
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ V +G ++ Q L +AE VP+ + S ++A +
Sbjct: 118 DAMVSGVRAGTALPQVLCDLAE---EGPVPVRFAFEAFSRDYSANGRFELALDTMKETVA 174
Query: 248 MDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+AL + G + L+ L S R + + E +A + +
Sbjct: 175 DPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGELEARQSWTVGAARLGLAA 234
Query: 307 LPVLILVIIG 316
P ++L+++
Sbjct: 235 -PWVVLLLLS 243
>gi|283455154|ref|YP_003359718.1| type II secretion system protein, pilus assembly [Bifidobacterium
dentium Bd1]
gi|283101788|gb|ADB08894.1| type II secretion system protein, pilus assembly [Bifidobacterium
dentium Bd1]
Length = 171
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P L++L + + G SI AL V +GG E + L+ + A+
Sbjct: 36 ELPMPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAW 92
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ D + S G S + L + + + + E+ AA L +L
Sbjct: 93 PS------GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLL 146
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P + FLP I + + PAI S +
Sbjct: 147 LPTGLCFLPAFIAIGVIPAIASFL 170
>gi|289192868|ref|YP_003458809.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
gi|288939318|gb|ADC70073.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
Length = 299
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/189 (14%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L + + V++ PS+ N + +++ P AL ++++ +ESG
Sbjct: 47 SYYLNLTLKSMIIFVVIYVGAALFIPSILYENKI----ETLENNIPQALYIMILALESGR 102
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
SI++AL V + + + ++L + + + + N +R + +
Sbjct: 103 SINEALLEVVKSNIKEVSDIFRKVLYLMENQKL--SFEESMTIVSNLYDSKVLRMLARIM 160
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
I++ +YG + DSL++L ++ + + + + +I+ + + ++G
Sbjct: 161 IENRKYGGDLADSLKILAKTLEDFKMYKKQLLSVTASGLAIGFIILCGVIPAVAALLGAY 220
Query: 319 ILSIIDTMK 327
++++ +
Sbjct: 221 LIAVSGMLS 229
>gi|15668960|ref|NP_247764.1| hypothetical protein MJ_0779 [Methanocaldococcus jannaschii DSM
2661]
gi|2833584|sp|Q58189|Y779_METJA RecName: Full=Uncharacterized protein MJ0779
gi|1499599|gb|AAB98769.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 299
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/189 (14%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L + + V++ PS+ N + +++ P AL ++++ +ESG
Sbjct: 47 SYYLHLTLKSMIIFVVIYVGAALFIPSILYENKI----ETLENNIPQALYIMILALESGR 102
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
SI++AL V + + + ++L + + + + N +R + +
Sbjct: 103 SINEALLEVVKSNIKEVSDIFRKVLYLMENQKL--SFEESMTIVSNLYDSKVLRMLARIM 160
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
I++ +YG + DSL++L ++ + + + + +I+ + + ++G
Sbjct: 161 IENRKYGGDLSDSLKILAKTLEDFKMYKRQLLSVTASGLAIGFIILCGVIPAVAALLGAY 220
Query: 319 ILSIIDTMK 327
++++ +
Sbjct: 221 LIAVSGMLS 229
>gi|312883758|ref|ZP_07743477.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368507|gb|EFP96040.1| Flp pilus assembly protein TadB, putative [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 302
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+++ +++ L L+ V +G+S+ QA+ +V E GG +S E +L
Sbjct: 116 MRKKQQIEEFEQSMVQVLGLISRAVSAGLSVPQAISQVTESQGGL---MSREFSRIEDQL 172
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + A R R T AL+ + G + + L L R M+ +
Sbjct: 173 ALGHGMRYALNEACIRLPYKAFRYFTIALLLNQSNGGQLREILHSLSRTLHENRAMQKKV 232
Query: 290 KAASLGPK 297
K+ + P+
Sbjct: 233 KSLTSEPR 240
>gi|254168618|ref|ZP_04875461.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289595685|ref|YP_003482381.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
gi|197622452|gb|EDY35024.1| Bacterial type II secretion system protein F domain
[Aciduliprofundum boonei T469]
gi|289533472|gb|ADD07819.1| Type II secretion system F domain protein [Aciduliprofundum boonei
T469]
Length = 332
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/224 (14%), Positives = 81/224 (36%), Gaps = 9/224 (4%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R + L + L+V +I +++ + + L + + + V +
Sbjct: 73 LRPQEYLAYVYFTTLLVGVIGIVMAAMLVLMGLSLGNKMITILFLLIGIFMMVIIPIMTY 132
Query: 167 W-----ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+ ++ +KR I P A++ + + +++ + ++ + +++E
Sbjct: 133 FSLISSPASKAKKRAKDIDTHLPTAVNFIAALSSADVTVASIFKELST--RKEYGEIAKE 190
Query: 222 MLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + A E R+ + Q +I + G + E
Sbjct: 191 AEWITRDTELLGKDILTAIEEASRRSPSVKWQEFLQGVITTATSGGRLKPFFMSKSEEYE 250
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
E+ + +K SLG + + + L LV+I AI+++I+
Sbjct: 251 KEKRLMLKKNMESLGLFAEIYVTVGVAFPLFLVVII-AIMALIN 293
>gi|254429908|ref|ZP_05043615.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
gi|196196077|gb|EDX91036.1| Bacterial type II secretion system protein F domain [Alcanivorax
sp. DG881]
Length = 306
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/297 (16%), Positives = 108/297 (36%), Gaps = 41/297 (13%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
++ I AV+ L R +S+ +R R QQ T L ++ +R+ +
Sbjct: 6 LLGMAQVLGIIAVLTVLLQLVWFRYRQRSLVSDRVRQRLQQRTELGQELGQTRVVSGP-- 63
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ L A R + L+ + + V + ++
Sbjct: 64 -------------------LERLLLRADIRLSRTQLTLMGIVIFVMLALVLAS------- 97
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
A ++ + ++ Q+++ +I + P +D L + +G
Sbjct: 98 ---------SGFIAAAVVALFIMASLWLYWRFRFQQQRRAIFESLPGIMDSTLRYMGAGR 148
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
S++ +L +D PL+ + + + F++F ++ + + AL
Sbjct: 149 SLEASLLESFQDAPPVFQPLTFRLRSA---VESGRDYTGLFDDFARLYRVPSLVLVSIAL 205
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
S R+G+SI L+ + + RS++ + E A++ + T LP+ + V +
Sbjct: 206 RTSARFGSSIRPVLQQVANSLRSQQELRREFLASTAETRFTAG-AFTLLPLGMAVYM 261
>gi|10956308|ref|NP_052757.1| hypothetical protein pxo1_61 [Bacillus anthracis]
gi|227811507|ref|YP_002811518.1| hypothetical protein BAMEG_A0082 [Bacillus anthracis str. CDC 684]
gi|4894277|gb|AAD32365.1| pXO1-61 [Bacillus anthracis]
gi|227007935|gb|ACP17677.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
Length = 236
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 13/172 (7%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
E I KL AG ++ L +++ P+IF + +I +D L
Sbjct: 66 KKEQIQKKLEEAGLDTK--PEEYLKMKVAYPVIFTSVFLICTVFHDYYLFK-------VG 116
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+LI + + P + +++ + K P+ L +L +++ +++ + A+ G
Sbjct: 117 VLISPLLYFYPDYLLKKRIKQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAG 174
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ L + AEL F NF V T AL Q+ + G
Sbjct: 175 RH--LRPYVSTLTAELEMYAGSDQPFRNFAAALNSPEVNTFTIALQQAQKNG 224
>gi|254389724|ref|ZP_05004949.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|197703436|gb|EDY49248.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 184
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 58/163 (35%), Gaps = 3/163 (1%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + + + + + A L L+ + + + QAL++ AE G ++
Sbjct: 25 LPDLQLKQQAVEAKEDFRHAVKAYLRLVQLERAADAAPTQALKKAAEVGEGW--VFAKIR 82
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ + + + + + G ++GD+L
Sbjct: 83 DTITRAELEGISPWEGLKRLSIELDVPELGAPADIIAIAGEEGAAVGDTLGAQAKSLSGA 142
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ A+ +A K+ +P+ + L ++ + I PA+ I+ +
Sbjct: 143 LVTSAKAQANMASEKMVMPVAMLVL-IMTVYIGYPALSRIMAS 184
>gi|284989774|ref|YP_003408328.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284063019|gb|ADB73957.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 285
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 5/185 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + ++ V +L G P V + L KR++ ++ WP+ +D L
Sbjct: 59 VGLGLLATVVVLLTTGTVTVSLLFGAFAAALPVVQVRRLAVKRRADLREVWPEVVDNLAS 118
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
V +G+S+ +AL ++ L AE + +
Sbjct: 119 AVRAGLSLPEALSALST---RGPEVLRPPFARFAAEYRSSGRFGNGLDRLKDDLADPVGD 175
Query: 253 NATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ L + G +G LR L S R + AE + + + P ++
Sbjct: 176 RIVETLRVAREVGGSDLGRVLRTLSSFLREDARARAELETRQGWV-VQAARLAVAAPWVV 234
Query: 312 LVIIG 316
L+++
Sbjct: 235 LLLLA 239
>gi|305680311|ref|ZP_07403119.1| type II secretion system F domain protein [Corynebacterium
matruchotii ATCC 14266]
gi|305659842|gb|EFM49341.1| type II secretion system F domain protein [Corynebacterium
matruchotii ATCC 14266]
Length = 172
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
T + LS + A+ + S G + + + + R
Sbjct: 67 WRSTASLLSLGVDVDRAWRELAQA---PGLGELAALARSSHHSGAGLSNGCSRIAARLRD 123
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ A +A G + +PM + +LP L+ + P ++S+
Sbjct: 124 DGADHATAEAERAGVLIALPMTLCYLPAFFLLGLAPMVISL 164
>gi|284989192|ref|YP_003407746.1| Type II secretion system F domain-containing protein
[Geodermatophilus obscurus DSM 43160]
gi|284062437|gb|ADB73375.1| Type II secretion system F domain protein [Geodermatophilus
obscurus DSM 43160]
Length = 237
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P A DLL +C+E+G+ + +A + PL E+ + A+
Sbjct: 97 EADLPVACDLLAVCLEAGLPVG---GALAAVAAALAGPLGPELTTVAGLYRLGAAPRRAW 153
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + L+++ G+++ +LR L + R+E+ A+ G +
Sbjct: 154 ADVP-----AELAVLGRVLVRAGESGSTVVPALRSLAGDARAEQRSRADAAVRRAGVWVL 208
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ + FLP + + + P +L I
Sbjct: 209 APLGVCFLPAFLCLGVVPLVLGI 231
>gi|328759518|gb|EGF73127.1| membrane associated protein [Propionibacterium acnes HL099PA1]
Length = 297
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 103/320 (32%), Gaps = 27/320 (8%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
T L++ V++ L+ +L + V+ L ++ +
Sbjct: 1 MTTTALSLLAGAIVTVGLLVIVAAFRPAPGPDLVAALDVVSGRTSALDERVDQTRVGRLG 60
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S RT L L+ + RL+ +
Sbjct: 61 RSVTRTFHVSVSPAMRAALRLQGA-------------------TPEAFYGRRLIWALCGA 101
Query: 129 ILGIIW--IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
IL + + + + + + G+ P+ + A
Sbjct: 102 ILPWLLNAVAIAVGVNFPGLLIPAALCVALAGAGWMLPAARLRAAAGPTNDDSFEALLVF 161
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+DL+++ + + AL A PL ++ + + + + +
Sbjct: 162 IDLVVLERLANETSVDALTNAANM---SDAPLFVQIRQVLNRAALENVDPWNGLDRLADD 218
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + + G S+ DS R V+E R L+ ++++ ++ +L + I+
Sbjct: 219 IKLPELTDVVSIARLQEE-GASLVDSFRARVAELRDAYLLRLQQESTTITQRLGLWTILQ 277
Query: 306 FLPVLILVIIGPAILSIIDT 325
++L+++G A L++I
Sbjct: 278 A-GSVMLILMGAAALTLITA 296
>gi|255994748|ref|ZP_05427883.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
49989]
gi|255993461|gb|EEU03550.1| hypothetical protein GCWU000322_00832 [Eubacterium saphenum ATCC
49989]
Length = 250
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 74/193 (38%), Gaps = 5/193 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L I F V A + + +++ RQ+ + + D L
Sbjct: 17 AVLVTIISACICMFAGLLFFRNVFAAFIFLGGVIFMRRAYCMHMLDVRQAKMLSQFQDLL 76
Query: 188 DLLLICVESGISIDQALRR---VAEDIGGQSVPLSEEMLLTIAELSFLPNRQ-VAFENFY 243
L S+ +A+R+ V E + G+ L++E+ + ++ +++F
Sbjct: 77 HSLSASFSVNKSMGEAIRQGRIVVELVHGKKAILAQELEIMHRSIAENNVVDTEVWDDFA 136
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R+ M+ + N + G +I ++ + + E KA + K+ +I
Sbjct: 137 KRSGMEDIENFARTYSTCKETGGNIIKAVGDACEVISEKISISKEIKAITNQKKVEGRII 196
Query: 304 IFFLPVLILVIIG 316
+ +P+++L ++
Sbjct: 197 L-IMPIVVLTLLN 208
>gi|307354768|ref|YP_003895819.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307158001|gb|ADN37381.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 324
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 16/244 (6%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF--- 146
NI + A E + + L + + I + + L PF
Sbjct: 50 LDKEEHSNIARMIYQADL--EMTPGLFLSMIIFSAIGAAAIMALVSVFIFALPISPFYSP 107
Query: 147 ---QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
G +L G ++ N + ++ I+R P AL + I SG +
Sbjct: 108 NSPLYIAGLTLLTGIAAGGGFPFYLQNQISNKKMDIERNLPYALAFMSILASSGTTPLDI 167
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
L+ VA +S E + + + A + T D R+ +
Sbjct: 168 LKSVAN---ENYGHISREFSKVLFRVEILGEDAVTAMNALVSNTPSDPFRDICIDISNLI 224
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP----KLTVPMIIFFLPVLILVIIGPA 318
G + L E + R ++ SLG L +++ L +L +VI G
Sbjct: 225 YGGGGLSGYLNAKSKELMNIRRQTDKEFVESLGVFGEGYLGGVIMVLTLAILGIVITGAL 284
Query: 319 ILSI 322
+ I
Sbjct: 285 GIQI 288
>gi|222479408|ref|YP_002565645.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
gi|222452310|gb|ACM56575.1| type II secretion system protein [Halorubrum lacusprofundi ATCC
49239]
Length = 680
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/317 (11%), Positives = 107/317 (33%), Gaps = 13/317 (4%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
++++LI + L K+ + + + L++ S L
Sbjct: 298 FLLYATVYALIPLTGVGFLVLVSTVKQDEP--GDGYLRPDGGSDRLRQTSKEGLLHFGLI 355
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ + ++ +A + + V + ++ +
Sbjct: 356 EAFVGQFGVFDRIRNREGTYKTKQIVSAPHLFLRDNPLYTLALTVPAALVIVGVTVISGN 415
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCA---PSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ V A + YV P Q+ + +I ++L L
Sbjct: 416 APTTFDGWVNRPVWATFVWVYVPAYLVLAPLAVFHEWSQRSKRAITGKLSESLRKLSSAN 475
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
++G ++ +++ V+E + L+EE + A++++ + + A F N+ + +
Sbjct: 476 DTGQTLLESVETVSE---TSTGKLAEEFEVVHAKVNYGMSLRDALVEFNNKYAVPRLART 532
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV- 313
+ + ++ + I D L + ++ + ++ ++ V +I+ L+ V
Sbjct: 533 VKLISEAQEASSEITDVLTTAAQASENQDDI---ERNRISQTRMQVAIIVMTYVTLLGVM 589
Query: 314 -IIGPAILSIIDTMKDH 329
I+ + ++ +
Sbjct: 590 AILQTQFIDVMGDLSSQ 606
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 20/191 (10%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + + LVVP L+ G+++ + +GF
Sbjct: 95 GMPAPTPAIKAFLRSLVVPTAVLVSGLVFGS------------------IGFAIGFGGVV 136
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ R+ I D++ + G++ + LR +A +S+E
Sbjct: 137 AIPYSRASAREREINLLLADSVSFMYALSVGGLNQLEILRAMATA-EDTYGEVSQEFQSI 195
Query: 226 IAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ E + + + A T D + ++ G ++ L+ +
Sbjct: 196 VNETEYFGTDYRNAIRQQSMETPSDELSQFLADMLSIVNSGGNMESFLKDKKEKHLRTSK 255
Query: 285 MEAEKKAASLG 295
E E +L
Sbjct: 256 QEREMTLETLE 266
>gi|327538077|gb|EGF24767.1| type II secretion system protein [Rhodopirellula baltica WH47]
Length = 297
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/190 (14%), Positives = 67/190 (35%), Gaps = 7/190 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++G + L P + ++I + S W + + + I+R
Sbjct: 72 FVPFVIGTLVSLTLGLLTSIPLSIVAAIGVVIALLLAQLESGWYAWRLSR----IERQLI 127
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
D LD+++ + SG AL +E PL +++ + + + F
Sbjct: 128 DLLDMMIPMLRSGAGASAALAAASEVTAS---PLRDQIHWCVRRIQLGDSGSSVFRELAR 184
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R +D + + + G S+ L + R + + ++ + + ++
Sbjct: 185 RMPIDAMELFSTTMSVHWETGGSLAPVLASVARVARDRQEVARRIRSNIAQSQFSTIAVL 244
Query: 305 FFLPVLILVI 314
+ + LV+
Sbjct: 245 LLIYFVALVL 254
>gi|257790306|ref|YP_003180912.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325830204|ref|ZP_08163661.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
gi|257474203|gb|ACV54523.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|325487671|gb|EGC90109.1| type II secretion system protein F domain protein [Eggerthella sp.
HGA1]
Length = 322
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 3/187 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ I + V I + VW+ + KR+ +++ PDAL
Sbjct: 95 LLSVWIAAMVGAGMCAGAAAGSVVCGIAVAVCACACAVVWLRTVQDKRRDALREGIPDAL 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +C ++G+S+ Q ++VA ++ G PL +L A E +
Sbjct: 155 RSMAVCFQAGLSLLQTFQQVASEVQG---PLGTLFARAAHQLETGEGAGRALEVLRRGSS 211
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + AL + G S+ L +SE + + + KL+ ++
Sbjct: 212 VAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALRVQTAQAKLSARVVSVLP 271
Query: 308 PVLILVI 314
VLI V
Sbjct: 272 FVLIAVF 278
>gi|218516697|ref|ZP_03513537.1| pilus component protein [Rhizobium etli 8C-3]
Length = 108
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 42/99 (42%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
M + +A+ A+++F+ Y + IP G+L KRMK+V+ ERE +R ++
Sbjct: 1 MSQDLAATLTNPGMLIAVFVAIAVFATFYTIAIPFFERGDLTKRMKAVSTEREQIRARER 60
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
+ D + + R + + +++
Sbjct: 61 ARMNADPGAGKASLRSQNNRSGPPDRRAVQSASGARRRK 99
>gi|257791503|ref|YP_003182109.1| type II secretion system protein [Eggerthella lenta DSM 2243]
gi|257475400|gb|ACV55720.1| type II secretion system protein [Eggerthella lenta DSM 2243]
Length = 306
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/228 (11%), Positives = 73/228 (32%), Gaps = 21/228 (9%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ L +AG + + ++ +++ + + F L VG
Sbjct: 61 SRLEAMLLSAGM----------AISPAMFLVGVVIAGALLGAFLHGPLGGFGLLVGVAGA 110
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ +KR + AL ++ + G S + ++ VA+ +
Sbjct: 111 AAAA-----WALLLTAAKKRSMQFETQLASALPMISENLRGGSSFEMSISAVAQFM---P 162
Query: 216 VPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
P+ E+ I ++S + AFE R Q A++ G ++ +
Sbjct: 163 EPIHSELQRVIEDVSNASISLPDAFERLAIRIQSSEAHLLATAVMIQKEGGGNLASVVDT 222
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII--GPAIL 320
+ ++ + ++++ + + + ++ P +
Sbjct: 223 IAETIARRIELKNKVRSSTANARFSAVFVAAVPFAVLAFFTYGSPGYM 270
>gi|302864942|ref|YP_003833579.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302567801|gb|ADL44003.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
Length = 242
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL++ + L + A+ + T + V A ++S G ++ +L L
Sbjct: 134 GPLADRLGRVGRTLRLGGSPGEAWAHLEGVTGAEPV---AAAAVRSSNSGAALARALTRL 190
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ R+ER AE A G + +P+ + FLP IL + P I++++
Sbjct: 191 ADDLRAERSTSAEAAARRAGVLIVLPLGLCFLPAFILAGLVPVIVAVL 238
>gi|294791163|ref|ZP_06756320.1| putative bacterial type II secretion system protein F domain
protein [Scardovia inopinata F0304]
gi|294457634|gb|EFG25988.1| putative bacterial type II secretion system protein F domain
protein [Scardovia inopinata F0304]
Length = 190
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 6/158 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ ++ L+++ + + G S+ +A V + L + L
Sbjct: 35 RSQRDDQVFPVQLILEMMTVAIRQGASVPRACEAVGMAMKT---DLGSCLCQISQSLYRG 91
Query: 233 PNRQVAF---ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + A+ + ++T Q L S R+G S + + E R +
Sbjct: 92 ASWEDAWGLSRSLPSQTDRQTCDLLEQTLEPSWRHGASPIIRIETAIEEENRLRSRAMDD 151
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A+ L K+ +P+ + FLP +++ + P++ I+TM
Sbjct: 152 AASKLSVKVLLPLGLCFLPAFVILTVIPSLAGWIETMW 189
>gi|305664053|ref|YP_003860341.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
gi|304378622|gb|ADM28461.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
Length = 297
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 66/204 (32%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L + + + +F+I I I+ + + I ++ + R
Sbjct: 53 LAMLVSLIAVFIISSIYTIYVFGIAIPIAITASAILSIATIFLVLAMVIAIPRIMYSNRS 112
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++ L + + SG+ I R+ +G S E+ +
Sbjct: 113 RILESKAILLLMAISLLSASGLDIYSVFERIPNILGESYKYFSIEIDRARYMVRAGIPID 172
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
F + T +R L R G +G + +++ S +E E+ A +L
Sbjct: 173 KVFSDIARITPSQILRELFSGLSSFSRVGGDLGKVVEGVLTRYISRYELEVERIANTLSV 232
Query: 297 KLTVPMIIFFLPVLILVIIGPAIL 320
+ + I L +++ + L
Sbjct: 233 YTEIYVAISLLIPVLIGSLAMIFL 256
>gi|261402628|ref|YP_003246852.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
gi|261369621|gb|ACX72370.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
Length = 562
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/215 (15%), Positives = 79/215 (36%), Gaps = 9/215 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ +FL + I F L + F ++ G + P + S
Sbjct: 295 FKWKPVHFITLFLWMLSIVFFILFFLRKSLFMFHGTDFLMFGILFLILPFILTSYWHFII 354
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ ++ +P L+ L + V SG+ I +A++ A+ PL++ + ++S+
Sbjct: 355 ENQKEKYYPIFLNDLTMAVRSGMDIIRAMQVCAK---TNYGPLTKIVKKMAIQMSWGRPV 411
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
FE+ + + L + G I D L + M+ E
Sbjct: 412 NEVFEDLERTEKSLIAKRIASILKECAVSGGDIKDILTSVTVHAYKLSEMKREI-----S 466
Query: 296 PKLTVPMIIFFLPVLILVIIGPAIL-SIIDTMKDH 329
+ + +++ +L + + ++ S++ T+ +
Sbjct: 467 ARQFIYVVVIYLSFFLYLGTSYIMIHSLLPTLLKN 501
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/235 (13%), Positives = 78/235 (33%), Gaps = 10/235 (4%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
DE L AG ++ S + + + + +I L+ + + A+
Sbjct: 7 EDEKFDEILLKAGVKAVSSTY-------LPVVFLTAIIVGFILFIIFLIIFNILYAIFAL 59
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I ++ ++ L +++ SI P A + + I + + +++
Sbjct: 60 IGGVFIVILVGVLYPYVLAEEKAKSIDENLPYAFAFISALSSANIPVVEIFTSLSK--ED 117
Query: 214 QSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+SEE + + F + F T + + ++ S G + +
Sbjct: 118 IYGGMSEEAKEIVKDTKVFNYDIITTFLRRARITPSKKLSSVYYNIVASLIVGAEMKNIF 177
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ +R +E + + +I + L +V+ P SI ++
Sbjct: 178 HEIYDRLMEDRKLELLEAIEKVEILSEFYVIACGMIPLFVVMTVPVASSISAILQ 232
>gi|238755455|ref|ZP_04616795.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
gi|238706296|gb|EEP98673.1| hypothetical protein yruck0001_3320 [Yersinia ruckeri ATCC 29473]
Length = 165
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + SG +++Q L R ++I G L E L L+ ++ F + Y +
Sbjct: 1 MNMAASSGANLNQILERCGKEIQG---ELGNEFNLIYRRLNLGEAPEIVFNDAYRKFNYA 57
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
T ++ + + G + D ++ + ++ K + ++T ++ +P+
Sbjct: 58 EFHFFTSVILLNIKQGGQLSDLIKKMHKGITESNKLKQRKAIMTAQIRMT-TNVVSLIPI 116
Query: 310 LILVIIGPAILSIIDTMKDH 329
+ + + I+T+
Sbjct: 117 VFTAFLYYIDPNSIETLWSQ 136
>gi|145294434|ref|YP_001137255.1| hypothetical protein cgR_0389 [Corynebacterium glutamicum R]
gi|140844354|dbj|BAF53353.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 191
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+++G++ A + VA L +A LS + AF
Sbjct: 55 IELFSACLDAGLNTRDAAQVVAHVAAKTHREL---WTHVVALLSIGVSAPQAFALMA--- 108
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D + S R G+++ D R + + + + A G + +P+ + F
Sbjct: 109 GVDGLDELANLATVSHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIAMPLALCF 168
Query: 307 LPVLILVIIGPAILSI 322
LP ++V + P +LS+
Sbjct: 169 LPAFMIVGLAPVVLSL 184
>gi|238062254|ref|ZP_04606963.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149]
gi|237884065|gb|EEP72893.1| hypothetical protein MCAG_03220 [Micromonospora sp. ATCC 39149]
Length = 245
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+FG L+ + ++ ++R+ P A DLL +
Sbjct: 59 LFGLAVLVVLGGWSGLLGGVVAAVAADRGLRRIEPPAARERRLREAADLPLAADLLAAAM 118
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+G S+D+++ VA+ +GG PL++ + L Q A+ + +
Sbjct: 119 RAGASVDRSVLAVADALGG---PLADRLGRVGRTLLLGGGPQEAWSHL---LPVPGAERL 172
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A ++S G ++ +L L + R++R AE A G + +P+ + FLP IL
Sbjct: 173 AGAALRSSNSGAALAGALTRLADDLRADRSTAAEAAARRAGVLIVLPLGLCFLPAFILAG 232
Query: 315 IGPAILSII 323
+ P I++++
Sbjct: 233 LVPVIVAVL 241
>gi|296453319|ref|YP_003660462.1| hypothetical protein BLJ_0138 [Bifidobacterium longum subsp. longum
JDM301]
gi|296182750|gb|ADG99631.1| conserved hypothetical membrane protein with unknown function
[Bifidobacterium longum subsp. longum JDM301]
Length = 200
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L +L + + G SI +AL V + +GG M L+ A+
Sbjct: 45 WTILILRMLQVSLRQGSSIPRALDMVGKAVGGDCGA---RMSEVGNSLTRGVPWADAWHA 101
Query: 242 FY----------------NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
T + AL S +G G L + + +
Sbjct: 102 AMAVQHEGAPADSPSKGNTNTTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERA 161
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 162 AIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|146296450|ref|YP_001180221.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410026|gb|ABP67030.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 303
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 20/226 (8%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
E I +L+AA + S + ++ L + IL +I ++
Sbjct: 56 YEKIDRQLKAAEL--KVSTDDFIMYYLYFAVFCFILAVIL-------------NQLTYFF 100
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+I + + + R+ + + + + I + ++ L++
Sbjct: 101 VIVVCSTIGIKIILDYISTSRRFKFELKFGEFTQSVAIMLRGTPNLMSVLQQAMN--EET 158
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLR 273
L E+ + + E+ + A + F R V +++ ++ G S+ D
Sbjct: 159 DSKLKMELEMIVQEVQSGTTLEQALKKFKERNNFSSVVGTWVDSIVFANLSGASLSDVCM 218
Query: 274 VLVSETRSE--RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + R +KK A L + + I L ++ ++ P
Sbjct: 219 NAARKINDKLSRARLIKKKTARLKSVMLAIIGIITLTLVFILFFFP 264
>gi|314957235|gb|EFT01339.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
Length = 228
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 79/217 (36%), Gaps = 8/217 (3%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--GAVILIGYVGFCAPSVWIS 169
+ RL+ +I IL + + L + + + G+ P+ +
Sbjct: 16 TPEAFYGRRLICALIGAILPWLLNAVAIAVGANSPNLLIPSALCVALAGAGWMLPAARLK 75
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
A +DL+++ + + AL A PL ++ +
Sbjct: 76 AAAGPTNDDSFEALLVFIDLVVLERLANETSVDALTNAANM---SDSPLFVQIRQVLNRA 132
Query: 230 SF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
S + + ++ + + + G S+ DS R V+E R L+ +
Sbjct: 133 SLENVDPWNGLDRLAEDIKLPELTDVVSIARLQNE-GASLVDSFRARVAELRDAYLLRLQ 191
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+++ ++ +L + I+ ++L+++G A L++I
Sbjct: 192 QESTAITQRLGLWTILQA-GSVMLILLGAAALTLITA 227
>gi|292655314|ref|YP_003535211.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291371306|gb|ADE03533.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 680
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 102/304 (33%), Gaps = 15/304 (4%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
L + + + + + V++ ++ E+ S E + L+ QQ L
Sbjct: 301 LLYATVYGLIPLTGVGFLVLVSTVKQDEIGDGFLSPDDESDRLQGQQREGLVHMGL---- 356
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
+ F +K+ LR + L + + + L + +
Sbjct: 357 ---VESYVGEFSLFSRIKSREGTFKTRELLRRPHLFFKRHPLFTLALTVPAALALLGVSV 413
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCA--PSVWISNLVQKRQSSIKRAWPDALDLL 190
G I + P +++I D L L
Sbjct: 414 AGGAAPTTWDGMIANPVWGTFIWFYVPVYLVAVPLTAFHEWNVHSRAAITGKLSDNLRKL 473
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++G ++ ++++ V+ S L++E + A++ + + + A F N+ +
Sbjct: 474 SSANDTGQTLLESIKTVS---DTSSGKLADEFEVMHAKVHYGMSLKEALVEFNNKYHIPR 530
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + + ++ + I + L + ++ +E E+ + ++ V +I+ L
Sbjct: 531 LARTVKLITKAQEASSQITEVLTTAAQASENQDDIERERISR---TRMQVAIILMTYVTL 587
Query: 311 ILVI 314
+ V+
Sbjct: 588 LAVM 591
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/267 (10%), Positives = 67/267 (25%), Gaps = 36/267 (13%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ R + + L + +I KL+ A R ++ + L L
Sbjct: 5 DSRTSGGLDRSTDTLGDAFYPLFQLLFDEDGEFVSDIETKLQQA--RMPDTVELYLSRAL 62
Query: 122 VVPIIFLILGIIWIFGYD--------------------------------KLLEYPFQLR 149
V ++ ++ + +
Sbjct: 63 AVGVLVGLVSWLVGMLVGYGVFALGLVSADSVSLGIPVGSEATADTLRSLAMPAAVVVSG 122
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ L GF + R+ I DA+ + G++ + L +A
Sbjct: 123 LVFGSLGFAGGFGTLVAIPYSTASARKREINMLLSDAVSFMYALSVGGLNQLEILEAMAR 182
Query: 210 DIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
+S E + E + + + A T D + ++ G +
Sbjct: 183 A-EDTYGEVSREFQSIVQETEYFGTDYRNAIRQQALLTPSDELSQFLTDMLSIVNSGGDM 241
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLG 295
L + + E+ ++
Sbjct: 242 QGFLDDKKDKHLRTAKQQQEQTLETME 268
>gi|317489755|ref|ZP_07948254.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
gi|316911101|gb|EFV32711.1| hypothetical protein HMPREF1023_01953 [Eggerthella sp. 1_3_56FAA]
Length = 322
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 3/187 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L+ I + V I + VW+ + KR+ +++ PDAL
Sbjct: 95 LLSVWIAAMVGAGMCAGAAAGSVVCGITVAVCACACAVVWLRTVQDKRRDALREGIPDAL 154
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ +C ++G+S+ Q ++VA ++ G PL +L A E +
Sbjct: 155 RSMAVCFQAGLSLLQTFQQVASEVQG---PLGTLFARAAHQLETGEGAGRALEVLRRGSS 211
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + AL + G S+ L +SE + + + KL+ ++
Sbjct: 212 VAELAFVAVALDVQHQAGGSMKQVLDAARDTVQSEIELRRALRVQTAQAKLSARVVSVLP 271
Query: 308 PVLILVI 314
VLI V
Sbjct: 272 FVLIAVF 278
>gi|296268209|ref|YP_003650841.1| type II secretion system protein [Thermobispora bispora DSM 43833]
gi|296090996|gb|ADG86948.1| type II secretion system protein [Thermobispora bispora DSM 43833]
Length = 260
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P A+DLL+ C+ +G +D+A+ A+ IGG PL+E M +L + A+
Sbjct: 120 LPFAIDLLVACLRAGQPVDRAVEVTADAIGG---PLAERMSWVAVQLRLGADPGTAWAGL 176
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +I++ + G + D L L + R + A +G ++ P+
Sbjct: 177 A---DEPPAAPFARTMIRAAKGGAPVADVLVRLADDARQAARAASSAAARKVGVQVVAPL 233
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ FLP +L+ I P I +I
Sbjct: 234 GLCFLPAFVLLGIIPMIAGLI 254
>gi|293189315|ref|ZP_06608038.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
gi|292821778|gb|EFF80714.1| putative bacterial type II secretion system protein F domain
protein [Actinomyces odontolyticus F0309]
Length = 291
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 72/208 (34%), Gaps = 9/208 (4%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ + + + I + I + + + + + + + P W+
Sbjct: 44 DVARARIPGLTAARLIALSLGVAIVVALVILAVTGAWPVALIVSVGVA----FMPYAWVV 99
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ + +++ AWP+ +D ++ V +G ++ Q L + VP+ +
Sbjct: 100 SRLGAHAKTVRAAWPEVIDAMVSGVRAGTALPQVL---CDLADEGPVPVRFAFEAFSRDY 156
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAE 288
S ++A + +AL + G + L+ L S R + + E
Sbjct: 157 SANGRFELALDTMKETVADPVADRIVEALRIARSVGGADLTRLLQDLASLLREDARVRGE 216
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIG 316
+A + + P ++L+++
Sbjct: 217 LEARQSWTVGAARLGLAA-PWVVLLLLS 243
>gi|167044732|gb|ABZ09402.1| putative bacterial type II secretion system protein F domain
protein [uncultured marine microorganism
HF4000_APKG7N23]
Length = 255
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 6/173 (3%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
+ ++ VG+ +R ++ WPD L L + +G+ ++ AL
Sbjct: 19 FIVWIGFGILAIVGYLI--YIPKKRKLERIKELEDTWPDVLADLSEELRAGMGVESALDS 76
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+A ++ + + ++++ +A +NF +++ + L +
Sbjct: 77 IAN---RRNDRMGLMLRDAVSDMRDN-GFGIAMKNFAAKSESAMISRIVSILNVALASSG 132
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
SI +L + E ++ E+ A + G + L L+L I
Sbjct: 133 SIATTLENISEEFWEIYMLRKERIAKTQGTANFILWGGSILCPLMLGAIVAIF 185
>gi|307721764|ref|YP_003892904.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
16294]
gi|306979857|gb|ADN09892.1| Flp pilus assembly protein TadB [Sulfurimonas autotrophica DSM
16294]
Length = 311
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 17/217 (7%)
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
I + AG R + + + FLI + +F + +
Sbjct: 68 IQALMIQAGLRFSP----YIFALIFLAFCFLIGSLFTLFLLHWSGYF----------IGI 113
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
G + + +++Q R+ +A A+ +L+ +++GI +QAL + G +
Sbjct: 114 PFGALIFYMILQSVIQNRKKKFNKALAVAISVLVKMMKNGIGFEQALSKSVSVSGSKL-- 171
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ E AF N +R A+ G ++L +
Sbjct: 172 FRDIFEKFFQE-KNTIGEMEAFSNLNQFVHSKELRIFALAIKIGRESGGQFSNTLEKVEK 230
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
M+ + + + +++ L +
Sbjct: 231 TINYREKMQEKVDVVTREGSVGSYVVVLITIFLYFAL 267
>gi|148508014|gb|ABQ75813.1| transmembrane protein [uncultured haloarchaeon]
Length = 674
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 79/280 (28%), Gaps = 31/280 (11%)
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
S L K +L + + KL A R S ++ L L I L
Sbjct: 22 QSFLEASIDKYAYALFGQLFIGNKDSYSDFQRKLNQA--RIPLSHDVYLSRVLFYSIFSL 79
Query: 129 ILGIIWIFGYDKLLE---------------------------YPFQLRVGAVILIGYVGF 161
I+G + +++ + + F
Sbjct: 80 IVGTLVSIIVPLIIQNYAVYLFEGIPGMETVSTAVSIKPVVVVGLISFLIFGLGGFITTF 139
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+ + +R+ I P A + ++I + VAE +S E
Sbjct: 140 VGFILSPMYIANERKRKININLPFATTFMYAMSRGSVTIIDVIEAVAEA-EDTYGQVSVE 198
Query: 222 MLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + + + A +N T + + L+ G+ +
Sbjct: 199 FQSIANSIHYSTNDLRSAIKNEIEITPSAKLSELLEDLLNIIDTGSDMDTFFLHRSETYI 258
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
E E ++ L V +++F + +++I +L
Sbjct: 259 EESKEEQKQILDQLEVLSEVYIVLFVASPIFVLVINVVML 298
Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/237 (13%), Positives = 88/237 (37%), Gaps = 12/237 (5%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--- 150
+ L+ G + Y I V + I + + + + E +
Sbjct: 369 KKQKRRKWLKQ-GLVNSYKTTIERPVYTFIFTIPAAIAAVVFLQENTIAELTHSGFIQHP 427
Query: 151 ----GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
++ I + P V + L Q+ + + R P+A G+ + +
Sbjct: 428 EVNSLYLLYIPSLIAMIPFVILYELQQRNKKVVLRRIPEAFSTAAESNSQGLMLSDSFDV 487
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
VA++ + LS ++ + I E + + + A F N ++ + + + ++++
Sbjct: 488 VAKN---STDYLSSKLQVAINESRWTNSFERALIRFANELEVSRLSRTIKLITKANKLTG 544
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
I +++ + + ++AE + ++ V + + + V I+V + + ++
Sbjct: 545 DIQGVVKIAAKDVKLMAELDAE-RVEQSYMQIIVIFVSYLISVCIIVSLNITFIQML 600
>gi|309802084|ref|ZP_07696194.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
gi|308221285|gb|EFO77587.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
Length = 145
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ P L++L + + G SI AL V +GG E + L+ + A+
Sbjct: 10 ELPMPLVLEMLAVAIRRGASIPHALIVVGRIVGG---DFGEGLSSVGGALNQGVDWDQAW 66
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ D + S G S + L + + + + E+ AA L +L
Sbjct: 67 PS------GDDIALVRDVFAASWSSGASPLNRLDAAIEQLDWDERSQIERDAAKLSIRLL 120
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+P + FLP I V + PAI S +
Sbjct: 121 LPTGLCFLPAFIAVGVIPAIASFL 144
>gi|213691075|ref|YP_002321661.1| conserved hypothetical membrane protein with unknown function
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213522536|gb|ACJ51283.1| conserved hypothetical membrane protein with unknown function
[Bifidobacterium longum subsp. infantis ATCC 15697]
Length = 200
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L +L + + G SI +AL V + +G M + L+ A+
Sbjct: 45 WTILILRMLQVSLRQGSSIPRALDMVGKAVGDDCGA---RMSEVGSSLTRGVPWADAWHA 101
Query: 242 FY----------------NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
T + AL S +G G L + + +
Sbjct: 102 AMAVQHEGAPADSPSGEDTNTTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERA 161
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 162 AIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|311107628|ref|YP_003980481.1| type II secretion system protein F domain-containing protein 4
[Achromobacter xylosoxidans A8]
gi|310762317|gb|ADP17766.1| bacterial type II secretion system protein F domain protein 4
[Achromobacter xylosoxidans A8]
Length = 307
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 66/212 (31%), Gaps = 9/212 (4%)
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
+GF L L +R V + I + + ++L+ +
Sbjct: 63 RSGFSGWDRLLRLAGLRQSVGLYLRIALPVVAGAALAWVLLGPLSGAVTLLLLAVFAYFL 122
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
+ KRQ + P LD ++ + G ++ + + E++
Sbjct: 123 ----LWLRADKRQRRMISQLPAFLDNIVRLLTIG----NSMGAAFQTAAAATDEPLREVV 174
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
T + LS A + + + + R+G L + + R
Sbjct: 175 ETASSLSRSKELDAALAQVSRLYGLKELYMVAAVVSLAMRFGGRSDQVLERMAAFMRDVA 234
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E A+S +L+ I+ LPV I I
Sbjct: 235 QARNELTASSAEVRLSA-WILALLPVGIAGFI 265
>gi|283797115|ref|ZP_06346268.1| conserved hypothetical protein [Clostridium sp. M62/1]
gi|291075532|gb|EFE12896.1| conserved hypothetical protein [Clostridium sp. M62/1]
Length = 290
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 116/312 (37%), Gaps = 25/312 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + +F A+ + L + L R+ ++ + +L +++++ S++
Sbjct: 1 MMGLLFLFGCFLALGLFFLAAAAL--RLPTIGAAKAML-----GTVKQERKSAKTLETGL 53
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
++ + K + N L+A G + + ++ ++ +++
Sbjct: 54 MTVAVRLAKHIRMDEYKRGRMANVLKAGGINVTPEVYQAYALTKAGAVLLGVIPCVFLLP 113
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
V+++ + + + ++ ++ I+ P + + ++S
Sbjct: 114 LLSP----------IVVILAVLLYFKETQKADEKLKAKREEIEGELPRMVATIEQELKSS 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++ L R + G L+ E+ + +A++ N + A F R + + +
Sbjct: 164 RNVIGMLERFKTNAG---PALTGELDILLADMRS-SNYEAALTRFEARLNSPMLSDVVRG 219
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVI 314
LI R G ++L + + L + +A + PK+ + M++ FL + +I
Sbjct: 220 LIGVLR-GDDSVVYFQMLAHDFKQIELQRLKAEAQKIPPKIRVFSFAMLMCFLLTYLAII 278
Query: 315 IGPAILSIIDTM 326
A+ S+
Sbjct: 279 CYVALESLGGMF 290
>gi|154508104|ref|ZP_02043746.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
17982]
gi|153797738|gb|EDN80158.1| hypothetical protein ACTODO_00597 [Actinomyces odontolyticus ATCC
17982]
Length = 425
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/280 (19%), Positives = 92/280 (32%), Gaps = 20/280 (7%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ A R + A+SR+ F L V + I + +
Sbjct: 148 LDEWARAPTRWRSLRRVERAPGVAASRVSAASVALACRFSHDLGAPLADVLDAIGSAIDD 207
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
A E + + L+ + L ++ I L P+Q +G
Sbjct: 208 A-QALEEARRVAAAGPLMSARVLAALPLVGIACALALGASPWQFYMGGAAGRMCAFVGVA 266
Query: 165 SVWI------SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
+ L + R+ A DL+ + G +I +AL +A+
Sbjct: 267 AWAAGVASCRRILARCRRVEEGIDGALACDLVASALACGAAIPRALDALAD------AST 320
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN-ATQALIQSDRYGTSIGDSLRVLVS 277
+E + A L A+E + AL S GTS L +
Sbjct: 321 TEALTWAAASLRLGATWADAWE------DTPEWSHPLRDALEASWTSGTSPETLLARSAA 374
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
R RL++A+ +A L +L P+ +FFLP + + I P
Sbjct: 375 WERRSRLVDAKAQAEELSVRLVGPLGVFFLPAFLSLGIAP 414
>gi|311697135|gb|ADQ00007.1| type II secretion system protein [marine bacterium HP15]
Length = 305
Score = 57.1 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 3/186 (1%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ + LL + A W ++++ I P LD
Sbjct: 79 AAFLAVLAVIGLLMIGMTRGWIEAGAGLFFIVTAAVTWWRVTFERQRRQIFEELPSILDG 138
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ + G S++Q++ D PL + + + + + F Q+
Sbjct: 139 MIRSISVGRSVEQSVVAAFSDGSPVFDPLIFRLKNAVGQ---GRDYTRVIDEFAALYQIP 195
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A S R+G+S+ L + RS + + E AA+ + T P
Sbjct: 196 DLVQVAIAFRTSSRFGSSLRPVLMEVAKAIRSRQDLRREFMAATAETRFTAVAFAIIPPG 255
Query: 310 LILVII 315
L ++
Sbjct: 256 LAAYMV 261
>gi|307352779|ref|YP_003893830.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156012|gb|ADN35392.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 603
Score = 57.1 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/284 (14%), Positives = 96/284 (33%), Gaps = 24/284 (8%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
D E + I + ++I+ + I + V R+ + + +
Sbjct: 248 QSTIDLLEPLMYIGLPIGASAMIFLLYIMMPPDN--------LEVSRKEITQSEYADTNI 299
Query: 66 DSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPI 125
DS S +L F+K+L K + V K Y ++ +
Sbjct: 300 DSESIQLVDN------KFLKRLQSKKQAIKIKTVLK-----NPLRYYVSDYQYSMVFGMA 348
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ +++ LLE+ + + + I I F P + + P
Sbjct: 349 AAGAVTLLY--MNGYLLEFFPKYTLESFICIVICAFMFPIAFAYEARSWYLKKFESQLPG 406
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + G+++ A+ +A+ + L+ E+ + E+ + A R
Sbjct: 407 FLREISDMKDMGMTLQSAIHIIAQ---SKIGVLTSEVKIASEEIKMGTSVSSALYKLEER 463
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ V+ A +I++ + + L + +S+ M+ E+
Sbjct: 464 IGLVSVKRAISLVIKASEITDHLREILAIAISDLEHYLRMKNER 507
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 13/237 (5%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL-------GIIWIFGYDKL 141
L L E L+ G L++ ++ ++ ++ +I + +
Sbjct: 8 LIKSLNTEEFRRSLK--GSHIPIGAGEYLLILILGTVLAAMVYILLVILLVILEIEINPI 65
Query: 142 LEYPFQLRVGAVILIGYVGFCAP-SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
P+++ V + LI GF ++ + R++ I+ P A+ + + + +++
Sbjct: 66 SFLPYEISVLLLFLILVGGFFLFAYMYPQTVAAGRKTRIELDLPYAVTYM-QALSTTMTL 124
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALI 259
+ V+++ +S+E + I ++ + + A N T L
Sbjct: 125 FSIFKSVSDN-EDLYGEVSKECGMIIRDVEYFGDDLLTAMRNVQESTPSPTFSELLNDLA 183
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G S+ D + R + E E ++ + + F + ++I+
Sbjct: 184 MVFKTGGSMTDFFASKSAHYRETAMQELENTLKTMEIMAEIYVTAFVAGPIAIMIMV 240
>gi|289191837|ref|YP_003457778.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938287|gb|ADC69042.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
Length = 576
Score = 57.1 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 9/215 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ +F + + F + + F L ++ G + P + S
Sbjct: 310 FKWKPIHFITLFFWMLSMIFFLLFFIGKSIFTLHRTDFLMFGILFLILPFILTSYWRFII 369
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ +R +P L+ L + V SG+ I +A++ A PL++ + ++S+
Sbjct: 370 ENQKERYYPIFLNDLTMAVRSGMDIIRAMQVCAR---TNYGPLTKIIKKMAIQMSWGRPV 426
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
F + + + L + G I D L + M+ E
Sbjct: 427 NEVFADLERTERSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKREI-----S 481
Query: 296 PKLTVPMIIFFLPVLILVIIGPAIL-SIIDTMKDH 329
+ + +++ +L + + ++ S++ T+ +
Sbjct: 482 ARQFIYVVVIYLSFFLYLGTSYIMIHSLLPTLLKN 516
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 10/235 (4%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
DE L AG + S L V + II + I + + A+
Sbjct: 22 EDEKFDEILLKAGINAVSS--TYLPVVFLTSIIVGFIMFILFLIL-----FNIFYAIFAL 74
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ +V ++ L +++ SI P A + + I + + +++
Sbjct: 75 LGGVFVTIFLGVLYPYILAEEKAKSIDENLPYAFAFISALSSANIPVVEIFSSLSK--ED 132
Query: 214 QSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S+E + + F + F T + ++ S G +
Sbjct: 133 IYGGMSKEAKEIVKDTKVFNYDIITTFLRRARITPSKKLSAVYYNIVASLIVGAEMKTIF 192
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ ER +E + + +I + L +V+ P SI ++
Sbjct: 193 YEIYERLMEERKLELLEAIEKVEILSEFYVIACGMIPLFVVMTVPVASSISAILQ 247
>gi|309810812|ref|ZP_07704613.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
gi|308435118|gb|EFP58949.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
Length = 206
Score = 57.1 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A L + + + A+ R A + R G + LR + R
Sbjct: 108 RVAAALRWGVDERSAWA-----LAPPVWRPVATAFELAGRCGAAPSSLLRQAADDLRRSE 162
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ A G ++ +P+ + FLP IL+ I P +L +
Sbjct: 163 AERVTQAGAKAGVRIVLPLGLCFLPAFILIAIVPLVLGL 201
>gi|19551553|ref|NP_599555.1| hypothetical protein NCgl0298 [Corynebacterium glutamicum ATCC
13032]
gi|62389200|ref|YP_224602.1| hypothetical protein cg0365 [Corynebacterium glutamicum ATCC 13032]
gi|41324533|emb|CAF18873.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
Length = 191
Score = 57.1 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+++G++ A + VA L +A LS + AF
Sbjct: 55 IELFSACLDAGLNTRDAAQVVAHVAAITHREL---WTHVVALLSIGVSAPQAFALMA--- 108
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+D + S R G+++ D R + + + + A G + +P+ + F
Sbjct: 109 GVDGLDELANLATVSHRSGSALSDGCRNISTSLLASAGDKRTAAAERAGVFIALPLALCF 168
Query: 307 LPVLILVIIGPAILSI 322
LP ++V + P +LS+
Sbjct: 169 LPAFMIVGLAPVVLSL 184
>gi|25026856|ref|NP_736910.1| hypothetical protein CE0300 [Corynebacterium efficiens YS-314]
gi|259506083|ref|ZP_05748985.1| membrane protein [Corynebacterium efficiens YS-314]
gi|23492136|dbj|BAC17110.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166371|gb|EEW50925.1| membrane protein [Corynebacterium efficiens YS-314]
Length = 205
Score = 56.7 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 6/134 (4%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L C+ +G+S A +A + T+A L + AF T +
Sbjct: 70 LFAECLAAGLSTRDAAHLLAC---TANPAHQRLWEETVALLGIGVGPEKAFTTM---TGV 123
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
D +R+ S R G++ + + A G + +P+ FLP
Sbjct: 124 DGLRDLAVLAEVSHRSGSAFSQGCHRIADALVASAADHRTAAAERAGVFIALPLAACFLP 183
Query: 309 VLILVIIGPAILSI 322
+++ + P +L +
Sbjct: 184 AFMIIGLAPVVLGL 197
>gi|302388992|ref|YP_003824813.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
gi|302199620|gb|ADL07190.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
Length = 274
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/237 (14%), Positives = 87/237 (36%), Gaps = 16/237 (6%)
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ E I L+AAG + ++ R + +I+++
Sbjct: 51 RRDILERINANLKAAGRPLGLTAEAYILARA----GLFLFSLIYVYLTHMEGIQ------ 100
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
+++ ++G ++I ++R + +R P+ +DL + + + ++ AE
Sbjct: 101 --AVMMLFLGLFGLDIYIHFAKKERLEAFRREMPEIVDLFELGAAADVPLEDIFLITAES 158
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
+ + + AE ++ F N + AL+Q +R G ++ +
Sbjct: 159 AQTK--EVRNALTRLAAEYVMTREKEGCLRRFCNEVNLPEANILAMALLQGERTGRTL-E 215
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
L L S + + ++ ++ K+ F + ++ + + P +I +K
Sbjct: 216 ILSTLSSSLFNTATAKIARQDKAMEYKVLAAT-FFLMASIVTLYMYPYFTNIQGGLK 271
>gi|187478774|ref|YP_786798.1| pilus assembly protein [Bordetella avium 197N]
gi|115423360|emb|CAJ49894.1| putative pilus assembly protein [Bordetella avium 197N]
Length = 282
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 9/195 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + L + + + G+ L A + P++
Sbjct: 42 HGLREVFLFLDPTQLWGMAMICAGLTLGVILAAGGHPAMALAAAAFA------WRLPAIS 95
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ L Q+R ++ P L L + +G S+ ALR++A+ PL++E+ L +
Sbjct: 96 LRRLRQRRLERLQAQLPAGLLSLASALRAGASLPAALRQLADLAQ---PPLAQEIGLMLR 152
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
E + A R + VR T A + G ++ +L + R + L E
Sbjct: 153 EQRLGVSFDDALHRLECRVDLPSVRLMTAAFRVAGSAGGNLAQTLEGIAQALRGQLLAEG 212
Query: 288 EKKAASLGPKLTVPM 302
KA + ++ +
Sbjct: 213 RLKALTAQGRMQAWV 227
>gi|325964625|ref|YP_004242531.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470712|gb|ADX74397.1| type II secretion system protein F [Arthrobacter phenanthrenivorans
Sphe3]
Length = 204
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+L+ +++G SI +AL V+ + + ++ L+ + + A+ + R
Sbjct: 69 MLELVAAMLDAGSSIGRALELVSGSASDRY---CRALRPVVSALAIGADWETAWRSSAVR 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ V AL + G L + R ER AEK+AASLG KL VP+ +
Sbjct: 126 --LPEVLELRDALGFAALTGAPSSAILYAQAARLRRERFRAAEKRAASLGVKLVVPLGLC 183
Query: 306 FLPVLILVIIGPAILSI 322
LP I + + P +L++
Sbjct: 184 SLPAFICLGVVPVLLAL 200
>gi|311744547|ref|ZP_07718347.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312166|gb|EFQ82083.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 82/201 (40%), Gaps = 8/201 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L++G++ + ++ +P+ VGA + + Q+RQ+ + R P A
Sbjct: 39 GLVVGVLTVGTGIVVVGWPWGAVVGAAAVPTVR--RLVDRAGTTARQRRQAEMVRLLPAA 96
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDL++ +E+G S A PL+EE+ L + ++
Sbjct: 97 LDLVVTALEAGRSPG---GAFAVVADAAPAPLAEELRGLARRLEVAADPLDVWDAL---V 150
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + +AL +S+ G + + + R R E ++ S+G P+ + F
Sbjct: 151 RDPTLAPVGRALRRSEVTGMPAARVVARVADDLRRTRRAEIAHRSRSVGVATAAPLGLCF 210
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LP LV I P ++ ++ +
Sbjct: 211 LPAFFLVGIVPTVVGMVRVVA 231
>gi|228918238|ref|ZP_04081739.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228841415|gb|EEM86557.1| hypothetical protein bthur0012_54160 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 210
Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 18/217 (8%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L +++ P+IF + +I +D L +LI + + P + +
Sbjct: 5 PEEYLKMKVAYPVIFTSVFLICTVFHDYYLFK-------VGVLISPLLYFYPDYLLKKRI 57
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++ + K P+ L +L +++ +++ + A+ G+ L + AEL
Sbjct: 58 KQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMY 113
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
F NF V T AL Q+ + T SLR++ ++ + R ++ E
Sbjct: 114 AGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNR 171
Query: 293 SLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
+ K PM + V ++ ++I P ++ I M+
Sbjct: 172 LIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 205
>gi|160878996|ref|YP_001557964.1| hypothetical protein Cphy_0838 [Clostridium phytofermentans ISDg]
gi|160427662|gb|ABX41225.1| hypothetical protein Cphy_0838 [Clostridium phytofermentans ISDg]
Length = 511
Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/233 (12%), Positives = 76/233 (32%), Gaps = 11/233 (4%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + L G ++ L R++ + L +W + L + V+L
Sbjct: 278 EKLRISLIQVG--ETMDMSEFLCKRIIYGFLGFSLSFLWTLFFLMYLWK--IKIIFLVLL 333
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ F P + V+ + ++ +L++ + + + E + S
Sbjct: 334 STLLCFFLPVWVLKYRVRLAKVYMEDEVFQFQAILMMVMYMDRI---STFELLEIMEDFS 390
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ +++ + + + A T + LI D G + +L +
Sbjct: 391 IIFKKQLRQCLLDYDVGQ--KEALLQLKENTYCEAFHRLIDNLIMCDDIG--VTKALDEV 446
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E + ++ L K + + FLP++ + + + + ++
Sbjct: 447 ALEIQFYSEKRQQQTNYQLEQKGILCRFLSFLPLVTTIALYLILPFVTVSLSK 499
>gi|291520243|emb|CBK75464.1| Bacterial type II secretion system protein F domain [Butyrivibrio
fibrisolvens 16/4]
Length = 132
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 198 ISIDQALRRVAEDIGGQ------SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+S +AL R+ + P EE+L T ++ A E ++
Sbjct: 1 MSFRKALERIVKRYSDGVNNGQEKRPGFEEILKTYRKIVDGKGEIQALEELGKSSECKEY 60
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
R + L+Q+ + G+ + +SL S R A + KL +P+ L ++
Sbjct: 61 RKLSMLLVQNLKKGSKDLLESLEKEESAAFEMRKQRALRLGEEASTKLLIPL-AGMLFLV 119
Query: 311 ILVIIGPAILSI 322
I+V+I PA++ +
Sbjct: 120 IVVLIVPALMQV 131
>gi|229819119|ref|YP_002880645.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
gi|229565032|gb|ACQ78883.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
Length = 179
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ +++ A +L+ +++G ++ AL + I G + L +
Sbjct: 34 RRAVRVDAAVACELVAAVLDAGAAVPTALDALGRAIDGDDG---RALRSCGGALLLGASW 90
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A+ R + +AL + G + G +LR R+ R A++ AA LG
Sbjct: 91 SEAWSGVPGRWAIVE-----RALEPAWTDGVAPGPALRAAADGVRARRAELAKEAAARLG 145
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+L +P+ + +LP +L+ + P +++ ++
Sbjct: 146 VRLVLPLGLCYLPAFVLLGLLPVVIATGGSL 176
>gi|256810062|ref|YP_003127431.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256793262|gb|ACV23931.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 576
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 10/235 (4%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
DE L +G + S + ++ + + F+I +++IF + F + V +
Sbjct: 22 EDEKFDEILLKSGISAISSTYLPVIFLTAIIVGFMIFVMLFIFFNVFYAIFGFLVSVFTI 81
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
IL +G P + + + SI P A + + I + + +++ G
Sbjct: 82 IL---LGISYPYIVMEEKAK----SIDENLPYAFAFISALSAANIPVVEIFNSLSK--EG 132
Query: 214 QSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S+E I + + +F T + ++ S G + +
Sbjct: 133 IYGGMSKEAKEIIKDTKIFNYDIITSFLRRARITPSKKLSAVYYNIVASLIVGAEMKNIF 192
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ +R +E + +I + L +V+ P SI ++
Sbjct: 193 HEIHERLMEDRKLELLGAIEKVEILSEFYVIACGMIPLFVVMTVPVASSISAVLQ 247
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/215 (13%), Positives = 76/215 (35%), Gaps = 9/215 (4%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ IF + + F + + F ++ G + P + S
Sbjct: 310 FKWKPVHFITIFFWILSVISFMFFFTKKSIFMFYGEDFLMFGILAAILPFILTSYWQFII 369
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ ++ +P L+ L + V SG+ I +A++ A PL++ + ++S+
Sbjct: 370 ENQKEKYYPIFLNDLTMAVRSGMDIIRAMQVCAR---TNYGPLTKIVKKMAVQMSWGRPI 426
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
F + + + L + G I D L + M+ E
Sbjct: 427 NEVFADLEKTEKSLIAKRIASILKECAVSGGDIKDILTSVTVHAYRLSEMKKEI-----S 481
Query: 296 PKLTVPMIIFFLPVLILVIIGPAIL-SIIDTMKDH 329
+ + +++ +L + + ++ S++ T+ +
Sbjct: 482 SRQFIYVVVIYLTFFLYIGTSYIMVHSLLPTLLKN 516
>gi|88604392|ref|YP_504570.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88189854|gb|ABD42851.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 296
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 38/193 (19%), Positives = 69/193 (35%), Gaps = 7/193 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I I F LL + + +++ + F V+ S + R+ I+ P A++
Sbjct: 69 IAATINEFQGHYLLLGTIIAGIVSFVVLYGITFLIYLVYPSIVAGGRRRDIETTLPYAIN 128
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQ 247
L +GI+ + R++ S E I E+ F + A +N T
Sbjct: 129 YLAAMSTAGITPAEVFRQLGNS--TIYGESSVEARYIILEVDVFGRDLIEALKNVSMSTP 186
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSET----RSERLMEAEKKAASLGPKLTVPMI 303
+R+ Q I S G++I D R + R + + A +T +
Sbjct: 187 SPRMRDFLQGCIGSVAAGSNISDYFRTKAEQYTGENRQTQKQFLDTLALIAESYVTALVA 246
Query: 304 IFFLPVLILVIIG 316
+LI I+
Sbjct: 247 GTLFMILIQSIMA 259
>gi|296242113|ref|YP_003649600.1| type II secretion system F domain-containing protein [Thermosphaera
aggregans DSM 11486]
gi|296094697|gb|ADG90648.1| Type II secretion system F domain protein [Thermosphaera aggregans
DSM 11486]
Length = 581
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 89/252 (35%), Gaps = 12/252 (4%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + + + +LR + + L++ L+ + G+ +
Sbjct: 5 DFIYRYFGDYADQVLRASPGVAKQLRRSNIHLHAEVYASLILFLLTLSAGIAAGVGVLVF 64
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + I + V + + S + R S+I +P + L I V SG
Sbjct: 65 FLGYH-----VFIPFFIALPVVVYLIMIIIPSMVAGSRASAIDGEFPYTISYLSIMVMSG 119
Query: 198 ISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+S A R+ + I ++ L++ +L L + AF +R VR
Sbjct: 120 LSPYIAFERILKGSIIFQKTGELAQRFVLLNKIL--GKDPLTAFAMLSDRNPSSRVRETL 177
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLIL 312
I + + G + D L ++ L+ + A LG L +++ + +L
Sbjct: 178 SGYISTVKAGGDVIDYLNKRARALFNDLLVSMKIIADRLGGLLESYLAIVLLTMISFTVL 237
Query: 313 VIIGPAILSIID 324
+ + +I
Sbjct: 238 YFVTASYSGVIS 249
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 64/186 (34%), Gaps = 5/186 (2%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + + + + + PS+ + + + + I DL+
Sbjct: 330 FLTLPMKLADIPPNLTFVESSIALSMALIVSIIPSLIYAEYIAREYTIINGITRFIRDLV 389
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ ++G+ ++++ ++ S+ + EL+ + + E + + +
Sbjct: 390 EV-RKTGLPPEKSIIELST---RDYGVFSKYLKKISLELTLGVSLRKIIEELFKKIKPWR 445
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L S G D L L S +EAEKK S+ + VP + L
Sbjct: 446 AKVLLFILTDSIEVGGGTVDVLENLAWFAESIEAIEAEKK-RSMRTLMIVPYLGAVLTAF 504
Query: 311 ILVIIG 316
+V +
Sbjct: 505 TIVFMA 510
>gi|284164351|ref|YP_003402630.1| type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
gi|284014006|gb|ADB59957.1| Type II secretion system F domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 536
Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/201 (19%), Positives = 81/201 (40%), Gaps = 10/201 (4%)
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQL---RVGAVILIGYVGFCAPSVWISNLVQKR 175
+ L + + + G++W F + + +L+ GF P ++R
Sbjct: 258 LSLAITVPIALAGVLWQFPAALEGGFDVAAIDDAIAVGLLVVLTGFAIPY----EGHRRR 313
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+++ A PD LD L E+G+S+ A+ V G + PL E+ A++ + +
Sbjct: 314 IDAVEAAVPDLLDRLASVNEAGMSLVSAVDYVR---GSELGPLGAELDRVWADVQWGADL 370
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
Q AF R + L ++ ++ LR+ + ++R +E E+K A +
Sbjct: 371 QTAFARLERRVRTRTTARVVTLLTEAMNASGNLATVLRIAARQAAADRRLERERKQAMVE 430
Query: 296 PKLTVPMIIFFLPVLILVIIG 316
+ V + +I V+
Sbjct: 431 YTIVVYVSYLVFLFIIAVLAA 451
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 3/140 (2%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQ 247
L SG++ + +R VA +EE + + + F + A + R+
Sbjct: 17 FLYALSRSGMAFPKVIRVVAAH-EATYGEAAEEFDVAVRNMDTFGVDVVTALQTMGRRSP 75
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM-IIFF 306
R ++ L+ + G S+ D L + + E E+ L + ++
Sbjct: 76 SPQFREFSENLVSVLQSGHSLLDFLERQYRDYQEEAESHQERTLGLLSTLAEAYVTVLVA 135
Query: 307 LPVLILVIIGPAILSIIDTM 326
P+ ++ I+ +++ DT+
Sbjct: 136 GPLFLITILVVIGIAVGDTL 155
>gi|228918640|ref|ZP_04082073.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228841014|gb|EEM86223.1| hypothetical protein bthur0012_57730 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 210
Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 18/217 (8%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L +++ P+IF + +I +D L +LI + + P + +
Sbjct: 5 PEEYLKMKVAYPVIFTSVFLICTVFHDYYLFK-------VGVLISPLLYFYPDYLLKKRI 57
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++ + K P+ L +L +++ +++ + A+ G+ L + AEL
Sbjct: 58 KQAIEARKFELPEYLIPMLQLLKTHTTLEA--VKKAQIYAGRH--LRPYVSTLTAELEMY 113
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
F NF V T AL Q+ + T SLR++ ++ + R ++ E
Sbjct: 114 AGSDQPFRNFAAALNSPEVNTFTIALQQAQK--TDKVQSLRIMDAQIKMMRELKHENYNR 171
Query: 293 SLGPKLTVPMIIFFLPVLIL--VIIGPAILSIIDTMK 327
+ K PM + V ++ ++I P ++ I M+
Sbjct: 172 LIQNK---PMEMNKFNVAVIGCIVIYPMVIVIQSLMQ 205
>gi|139438671|ref|ZP_01772155.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
25986]
gi|133775751|gb|EBA39571.1| Hypothetical protein COLAER_01156 [Collinsella aerofaciens ATCC
25986]
Length = 308
Score = 56.4 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 46/253 (18%), Positives = 84/253 (33%), Gaps = 17/253 (6%)
Query: 64 QKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVV 123
+ A L T K R V+ LK I + G E + L + L
Sbjct: 32 PAELARQALETVAEKLPRELVENDLLKKIARSWASLAPAHRLGLVIEDASGRLAFLLLSS 91
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++L ++ + L + VGA ++ Q + A
Sbjct: 92 GVCCILLTMVSLSPLGFALGLVAPIAVGAA-------------RDGFESRREQHDAEEAM 138
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+A L + + SG S+ Q +R V P+ E L A + + A ++
Sbjct: 139 PEAFTALSMSLASGHSLAQGMRFVGAHAQE---PVHTEFLRVAAAIDCGISATDALDDLL 195
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
R + T AL S R G + D L S ++ + +++ M+
Sbjct: 196 VRIDAPGLSLVTLALKVSQRTGAPLADLLSEASSMVGERIELKRRLDVKTSQARMSAHMV 255
Query: 304 IFFLPVLILVIIG 316
+P + ++
Sbjct: 256 A-AMPTGMCAVLA 267
>gi|258650978|ref|YP_003200134.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258554203|gb|ACV77145.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 267
Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 9/154 (5%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE------MLLTIAELSFLPNR 235
+LL ++SG+++ ALR V+E +G Q ++ + A L+ +
Sbjct: 117 WLIVHAELLAAALDSGLAMATALRAVSEVLGDQGPSAGQQQSALAALDSVAAMLALGADT 176
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A+ + A +S GT++ D++R ++ R + E+ + A G
Sbjct: 177 DTAWRAVDADADL---APLAAAARRSAVGGTTLADAVREHAAQLREQARDESVRSAGRAG 233
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+T P+ + FLP + + + P +L ++ + H
Sbjct: 234 VLMTAPLGVCFLPAFLCLGLAPVVLGLLGRLTIH 267
>gi|284802132|ref|YP_003413997.1| hypothetical protein LM5578_1887 [Listeria monocytogenes 08-5578]
gi|284995274|ref|YP_003417042.1| hypothetical protein LM5923_1839 [Listeria monocytogenes 08-5923]
gi|284057694|gb|ADB68635.1| hypothetical protein LM5578_1887 [Listeria monocytogenes 08-5578]
gi|284060741|gb|ADB71680.1| hypothetical protein LM5923_1839 [Listeria monocytogenes 08-5923]
Length = 290
Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/314 (10%), Positives = 101/314 (32%), Gaps = 27/314 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + + L + + + + K + + + + +++
Sbjct: 1 MMMLIFLFGILLAFGLFFILA---------DVLKLPYLSATKAMLNTTRAEKKAAKSIEI 51
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + K + N L+A G + I+ ++ + +
Sbjct: 52 YLMTWAVNLSKYIRMDEYRRSRMKNILKATGMNMTPEVYQAYAFVKCGAILLGVIPCLLV 111
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F V+ + + + + ++ ++ I+ P + + ++
Sbjct: 112 FPLLAP----------VVVFLAVMIYFKETRKADEKLKVKRDEIENELPRFVANVEQELK 161
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+ + + ++ G + E+ + A++ + + A F R + +
Sbjct: 162 NSRDVLSIIENFKKNAG---AAFAGELDILAADMRS-SSYEAALTRFEARLNSPMLSDVV 217
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLIL 312
+ LI R G ++L + + L + + +A + PK+ + M++ FL +
Sbjct: 218 RGLIGVLR-GDDSAVYFQMLAHDFKQLELQKLKSEAQKIPPKIRVFSFIMLLCFLLTYLA 276
Query: 313 VIIGPAILSIIDTM 326
+I + S+
Sbjct: 277 IIAYEILKSLGGMF 290
>gi|119025149|ref|YP_908994.1| hypothetical protein BAD_0131 [Bifidobacterium adolescentis ATCC
15703]
gi|154486515|ref|ZP_02027922.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
L2-32]
gi|118764733|dbj|BAF38912.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
gi|154084378|gb|EDN83423.1| hypothetical protein BIFADO_00330 [Bifidobacterium adolescentis
L2-32]
Length = 171
Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 9/179 (5%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ A + + N S P L++L + + G SI +AL
Sbjct: 2 SLAWPMLAAVGAAGATWLYEWSPARNPPDSDVRSCNLPLPLILEMLSVAIRQGASIPRAL 61
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V + G + L+ A+ D A S
Sbjct: 62 ITVGNIVEG---EFGGGLRSAGERLNSGMPWNEAWP------DDDDCAVVRDAFSSSWSS 112
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G+S + L + + + E+ AA L +L +P + LP + + + PA++S +
Sbjct: 113 GSSPVNRLATAIEQLDWDERSRIEQSAAKLSIRLLLPTGLCMLPAFVAIGVIPAVMSFL 171
>gi|15669474|ref|NP_248284.1| hypothetical protein MJ_1286 [Methanocaldococcus jannaschii DSM
2661]
gi|3025058|sp|Q58682|Y1286_METJA RecName: Full=Uncharacterized protein MJ1286
gi|1591923|gb|AAB99288.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 595
Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 11/216 (5%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
+ +F + I F + + F+ ++ G + P + S
Sbjct: 329 FKWKPVHFITLFFWMLSIISFMLFFIRKSIFKFHGTDFLMFGILFLILPFILTSYWHFII 388
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ +R +P L+ L + V SG+ I +A++ A PL++ + ++S+
Sbjct: 389 ENQKERYYPIFLNDLTMAVRSGMDIIRAMQVCAR---TNYGPLTKIVKKMAIQMSWGRPV 445
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
F + + + L + G + D L + M+ E A
Sbjct: 446 NEVFADLERTEKSLIAKRIASILKECAVSGGDVKDILTSVTVHAYKLSEMKREISARQ-- 503
Query: 296 PKLTVPMIIFFLPVLILVIIGPAIL--SIIDTMKDH 329
++ L I I+ S++ T+ +
Sbjct: 504 ----FIYVVVIYLSFFLYIGTSYIMVHSLLPTLLKN 535
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/235 (12%), Positives = 75/235 (31%), Gaps = 10/235 (4%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
DE L AG + S + + + + I L+ + + +
Sbjct: 41 EDEKFDEILLKAGMNAVSSTY-------LPVVFLTSIILGLIIFIIFLIVFNIFYAIFGL 93
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
I ++ ++ L +++ SI P A + + I + + +++
Sbjct: 94 IGGIFIVILIGVLYPYVLAEEKAKSIDENLPYAFAFISALSSANIPVVEIFTSLSK--ED 151
Query: 214 QSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+S+E + + F + F T + + ++ S G + +
Sbjct: 152 IYGGMSKEAKEIVKDTKVFNYDIITTFLRRARITPSKKLSSVYYNIVASLIVGAEMKNIF 211
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ +R +E + + +I + L +V+ P SI ++
Sbjct: 212 HEIYERLMEDRKLELFEAIEKVEILSEFYVIACGMIPLFVVMTVPVASSISAILQ 266
>gi|227832053|ref|YP_002833760.1| hypothetical protein cauri_0223 [Corynebacterium aurimucosum ATCC
700975]
gi|262184093|ref|ZP_06043514.1| hypothetical protein CaurA7_08886 [Corynebacterium aurimucosum ATCC
700975]
gi|227453069|gb|ACP31822.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length = 185
Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 11/136 (8%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L+L C+E+G+S A+ VAE S + A + A+
Sbjct: 56 LELFAACLEAGLSTRSAVLAVAEA--------SPQWSEAAALIGVGVPMNTAWSALA--- 104
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + S G ++ LV++ R+E +A +A G + P+ + F
Sbjct: 105 SQPHLEELVRLTQLSGESGAAMATGCHRLVAQLRAEASAQATARAERAGVFIAAPLAVCF 164
Query: 307 LPVLILVIIGPAILSI 322
LP +++ + P ++S+
Sbjct: 165 LPAFLVLGLIPVLISL 180
>gi|182437111|ref|YP_001824830.1| hypothetical protein SGR_3318 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465627|dbj|BAG20147.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 280
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 74/226 (32%), Gaps = 13/226 (5%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + ++ R W L + +G + W
Sbjct: 53 RPGWGSRLVAPFRASGASGLPESARRWAAPVGSCLAGWILVGGAMGCAVGSIAAYGMWRW 112
Query: 168 ISNLVQKR-------QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ R ++ I P A DLL C+ G +A AE P+ +
Sbjct: 113 GRTRPRARPGGAHPERAVIAGQLPLAADLLAACIAVGAGPREA---AAEVGDSIGGPVGD 169
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ T AE+ A+ F + + L ++ G + + L + R
Sbjct: 170 RLARTAAEIRLGGEPAEAWGRFGE---IPGAGPLARCLHRAGSTGAPAAEPVARLAASIR 226
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ER A +A G +T P+ + FLP + V + P I+ + +
Sbjct: 227 AERAAAAVARAQRAGVLITAPVGLCFLPAFLAVGVAPVIIGLAGDL 272
>gi|124486353|ref|YP_001030969.1| hypothetical protein Mlab_1538 [Methanocorpusculum labreanum Z]
gi|124363894|gb|ABN07702.1| type II secretion system protein [Methanocorpusculum labreanum Z]
Length = 601
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 86/219 (39%), Gaps = 6/219 (2%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGY--DKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + + + II ++L + + + + + ++ I + P +
Sbjct: 329 RHPIKFFISDYTIPGIIGVLLASLVGVSWITGTFAKIFPSMTMEVLVCIIIIAASLPLMM 388
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ ++ + +++ P+ L + + G+++ A+ ++ G ++ LS E+ +
Sbjct: 389 AYEIRRRYVTKVEKQLPEFLREIADMRDIGMTLQGAISMIS---GNKTGVLSSEIKIVTK 445
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
ELS+ + A R + V+ A L+++ + + L + +S+ M++
Sbjct: 446 ELSYGAHLSNALVRMEERIGLVSVKRAISLLVKASEVTDYVREILTIAISDLEHYVKMKS 505
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L V + F + + + A +S +
Sbjct: 506 K-RLNVSFVYLAVIYLSFGIYLYSAYQMNVAFISSFTSF 543
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 13/236 (5%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L IL + + N LR+A ++ +++ ++V + I+ + + +
Sbjct: 8 LDKILFNTKLENALRSA--HITVPVDQYMMLTILVTVFTGIMTALIGVLITVMGITIPVI 65
Query: 149 RVGAVILIGY--------VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
V ++ F + Q R++ I++ P A+ + + S I++
Sbjct: 66 SFLPVWILIIISCILIPIGVFICFYYYPVLEAQGRKNKIEQDLPFAITYM-QALSSTITL 124
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALI 259
+ R V E +S E L + ++ + A EN T + R L
Sbjct: 125 YEIFRSVYEA-ADLYGEVSRECGLIVRDVELFGEDLLTAIENTIKITPSENFRELLNDLA 183
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R G ++ + R + + L V + F + ++I+
Sbjct: 184 LVYRSGGNMRNFFNSKSESYREIARQQLDALLQFLEMIAEVYVTAFVAGPIAIMIM 239
>gi|119719714|ref|YP_920209.1| type II secretion system protein [Thermofilum pendens Hrk 5]
gi|119524834|gb|ABL78206.1| type II secretion system protein [Thermofilum pendens Hrk 5]
Length = 295
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQ----------LRVGAVILIG 157
E + L++ V ++ + + + L Q LRV ++
Sbjct: 3 YIEMTPQRRLMLLAVGAMLGAVPLFLVASLFRGELLSSIQNAGGVYLVTSLRVNVLVTFS 62
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
V F P ++ L + S++ P+ L V SG+++ +AL VAE +GG
Sbjct: 63 LVLFTLPYAFVDYLNRSFTRSVESVLPELFKGLAEAVRSGLTLPEALSSVAETLGG---E 119
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+ + + + Q A ++R ++ + L+ + G + D+L
Sbjct: 120 VGKMLRQVVLLTEMGVTFQEAIARAFSRYRLPSLDRLGSILLTAYESGGKVIDALETSAQ 179
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ R E E++A ++ P + L V++ + I + + ++
Sbjct: 180 IFGAIRSYE-EERATTINPHVLTIYAATILYVILSLTILYVFVMPLSRLQ 228
>gi|291517620|emb|CBK71236.1| Bacterial type II secretion system protein F domain
[Bifidobacterium longum subsp. longum F8]
Length = 200
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L + + + G SI +AL V + +GG M L+ A+
Sbjct: 45 WTILILRMSQVSLRQGSSIPRALDMVGKAVGGDCGA---RMSEVGRSLTRGVPWADAWHA 101
Query: 242 FY--------------NRTQ--MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
RT + AL S +G G L + + +
Sbjct: 102 AMAVQHEGTPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERA 161
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 162 AIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|226309740|ref|YP_002769634.1| hypothetical protein BBR47_01530 [Brevibacillus brevis NBRC 100599]
gi|226092688|dbj|BAH41130.1| hypothetical membrane protein [Brevibacillus brevis NBRC 100599]
Length = 279
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/239 (11%), Positives = 75/239 (31%), Gaps = 17/239 (7%)
Query: 82 NFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+ K D+ L AG + + ++L+ + IL ++W+
Sbjct: 42 WWEKWEQALKPDEDDKWEQLLSRAGRPFGWGKPEWVFLQLLTGSMVCILVLMWVVVSRVE 101
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ ++ L + P + + R+ + ++ + +E+ + I
Sbjct: 102 S-----FPLLSMCLASAGSYMLPYMGLKTWANHREDMLSTDIARFINRYVTLLENQVPIY 156
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ + A P + + + A E+F + +D ++
Sbjct: 157 NAMVKAAR-------PTRKLKEYIPTLSEWNRDPNEALESFKRKIGVDDGIILVSSMRTI 209
Query: 262 DR-YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ + +++ + R+ KK SLG + + P + ++
Sbjct: 210 ETLSEGQVSATMQRMEWAVDHRRMFRHRKKIKSLG----IGYTVIVYPAFYMGLLVAMF 264
>gi|159042209|ref|YP_001541461.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
gi|157921044|gb|ABW02471.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
Length = 590
Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 83/219 (37%), Gaps = 8/219 (3%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEY-----PFQLRVGAVILIGYVGFCAPSVW 167
+ + V + + + L I + + L Y P L + + + P+
Sbjct: 307 VRPYIAVGVSSMVAMVALLIGYNTVFHGDLGYSINVGPVSLDFATYMAVVLIIAYVPAAL 366
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ V + S++RA+ D L +SG + ++ + +A+ LS +
Sbjct: 367 YAERVIAERRSLERAFSDFLRDFTELRKSGFTPEKIISTLADT--RDYGALSRYLKDISK 424
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + +V F NRT+ R L++S YG + ++L L S + +
Sbjct: 425 QIRYGIPIRVVLSEFMNRTRSYYARVFAWLLLESIEYGGATPETLESLASFSSLMIRIND 484
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ A + VP I + L LVI+ ++ +
Sbjct: 485 DLLARLKPLR-FVPYIGAMILTLTLVIMVFTVVGLSSVF 522
Score = 41.3 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 82/240 (34%), Gaps = 15/240 (6%)
Query: 93 LVDENIVNKLRAAGFRS--EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
E + L+ A E + + ++ ++ + +G+ + + + F L V
Sbjct: 21 RRGEQLERVLKNAKVYMLPERFMARVFFATIITAVLSVPIGLYLTYNSIESIMGSFNLTV 80
Query: 151 ---------GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+I++ ++ + + Q + P L + +SG+S+
Sbjct: 81 KSITVLSIGLVMIVLPFIVYVMMMTLPKMQLSDLQYKVDSELPFFAAYLAMISQSGLSVT 140
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ R+A I + + + + A T +N + +
Sbjct: 141 SAIERLAN-IRLLEAIGKIAREIVVKNKAIGMDPLTALTESALSTPSHLFQNLIMGYVTN 199
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R G I L + ++E ++ L + + A L + + V++L+ + L+
Sbjct: 200 VRTGGDILHYLEIRLNEIVNDTLDKIRRGAEFLSTLMESYIGAG---VILLIGLNVLYLA 256
>gi|314964234|gb|EFT08334.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA1]
Length = 196
Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 3/162 (1%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ P I + + + A +DL+ + + S +AL A+ L+
Sbjct: 33 GWFIPDTRIRSRSKAVRQDAAEAVLVYVDLVTLARLANQSAPRALVEAAQM--SDHPVLA 90
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ + + + + + + L D G S+ +LR V E
Sbjct: 91 RIRMTLERSRLEQQSPWAGLDGLSDELDLPELAELVEVLRL-DDQGASLAGALRARVHEM 149
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
R L + + +A + LT+ M+I L + +++I P ++
Sbjct: 150 RDAHLNQEKVEAQTASESLTIWMVIPVLVLGLVLITPPLLIM 191
>gi|119719362|ref|YP_919857.1| type II secretion system protein [Thermofilum pendens Hrk 5]
gi|119524482|gb|ABL77854.1| type II secretion system protein [Thermofilum pendens Hrk 5]
Length = 604
Score = 56.0 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 71/214 (33%), Gaps = 1/214 (0%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ L ++ LV+ +F + +I + L +++ F V+ +
Sbjct: 48 VVFLSIIALVLGFVFDVPIVILLSRMGVGLGGVLATSFSVPLMLAGAVFGLGLVYPKIKL 107
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-F 231
R S P + + GIS + R+A+ + +E + ++
Sbjct: 108 SNRTSRFDLEVPYLSVYITVMATGGISPYTSFERLAKAPKVLFQEIKKEAMYFFLKVKGM 167
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A E+ R + + + R G + L+ ER+ + +
Sbjct: 168 GQDPLSAIEDSAKRVPHNGYKQLMLGYAATLRAGGDVVHYLQRQTEVMLRERVSQMKTIG 227
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+G + M I L + L ++ +++
Sbjct: 228 ERIGALMESYMAIVLLTSMTLYVLYVVNMALAQA 261
Score = 41.7 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 30/207 (14%), Positives = 79/207 (38%), Gaps = 6/207 (2%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
++ + +G + + L ++ VG +I + P++ + + S
Sbjct: 334 ASTVLRSVFSPFVGAVLLLTRLLGLGKGYESGVGMIISLTLG--LLPAMIVETRSTLKFS 391
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I+ L L+ ++G++ ++ + + + ++ + +
Sbjct: 392 GIQYGLTRFLRDLVEVRKTGMAPEKCII---NLKDRDYGKFTPYLRDIAKQVGWGVSLHT 448
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
FE F + + L++S G +L L S + +E EK+AA L P
Sbjct: 449 IFERFSKGMKNWFALISMFLLVESIEVGGGTPQTLEALASYAETLEQVEKEKRAA-LRPL 507
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
+ +P + + ++++I+ + S++
Sbjct: 508 MLMPYVGALIITVVVLILVEFMGSMLK 534
>gi|296141574|ref|YP_003648817.1| type II secretion system F domain protein [Tsukamurella
paurometabola DSM 20162]
gi|296029708|gb|ADG80478.1| Type II secretion system F domain protein [Tsukamurella
paurometabola DSM 20162]
Length = 197
Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 6/140 (4%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A DL +C+ +G+ + L+ + L+ + A+
Sbjct: 57 AYDLFAVCLRAGMPTAD---AARAVASTAAPALAAVLGRAAEMLALGSDPDTAWRT---E 110
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ V T+ L +S R G+S L L R++ A G + P+ +
Sbjct: 111 SDDAQVIALTRMLRRSARAGSSPAVGLADLARTERAQAEDRAVAAGERAGVMVAGPLGLC 170
Query: 306 FLPVLILVIIGPAILSIIDT 325
FLP + + I P ++ + T
Sbjct: 171 FLPAFVCLGIVPVVMGLAGT 190
>gi|291526749|emb|CBK92335.1| Bacterial type II secretion system protein F domain [Eubacterium
rectale M104/1]
Length = 142
Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSV-------PLSEEMLLTIAELSFLPNRQVAFENF 242
+ + + SG++++QA R+ + P EEML+T E+S + A+ F
Sbjct: 1 MAVLMGSGMTVEQAWNRITARYLDERKNNDKNIMPAYEEMLVTEREISDGVTGRKAYAGF 60
Query: 243 YNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R ++ C + + ++QS G+ + + L + ER + A K G K+
Sbjct: 61 AERVKLPCYQKLVRIILQSIHKGSKGVCEMLEKESEDAFDERRLLALKLGEEAGTKML 118
>gi|269217517|ref|ZP_06161371.1| putative integral membrane protein [Actinomyces sp. oral taxon 848
str. F0332]
gi|269212452|gb|EEZ78792.1| putative integral membrane protein [Actinomyces sp. oral taxon 848
str. F0332]
Length = 181
Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 7/178 (3%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ + V F A + + R S DL + + +G S+
Sbjct: 4 FGLSAVLFVVAAAWSSEFFASDARGGDALGARASLPPVDQAMVADLAVAAISAGCSVPAL 63
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
L + + + P E L+ + A+++ +R AL S
Sbjct: 64 LVALDSALAEEEEPPGLEC--VAKSLTMGGTWEEAWQSAPSR-----FDPLRNALEPSWV 116
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
G + L + R+ R+ A + AA LG KL +P+ + FLP IL+ + P ++S
Sbjct: 117 DGAAAVPLLERTAASLRAGRVRRARESAARLGAKLVLPLGLCFLPAFILLGVVPIVVS 174
>gi|20091916|ref|NP_617991.1| hypothetical protein MA3098 [Methanosarcina acetivorans C2A]
gi|19917114|gb|AAM06471.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
C2A]
Length = 453
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 67/172 (38%), Gaps = 4/172 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+++I ++ P + +++ + A+ D L L + GI + + ++
Sbjct: 118 MLIIAFIIATLPYSIDVLMQKRKLRKQEVAFSDFLYKLSELMRGGIDPVKGVIALSR--- 174
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G+ + +E+ + L + + + V ++++ G ++ D +
Sbjct: 175 GELGAIKKEVQDCASFLVLGHSLEYSMNRLNEAIGSKLVAKYINIIVEAAHTGGNVADLV 234
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ R+ +E EK+ + + + V+++ I+ ++L +I
Sbjct: 235 FRTSEDMRAVISLEREKENNLKQYAVVFYLAQGIM-VMLVYILSTSLLPLIQ 285
>gi|281415508|ref|ZP_06247250.1| type II secretion system protein F [Micrococcus luteus NCTC 2665]
Length = 239
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 9/176 (5%)
Query: 151 GAVILIGYVGFCAPSVWISNL-VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V +G + + A W L + LD+L + +G S+ AL +
Sbjct: 69 AVVAAVGLLFWLAGRSWTRLLLRAAAREPAAVGAAVVLDVLAALLSAGRSLPAALDDLGR 128
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ G + + T A L + + A+ L R G +
Sbjct: 129 TLPG-----ARGLRATAALLLWGRDWDEAWAGLDT---DPVWIETAARLRPLHRSGMAGA 180
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+L + R + E+ A L L +P+ + LP + + P +++++
Sbjct: 181 RTLAETAAAVRQQTRRADERAAEELAVCLVMPLGLCLLPAFVCWGVVPVVMALLRA 236
>gi|227502475|ref|ZP_03932524.1| type II secretion system protein F [Corynebacterium accolens ATCC
49725]
gi|227076844|gb|EEI14807.1| type II secretion system protein F [Corynebacterium accolens ATCC
49725]
Length = 207
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+++ A VA + L A L + A+++
Sbjct: 73 IELFAACLSAGLTVHAAATAVARTAEADTQHL---WETVSALLGVGVPTESAWDHMKGHA 129
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ V I S + G +I + + R+E A KA G + +P+ + F
Sbjct: 130 GLEDVAGLV---ILSGQSGATIAAGCTRICTSLRAEASAHATAKAERAGVFIALPLAVCF 186
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 187 LPAFIVLGLAPVVISL 202
>gi|23465096|ref|NP_695699.1| hypothetical protein BL0506 [Bifidobacterium longum NCC2705]
gi|189440157|ref|YP_001955238.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
gi|239622703|ref|ZP_04665734.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|23325710|gb|AAN24335.1| hypothetical membrane protein with unknown function
[Bifidobacterium longum NCC2705]
gi|189428592|gb|ACD98740.1| Flp pilus assembly protein [Bifidobacterium longum DJO10A]
gi|239514700|gb|EEQ54567.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 200
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 19/158 (12%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L +L + + G SI +AL V + +GG M + L+ A+
Sbjct: 45 WTILILRMLQVSLRQGSSIPRALDMVGKAVGGDCGA---RMSEVGSSLARGVPWADAWHA 101
Query: 242 FY--------------NRTQ--MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
RT + AL S +G G L + + +
Sbjct: 102 AMAVQHEGAPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERA 161
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 162 AIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|167006300|ref|YP_001661523.1| integral membrane protein [Streptomyces sp. HK1]
gi|166162382|gb|ABY83503.1| integral membrane protein [Streptomyces sp. HK1]
Length = 304
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 4/182 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ LL + + IL G P V ++ A L+ L
Sbjct: 64 LVITAAVTTLLVWAWTGWPVHGILAGAAVLGLPFVLNPGTAASQRIERLEALAQWLNHLA 123
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++GIS+ Q +R A+ P++ + L + AF +F +
Sbjct: 124 GVHQAGISLPQTIRASAK---AAPGPIAPNVRALADRLRSGMEAEDAFAHFADELADGVA 180
Query: 252 RNATQALI-QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + G + D+L L + + +A + + M+ + ++
Sbjct: 181 DHVVLLFQSHAVYKGPGLSDALEALAVTIHQQAADARDIEADRAKVRKSSRMVSMVICLV 240
Query: 311 IL 312
++
Sbjct: 241 VV 242
>gi|229821271|ref|YP_002882797.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
gi|229567184|gb|ACQ81035.1| type II secretion system protein [Beutenbergia cavernae DSM 12333]
Length = 285
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 17/202 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
++L AG SL + V L + +I G +
Sbjct: 33 WTARAQDELVQAGLHG-VSLRTFVGVCLGLGLIVATAAFAVGSGASIAAAFGLIAAAA-- 89
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
P+V++ ++R+ +++ WPD +D L V +G+++ +AL ++E
Sbjct: 90 ----------PTVYVRGRARRRRVELRQVWPDVVDDLTSAVRAGMTLPEALISLSE---R 136
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSL 272
+ E+ + + + R + L + G +G L
Sbjct: 137 GPQEVRAELHAFAVDYRASGRFVASLDALKERLADPVADRIVETLRIATDVGGSDLGRML 196
Query: 273 RVLVSETRSERLMEAEKKAASL 294
R L R + E +A
Sbjct: 197 RTLSEFLRDDLRTRGELEARQS 218
>gi|307352531|ref|YP_003893582.1| type II secretion system F domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307155764|gb|ADN35144.1| Type II secretion system F domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 600
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 77/234 (32%), Gaps = 9/234 (3%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVV--RLVVPIIFLILGIIWIFGYDKLLEYPF 146
++++L + + L+ A +L + + L+ LI+ + + + P
Sbjct: 7 VESLLDVKKLGRSLKGARLPINPNLYLHFCIILTLLSAFALLIVQLFLLVFGVEFNLIPI 66
Query: 147 QL----RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
++ ++ + F A + S + R++ I P AL + S
Sbjct: 67 LPYSISQLLVFVIAVFAIFAALFYYPSLVAAGRKTRIDIDLPYALTYMEAL--STNVTLY 124
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+L + + +S E + + ++ + A N T + + L
Sbjct: 125 SLFKSVFEAEDLYGEVSHECGMIVRDVEIFGEDLLTAMRNLQKITPSENFADLLNDLALV 184
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
R G ++ + R E E + V + F + L+I+
Sbjct: 185 FRTGGNLKEFFNSRSDSYRELARQELEATLQIMEMIAEVYVTAFVAGPIALIIM 238
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 6/180 (3%)
Query: 113 LNILLVVRLVVPIIFLILG---IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+ V + F + + W + + + I + + P
Sbjct: 330 PFRFYISDYQVGLFFGLAFSMIVAWQYVSGGVAAIFPEFTFEVFICLFVIALVLPVSIAY 389
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ ++ P+ L + + G+++ A+ V+ G LS E+ + E+
Sbjct: 390 ESRKMYTRRVEAQMPEFLRDIADMKDLGMTLQTAIEMVSSSKLGL---LSSELKIASREV 446
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + A R + V+ A ++++ + D L + +S+ M++++
Sbjct: 447 KWGYSVSSALVRMEERIGLVSVKRAISLIVKASEITDQLRDILTIAISDLDHYLKMQSKR 506
>gi|312133502|ref|YP_004000841.1| tadc [Bifidobacterium longum subsp. longum BBMN68]
gi|317483638|ref|ZP_07942614.1| tadC protein [Bifidobacterium sp. 12_1_47BFAA]
gi|311772745|gb|ADQ02233.1| TadC [Bifidobacterium longum subsp. longum BBMN68]
gi|316914916|gb|EFV36362.1| tadC protein [Bifidobacterium sp. 12_1_47BFAA]
Length = 200
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L + + + G SI +AL V + +GG M L+ A+
Sbjct: 45 WTILILRMSQVSLRQGSSIPRALDMVGKAVGGDCGA---RMSEVGRSLTRGVPWADAWHA 101
Query: 242 FY--------------NRTQ--MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
RT + AL S +G G L + + +
Sbjct: 102 AMAVQHEGAPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERA 161
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 162 AIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 199
>gi|146351306|ref|YP_001210533.1| putative typeII /IV secretion system integral membrane protein,
TadC related [Arthrobacter nitroguajacolicus]
gi|146218870|emb|CAL09941.1| putative typeII /IV secretion system integral membrane protein,
TadC related [Arthrobacter nitroguajacolicus]
Length = 294
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 85/303 (28%), Gaps = 19/303 (6%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
I AV+ L + +L ++ + + ++
Sbjct: 4 LALIIGAVAGLGLTLLIFELVPKQPKLSAALERLGTTTVEDVSTSRNINSLLGSWAQRHL 63
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ L+L I ++ K V+ I ++ +
Sbjct: 64 SGITGFGIPARDLSLLNITAQTHLATK-----------------VKAAAAGILALIVLSA 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+F L + A + +G + + + RA +L+
Sbjct: 107 VFWLFGLPPLFPAVPAIAAVPLGLGLAVLVDAGVKQQAVEAREEFSRAVATYFELVAAER 166
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
G AL A + V L A L A + +R+
Sbjct: 167 RRGSPAQHALSEAA-GVADSWVFRRIRQELLRASLQSQMP-WNALRELSEEIGVKELRDL 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ S ++ +SLR RS+ + + ++ ++TVPM + + ++I
Sbjct: 225 ADIMQLSGEEDAAVYESLRARGKSLRSQMVTDEHQEGNKQTERMTVPMTLLGAVFMAILI 284
Query: 315 IGP 317
P
Sbjct: 285 TAP 287
>gi|154151924|ref|YP_001405542.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|154000476|gb|ABS56899.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 610
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 108/316 (34%), Gaps = 5/316 (1%)
Query: 11 ATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASS 70
L + I + ++P + + + + +L + + +++ A +
Sbjct: 242 PIALIIMIVAQGMTSAATMTWLVPFMYLVIPVGAIIMIWMLSLMLPPENLEVTRREMADT 301
Query: 71 RLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLIL 130
L S F + L + ++ + L+ + +
Sbjct: 302 GLSFGISADEYPFQEDQAFLRSLEAKRQERRIYNLLRHPFRTYISNYNYSLIAGVTCAGI 361
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + +P G V LI +GF AP + +++ P+ L L
Sbjct: 362 FALTLASGGMNALFPKNAYEGGVCLIA-IGFMAPVSLAYEGRRWYVINVENNIPEFLREL 420
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++ G+++ A+ R++ + LS E+ + ++S A R +
Sbjct: 421 SDMIDIGLTLPDAIHRISN---AKLGLLSSELAIVSRDVSTGAYVNSALVRMEERIGVIS 477
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
V+ A L+++ +++ D + +++ + +E +A + + + + F + +
Sbjct: 478 VKRAISLLVKASEVTSNLRDIFVIAITDFEHYLKLRSE-RANTAIVYVMIIYLSFGIYLY 536
Query: 311 ILVIIGPAILSIIDTM 326
+ +S +
Sbjct: 537 TAYQLNGPFMSSFSSF 552
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 4/192 (2%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
L P + L + + + + R+S I P A+ + + +
Sbjct: 71 FGLFALIPPLIFWIFLFALCVPGMYLFQVYYPVMIARGRKSKIDLDLPYAVSYM-QALST 129
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRNAT 255
+S + ++R+ E+ +S E + ++ + A N T R+
Sbjct: 130 TMSPFEVVKRIYEE-KAMFNEVSLEFGQVVRDVELFGDDLITALHNLQKTTPSPLFRDFV 188
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL-PVLILVI 314
L G I L + E + ++ V + F P+ ++++
Sbjct: 189 NDLGVVYESGGDITAYLSAKTEFFHEQAKRELDLLLKTIEIMAEVYVSAFVAGPIALIIM 248
Query: 315 IGPAILSIIDTM 326
I ++ TM
Sbjct: 249 IVAQGMTSAATM 260
>gi|320100494|ref|YP_004176086.1| type II secretion system F domain-containing protein
[Desulfurococcus mucosus DSM 2162]
gi|319752846|gb|ADV64604.1| Type II secretion system F domain protein [Desulfurococcus mucosus
DSM 2162]
Length = 580
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 8/232 (3%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + + + + NI + ++ +G + L + + + + + +
Sbjct: 5 DWVYKYFNWIGKRILKMFPNIGDSIKKSGIHMHSEVYAALTGLVFIVSLAASITLTILLA 64
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ V L+ + PS++ R SSI +P L V SG
Sbjct: 65 LLFRSPLGVAITVSIPTLVLLLMVSLPSLY----ASNRASSIDGEFPFLSSYLSTMVMSG 120
Query: 198 ISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
+S A R+ + I ++ L++ +L L + AF+ RT V+
Sbjct: 121 LSPYIAFERILKGSTIFKRTSELAQRFILLNRIL--GRDPLTAFDELAKRTPSSRVKETL 178
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
I + + G + D L +E L+ + A LG L + + L
Sbjct: 179 SGYIATVKAGGDVVDYLNKRSRLLFNEMLVGMKIIADRLGGLLEAYLAMILL 230
Score = 42.5 bits (98), Expect = 0.084, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 8/185 (4%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ +F Y + + LI S+ K I R D L+
Sbjct: 335 LLLLFNIANPPGYMYSSIALSTALIIASLPGLAYYIYSSREYKVTRGITRFLRD----LV 390
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
++G+ ++++ E + + ELS + + + +
Sbjct: 391 EVRKTGLPPERSII---ELSPRDYGVFTPHLRKIAMELSIGIPLRRITDEVMRKIRSWIG 447
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ L S G + L L S +E E+K SL + VP + L +
Sbjct: 448 QVLLFILTDSIEVGGGTVEVLENLAWFAESVEAIEDERK-RSLRTLMIVPYMGGILSAVT 506
Query: 312 LVIIG 316
++ +
Sbjct: 507 VIYMV 511
>gi|256396007|ref|YP_003117571.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256362233|gb|ACU75730.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 297
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/229 (13%), Positives = 70/229 (30%), Gaps = 9/229 (3%)
Query: 88 NLKAILVDENIVNKLRAAGFRS-----EYSLNILLVVRLVVPIIFLIL-GIIWIFGYDKL 141
L + + L AG R+ + + L + +I ++L +
Sbjct: 57 RLGSRAAETLTRAGLPQAGARANLVLLDREVLPFLAQKAGCAVIGVLLPAASFATLTIVG 116
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
L+ P + A ++ V F P + ++ ++ +++ + A LD + G I+
Sbjct: 117 LDLPLTIPALAAGVLAAVLFFVPDLALAAEAEEFRTAGRVAVRTFLDQAATTLAGGAGIE 176
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
QAL A+ G + R + + A +
Sbjct: 177 QALVAAADGHG---PVFRAIRDSITDSRLAREPAWPHLDALGKRLGIRELCELAAACTLA 233
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
G + S+ R + + +L +P + + +
Sbjct: 234 GAEGAKVKSSIAAKARSMREREFAAQTEAVEADSERLAMPGGLLGMSFV 282
>gi|291521740|emb|CBK80033.1| Bacterial type II secretion system protein F domain [Coprococcus
catus GD/7]
Length = 491
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 80/180 (44%), Gaps = 8/180 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ V L + +++R + A+P + +++ + +G+++ ++ R+ +
Sbjct: 313 LFIVFLFLAGCIWYQDNNLKKRLEERNEQLLYAYPGFVHRMILMLGAGMTVRRSWNRLLD 372
Query: 210 DIGGQSV------PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
D L EM T ++ A+ F R ++ + +Q LIQ +
Sbjct: 373 DNERLDSGHLEEDWLYREMKYTRIQMESGVPEIQAYLEFGQRMELQQYKKFSQLLIQYIK 432
Query: 264 YGTSIGDSLRVL-VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G+ +L +E +R A++ + G KL +PM++ + +++L+++ PA LS+
Sbjct: 433 RGSKGMQALMQQEAAEAEKQRRDLAKQLGETAGTKLLMPMMLLLI-IVLLIVMVPAFLSM 491
>gi|312794258|ref|YP_004027181.1| type II secretion system f domain [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181398|gb|ADQ41568.1| Type II secretion system F domain [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 303
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 83/226 (36%), Gaps = 20/226 (8%)
Query: 95 DENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ I +L++A + S + ++ L + +L +I ++ +
Sbjct: 56 YDRIDRQLKSA--EVKISTDDFIMYYLYFAVFCFVLAVIL-------------NQLTYFV 100
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
+I F + + + ++ ++ + + + I ++ ++ L + E Q
Sbjct: 101 VIVTSSFIVIKIVLDYISASKKFKFEQKFGEFTQSVAIMLKGTPNLIAVLFQAKE--DEQ 158
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ-MDCVRNATQALIQSDRYGTSIGDSLR 273
L +E+ ++E+ + A +NF R + V ++I ++ G S+ D
Sbjct: 159 DSRLKKEIETILSEVQSGTTLEQALKNFKERNNFSNVVSTWVDSVIFANLSGASLSDVCM 218
Query: 274 VLVSETRSE--RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ + R KK A L + + I L + ++ P
Sbjct: 219 NAARKINDKLSRARLIRKKTARLKSVMLAIIGIITLTLGFILFFFP 264
>gi|260892677|ref|YP_003238774.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260864818|gb|ACX51924.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 283
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/196 (12%), Positives = 63/196 (32%), Gaps = 6/196 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + AP + R+ ++ ++
Sbjct: 58 SAVAASALLLFGLLALAGDPALGAFLAACVCLAPRLAARAREALRREAVVSGLEGVCGVM 117
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ +G + A+ + PL E+ +AE+ + A ENF +
Sbjct: 118 ATALRAGQDVMSAVEGSVKYAR---PPLKRELEELVAEVKLGRSLGEAVENFARKWPSPE 174
Query: 251 VRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFL 307
R A+ + R G + +L + S R ++ + +A + +++ ++ +
Sbjct: 175 TRLLAYAVTLAQRMGGQAVPKALLSVTSSVRERLELKHQVRAKTTYQRVSAVVVGAVPLW 234
Query: 308 PVLILVIIGPAILSII 323
+ ++ + P L +
Sbjct: 235 CLGVMWFLNPGFLGSL 250
>gi|306835047|ref|ZP_07468092.1| membrane protein [Corynebacterium accolens ATCC 49726]
gi|304569072|gb|EFM44592.1| membrane protein [Corynebacterium accolens ATCC 49726]
Length = 207
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+ +G+++ A VA + L A L + A+++
Sbjct: 73 IELFAACLSAGLTVHAAATAVARTAEADTQHL---WETVSALLGVGVPTESAWDHMKGHA 129
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
++ V I S + G +I + + R+E A KA G + +P+ + F
Sbjct: 130 GLEDVAGLV---ILSGQSGATIAAGCTRICTSLRAEASAHATAKAERAGVFIALPLAVCF 186
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P ++S+
Sbjct: 187 LPAFIVLGLAPVVISL 202
>gi|226363662|ref|YP_002781444.1| hypothetical protein ROP_42520 [Rhodococcus opacus B4]
gi|226242151|dbj|BAH52499.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length = 194
Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A DLL C+ +G+ + A + VA PLSE + L+ + A+E
Sbjct: 54 AFDLLAACLRAGLPVATAAQAVAR---SAPAPLSESLRRAADLLALGADAATAWEAAA-- 108
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + +S G+S+ S+ L ++ R++ A A G ++ P+ +
Sbjct: 109 -SDPATESLARMARRSAASGSSLAGSMTELAADARTQVEHLASASAERAGVLISGPLGLC 167
Query: 306 FLPVLILVIIGPAILSIID 324
FLP I + I P ++ +
Sbjct: 168 FLPAFICLGIIPVVVGLAS 186
>gi|28493667|ref|NP_787828.1| hypothetical protein TWT700 [Tropheryma whipplei str. Twist]
gi|28572860|ref|NP_789640.1| integral membrane protein [Tropheryma whipplei TW08/27]
gi|28410993|emb|CAD67378.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
gi|28476709|gb|AAO44797.1| unknown [Tropheryma whipplei str. Twist]
Length = 310
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A +F + + Q + S G G LR + + EA+K+ L
Sbjct: 219 VRDAMRHFN--LPIVNAKRIDQIISLSFSSGAPAGKLLRAESELAQLQARTEAQKQVQRL 276
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIID 324
KL +P+ + LP +L+ I P ++S+I
Sbjct: 277 AVKLMLPLGLCILPAFMLIGIVPLVISMIS 306
>gi|326771893|ref|ZP_08231178.1| bacterial type II secretion system protein F domain-containing
protein [Actinomyces viscosus C505]
gi|326638026|gb|EGE38927.1| bacterial type II secretion system protein F domain-containing
protein [Actinomyces viscosus C505]
Length = 284
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 4/170 (2%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+LG I + L+ + + P + IS+ + R++ ++ WP+
Sbjct: 51 AMFVLGSIGLGLLIGLVFLGMSRAWPVAVAFTAIFTAIPFLVISSRARNRRTRLREVWPE 110
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+D L+ V +G+S+ +AL + E + + + + + + R
Sbjct: 111 AVDTLVSGVRAGMSLPEALTNLGE---RGPEAVRPQFRAFATDYAASARFDSSLDRLKAR 167
Query: 246 TQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASL 294
+AL + G +G LR L R + E +A
Sbjct: 168 FADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQS 217
>gi|251795114|ref|YP_003009845.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2]
gi|247542740|gb|ACS99758.1| hypothetical protein Pjdr2_1079 [Paenibacillus sp. JDR-2]
Length = 311
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 3/178 (1%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC--VE 195
+ F + +L G V C P + ++ +RQ ++ + A++L C V
Sbjct: 90 AGVAVGGFFFQSIKGTLLFGLVVGCLPYTILRAMLVQRQMQLQMDFLPAIELFYQCYLVT 149
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
G + AL+R E+ P+ LS + + + F
Sbjct: 150 GGRQVRTALQRTVEE-RRLLGPMQSVFEQLYRNLSVRGDDEASLRIFSAALGHVWGDYFV 208
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ + G+ I +SL+ L+ + R R +++ L ++ + FL I +
Sbjct: 209 NIMRVALAEGSPIAESLKELLGDMRKARRANEQERNKLLEIRIANFTPVLFLAFYIGI 266
>gi|255505483|ref|ZP_05346368.3| putative bacterial type II secretion system protein F domain
protein [Bryantella formatexigens DSM 14469]
gi|255267486|gb|EET60691.1| putative bacterial type II secretion system protein F domain
protein [Bryantella formatexigens DSM 14469]
Length = 490
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/191 (19%), Positives = 82/191 (42%), Gaps = 6/191 (3%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+++ +G +L + A + + R+ + +PD L L + +
Sbjct: 300 VIWEEKGTDIAATCLGITVLAAVCVWIARNQERQQAQEHRRRQMLMDYPDLLFKLSMLLN 359
Query: 196 SGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G+++ A ++A + + P EEML + E+ ++ENF R +
Sbjct: 360 AGLTMQNAFFKIALEYRDRETPEVRFAYEEMLTSYYEMQSGVPEARSYENFGRRCGVGSY 419
Query: 252 RNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
L + + G+ + L+ + + ER A K G KL +PM++ L V+
Sbjct: 420 NKLGTMLSANLQKGSQGLAKLLQEEAAFSMEERSQMARKLGEEAGTKLVLPMMLMLL-VV 478
Query: 311 ILVIIGPAILS 321
+++++ PA++S
Sbjct: 479 LVILMAPAVMS 489
>gi|89892802|ref|YP_516289.1| hypothetical protein DSY0056 [Desulfitobacterium hafniense Y51]
gi|89332250|dbj|BAE81845.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 256
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/269 (13%), Positives = 91/269 (33%), Gaps = 18/269 (6%)
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
++ ++ A + ++ + + + N L AAG L + +
Sbjct: 3 SAGKQAKAKPKTTDVLLRNAAVRLARYIRMDEYKKSRMANVLSAAGLSDSPELFTAMAIV 62
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
I IL + + V+ + + + ++ I+
Sbjct: 63 KAAAIALCILPCLIVLPLLAP----------IVLFAAILVYFKEIRKADEALAAKRGKIE 112
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ P + + +++ + L + G + E+ + A++ + + A
Sbjct: 113 QELPRFVATITQELKASRDVLSMLENFKRNAGE---DFAAELDILTADMRS-SSYEAALT 168
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL-- 298
F R + + T+ LI R G G ++L + + L + +A + PK+
Sbjct: 169 RFEARFNSPMLSDITRGLIGVLR-GDDGGMYFQMLAHDMKQLELQRLKAQAMKIPPKIRV 227
Query: 299 -TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ M++ FL + +I+ + S+
Sbjct: 228 FSFAMLMCFLMTYMAIIVYEIVTSLGGMF 256
>gi|163840097|ref|YP_001624502.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
gi|162953573|gb|ABY23088.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
Length = 161
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ +R++ + +P +L+ + V +G S AL RV L++E + +
Sbjct: 1 MKITRREARMLAEFPSLAELMALAVRAGESATGALERVCR---TSQGDLAQEFARILGQT 57
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
A F RT++ + T L + GT +
Sbjct: 58 RSGVPLTEALAAFSRRTKIAPLVRFTDGLTVAVERGTPLAGVF 100
>gi|218675030|ref|ZP_03524699.1| putative tadC pilus assembly protein [Rhizobium etli GR56]
Length = 76
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
QS+ GTS+ +LRV R R++ AE+KA +L K+ +P+ F PV +++++ P
Sbjct: 1 FRQSEELGTSVTQTLRVYSKGMRDLRIVRAEEKANALPVKMLLPLGAFLFPVSLIIVLVP 60
Query: 318 AILSIIDTM 326
++ ++ +
Sbjct: 61 IVIRVVSLL 69
>gi|218679577|ref|ZP_03527474.1| type II secretion system protein [Rhizobium etli CIAT 894]
Length = 51
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E R ER+ EAEKKAA+L PKLTVPMI+FFLPVLI VI+GPA + + D
Sbjct: 1 AQEGRDERMNEAEKKAAALPPKLTVPMILFFLPVLIAVILGPAGIQVSDKF 51
>gi|152967076|ref|YP_001362860.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151361593|gb|ABS04596.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 322
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/316 (15%), Positives = 102/316 (32%), Gaps = 8/316 (2%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKR---MKSVAVEREILRKQQITSLQKDSA 68
T L A+ + L A+V P R + A + + S D
Sbjct: 8 TALLSGGAGALGVALLCGALVRPRPSVSVQVARYDGARRSARRTALSAAEAAASAAPDRG 67
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
L+ + L +L + A + + L + ++ L
Sbjct: 68 LFGLQAAFGRGLALLSDRLEVLAGERGWRLRRTRADLAVLGRRTGEFLATKVVAGLVLLL 127
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ + W+ + P + V +++G GF P + + Q+R+ +R D
Sbjct: 128 LAPVCWLVLRAWGVPLPGGVPVSLALVLGGAGFLVPDLALRGDAQRRRRDFRRVVGVFSD 187
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L+ + + G + +AL A + + L A LS A +
Sbjct: 188 LVAMNLAGGRGLPEALLSSA-SVSDYWALVRIRQALAGARLS-GRTPWQALGELGEELAV 245
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA-ASLGPKLTVPMIIFFL 307
+ + AL + G I SL + R + + E A L +++
Sbjct: 246 AELSDLAGALALAADDGAKIRASLAARAATVRRRDMADVEGDAGEKSQSMLVAQLVLCT- 304
Query: 308 PVLILVIIGPAILSII 323
++ + PA+ +++
Sbjct: 305 -AFMVFLAFPAVHNLM 319
>gi|227494921|ref|ZP_03925237.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
gi|226831373|gb|EEH63756.1| type II secretion system protein [Actinomyces coleocanis DSM 15436]
Length = 291
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 5/191 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ I I L + + + + P W+ +QKRQ AWPD
Sbjct: 61 LFLIVSILIPLLVGSLVFTLTQVIPVAVAVATAVAPLPWGWLRARLQKRQQLFAGAWPDI 120
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D LL V +G+S+ +A+ +++ + E VA + +
Sbjct: 121 VDSLLTAVRAGVSLPEAVVQLSHSGPEIT---RTYFQHFAMEYRSSGKFDVALTSLQSNF 177
Query: 247 QMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + G S +G+ LR L + R + E +A + +
Sbjct: 178 ADKNSKRVFEVIRLGREVGGSEMGNILRDLSAMMRENLRISGEIQARQSWT-VNAARLAV 236
Query: 306 FLPVLILVIIG 316
P ++L++I
Sbjct: 237 AAPWIVLLMIS 247
>gi|88601624|ref|YP_501802.1| type II secretion system protein [Methanospirillum hungatei JF-1]
gi|88187086|gb|ABD40083.1| type II secretion system protein [Methanospirillum hungatei JF-1]
Length = 625
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 10/242 (4%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFR-SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
F+ + A L NI +RAA S+YS +LL+ + + + I+I
Sbjct: 3 FISPRQVDAWLEGTNIRKYIRAAHLPYSQYSYFLLLLKCSIASVSIFAILTIYILSLPDD 62
Query: 142 LEYPFQLR-----VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
++ + + A +L+ + + R+SSI P A+ + + +
Sbjct: 63 VQLIPGMANIYTILIAFVLLVPGVIIGIFTYPQTVATGRKSSIDLDLPYAITYM-QALST 121
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNAT 255
+++ +R++ E + +E L + ++ F + A N T +
Sbjct: 122 TMTLYNVIRKIYEA-DDLFGEVGKEFGLIVRDVEVFGDDLYTAIRNLQKVTPSKNLEEFL 180
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL-PVLILVI 314
L+ G + + L + R E E ++ V + F P+ +++I
Sbjct: 181 NDLLLLSNSGGDVTNFLSSRSAYFRESAARELESILKTIEVMAEVYVTAFVAGPITMIII 240
Query: 315 IG 316
I
Sbjct: 241 IV 242
>gi|308235608|ref|ZP_07666345.1| hypothetical protein GvagA14_05189 [Gardnerella vaginalis ATCC
14018]
gi|311113936|ref|YP_003985157.1| hypothetical protein HMPREF0421_20048 [Gardnerella vaginalis ATCC
14019]
gi|310945430|gb|ADP38134.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019]
Length = 205
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE----NF 242
L ++++ ++SG++I +AL V I G + L A+ F
Sbjct: 62 LQMMIVALKSGVAITRALDAVGSSIPGGKGIW---LRNVSKALLSGDTWIEAWSAPYVCF 118
Query: 243 YNRTQMDCVRNATQALIQ-----SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + ++ S G+S L ++ A+K+++ L +
Sbjct: 119 DKKDKNPSASFVLSMWLRQSLRESWSCGSSPVPVLIAILQNYEQSMRNVAKKESSRLSVR 178
Query: 298 LTVPMIIFFLPVLILVIIGPAILSII 323
L +P+ + FLP I V I P + + +
Sbjct: 179 LLLPVGLCFLPAFIFVGILPTVSAFM 204
>gi|72160530|ref|YP_288187.1| integral membrane protein [Thermobifida fusca YX]
gi|71914262|gb|AAZ54164.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 246
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
VA PL + +L + A+++ + + +AL ++
Sbjct: 125 DMVAAVAQALGGPLGTALDGVARQLRLGADPARAWQSLH---APAELAAVGRALARASHT 181
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G + D + ++ R A + A G + +P+ + FLP +L+ + P ++
Sbjct: 182 GAPLADVVESHAADCRRTARATALELAHRTGVAVVIPLGVCFLPAFVLLGVVPLAAGLVS 241
Query: 325 TM 326
+
Sbjct: 242 GL 243
>gi|320095975|ref|ZP_08027590.1| type II secretion system protein [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977093|gb|EFW08821.1| type II secretion system protein [Actinomyces sp. oral taxon 178
str. F0338]
Length = 286
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 4/173 (2%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ + +G V P+ W+S+ +R + AWP+ +D L+ V +G ++
Sbjct: 70 SFVVTETWAVGLAMGVVAAPLPAAWVSSRSHRRAREAREAWPEVVDSLVSGVRAGAALPT 129
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
L A+ G L + VA + +R +AL +
Sbjct: 130 LL---ADLGSGGPPALRGAFEAFGQDYRAHGRFDVALDRLKDRLADPVADRIVEALRLAR 186
Query: 263 RYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G + L L R + + E +A + + ++L+I
Sbjct: 187 SVGGADLARLLTDLAVLLREDARVRGELEARQSWTVGAARLGVAAPWAVLLLI 239
>gi|315227312|ref|ZP_07869099.1| conserved hypothetical protein [Parascardovia denticolens DSM
10105]
gi|315119762|gb|EFT82895.1| conserved hypothetical protein [Parascardovia denticolens DSM
10105]
Length = 209
Score = 54.4 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L++L++ + +G SI ++L V + P+ + L + A+E R
Sbjct: 66 VLEMLIVSISNGASIPRSLEAVGTVMKN---PVGKAFKEVAEALYRGSSWADAWE-LGRR 121
Query: 246 T-----QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ +AL S R+G S + L + E ++ + + L K+ +
Sbjct: 122 GIGDERGREVFDVVDRALEPSWRHGLSPLNRLETTIEEANRQQNRRLDDAVSKLSVKILL 181
Query: 301 PMIIFFLPVLILVIIGPAILS 321
P+ + FLP I+V + P++
Sbjct: 182 PLGLCFLPAFIVVTVLPSLAG 202
>gi|303238136|ref|ZP_07324672.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
gi|302594182|gb|EFL63894.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
Length = 294
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/273 (10%), Positives = 93/273 (34%), Gaps = 18/273 (6%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ + SL+ + + S + K M + R ++ ++ K +
Sbjct: 1 MVVIAKLISLVAIIYLVSFFIYPVFKPM----SGKRKKRSREFLAVSKKKMKTEKYLYFK 56
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + + E + + + + + + +++ + L++ ++ +
Sbjct: 57 DIVLRRMSNKLFLNEVKREQLNFIISR--LDMKITPEEIRLNQILYSLAGLLVSLVMMRL 114
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
L ++ +G+ P + V+ + +I + +P ++
Sbjct: 115 MPMLG--------YVCLIFIVLGWLYPIDELEKKVEHKNKNILKDFPAFYSMVYYQYSRS 166
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
I+I A + + + + +++EM + + + + A + F R + +
Sbjct: 167 INIYLA-DVIKDFLPNANRDMADEMGVLLDNIEYGEEF--ALKQFKKRVPLRHIIKFCDI 223
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + G + L +E R++ E++
Sbjct: 224 METRLK-GYDNTSQMAYLKNELYDLRVVALEEE 255
>gi|307327613|ref|ZP_07606798.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886725|gb|EFN17726.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 297
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/188 (12%), Positives = 65/188 (34%), Gaps = 4/188 (2%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
PF L + +G + + AP + + ++ A L+ + + +
Sbjct: 114 VVAGTPLPFTLPAVCSLALGVLFWLAPGRDVKRAAAAARLIVRHAAASYLERVALARIAN 173
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
QAL + AE G + + A + + +
Sbjct: 174 SGAAQALTQTAEVGDGWI--FARMRQVFSQAELSGVTPWDALKQLGEELDIPELTRPADT 231
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L + G ++ +L+ + R L +++ +A + + +P+ + +++ ++ P
Sbjct: 232 LALAGD-GAAVYATLQAQARQLRIALLSDSKAEANAASASMVLPVTFGVI-LMLTFVMIP 289
Query: 318 AILSIIDT 325
+I+ +
Sbjct: 290 VTSTILSS 297
>gi|91772318|ref|YP_565010.1| type II secretion system protein [Methanococcoides burtonii DSM
6242]
gi|91711333|gb|ABE51260.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 306
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/212 (13%), Positives = 73/212 (34%), Gaps = 4/212 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ +L+ V ++ F + + + + L + + + +
Sbjct: 64 VIVLIGVPVIEANRFGFPAWTAAYRPYQPILVAVFGGLFFAALCFVSVYSLLKSYPAMVA 123
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-F 231
R+ I++ P A++ + +G+ R ++ + + E + +L
Sbjct: 124 GDRKRKIEQMLPYAINYMSAMSGAGVLPVDLFRALSNN--EIYGEMCVESKYLVRDLEVL 181
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
N A +N + T ++ Q I G + ++ + + + ++
Sbjct: 182 GSNLVSAMKNLASSTPSPMLQEFLQGAITVVTSGGELESYFKIKAEQYIIDNRQKQKEFL 241
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+LG + F L L+I AI+S++
Sbjct: 242 ETLGLLGETYVTAFVAGPLFLIITI-AIVSLM 272
>gi|322370282|ref|ZP_08044841.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
paucihalophilus DX253]
gi|320549990|gb|EFW91645.1| type IV pilus biogenesis complex membrane subunit [Haladaptatus
paucihalophilus DX253]
Length = 680
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 3/192 (1%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIW-IFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
G Y L VV V I + G + K+ F V + GF
Sbjct: 74 GLFLGYLLLRFGVVGTGVWIGMPVSGTVAEALNALKVPALVFGTGVVLGAVGFLAGFGTV 133
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
V + R+ I PDA+ + G++ + L +A+ +S E
Sbjct: 134 LVIPYSRAGARKREINMLLPDAISFMYALSIGGLNQLEILEAMAKA-DDTYGEVSREFQS 192
Query: 225 TIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ E + + + A T D + ++ G ++ L +
Sbjct: 193 VVQETEYFDIDYRNAIRKRALETPSDELSQFFTDMLSIINSGGNMTRFLDDKKDKHMRTA 252
Query: 284 LMEAEKKAASLG 295
E E +L
Sbjct: 253 KQEQELTLETLE 264
>gi|302539258|ref|ZP_07291600.1| integral membrane protein [Streptomyces sp. C]
gi|302448153|gb|EFL19969.1| integral membrane protein [Streptomyces sp. C]
Length = 296
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 6/195 (3%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLL-EYPFQLRVGAVILIGYVGFCAPSVWISN 170
S L R + + L+L + L PF + A + +G + + P +
Sbjct: 86 SPAEHLGKRFLFALYGLVLPQLAGALLSMLGVGLPFVMPAAAGLGLGALFWLWPGQEVKK 145
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ ++ A LD + + + QAL A+ G + E M E
Sbjct: 146 EAAAARLVVRHAAASYLDRVALARIANSGAAQALTDTADVGDGW---IFERMRQAFYEAD 202
Query: 231 F-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A + + + L + G ++ +L+ + R L +A+
Sbjct: 203 LAGVTVWDALKQLGEELDIPELTRPADTLALAGD-GAAVYTTLQAQARQLRVAILADAKA 261
Query: 290 KAASLGPKLTVPMII 304
+A + +P+
Sbjct: 262 QANEASTSMVLPVTF 276
>gi|92113784|ref|YP_573712.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
gi|91796874|gb|ABE59013.1| type II secretion system protein [Chromohalobacter salexigens DSM
3043]
Length = 291
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 7/197 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L I G L + + + ++ + ++ +S ++ P L+
Sbjct: 68 LVISVAIGLGILAVLLVVIDQRWSVFVLAGALLGGNLILGWRARRLRSRLRAQLPGYLEQ 127
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + G S ++A +R I + PL + ++
Sbjct: 128 FLRELAVGASPERAFQRQ---IARSAPPLRNMLERVWVRRELGLELHEGLVRESQLLKLS 184
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ AL + R+G S+ D L V+ R + E KA + + T +++ +PV
Sbjct: 185 ELALLATALEVNQRHGGSLRDILGSFVTLLRQQERGRRELKALTGETRFTA-VVLAVIPV 243
Query: 310 LI---LVIIGPAILSII 323
LI +++ P LS +
Sbjct: 244 LIGGYILLTNPEFLSTM 260
>gi|33601082|ref|NP_888642.1| hypothetical protein BB2099 [Bordetella bronchiseptica RB50]
gi|33575517|emb|CAE32595.1| putative membrane protein [Bordetella bronchiseptica RB50]
Length = 281
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G I ALR++ E PL++E L + E + A R +
Sbjct: 117 MACALRAGAGIAAALRQLVEHGE---APLAQEFGLLLREQRMGVSFDAALARLARRVSFE 173
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ AL + G ++ ++L + + ++ +A ++ I+ LP
Sbjct: 174 SMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQA-WIVGALPP 232
Query: 310 LILVIIG 316
+++ ++G
Sbjct: 233 VLMGVLG 239
>gi|84495076|ref|ZP_00994195.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
gi|84384569|gb|EAQ00449.1| hypothetical protein JNB_09759 [Janibacter sp. HTCC2649]
Length = 204
Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
DAL L + + SG+ +AL VA+ +GG ++ ++ + + + + ++ +
Sbjct: 67 DALVLCALALRSGLGPIEALEAVADHVGGA---VARQLRVVASAHRWGQDAATSWAHVGE 123
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + +++ G + + R E E G L +P+
Sbjct: 124 AWRPAALA-----WQAAEQSGAAPAGVVLAAAERMRREEASRVEAAVQRAGVLLVLPLGA 178
Query: 305 FFLPVLILVIIGPAILSIIDT 325
FLP + + P +L + +
Sbjct: 179 CFLPGFVGTTVVPVVLHLARS 199
>gi|298345275|ref|YP_003717962.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
gi|298235336|gb|ADI66468.1| type II secretion system protein [Mobiluncus curtisii ATCC 43063]
Length = 295
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 4/172 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ + + V L G + P + + + + Q +AW
Sbjct: 59 GLGQFLVLSLLAGVSAGICLTVVTGLVMVGWLAGLLAAYLPFLGLQSKLHSVQGQRGKAW 118
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +D L+ V +G+S+ + L VA L A+ N + +
Sbjct: 119 PNLVDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175
Query: 244 NRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASL 294
+AL + + G + + L L + R+E E A
Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQS 227
>gi|150402959|ref|YP_001330253.1| type II secretion system protein [Methanococcus maripaludis C7]
gi|150033989|gb|ABR66102.1| type II secretion system protein [Methanococcus maripaludis C7]
Length = 298
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 75/203 (36%), Gaps = 7/203 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I L++ I L + + + + P++ + + K + P
Sbjct: 35 IGILLVITILPIFLKIFLGFTLKTTLILTFVYLGSVLSLPTIMYESKMDK----FDQNIP 90
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
AL ++++ ++SG S+ +A+ V G + + + + A N
Sbjct: 91 KALYVMVLSLDSGRSVVEAINEVIRS--GIPEVDVVFSKVVVLMTERKLSFEDAMILVSN 148
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + +I++ +YG + D+L+ L + ++++ + + +I+
Sbjct: 149 SLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLLSVTANGLAVGLIIL 208
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
+ +IG L++I +
Sbjct: 209 CGVIPATAGLIG-GYLTVISQLA 230
>gi|320457131|dbj|BAJ67752.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 151
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 19/153 (12%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY--- 243
+ +L + + G SI +AL V + +G M + L+ A+
Sbjct: 1 MRMLQVSLRQGSSIPRALDMVGKAVGDDCGA---RMSEVGSSLTRGVPWADAWHAAMAVQ 57
Query: 244 -------------NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
T + AL S +G G L + + + E+
Sbjct: 58 HEGAPADSPSGEDTNTTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERN 117
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
AA L KL +P + FLP +LV + PAI S +
Sbjct: 118 AAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 150
>gi|304315797|ref|YP_003850942.1| type II secretion system F domain [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777299|gb|ADL67858.1| Type II secretion system F domain [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 275
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 85/231 (36%), Gaps = 16/231 (6%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
I L+AAG + + ++ + +I+I+ + L + ++ +
Sbjct: 58 RINEMLKAAGNPLKLTAETYIIAH----LGLFSFAVIYIYLTKMVDLQAILLILLSIFGL 113
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
++I ++ + R +R P+ +DL + + + ++ A+ S
Sbjct: 114 --------DLYIQSVRKDRIEKFRREMPEIVDLFELGATADVPLEDIFLITAQSAK--SK 163
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+ + AE ++VA F N + AL+Q DR G D L L
Sbjct: 164 EVRNAITKLAAEYIMTREKEVALRKFANEVSLPEANVLAMALLQGDRTG-RTVDILSTLS 222
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
S + + ++ S+ K+ I F + ++ + I +I +K
Sbjct: 223 SSLFNTAASKVARQDKSMEYKVLSA-IFFLMASIVTLYIYSYFTNIQSGLK 272
>gi|45357601|ref|NP_987158.1| type II secretion system protein [Methanococcus maripaludis S2]
gi|45047161|emb|CAF29594.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 298
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 74/203 (36%), Gaps = 7/203 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I L++ I L + + + + P++ + + K + P
Sbjct: 35 IGILLVITILPILLKIFLGFTLKTTLILTFVYLGSVLSLPTIMYESKMDK----FDKNIP 90
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
AL ++++ ++SG S+ +A+ V G + + + A N
Sbjct: 91 KALYVMVLSLDSGRSVVEAINEVIRS--GIPEVDVVFSKIVTLMTERKLSFEDAMILVSN 148
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + +I++ +YG + D+L+ L + ++++ + + +I+
Sbjct: 149 SLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANGLAVGLIIL 208
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
+ +IG L++I +
Sbjct: 209 CGVIPATAGLIG-GYLTVISQLA 230
>gi|229829729|ref|ZP_04455798.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
14600]
gi|229791718|gb|EEP27832.1| hypothetical protein GCWU000342_01826 [Shuttleworthia satelles DSM
14600]
Length = 231
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 4/187 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ LL + F A++L+ + Q+R R + D L LL+
Sbjct: 1 MLISCALALLLAWLFYSSPLALLLVIPIYLGLGPYLRKRREQRRYGIFLREFQDYLKLLV 60
Query: 192 ICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +G S + A R E++G + PL + A + +
Sbjct: 61 AALRNGYSAENAFRLAEEELGKITPADSPLLTAVQKLSARIRLQMPLEEGLVEMARELGY 120
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ N + + R G L S ++ E+ AA L K ++ +P
Sbjct: 121 EEAVNLADLMAFARRLGGDYSRFLERSARSIASRIELK-EEMAADLAAKEYEQRVMSVMP 179
Query: 309 VLILVII 315
+ +L+ +
Sbjct: 180 LAVLLYV 186
>gi|226325871|ref|ZP_03801389.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758]
gi|225205995|gb|EEG88349.1| hypothetical protein COPCOM_03684 [Coprococcus comes ATCC 27758]
Length = 281
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 10/161 (6%)
Query: 149 RVGAVILIGYVGFCAPSVWI---SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ ++L + I +N + R+ + +P+ + + +G++ +
Sbjct: 97 VIPILMLGMAISILLVGREIQKENNQKKTRKEQMMLDYPEIITEFTMLTGAGMTAKNVWK 156
Query: 206 RVAEDIG------GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
R+AED G G+ EE+ T E+ +E F R + L
Sbjct: 157 RIAEDYGITRGKTGRKREAYEEIWKTWQEMKSGIPEMECYERFARRCDLIPYMKMGALLS 216
Query: 260 QSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
Q+ + G I + LR+ + +R A + G +L
Sbjct: 217 QNLKKGAKGISEMLRMEAVQALEDRKSRARQLGEEAGTRLL 257
>gi|315655695|ref|ZP_07908593.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
gi|315489759|gb|EFU79386.1| type II secretion system protein [Mobiluncus curtisii ATCC 51333]
Length = 295
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 4/172 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ + + V L G + P + + + + Q +AW
Sbjct: 59 GLGQFLVLSLLAGVSAGICLTVVTGLVMVGWLAGLLAAYLPFLGLQSKLHSVQGQRGKAW 118
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +D L+ V +G+S+ + L VA L A+ N + +
Sbjct: 119 PNLVDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175
Query: 244 NRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASL 294
+AL + + G + + L L + R+E E A
Sbjct: 176 RELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQS 227
>gi|303244717|ref|ZP_07331048.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
gi|302484931|gb|EFL47864.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
Length = 295
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 6/194 (3%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
II + L I ++ + V ++L PS+ + ++K +R
Sbjct: 31 YFIIVVFLSFILPIVLKYIMHLSSKSTVILIVLYSLSILSIPSIMYESKIEK----FERN 86
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P AL ++++ +ESG S+ A+ V G + + + + +
Sbjct: 87 LPKALYVMILSLESGRSVIDAINEVINS--GIKEVDVIFLKIVALMTEKKLSFEDSIILV 144
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N R + +I++ ++G + + L+ L + ++ + + + +
Sbjct: 145 SNSIDSKIFRQIGRLIIENRKHGGELAEVLKTLAKTLEDLQNLKNQLLSVTANGLAVGLI 204
Query: 303 IIFFLPVLILVIIG 316
II + IIG
Sbjct: 205 IICGVIPATAGIIG 218
>gi|134046668|ref|YP_001098153.1| type II secretion system protein [Methanococcus maripaludis C5]
gi|132664293|gb|ABO35939.1| type II secretion system protein [Methanococcus maripaludis C5]
Length = 298
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 76/204 (37%), Gaps = 9/204 (4%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I L++ + L + + + + P++ + + K + P
Sbjct: 35 IGILLIITVLPILLKIFLGFTLKTTLILTFVYLGSVLSLPTIMYESKMDK----FDKNIP 90
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNRQVAFENFY 243
AL ++++ ++SG S+ +A+ E I + + + + + A
Sbjct: 91 KALYVMVLSLDSGRSVVEAIN---EVIRSGIPEVDVVFSKVVTLMTERKLSFEDAMILVS 147
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
N R + +I++ +YG + D+L+ L + ++++ + + +I
Sbjct: 148 NSLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANGLAVGLII 207
Query: 304 IFFLPVLILVIIGPAILSIIDTMK 327
+ + +IG L++I +
Sbjct: 208 LCGVIPATAGLIG-GYLTVISQLA 230
>gi|28493157|ref|NP_787318.1| hypothetical protein TWT190 [Tropheryma whipplei str. Twist]
gi|28476197|gb|AAO44287.1| unknown [Tropheryma whipplei str. Twist]
Length = 294
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 18/235 (7%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
K + + ++L A G R+ SL + + ++ ++F + + Y
Sbjct: 31 LAKSKPSRRYGRFDKFHSRLIAVGLRN-VSLGSFVSLTVLFGVVFAAIITLVTGIY---- 85
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ +G P + ++ ++ S WPD ++ ++ V +G+ + +
Sbjct: 86 --------IFCVFGFLIGIATPILIVNYQYRRLVSLDSNIWPDIVENVISAVRAGMGLPE 137
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL ++ V + + E N A N + + +
Sbjct: 138 ALCSLSRF---GPVRIRQIFCNLENEYGATGNFASAVANAKCALADPKADRILETVQLAR 194
Query: 263 RYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G S + LR L R + AE + I P +L I+
Sbjct: 195 SLGGSELIKVLRNLSEYMREDLATRAEIVGRQSWV-VNAARIAVAAPWAVLAIMS 248
>gi|304390832|ref|ZP_07372784.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325715|gb|EFL92961.1| type II secretion system protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 295
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 4/172 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ + + V L G + P + + + Q +AW
Sbjct: 59 GLGQFLVLSLLAGVSAGICLTVVTGLVMVGWLAGLLAAYLPFLGLQGKLHSVQGQRGKAW 118
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +D L+ V +G+S+ + L VA L A+ N + +
Sbjct: 119 PNLVDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175
Query: 244 NRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASL 294
+ +AL + + G + + L L + R+E E A
Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQS 227
>gi|312138012|ref|YP_004005348.1| type ii secretion system integral membrane subunit [Rhodococcus
equi 103S]
gi|311887351|emb|CBH46662.1| putative type II secretion system integral membrane subunit
[Rhodococcus equi 103S]
Length = 199
Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
DLL C+++G+ + VA PL E + T L+ + A++ +
Sbjct: 60 FDLLAACLKAGLPVP---DAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASEP 116
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + +S R G ++ ++ L ++ R+E A G + P+ + F
Sbjct: 117 ATEALARMA---RRSARSGAALSSAMADLATQQRTEAEDRAIAAVEKAGVLIGGPLGLCF 173
Query: 307 LPVLILVIIGPAILSI 322
LP + + I P ++ +
Sbjct: 174 LPAFVCLGIVPVVIGL 189
>gi|256833436|ref|YP_003162163.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
gi|256686967|gb|ACV09860.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
Length = 416
Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL + +G SID AL VA + V ++ + L + Q A+ N R
Sbjct: 281 LDLLTTVMSAGHSIDSALDTVATHVPDLEVA---QLGVVARLLLLGASWQRAWANAPARY 337
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+AL + G+S+ +L ++ +A ++A L + VP+ + +
Sbjct: 338 -----AFLGEALADGWQRGSSVIPTLIATRDAWIAQEQADAHQRAQRLSSMIVVPVGVCY 392
Query: 307 LPVLILVIIGPAILSI 322
LP +LV + P +S+
Sbjct: 393 LPAFVLVGVVPTAVSL 408
>gi|315656391|ref|ZP_07909280.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315492950|gb|EFU82552.1| type II secretion system protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 295
Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 4/172 (2%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ ++ + + V L G + P + + + Q +AW
Sbjct: 59 GLGQFLVLSLLAGVSAGICLTVVTGLVMVGWLAGLLAAYLPFLGLQGKLHSVQGQRGKAW 118
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P+ +D L+ V +G+S+ + L VA L A+ N + +
Sbjct: 119 PNLVDDLVSGVRAGLSLGETLLEVA---ARAPKSLRVPFAHFAADYRAGGNLDASLKILK 175
Query: 244 NRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASL 294
+ +AL + + G + + L L + R+E E A
Sbjct: 176 HELADPVGDRIVEALRLAAQVGGNDLVILLEDLGAMLRAEERTRGEVLARQS 227
>gi|325675225|ref|ZP_08154910.1| bacterial type II secretion system protein F domain protein
[Rhodococcus equi ATCC 33707]
gi|325553931|gb|EGD23608.1| bacterial type II secretion system protein F domain protein
[Rhodococcus equi ATCC 33707]
Length = 198
Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
DLL C+++G+ + VA PL E + T L+ + A++ +
Sbjct: 59 FDLLAACLKAGLPVP---DAVAAVAASAPDPLGESLRRTADRLALGADPATAWDVVASEP 115
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + +S R G ++ ++ L ++ R+E A G + P+ + F
Sbjct: 116 ATEALARMA---RRSARSGAALSSAMADLATQQRTEAEDRAIAAVEKAGVLIGGPLGLCF 172
Query: 307 LPVLILVIIGPAILSI 322
LP + + I P ++ +
Sbjct: 173 LPAFVCLGIVPVVIGL 188
>gi|294787153|ref|ZP_06752406.1| putative bacterial type II secretion system protein F domain
protein [Parascardovia denticolens F0305]
gi|294484509|gb|EFG32144.1| putative bacterial type II secretion system protein F domain
protein [Parascardovia denticolens F0305]
Length = 177
Score = 53.3 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L++L++ + +G SI ++L V + P+ + L + A+E R
Sbjct: 34 VLEMLIVSISNGASIPRSLEAVGTVMKN---PVGKAFKEVAEALYRGSSWADAWE-LGRR 89
Query: 246 T-----QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ +AL S R+G S + L + E ++ + + L K+ +
Sbjct: 90 GIGDERGREVFDVVDRALEPSWRHGLSPLNRLETTIEEANRQQNRRLDDAVSKLSVKILL 149
Query: 301 PMIIFFLPVLILVIIGPAILS 321
P+ + FLP I+V + P++
Sbjct: 150 PLGLCFLPAFIVVTVLPSLAG 170
>gi|255994749|ref|ZP_05427884.1| putative bacterial type II secretion system protein F domain
protein [Eubacterium saphenum ATCC 49989]
gi|255993462|gb|EEU03551.1| putative bacterial type II secretion system protein F domain
protein [Eubacterium saphenum ATCC 49989]
Length = 353
Score = 53.3 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 4/190 (2%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
+++ L + ++L + + + ++ + P ++ ++ +
Sbjct: 165 IAWEQEEGSLAGLILIPLVLALIILAKGKYSKLEKIRKESHQDVLMNLPSFINRYILLIN 224
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTI---AELSFLPNRQVAFENFYNRTQMDCVR 252
+G + A++R +E L+T + + R +
Sbjct: 225 AGAMPEDAMKRASESEKNMFGKGYFSELITDLYDRAEKSKSSLSKELYDAALRLGIWQFI 284
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
T + S G+ + L ER AE + KLT+P+++ L VL++
Sbjct: 285 RVTSIITDSMYTGSDMSHKLTREAKMLWFERKKLAESRGRLAEVKLTMPLLLLLL-VLMI 343
Query: 313 VIIGPAILSI 322
V IGPA + +
Sbjct: 344 VTIGPATMDM 353
>gi|291446569|ref|ZP_06585959.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291349516|gb|EFE76420.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length = 267
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 46/263 (17%), Positives = 85/263 (32%), Gaps = 32/263 (12%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE-YSLNILLVVRLVVPIIFLIL 130
+ + +V +LR++G RS ++ ++++
Sbjct: 21 RKRAVRGRGAQLLGADATPRSGRRGRLVARLRSSGDRSRSEAVRRWSAPGGAWLTGWILV 80
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR-------QSSIKRAW 183
G + Y W + R ++ I
Sbjct: 81 GGLLGCAVGAAAAYGA------------------WRWQRTRPRGRPGHSPSERAVIAGQL 122
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
P A DLL CV G +A V IGG P+ + + T E+ ++ F
Sbjct: 123 PLAADLLAACVAVGAGPREAAEEVGRSIGG---PVGDRLARTAVEIRLGGEPADSWGRFG 179
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + L ++ G D + L + R+ER A +A G +T P+
Sbjct: 180 E---IPGAGPLARCLYRAGSTGAPAADPIARLAASIRAERAAAAVARAQRAGVLITAPVG 236
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ FLP + V + P I+ + +
Sbjct: 237 LCFLPAFLAVGVAPVIIGLAGDL 259
>gi|117928945|ref|YP_873496.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
gi|117649408|gb|ABK53510.1| type II secretion system protein [Acidothermus cellulolyticus 11B]
Length = 286
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
CAP + + ++R++ ++ WPD +D L V +G+++ +A+ ++A+ L
Sbjct: 89 CAPWTLVRHRARRRRAELRAVWPDVVDNLASAVRAGLALPEAVAQLADRGPD---ELRPT 145
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETR 280
+ N + + R ++L + G +G LR L R
Sbjct: 146 FRRFADDYRVSGNFAASLDELKRRLADPTADRIIESLRMAREVGGTDLGRLLRTLSVFLR 205
Query: 281 SERLMEAEKKAA 292
+ + AE +
Sbjct: 206 EDLRIRAELETR 217
>gi|159905296|ref|YP_001548958.1| type II secretion system protein [Methanococcus maripaludis C6]
gi|159886789|gb|ABX01726.1| type II secretion system protein [Methanococcus maripaludis C6]
Length = 298
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 77/203 (37%), Gaps = 7/203 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I L++ I L++ + + + PS+ + + K + P
Sbjct: 35 IGILLVITILPILLRIFLDFTLKTTLILTFVYLGSVLSLPSIMYESKMDK----FDKNIP 90
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
AL ++++ ++SG S+ +A+ V G + + + + + A N
Sbjct: 91 KALYVMVLSLDSGRSVVEAINEVIRS--GILEVDAVFSKVVVLMTERKLSFEDAMILVSN 148
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + +I++ +YG + D+L+ L + ++++ + + +I+
Sbjct: 149 SLDSKIFRQVGRLIIENRKYGGELADTLKKLAKTLEDLQNLKSQLMSVTANGLAVGLIIL 208
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
+ +IG L++I +
Sbjct: 209 CGVIPATAGLIG-GYLTVISQLA 230
>gi|317403494|gb|EFV83999.1| hypothetical protein HMPREF0005_03141 [Achromobacter xylosoxidans
C54]
Length = 303
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/253 (15%), Positives = 75/253 (29%), Gaps = 10/253 (3%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN--KLRAAGFRSEYSLNILLVVRLV 122
+ + S + R S L + +++ + + +GF L + VR
Sbjct: 23 RHANSGQRRAASSAFLEDQLRRSRGAPVSDKMPFAQGSRALRSGFSRWDMLLLQGGVRQS 82
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ I + + ++L+ + + +RQ
Sbjct: 83 PAFYARLALPILAGALLAWTLLGWLSGLVTLVLLAVFAYFL----LWLRADRRQRRRVSQ 138
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P LD ++ V G S+ PL E + A A
Sbjct: 139 LPAFLDNIVRLVTIGNSMA---AAFQTAAASTDEPLREVVETAAALSRSAKELDAALVQV 195
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ M + + + R+G L + + R AE A+S +L+
Sbjct: 196 SRQYDMKELYMVAAVVSVALRFGGRSDQVLERMAAFMRDIGQARAELSASSAEIRLSA-W 254
Query: 303 IIFFLPVLILVII 315
I+ LP+ I I
Sbjct: 255 ILALLPLGIAGFI 267
>gi|88856327|ref|ZP_01130986.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
gi|88814411|gb|EAR24274.1| hypothetical protein A20C1_00265 [marine actinobacterium PHSC20C1]
Length = 288
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 78/233 (33%), Gaps = 18/233 (7%)
Query: 85 KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEY 144
++ + +L AG + + ++ + + +
Sbjct: 27 ERRVRGRSAWSLRLRERLVQAGLPTTSPSIV-------------LIVSVVFSVAVAAVTF 73
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ V+ + P++ IS + R+++ + WPD +D L+ V SG+++ +L
Sbjct: 74 VLTSVIVVVLCSAALALVLPTLAISWRARARRTATQIVWPDVVDQLVSAVRSGLALPDSL 133
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+++ + A N +A + + L S
Sbjct: 134 MTLSQ---TGPLVTRSAFAAFAARYRATGNFSIAVDELKVALADPVADRILETLRMSREV 190
Query: 265 GTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G S + + LR L R E + +E +A + + P ++L ++
Sbjct: 191 GGSELTNVLRSLSVYLRQEAAIRSEIEARQSWVMNAARLGLAA-PWVVLFLLT 242
>gi|297619917|ref|YP_003708022.1| Type II secretion system F domain-containing protein [Methanococcus
voltae A3]
gi|297378894|gb|ADI37049.1| Type II secretion system F domain protein [Methanococcus voltae A3]
Length = 294
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/203 (11%), Positives = 75/203 (36%), Gaps = 7/203 (3%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+I ++L + L + + + + + PS+ N + K ++ P
Sbjct: 31 LIAILLTSFIPLIFKIFLNFTIKSTLILTFMYLFSLMVIPSILYENKIDK----FEKNLP 86
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
AL ++++ + SG S+ +++ + + + + + + N
Sbjct: 87 KALYIMVLSLNSGRSVIESINEIINS--DIKEVNIAFSKIILLMSERKLSFEDSVLIVSN 144
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + +I++ +YG ++ +SL L ++ + + + +I+
Sbjct: 145 SLDSKLFKQLGRLIIENRKYGGNLAESLNTLAKTLEDLTNLKNQLLSVASNGLSVGIIIL 204
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
+ ++G + L++I +
Sbjct: 205 CIMIPATAGLVG-SFLNLISAIS 226
>gi|227549691|ref|ZP_03979740.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
44291]
gi|227078187|gb|EEI16150.1| conserved hypothetical protein [Corynebacterium lipophiloflavum DSM
44291]
Length = 122
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
PL+++ A + A+ +F+ + + S GT++
Sbjct: 3 YGPDSPEPLAQQWRTVAALSALGVEPDKAWADFHR---VPGGAELASLVGLSHSSGTAVA 59
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ S R +A +A G +++P+ FFLP ++ + P +S+ +
Sbjct: 60 AGCERIASRLRDAAADDATARAERAGVLISIPLTAFFLPAFFVLGLIPTAISLGTHLTQ 118
>gi|260892669|ref|YP_003238766.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
KC4]
gi|260864810|gb|ACX51916.1| Flp pilus assembly protein TadB-like protein [Ammonifex degensii
KC4]
Length = 285
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 8/202 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + L Y +V +L GF A + + R + ++ +P AL
Sbjct: 52 FLVLTLVSAAGVALAAYGVTGQVHLALLSAPGGFFAATALVRRRAAARLALLRHQYPMAL 111
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR---QVAFENFYN 244
L ++ G S QAL +V + P+ + + + + + A
Sbjct: 112 AALASAMQGGCSFYQALEQVTPTLR---PPMRDVFADVLRRVRTSTSPRAYEEAVLEVAK 168
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ + ++ R G ++ + L LV A + ++T +
Sbjct: 169 AAGFPDLNSLAMSVGLYQRTGGNLVEVLDHLVKCLYERESDRRYVAAVTAEARVTAAFLS 228
Query: 305 FFLPVLILVI--IGPAILSIID 324
L+ V + P + +
Sbjct: 229 ALPFALMGVFRAVNPEFMRPVF 250
>gi|332534352|ref|ZP_08410193.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036171|gb|EGI72645.1| Flp pilus assembly protein TadB [Pseudoalteromonas haloplanktis
ANT/505]
Length = 291
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 65/160 (40%), Gaps = 4/160 (2%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
+I V F + + +L + + + + + ++ + C+ +G+S+ Q+++ E
Sbjct: 90 AFIISIVVFVTCFITVIDLAHYKLAKFEHHFLEFIETVQSCLSTGLSLQQSMQFADEH-- 147
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
+ ++ L + +S + + +F R + VR ++I + + D L
Sbjct: 148 -ADPYIKKQSSLLLQRMSMGSDAETSFAPLIERYNCETVRLFAHSIITHTQSQCDLTDML 206
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ + + L + KA G K + FLP ++
Sbjct: 207 KSVCNMMSLRTLDRQQLKAKLSGTK-YAAVFSGFLPYALI 245
>gi|326204895|ref|ZP_08194748.1| hypothetical protein Cpap_0154 [Clostridium papyrosolvens DSM 2782]
gi|325984944|gb|EGD45787.1| hypothetical protein Cpap_0154 [Clostridium papyrosolvens DSM 2782]
Length = 290
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/316 (12%), Positives = 107/316 (33%), Gaps = 29/316 (9%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ + + ++F++ + + K K++ + +K +S++
Sbjct: 1 MTILLILFAALFAMGLFFIFAYVLKLPTVKAAKAMLN-----------TERKSKRASQII 49
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
S + K+ + + L+AA + + ++ +L I
Sbjct: 50 EIYLVSWAVKLSKIIHMDKYRKSRMSSILKAADISMTPEVYTAYAIVKAGAVLTGVLPCI 109
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
IF A I++ + + S ++ ++ I+ P +
Sbjct: 110 LIFPMLSP----------AFIIVAVLMYFKESKRADERLRVKREQIESELPRFAATIAQS 159
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
++S + L ++ G E+ + A++ + A F R + +
Sbjct: 160 LKSSRDVLTMLENYKKNAG---AAFRRELDIVTADMRS-SGYESALTRFEARMNSSRLSD 215
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVL 310
+ LI R G ++L + ++ L + +A + PK+ + M++ F+
Sbjct: 216 VVRGLIGVLR-GDDGAVYFQMLEHDFKAFELQRLKGEAQKIPPKIRIFSFIMLMCFMLTY 274
Query: 311 ILVIIGPAILSIIDTM 326
+++I + S+
Sbjct: 275 LVIIAYEILKSLGGMF 290
>gi|329946364|ref|ZP_08293931.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328527340|gb|EGF54338.1| bacterial type II secretion system protein F domain protein
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 283
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 4/169 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+LG I + L+ + + P + IS+ + R++ ++ WP+A
Sbjct: 51 MFVLGSIGLGLLIGLVFLGMSRAWPVAVSFTAIFTAIPFLVISSRARNRRTRLREVWPEA 110
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ +AL + E + + ++ + + + R
Sbjct: 111 VDTLVSGVRAGMSLPEALTNLGE---RGPEVVRPQFRAFASDYAATARFDSSLDRLKARF 167
Query: 247 QMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASL 294
+AL + G +G LR L R + E +A
Sbjct: 168 ADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQS 216
>gi|225022297|ref|ZP_03711489.1| hypothetical protein CORMATOL_02336 [Corynebacterium matruchotii
ATCC 33806]
gi|224944894|gb|EEG26103.1| hypothetical protein CORMATOL_02336 [Corynebacterium matruchotii
ATCC 33806]
Length = 96
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A+ + S G + + + + R + A +A
Sbjct: 1 GVDADRAWRELAQA---PGLGELAALARSSHHSGAGLSNGCSRIAARLRDDGADHATAEA 57
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + +PM + +LP L+ + P ++S+
Sbjct: 58 ERAGVLIALPMTLCYLPAFFLLGLAPMVISL 88
>gi|330465240|ref|YP_004402983.1| type II secretion system F domain-containing protein
[Verrucosispora maris AB-18-032]
gi|328808211|gb|AEB42383.1| Type II secretion system F domain-containing protein
[Verrucosispora maris AB-18-032]
Length = 252
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 80/194 (41%), Gaps = 7/194 (3%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L +L + V A++ + + + + +R + A +
Sbjct: 62 LAAALSGVAVAVLVEGWPGVVAALVTAVLLDRQLRRIELPAVRNRRLRAAADLPLAADLM 121
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ +G +++++ VA+ +GG PL++++ L Q A+ + +
Sbjct: 122 -AAALRAGAPVERSVIAVADALGG---PLADQLRRVGRTLQLGGLPQEAWAHLAE---VP 174
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ A ++S G ++ +L L + R++R+ E A G + +P+ + FLP
Sbjct: 175 GGQRIATAAVRSASSGAALAGALVRLADDLRADRVTTIEAAARRSGVLIVLPLGLCFLPA 234
Query: 310 LILVIIGPAILSII 323
IL + P I++++
Sbjct: 235 FILAGLVPVIVAVL 248
>gi|228982433|ref|ZP_04142692.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
gi|228776616|gb|EEM24924.1| hypothetical protein bthur0002_55660 [Bacillus thuringiensis Bt407]
Length = 274
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 99/266 (37%), Gaps = 19/266 (7%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK-AILVDENIVNKLRAAGF 107
+ ++ L++ Q + ++ + + R K R +K + K + + + L+ +
Sbjct: 10 STHKKRLKQLQFNNKEELTNDEQTRAFIDKVTRPVLKYVVPKMKVRDSQELEKDLKLTKW 69
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
++ + + + + + II ++ I+ I + V ++ F
Sbjct: 70 DKYFNASQYIAMNITLKIIGVVALIVLI-----------PVSVPFALIWFSAFFFLFGFL 118
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+N V + + + +PD + + + + IS +A+ +G PL +E ++
Sbjct: 119 FNNSVTEAKEKLLGGFPDFIRITRGYLTADISFTKAVEGSIPYVGDAWRPLLQEFIVNCD 178
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A + ++ + V+ + + G + +S + + R +L
Sbjct: 179 I----HSVEKAIDKLKDQVDVFAVKELLSLVRLNLEQGVDVRESFERQIDKVREMQLEAI 234
Query: 288 EKKAAS---LGPKLTVPMIIFFLPVL 310
+ A L L P+++ +
Sbjct: 235 MNRIAKRQLLAMVLQGPLLLTLIGAF 260
>gi|51891529|ref|YP_074220.1| putative sercretion system protein [Symbiobacterium thermophilum
IAM 14863]
gi|51855218|dbj|BAD39376.1| putative sercretion system protein [Symbiobacterium thermophilum
IAM 14863]
Length = 299
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/292 (10%), Positives = 75/292 (25%), Gaps = 48/292 (16%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
+ A+ T +++ + + L +R+ E
Sbjct: 1 MQFLAALCTFLAVALFLGGLAGALRRRSRLAERLLRERDPLEQEGT-------------- 46
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
+ + E + + + AG
Sbjct: 47 ---------------VLPRGPGWLERLEREAKQAGLNLSRRH----------------FL 75
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + +G P + I + + R + P+ L L+
Sbjct: 76 LAFGASGGLAALLALAGDLLGAGACLLLGLIGPLLLIRHRARVRAARFAEQLPETLMLMA 135
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G ++ QA++ V + P+ E + A +R +
Sbjct: 136 SVIRAGGTLYQAVQTVVQQ---APQPMRGEFERVARAMQLQVPAGDALGLIRDRVGLGEF 192
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ A + G + L + E +R +AA K + ++
Sbjct: 193 TSVVVACKVAGEAGGDLDRVLESISRELVEDRQFLRAMEAACAEGKASARLV 244
>gi|86739493|ref|YP_479893.1| type II secretion system protein [Frankia sp. CcI3]
gi|86566355|gb|ABD10164.1| type II secretion system protein [Frankia sp. CcI3]
Length = 296
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 64/223 (28%), Gaps = 23/223 (10%)
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ + + L AG R ++ + + L+ F V
Sbjct: 31 ARWERSTSDLLAQAGIRGVTPRQ-------------FVMISLGLGLLVGLVVLAFTETVS 77
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
P + R+ ++ WPD +D L V +G+S+ + L A
Sbjct: 78 LAGAFVVFASLLPRALVVRRRHARRHDLRELWPDVVDNLSSAVRAGMSLPEGL---AAVG 134
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGD 270
V L + S + + + ++L + G +G
Sbjct: 135 VRGPVQLRPAFTRFGEDYSATGSFSACLDRLADELADPVADRIIESLRMAREVGGTDLGR 194
Query: 271 SLRVLVSETRSERLMEAEKKAASLGP------KLTVPMIIFFL 307
LR L + R + AE + L P I+ L
Sbjct: 195 LLRTLSTFLREDARTRAELETRQSWTVNAARLALAAPWIVLLL 237
>gi|302559338|ref|ZP_07311680.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302476956|gb|EFL40049.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 368
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 12/193 (6%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK------RQSSIKRAWPDAL 187
+ + + + + + R P A
Sbjct: 169 LPYAGVVCAGWVLVGGLAGMAAGPVAAAGLRWWRLRRGAAAPPAGVPDPAVAARQLPLAA 228
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
DLL C+ +G A + V E +GG P+ E + AE+ A+
Sbjct: 229 DLLSACIAAGAGPVLAAQAVGETLGG---PVGEALARGAAEVRLGGEPAAAWHRLA---S 282
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ + L ++D G + + L +E R+E A +A ++ P+ + FL
Sbjct: 283 VPGAAALARLLERADVSGLPLAAPVGRLAAEARAEWTRAATARARRAAVMVSAPVGLCFL 342
Query: 308 PVLILVIIGPAIL 320
P I V + P ++
Sbjct: 343 PAFITVGVVPVVI 355
>gi|326777721|ref|ZP_08236986.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|326658054|gb|EGE42900.1| Type II secretion system F domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 280
Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/256 (16%), Positives = 78/256 (30%), Gaps = 18/256 (7%)
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRS-EYSLNILLVVRLVVPIIFLIL 130
+ + +V RA+G S ++++
Sbjct: 34 RERAVRGRGALLLGTVIAARPGWGSRLVAPFRASGASGLPESARRWAAPVGSWLAGWILV 93
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
G + Y + G ++ I P A DLL
Sbjct: 94 GGAMGCAVGSIAAYGMWRWRRTRPRVRPGG-----------AHPERAVIAGQLPLAADLL 142
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
C+ G +A AE P+ + + T AE+ A+ F +
Sbjct: 143 AACIAVGAGPREA---AAEVGDSIGGPVGDRLARTAAEIRLGGEPAEAWGRFGE---IPG 196
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L ++ G + + L + R+ER A +A G +T P+ + FLP
Sbjct: 197 AGPLARCLHRAGSTGAPAAEPVARLAASIRAERAAAAVARAQRAGVLITAPVGLCFLPAF 256
Query: 311 ILVIIGPAILSIIDTM 326
+ V + P I+ + +
Sbjct: 257 LAVGVAPVIIGLAGDL 272
>gi|256826296|ref|YP_003150256.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
gi|256689689|gb|ACV07491.1| Flp pilus assembly protein TadC [Kytococcus sedentarius DSM 20547]
Length = 211
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
LDL+ + ++SG ++ AL VA+++ PL+ + +A + A++
Sbjct: 72 LAAVLDLMALALDSGCAVTDALELVADEV---PEPLAGHLRQVVAARRWGVTGADAWKGL 128
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ QAL + G +++R ++ R +R E+ AA L L +P+
Sbjct: 129 PSQWGP-----VAQALTLAQLAGAPPAETIRRAAADLRRDRRAALERAAARLPVFLVIPL 183
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKDH 329
F+P +L+ + P ++++ H
Sbjct: 184 GTVFMPAFVLIAVVPLVVALATQTLGH 210
>gi|28572730|ref|NP_789510.1| hypothetical protein TW582 [Tropheryma whipplei TW08/27]
gi|28410863|emb|CAD67248.1| putative membrane protein [Tropheryma whipplei TW08/27]
Length = 294
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 18/235 (7%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
K + + ++L A G R+ SL + + ++ ++F + + Y
Sbjct: 31 LAKSKPSRRYSRFDKFHSRLIAVGLRN-VSLGSFVSLTVLFGVVFAAIITLVTGIY---- 85
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ +G P + ++ ++ S WPD ++ ++ V G+ + +
Sbjct: 86 --------IFCVFGFLIGIATPILIVNYQYRRLVSLDSNIWPDIVENVISAVRVGMGLPE 137
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
AL ++ V + + E N A N + + +
Sbjct: 138 ALCSLSRF---GPVRIRQIFCNLENEYGATGNFASAVANAKCALADPKADRILETVQLAR 194
Query: 263 RYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G S + LR L R + AE + I P +L I+
Sbjct: 195 SLGGSELIKVLRNLSEYMREDLATRAEIVGRQSWV-VNAARIAVAAPWAVLAIMS 248
>gi|167044731|gb|ABZ09401.1| putative bacterial type II secretion system protein F domain
protein [uncultured marine microorganism
HF4000_APKG7N23]
Length = 191
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 3/145 (2%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ R +S+ + A+ + + +ESG+ + +A++ +A LS A+
Sbjct: 1 MKSRLASVDQELLYAIRAIEVLLESGVGVAEAMKHIA---DEDYGDLSVIFRQIFADTDS 57
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
N A T +R +LI S T++ D LR + ER ME +
Sbjct: 58 GRNFSDAMRTQMRSTDSAGLRKVLSSLIMSMEEDTNVIDRLRSIAEREAKERRMELDGFI 117
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIG 316
L + + L LI+VI
Sbjct: 118 EGLAGTAEFFIALSILLPLIVVIAA 142
>gi|300790607|ref|YP_003770898.1| hypothetical protein AMED_8803 [Amycolatopsis mediterranei U32]
gi|299800121|gb|ADJ50496.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length = 238
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 6/196 (3%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ G + V A + G+ A + K LDLL
Sbjct: 46 AAAVGGVSTAVLVGGVAGVVAGTIATATGWWAIRRTRRPRPPAMDIAAKLRLAGTLDLLA 105
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
C+ +G+ + AL VA + L+ A+ +
Sbjct: 106 ACLRAGLPVPSALEAVAGSAPAAASTALSSTAGL---LALGSPPHEAW---APVQAAPGL 159
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
A I++ R G + + L R E EAE++A G L +P+ + FLP
Sbjct: 160 GELAAAAIRTSRSGAAFAAAAGDLAGRFRDELATEAEERAERAGVALALPVGLCFLPAFF 219
Query: 312 LVIIGPAILSIIDTMK 327
+ + P +L + +
Sbjct: 220 CLGVLPVVLGLAGRLG 235
>gi|284173203|ref|ZP_06387172.1| hypothetical protein Ssol98_00900 [Sulfolobus solfataricus 98/2]
gi|261601170|gb|ACX90773.1| Type II secretion system F domain protein [Sulfolobus solfataricus
98/2]
Length = 658
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 4/194 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-CAPSVWISNLVQKRQSSIKRAW 183
+ + ++ ++ + L + +++ + F P + ++ + I+
Sbjct: 148 VAYFLVSLLVVIPVSLALSIALLSPLPFLLIFFPLTFIFYPEQKYKSRAREIRDDIQDEI 207
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENF 242
P + L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 208 PFFVTLITIINASGTTIYEGMRKILQF--PIFKAMKKEALLIIRDIEFFGKSPLDALEHR 265
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
T R G I L E + + + +
Sbjct: 266 SRLTLNRDYSWFLAGYSSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIV 325
Query: 303 IIFFLPVLILVIIG 316
I+F + + L+ +
Sbjct: 326 ILFLIFPMFLIALA 339
>gi|297170478|gb|ADI21508.1| type II secretory pathway, component PulF [uncultured
verrucomicrobium HF0070_15G23]
Length = 414
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + + L +++G+ + AL + G PL + + ++
Sbjct: 64 RRSAVKKPKLQDLANYTRQLANLLKAGMPLTSALHSMTSMESGGVHPLVS--VSLLGDVK 121
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
N A ++ ++++ G S+ + L L ER E +K
Sbjct: 122 EGKNLSRAMKSHAEVFPA-----MYINMVRAGESGGSLVEVLERLADHY--ERFAEVRQK 174
Query: 291 AASLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTM 326
S + + F L + + I P + I + M
Sbjct: 175 VISALVYPAFVIGLGFILIFVFMSYILPKFMKIFEGM 211
>gi|15899402|ref|NP_344007.1| hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
gi|13816000|gb|AAK42797.1| Hypothetical protein SSO2679 [Sulfolobus solfataricus P2]
Length = 662
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 67/194 (34%), Gaps = 4/194 (2%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-CAPSVWISNLVQKRQSSIKRAW 183
+ + ++ ++ + L + +++ + F P + ++ + I+
Sbjct: 152 VAYFLVSLLVVIPVSLALSIALLSPLPFLLIFFPLTFIFYPEQKYKSRAREIRDDIQDEI 211
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENF 242
P + L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 212 PFFVTLITIINASGTTIYEGMRKILQF--PIFKAMKKEALLIIRDIEFFGKSPLDALEHR 269
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
T R G I L E + + + +
Sbjct: 270 SRLTLNRDYSWFLAGYSSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIV 329
Query: 303 IIFFLPVLILVIIG 316
I+F + + L+ +
Sbjct: 330 ILFLIFPMFLIALA 343
>gi|167747673|ref|ZP_02419800.1| hypothetical protein ANACAC_02394 [Anaerostipes caccae DSM 14662]
gi|239625016|ref|ZP_04668047.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|167653035|gb|EDR97164.1| hypothetical protein ANACAC_02394 [Anaerostipes caccae DSM 14662]
gi|239521402|gb|EEQ61268.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 291
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/249 (13%), Positives = 88/249 (35%), Gaps = 18/249 (7%)
Query: 81 RNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDK 140
+ + + N L+A G + + ++ I+ +++F
Sbjct: 58 AMRLSHVIRMDEYRKSRMKNVLKATGINMTPEVYQAYALTKAGLLMAGIIPCLFLFPLLT 117
Query: 141 LLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISI 200
++ + + + +++ ++ SI+ P + L +++ +
Sbjct: 118 P----------VIVFLAVMVYFKEIQRADEMLKTKRKSIEDELPRFVANLEQELQNNRDV 167
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
L V EE+ + +A++ + + A F R + + + LI
Sbjct: 168 ---LSMVENFRKNAGAEFGEELGVLVADMRS-SSYEAALTRFEARLNSPMLSDVVRGLIG 223
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGP 317
R G + ++L + + L + + +A + PK+ + M++ FL + +I+
Sbjct: 224 VLR-GDNSVVYFQMLAHDFKQLELQKLKSEAQKIPPKIRVFSFLMLMCFLLTYLAIIVFE 282
Query: 318 AILSIIDTM 326
I S+
Sbjct: 283 IIKSLGGMF 291
>gi|256372253|ref|YP_003110077.1| hypothetical protein Afer_1481 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008837|gb|ACU54404.1| hypothetical protein Afer_1481 [Acidimicrobium ferrooxidans DSM
10331]
Length = 306
Score = 51.7 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/313 (13%), Positives = 100/313 (31%), Gaps = 27/313 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L ++I + +L+ V L +R+ R T +A R
Sbjct: 8 LGISILAGLFAIALVAGVRG--LIGYRRSRRLTRWHDHPSRTRSGSATVRFVMNALERRT 65
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + + L G ++ + ++ + L++ ++ + +
Sbjct: 66 TSEL--------------------LQVDLHLLGMDTDEFASFVMRMSLMLLLLIVATLGV 105
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+F + + +I+ G ++ + + ++ L L +
Sbjct: 106 LVFIKLMSMNLALIGGIVGIIIAFPGGLVFAETYLRSQAKAARAESALLIAPILSYLRLA 165
Query: 194 VESGI-SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G +++ A+ G + P L + ++ Q+ +
Sbjct: 166 LTAGAGTMESAMSEYFRVYGTYANPRGRVWLNDWMTGLAKRTLAEVWSDWGRTYQVGIMV 225
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETR----SERLMEAEKKAASLGPKLTVPMIIFFLP 308
AL Q+ R G + LR L+ +T + + L M++F
Sbjct: 226 TLGSALAQAQRTGAPLVPVLRSLIDQTWRQTTDLVDQTLRSRQNTASLLLLPYMVVFVGT 285
Query: 309 VLILVIIGPAILS 321
V++ + +G A LS
Sbjct: 286 VIVGLFLGNAGLS 298
>gi|311105394|ref|YP_003978247.1| type II secretion system protein F domain-containing protein 1
[Achromobacter xylosoxidans A8]
gi|310760083|gb|ADP15532.1| bacterial type II secretion system protein F domain protein 1
[Achromobacter xylosoxidans A8]
Length = 281
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 3/153 (1%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++ + P ++ L ++R ++ P AL +L + +G ++ LR V E
Sbjct: 78 LVSVMAAALASRLPRALVNALRRRRARRFEQQLPMALLMLAAALRAGAALTTGLRHVVEQ 137
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G PL++E L + E A EN NR D A+ + + G ++ +
Sbjct: 138 SG---APLAQEFGLMLREQRMGVPWDSALENLRNRMPADSTALVVAAMRIAAQTGGNLAE 194
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+L + R+ ++A+ A + +L ++
Sbjct: 195 ALESIAQTLRARLQLQAKLLALTSQGRLQAWIV 227
>gi|227875851|ref|ZP_03993977.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
gi|306819132|ref|ZP_07452846.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307700039|ref|ZP_07637088.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
gi|227843599|gb|EEJ53782.1| type II secretion system protein [Mobiluncus mulieris ATCC 35243]
gi|304648108|gb|EFM45419.1| type II secretion system protein [Mobiluncus mulieris ATCC 35239]
gi|307614800|gb|EFN94020.1| type II secretion system F domain protein [Mobiluncus mulieris
FB024-16]
Length = 305
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 5/189 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L L +L G + P + ++ K Q++ +AWP +
Sbjct: 73 FLLISAGCALGCSLALMIVVKLGVVAVLGGLLAAFTPYLSLNVKRSKIQNARGKAWPHVV 132
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L+ V +G+S+ + L +VA + L + + N + N
Sbjct: 133 DNLISGVRAGMSLGETLTKVATSV---PPSLQAPFAHFVLDYHARGNLDGSLAMLKNELA 189
Query: 248 MDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+AL + + G + + L L S R+E AE A +T +
Sbjct: 190 DPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEILARQSWT-VTGARLAAV 248
Query: 307 LPVLILVII 315
P LIL ++
Sbjct: 249 APWLILAML 257
>gi|253576052|ref|ZP_04853385.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844627|gb|EES72642.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 285
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/184 (20%), Positives = 71/184 (38%), Gaps = 7/184 (3%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ A+ L V F A I+ ++RQ I R P + ++I +E+G S ++
Sbjct: 107 LPVLFLAIPLAVAVFFFAQLGEITKAYKRRQEEITRDLPQLISKMMIALETGKSFLTTIQ 166
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
R+ E G + + + A + + A + F T + +R+ A+ G
Sbjct: 167 RLEETSG---PRMKKMLARLNANIRIMK-LTDAVDLFAAETDVPVMRDFAAAVKIGVNSG 222
Query: 266 -TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ + R RL ++ S K+ + I+ L VII A + I
Sbjct: 223 YGEAKKYFDSIKGDLRKLRLAALKEVTRSQPEKIKMLYILVALHAFAAVII--AFIDIFS 280
Query: 325 TMKD 328
+++
Sbjct: 281 QIQN 284
>gi|325066926|ref|ZP_08125599.1| type II secretion system protein [Actinomyces oris K20]
Length = 283
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 5/191 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+LG + + L+ + + P + IS+ + R++ ++ WP+A
Sbjct: 51 MFVLGSLGLGLLIGLVFLGMSRAWPVALAFSAIFTAIPFLIISSRARNRRTRLREVWPEA 110
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ V +G+S+ +AL + E + + + + + + R
Sbjct: 111 VDTLVSGVRAGMSLPEALTNLGE---RGPEAVRPQFRAFATDYAASARFDSSLDRLKTRF 167
Query: 247 QMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+AL + G +G LR L R + E +A + +
Sbjct: 168 ADPVADRIVEALRLAHEVGGTDLGTLLRSLSQMLREDMRTRGELEARQSWT-VNGAKVAV 226
Query: 306 FLPVLILVIIG 316
P L+L ++
Sbjct: 227 AAPWLVLALLA 237
>gi|297171607|gb|ADI22603.1| type II secretory pathway, component PulF [uncultured
verrucomicrobium HF0500_16O23]
Length = 417
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 10/161 (6%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ ++R+ + + L +++G+ + AL + +A
Sbjct: 64 VRRFGRRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSDGIP--KSVCAQLLA 121
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ V+ F + ++++ S+ + L+ L ER E
Sbjct: 122 DVREGRTLSVSMGKFPEIFP-----DMYLNMVKAGESSGSMVEVLKRLADHY--ERFAEV 174
Query: 288 EKKAASLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTMK 327
+K S M + F L + + I P ++I MK
Sbjct: 175 RQKIISALVYPVFVMGLGFLLIFVFMSYILPKFMTIFKGMK 215
>gi|111021318|ref|YP_704290.1| hypothetical protein RHA1_ro04342 [Rhodococcus jostii RHA1]
gi|110820848|gb|ABG96132.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 196
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
DLL C+ +G+ + A + V+ PLSE + LS + +
Sbjct: 57 FDLLAACLRAGLPVATAAQAVSR---TAPAPLSESLRRAADLLSLGADAA---TAWEAAA 110
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + +S G+S+ S+ L ++ R + A A G ++ P+ + F
Sbjct: 111 SDPATESLARMARRSAASGSSLAGSMTELAADGRIQVEHLAAAAAERAGVLISGPLGLCF 170
Query: 307 LPVLILVIIGPAILSIID 324
LP I + I P ++ +
Sbjct: 171 LPAFICLGIIPVVVGLAS 188
>gi|328954941|ref|YP_004372274.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
gi|328455265|gb|AEB06459.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
Length = 320
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/272 (13%), Positives = 78/272 (28%), Gaps = 4/272 (1%)
Query: 45 MKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ ++ ++ ++ S + L L + + + +
Sbjct: 12 LSALCTASILMPHAASSARPVSSRFDLRASLGRMRLHLADAATRLGSRVPAGLLEREPLR 71
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
A R L + +I + ++ A
Sbjct: 72 ACAREAARLLRPAGSVGSTSVRADAGALILVCAAGSAGTAVVSGSALGALIGLVGTPAAL 131
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
S+ + + R + A P+A L I + SG S+ Q +R V P+ E L
Sbjct: 132 SMRAAGRQRARARKLASAMPEAFGALAIALGSGHSLAQGMRFVGSH---AEEPVRTEFLR 188
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + A + R + AL S R G + D L
Sbjct: 189 ASFSIVCGMSATSALDELLARLPAPGLDLVALALKVSQRTGAPLKDLLAEASEMVGDRIE 248
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + + +++ M+ +PV + I+
Sbjct: 249 LVRRLEVKTAQARMSARMVA-LMPVAMTCILA 279
>gi|296132333|ref|YP_003639580.1| hypothetical protein TherJR_0812 [Thermincola sp. JR]
gi|296030911|gb|ADG81679.1| hypothetical protein TherJR_0812 [Thermincola potens JR]
Length = 290
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 90/248 (36%), Gaps = 22/248 (8%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ ++LNL + ++ + AG+ + L + L I L+L +I+
Sbjct: 24 RKKSTVRRQLNLVHYFGYSQVSDQAKDAGWNI--TTKEFLAIVLFAIGIGLVLALIF--- 78
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
++ G+ P + ++ + ++ A PD +L+ +
Sbjct: 79 ----------KNPLIIVAGVVAGYYLPRFIVQRYKKRERMALMVAIPDFARILIARLVDH 128
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
SI +A +D L++E + ++ Q+A EN + T+
Sbjct: 129 HSIVKAFEMTQKDCFEPMKTLAQEF---VKDVGVGIGVQLALENLKVKVSYRKFNTFTET 185
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L+ + + G S ++L + S +A + + + V+I + P
Sbjct: 186 LLLAHQEGYS-TEALAAMKKAVESIESDIKAIEALQITTRKKKRELFS---VVIASWLFP 241
Query: 318 AILSIIDT 325
+LS ++T
Sbjct: 242 VVLSFMNT 249
>gi|208702094|ref|YP_002267400.1| hypothetical protein BCH308197_A0145 [Bacillus cereus H3081.97]
gi|208657949|gb|ACI30319.1| membrane protein, putative [Bacillus cereus H3081.97]
Length = 310
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + ++ + F G ++ GF
Sbjct: 53 GIRMYLPQSVIQEAQKYEWKLMKSMYWVYTILSGMSIAAIFYFSFGRDPFTLISALCGFL 112
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + ++ + + + ++ + + L +V + + EE+
Sbjct: 113 VPRFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 169
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF+ F + + L S G + L + +
Sbjct: 170 EKVSLLLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 229
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 230 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|314922440|gb|EFS86271.1| type II secretion system F domain protein [Propionibacterium acnes
HL001PA1]
gi|314965661|gb|EFT09760.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA2]
gi|314982825|gb|EFT26917.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA3]
gi|315091476|gb|EFT63452.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA4]
gi|315094230|gb|EFT66206.1| type II secretion system F domain protein [Propionibacterium acnes
HL060PA1]
gi|315104882|gb|EFT76858.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA2]
gi|327329209|gb|EGE70969.1| putative bacterial type II secretion system protein F domain
protein [Propionibacterium acnes HL103PA1]
Length = 147
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
P+AL +L +E+G+ + A+ VAE + G P +E++ + L+
Sbjct: 3 QHRAAQLPEALLMLSSAMEAGLPLRSAVTTVAESLEG---PCAEDLRRLASSLAAGVPDS 59
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A+ + ++ R+ Q + ++ G I + L ++ + +AEKKA G
Sbjct: 60 RAWNDLA---SVEVWRDPAQDVSRAVNSGEGISELLSAHAAQLQVAAAEKAEKKARKAGV 116
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSI 322
P++ LP +LV + P I +
Sbjct: 117 DAIGPLVCCHLPAFLLVGVVPIIAGM 142
>gi|295395524|ref|ZP_06805718.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
gi|294971543|gb|EFG47424.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
49030]
Length = 217
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDL+ IC+ +G+ I +A A +S + L+ + AF +
Sbjct: 80 LDLVAICLRAGLPIPRAFELAARATQDRSG-----LGRLGRSLALG-SVDNAFAGVQD-- 131
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ R + S G ++ L L S+ R + AA LG L +P+ +
Sbjct: 132 PVGEHRTVVSLVEFSRSTGVALAPLLSGLASDMRRAERRRRQMAAAKLGVHLVIPLGVCV 191
Query: 307 LPVLILVIIGPAILSIIDTMK 327
LP +IL + P +++++ M
Sbjct: 192 LPSVILTGVVPVVITLVGDMS 212
>gi|291442507|ref|ZP_06581897.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291345402|gb|EFE72358.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 285
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 4/166 (2%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ +L+G P + V + A + L + G+ ++
Sbjct: 35 GVWLASGNFVGGVLLGAAVIGVPWLITPAQVAAGRIGQLEALSEWTQRLAGLLRLGMGLE 94
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
QA+ + G L+E++ L + A F + T ALI S
Sbjct: 95 QAMITSRK---GAPDALAEQITGLSDRLRLGWRPEEALRAFADELDDVTADKVTAALILS 151
Query: 262 D-RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
G + +L L R E + +A P+ TV + F
Sbjct: 152 VNDRGPGLAQALEDLAGTVREEVAKKRGIEADRAKPRTTVRWMTFI 197
>gi|145591089|ref|YP_001153091.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
13514]
gi|145282857|gb|ABP50439.1| type II secretion system protein [Pyrobaculum arsenaticum DSM
13514]
Length = 261
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 78/202 (38%), Gaps = 3/202 (1%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
R V +I + L G L + V + G + F A ++ +LV R
Sbjct: 15 FSYRRYVTAVIAVPLAAGASAGVVGWLLFGLAGGVALGAIGGLLSFAALLLYPVHLVSAR 74
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPN 234
+S + L +LL + +G+ + +A+ R+AE + ++ E+ L E+ +
Sbjct: 75 RSHFENNLVYTLGVLLPLLAAGVPLGRAVTRLAEVEDDRY--IARELALAAREMIVMGSS 132
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ A + R R + L +S + + L + + ++A+ S+
Sbjct: 133 PEEALSHSAERVPSVTYRETVEMLTRSAKLTQRVDAVLLARLDWLLRAKQIKAQSLVRSM 192
Query: 295 GPKLTVPMIIFFLPVLILVIIG 316
+ +++ L ++ I+
Sbjct: 193 SLMFEIFVVVTILLPTLVYIVA 214
>gi|302668534|ref|YP_003832982.1| hypothetical protein bpr_IV035 [Butyrivibrio proteoclasticus B316]
gi|302397498|gb|ADL36400.1| hypothetical protein bpr_IV035 [Butyrivibrio proteoclasticus B316]
Length = 665
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 53/186 (28%), Gaps = 18/186 (9%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ IL G+ P + + ++ + ++ ++LI + + +
Sbjct: 487 FLLINILGYLAGYYLPYLILQYKLRIVKMDMEDEVIQYQTIVLILMHVDGMLVDTVLDWL 546
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E + ++ + A + N+ R L+ +
Sbjct: 547 ERFS-----FCFRQSIQECIINLEYSTSKALQKMKNQETFPPFRRFVDNLLMVEEE---- 597
Query: 269 GDSLRVLVSETRSERLMEAEKK-------AASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
D L + ++K V I L LI+ +I P L
Sbjct: 598 -DILTAFSEIETDREYYKEKRKTDNEIISTQKAEVGKIVAFIPLIL-TLIIYMIVPFALY 655
Query: 322 IIDTMK 327
++ MK
Sbjct: 656 SMEMMK 661
>gi|304405119|ref|ZP_07386779.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
gi|304345998|gb|EFM11832.1| conserved hypothetical protein [Paenibacillus curdlanolyticus YK9]
Length = 311
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 3/226 (1%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + E L+ G + ++L +R+ + +L I + L
Sbjct: 42 QKQGLLEQADAALKQWGKLYRHLSDLLESLRVPLVPTSFMLLSILLAAAGMLAGALLFQS 101
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC--VESGISIDQALRRV 207
+ +++G V P V + +RQ + + A++L C V I AL+R
Sbjct: 102 MKGTLMLGAVAGLTPYVVFRTALLQRQLQTRIDFLPAVELFYQCYLVTGERQIRHALQRT 161
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
E+ P+ LS + + + F L + G
Sbjct: 162 VEE-RRLPAPMQAVFEQLYRNLSVKGDDEASLRVFAAALGHVWGNYFANILRVALSEGNP 220
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
I DSLR L+++ R R ++++ L ++ I FL + I +
Sbjct: 221 ISDSLRELLTDMRRARRANEQERSKLLEIRIANFTPILFLFLFIGI 266
>gi|269977486|ref|ZP_06184458.1| type II secretion system protein [Mobiluncus mulieris 28-1]
gi|269934402|gb|EEZ90964.1| type II secretion system protein [Mobiluncus mulieris 28-1]
Length = 305
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 5/189 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L L +L G + P + ++ K Q++ +AWP +
Sbjct: 73 FLLISAGCALGCSLALMIVVKLGVVAVLGGLLAALTPYLSLNVKRSKIQNARGKAWPHVV 132
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D L+ V +G+S+ + L +VA + L + + N + N
Sbjct: 133 DNLISGVRAGMSLGETLTKVATSV---PPSLQAPFAHFVLDYHARGNLDGSLAMLKNELA 189
Query: 248 MDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+AL + + G + + L L S R+E AE A +T +
Sbjct: 190 DPVADRIIEALRLAAQVGGNDLVALLEDLGSMIRAEERTRAEILARQSWT-VTGARLAAV 248
Query: 307 LPVLILVII 315
P LIL ++
Sbjct: 249 APWLILAML 257
>gi|302387445|ref|YP_003823267.1| hypothetical protein Closa_3111 [Clostridium saccharolyticum WM1]
gi|302198073|gb|ADL05644.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 289
Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/311 (14%), Positives = 111/311 (35%), Gaps = 25/311 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ +F + A + + L S A K + + + + ++R
Sbjct: 1 MGLLFLFGVTLAAGLFFILLDLLRLPYLSTA-------KAMLNTTRSEKKAARGLEAYLM 53
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ + +L + N L+A G E + + I+ L + +IF
Sbjct: 54 TWAVKLARLIRMDEYRRHQLKNVLKATGMNMEPEVYQAYALVKSGVILLLAIPAGFIF-- 111
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L V V+ +G + + + + +++S+++ P + + +++
Sbjct: 112 --------PLLVPVVVFLGVMVYFKETKKADEKLSAKRASVEKELPRFVANIEQELKASR 163
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ + ++ G + E+ + A++ + + A F R + + + L
Sbjct: 164 DVLAIIENYKKNAGEA---FASELTMLAADMRS-SSYEAALTRFEARLNSPMLSDVVRGL 219
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVII 315
I R G ++L + + L + + +A + PK+ + M++ FL + +I
Sbjct: 220 IGVLR-GDDSTVYFQMLAHDFKQLELQKLKGEAQKIPPKIRVFSFLMLMCFLFTYLAIIA 278
Query: 316 GPAILSIIDTM 326
I S+
Sbjct: 279 YEIIKSLGGMF 289
>gi|332797852|ref|YP_004459352.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
gi|332695587|gb|AEE95054.1| archaeal flagella assembly protein [Acidianus hospitalis W1]
Length = 612
Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/235 (11%), Positives = 75/235 (31%), Gaps = 17/235 (7%)
Query: 95 DENIVNKLRAAGF---RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
++ KL AG ++ I + L + +++G L + +
Sbjct: 37 AKSYEQKLLMAGSSEDPQLFTAKIFFYLLLSSVLSVVLIGFGLFVIIKFYLVFRLAKYLA 96
Query: 152 AVILIGYVGFCAP-------SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
++ G P +S ++ R+ + + I + SG++
Sbjct: 97 LSFMMIIFGLIIPPVTYLANIATLSQKIESRRIGVDAELSAFTSVFAIFLRSGLTPRLMF 156
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
R++ ++ L + + + A + + +++ A + + R
Sbjct: 157 DRLSSS--SAFHYINSITLYVSKRIRYLGESVEDAMLHASQISPSKLLKDFFLAYVTAVR 214
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF----FLPVLILVI 314
G + +++ + + + A A L +I + L++V+
Sbjct: 215 TGAPVINTIEAKAKDILDQLQLRASLAADRLSGIAESYVIWLSSGYIMFFLMMVL 269
Score = 41.3 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 27/209 (12%), Positives = 74/209 (35%), Gaps = 3/209 (1%)
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
I L + ++V + L+L + + IG + P I K
Sbjct: 322 IFLAIGMIVMFVLLVLEKQIFYFLTLSGGTDNIAPTVIAMTIGLLIASVPPAIILTKELK 381
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+ + + + +G+ + ++ + + + + + A ++
Sbjct: 382 EGTGYDPYVVGFMRAIAEGLRAGLPPETIIKNIKDS--KEMGKFGKILNEIYAYITLGYP 439
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ AF R + + +L G+ +++ + + S+ ++ + + +
Sbjct: 440 LKDAFRKGAERIMDFTSKISLVSLADMMEIGSMTPETVESIARQIESQIKIKRD-YESKV 498
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSII 323
L P + L ++ V++G AILS++
Sbjct: 499 KILLVTPYMGVILSLIASVLLGSAILSLL 527
>gi|150399784|ref|YP_001323551.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150399789|ref|YP_001323556.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150399794|ref|YP_001323561.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150399799|ref|YP_001323566.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012487|gb|ABR54939.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012492|gb|ABR54944.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012497|gb|ABR54949.1| type II secretion system protein [Methanococcus vannielii SB]
gi|150012502|gb|ABR54954.1| type II secretion system protein [Methanococcus vannielii SB]
Length = 351
Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 72/194 (37%), Gaps = 10/194 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ ++++V IF ++ + + ++I + G P + ++
Sbjct: 116 ERVYFLKIIVFSIFAVILLFLYGVITSDPISGITNGIIFALIILFGGIFYPKLKLTLF-- 173
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ IK ++ L+ + SG S+ +A++ +A + + S E I +++
Sbjct: 174 --RGEIKIQVLMSILHLISMLNSGASVQEAIKNIANN--PEYGLTSYEFRSIIKDINQGG 229
Query: 234 -NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N A E R+++ ++ LI + G + L L +E R ++ ++
Sbjct: 230 YNFVEALERAKVRSKIPLLKKLYDQLILAANKGGT-QLLLENLYNEI--VRESLSKIDSS 286
Query: 293 SLGPKLTVPMIIFF 306
+I
Sbjct: 287 KFQISNLGNLIFGI 300
>gi|332799372|ref|YP_004460871.1| Type II secretion system F domain-containing protein
[Tepidanaerobacter sp. Re1]
gi|332697107|gb|AEE91564.1| Type II secretion system F domain protein [Tepidanaerobacter sp.
Re1]
Length = 402
Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 55/147 (37%), Gaps = 16/147 (10%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +++G++I ++L +A+ ++ L E + + + A +N
Sbjct: 67 LSVFCRQLAVMLDAGVNILESLTSIAK--QTENKRLREIIFNLNLHIRRGDSLAEACKNQ 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
LI++ ++ D L++L + + K++ + P
Sbjct: 125 PY-----VFSEIFICLIEAGELSGNLSDILKMLSAYYSDMAKQNEKIKSS-----MVYPS 174
Query: 303 IIFFLPVLILVIIG----PAILSIIDT 325
I+ + + ++V + P +I +
Sbjct: 175 ILSIISLFVVVFLTTKVLPVYANIFSS 201
>gi|239943093|ref|ZP_04695030.1| hypothetical protein SrosN15_19021 [Streptomyces roseosporus NRRL
15998]
gi|239989551|ref|ZP_04710215.1| hypothetical protein SrosN1_19781 [Streptomyces roseosporus NRRL
11379]
Length = 151
Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV G +A V IGG P+ + + T E+ ++ F +
Sbjct: 16 CVAVGAGPREAAEEVGRSIGG---PVGDRLARTAVEIRLGGEPADSWGRFGE---IPGAG 69
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ L ++ G D + L + R+ER A +A G +T P+ + FLP +
Sbjct: 70 PLARCLYRAGSTGAPAADPIARLAASIRAERAAAAVARAQRAGVLITAPVGLCFLPAFLA 129
Query: 313 VIIGPAILSIIDTM 326
V + P I+ + +
Sbjct: 130 VGVAPVIIGLAGDL 143
>gi|152967077|ref|YP_001362861.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151361594|gb|ABS04597.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 291
Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 4/183 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + +L V A I IG + C + N + R + + + L
Sbjct: 57 VLLGVGAGVLTLVLTRWVVAGIGIGLLVACWQRLLGGNAEENRGIARLEGLANWTESLRD 116
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ I ++QA+ A + L + L + L A F +
Sbjct: 117 TIAGAIGLEQAIPATA---ATSAPVLRPSLNLLVDRLRVREPLPDALLRFADDVDDPSAD 173
Query: 253 NATQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
AL+ + R G + D L L + TR E + +A+ + +V +++ + ++
Sbjct: 174 VVVAALVLNARLRGPGLRDVLTALAASTREELDVRRRIEASRRSIRRSVQIVLLIVLGVM 233
Query: 312 LVI 314
V+
Sbjct: 234 GVL 236
>gi|227545623|ref|ZP_03975672.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227213739|gb|EEI81578.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 149
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ- 247
+L + + G SI +AL V + +GG M + L+ A+
Sbjct: 1 MLQVSLRQGSSIPRALDMVGKAVGGDCGA---RMSEVGSSLARGVPWADAWHAAMAVQHE 57
Query: 248 ---------------MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ AL S +G G L + + + E+ AA
Sbjct: 58 GAPADSSSGKRTSRTQRDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAA 117
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L KL +P + FLP +LV + PAI S +
Sbjct: 118 KLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 148
>gi|330835388|ref|YP_004410116.1| type II secretion system protein [Metallosphaera cuprina Ar-4]
gi|329567527|gb|AEB95632.1| type II secretion system protein [Metallosphaera cuprina Ar-4]
Length = 615
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/244 (13%), Positives = 84/244 (34%), Gaps = 19/244 (7%)
Query: 95 DENIVNKLRAAGF---RSEYSLNILLVVRLVVPIIFLILGI-------IWIFGYDKLLEY 144
+++ KL AG ++ I + + L+ +++
Sbjct: 37 SKSVEKKLLMAGLSIDPRIFAAQIFFYLSISSAFSALLAFFGIYIIVKLYLVYRLAKFAV 96
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + ++I V + +V IS ++ R+ + + I ++SG+S
Sbjct: 97 LGLMLLMFAVIIPPVTYLLLNVNISQTIENRRIGLDAESAAFSAVFTIFLKSGLSPRILF 156
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
R+++ +++ L + + + A + + + + + + R
Sbjct: 157 ERLSKTTAFNY--INQLTLYVSKRIDFLGESVEDALLRAIKVSPSRILNDFLLSYVSAVR 214
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI------IFFLPVLILVIIGP 317
G + D++ + + + A+ A L +I I F +L+L + P
Sbjct: 215 SGAPVLDTVSAKAKDILRQLELAADIAADKLSGVGETYVIWLASGYITFFLILLLEALFP 274
Query: 318 AILS 321
I+
Sbjct: 275 GIVG 278
>gi|327441712|dbj|BAK18077.1| type II secretory pathway, component PulF [Solibacillus silvestris
StLB046]
Length = 391
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 53/146 (36%), Gaps = 8/146 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + + +G+S+ +A +A+ S PL + + ++ A +
Sbjct: 52 QDFVIYCRQFATLIRAGVSLVEATNILAK--QSTSKPLKKALEKVEEDVRAGIPFSDAVQ 109
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+++S +I D+L L + + + ++ P + +
Sbjct: 110 KHPKVFP-----ELFVNMMRSGEATGNIDDTLDRLANSYEKSFRLIKKVQSTLTYPAMLL 164
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
+I+ + +L+ I P + ++M
Sbjct: 165 ILIVVVV-FFMLIFIVPTFVESFESM 189
>gi|291546645|emb|CBL19753.1| Bacterial type II secretion system protein F domain [Ruminococcus
sp. SR1/5]
Length = 151
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVA----EDIGGQSVPLSEEMLLTIAELSFLPN 234
+ +P + + V++G++ +A +++A + G+ EE+ + E+ +
Sbjct: 1 MLMDYPGLIMKFTLLVQAGLTARKAFQKIALDYGKREDGKKREAYEEIRVACYEMDSGIS 60
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAAS 293
A+ F R + + LIQ+ + G+ + D L E ER +A +
Sbjct: 61 EAEAYRRFGERCGQVKYKTLSTLLIQNLQKGSRYLADLLEKESVEAWEERKRKARVLGDT 120
Query: 294 LGPK 297
K
Sbjct: 121 AATK 124
>gi|229194287|ref|ZP_04321126.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876]
gi|228589186|gb|EEK47166.1| hypothetical protein bcere0002_58710 [Bacillus cereus ATCC 10876]
Length = 292
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 70/213 (32%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + ++ F + + ++ GF P + ++
Sbjct: 59 MYWVYTILSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFLLYQRKKRYYL 109
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 110 IVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 166
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S GT+ L + + ++L A +++
Sbjct: 167 AFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQA 226
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P++I+++ A + +M
Sbjct: 227 QRAFVQNCLIVIAMPIVIVLMSKEAYGFLAGSM 259
>gi|302387179|ref|YP_003823001.1| hypothetical protein Closa_2837 [Clostridium saccharolyticum WM1]
gi|302197807|gb|ADL05378.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
Length = 290
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 98/302 (32%), Gaps = 25/302 (8%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+T + +F ++ A + + S L+ + S + + +
Sbjct: 1 MTIVMFLFIILVASGLFFIASDVLK------LPRLATGKAMLSASSSRKERVKGMEAMVN 54
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
+ + N LRAAG + + + I+ + +
Sbjct: 55 GWAVKLAPYV-PMDEYKKNRMKNTLRAAGIHKTPEEYMAFAIVKAGLVALGIVPCLLVLP 113
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + + + + +++ I+ P + + +++
Sbjct: 114 LLAPVLLFLAVLI----------YFKEAKRADEKLSAKRAKIESELPRFVATITQELKAS 163
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
+ L ++ G + E+ + A++ + + A F R + + T+
Sbjct: 164 RDVLGMLENYKKNAGE---EFAVELDILTADMRS-SSYEAALTRFEARINSPMLSDLTRG 219
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVI 314
LI R G ++L + + L + +A + PK+ + M++ FL I VI
Sbjct: 220 LIGVLR-GDDGAMYFQMLAHDMKQLELQRLKAQAMKIPPKIRVFSFIMLMCFLLTYIAVI 278
Query: 315 IG 316
+
Sbjct: 279 VF 280
>gi|196048264|ref|ZP_03115441.1| membrane protein, putative [Bacillus cereus 03BB108]
gi|196021001|gb|EDX59731.1| membrane protein, putative [Bacillus cereus 03BB108]
Length = 310
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + ++ + F G ++ GF
Sbjct: 53 GIRMYLPQSVIQEAQKYEWKLTKSMYWVYTILSGMSIAAIFYFSFGRDPFTLISALCGFL 112
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + ++ + + + ++ + + L +V + + EE+
Sbjct: 113 VPRFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 169
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF+ F + + L S G + L + +
Sbjct: 170 EKVSLLLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 229
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 230 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|190015191|ref|YP_001966619.1| conserved hypothetical protein [Bacillus cereus]
gi|190015456|ref|YP_001966945.1| hypothetical protein pPER272_0074 [Bacillus cereus]
gi|190015631|ref|YP_001967247.1| hypothetical protein BcAH187_pCER270_0104 [Bacillus cereus]
gi|217956757|ref|YP_002335851.1| hypothetical protein BCAH187_C0115 [Bacillus cereus AH187]
gi|218848445|ref|YP_002454971.1| hypothetical protein BCAH820_B0087 [Bacillus cereus AH820]
gi|116584538|gb|ABK00655.1| putative membrane protein [Bacillus cereus]
gi|116584867|gb|ABK00982.1| conserved hypothetical protein [Bacillus cereus]
gi|116585137|gb|ABK01246.1| conserved hypothetical protein [Bacillus cereus]
gi|217068585|gb|ACJ82833.1| putative membrane protein [Bacillus cereus AH187]
gi|218540496|gb|ACK92892.1| membrane protein, putative [Bacillus cereus AH820]
Length = 310
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + ++ + F G ++ GF
Sbjct: 53 GIRMYLPQSVIQEAQKYEWKLTKSMYWVYTILSGMSIAAIFYFSFGRDPFTLISALCGFL 112
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + ++ + + + ++ + + L +V + + EE+
Sbjct: 113 VPRFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 169
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF+ F + + L S G + L + +
Sbjct: 170 EKVSLLLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 229
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 230 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|257069699|ref|YP_003155954.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
gi|256560517|gb|ACU86364.1| Flp pilus assembly protein TadB [Brachybacterium faecium DSM 4810]
Length = 361
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 7/137 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L+L+ ++SG+ + +A+ V + + + + + L R
Sbjct: 221 LELIAGALDSGLPLARAVAAVGAALP--PGDEATALQRSASALEAGVP-----AALAGRA 273
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ++ + ++ G + LR + R R + E AA L +L +P +
Sbjct: 274 LPAELSALARSAVLAEGTGADLARVLRSAARDLRRGRARDVEVLAAQLAVRLVLPTGLAL 333
Query: 307 LPVLILVIIGPAILSII 323
LP + + I P ++S++
Sbjct: 334 LPAFVALGIIPTVMSLL 350
>gi|227496761|ref|ZP_03927034.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
gi|226833728|gb|EEH66111.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
Length = 185
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 34/98 (34%)
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
L Q A+ + +N L G S L + RS R
Sbjct: 81 VARGLLLGAGWQEAWRAAQDEDWRARRQNLEACLRPGWEDGASPVPLLAATAASLRSGRQ 140
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ A L +L VP+ + LP I + I P + S+
Sbjct: 141 ARDQEAAERLAVRLVVPLGLCHLPAFIALGIVPVVASL 178
>gi|256811145|ref|YP_003128514.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
gi|256794345|gb|ACV25014.1| Type II secretion system F domain protein [Methanocaldococcus
fervens AG86]
Length = 558
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 12/226 (5%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R L+ ++ +I I+ II+ F + + L + +IL +G+ P +
Sbjct: 8 RIGLKPRDYLLKIVLPAVIASIILIIFGFMFFSGITLYLYLTLPIIILASAIGY--PYIV 65
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + K I + + ++ LR ++E+ E L +
Sbjct: 66 LDSQKNK----INERLHIFITKFGTLSITDLNRKDLLRILSEEKEELGELAKESEKLYVL 121
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + A RT + L + G + + L +
Sbjct: 122 TNTWGRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKEFLIKEQDIVMDDYAAFY 181
Query: 288 EKKAASLGPKLTVPM-----IIFFLPVLILV-IIGPAILSIIDTMK 327
+ SL + + + FFL ILV + P + T+
Sbjct: 182 RRMLYSLDLYKELYVSAMTSVAFFLAFSILVPYLIPYDFVFMATLA 227
>gi|326943573|gb|AEA19466.1| membrane protein, putative [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 310
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 70/213 (32%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + ++ F + + ++ GF P + ++
Sbjct: 77 MYWVYTILSGMSIAAVFYFSFGRDP---------FTLISVLCGFLVPRFLLYRRKKRYYL 127
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 128 VVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 184
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S GT+ L + + ++L A +++
Sbjct: 185 AFRGFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQA 244
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P++I+++ A + +M
Sbjct: 245 QRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|315605668|ref|ZP_07880701.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312623|gb|EFU60707.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 425
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + T A L + A+E AL + G + L +
Sbjct: 322 ETLAWTAASLRLGVSWAEAWEEAPG-----WAHPLRDALEAAWTCGAAPELMLARCAAWE 376
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
R RL +A+ KA LG +L P+ +FFLP + + IGP + ++
Sbjct: 377 RRMRLADAKTKAEELGVRLVAPLGLFFLPAFLALGIGPLLAYLM 420
>gi|44004390|ref|NP_982058.1| membrane protein, putative [Bacillus cereus ATCC 10987]
gi|42741456|gb|AAS44901.1| conserved membrane protein, putative [Bacillus cereus ATCC 10987]
Length = 310
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + ++ + F G ++ GF
Sbjct: 53 GIRMYLPQSVIQEAQKYEWKLTKSMYWVYTILSGMSIAAIFYFSFGRDPFTLISALCGFL 112
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + ++ + + + ++ + + L +V + + EE+
Sbjct: 113 VPRFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 169
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF+ F + + L S G + L + +
Sbjct: 170 EKVSLLLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 229
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 230 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|258652940|ref|YP_003202096.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
gi|258556165|gb|ACV79107.1| type II secretion system protein [Nakamurella multipartita DSM
44233]
Length = 302
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 6/200 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + A G + + P + ++RQ + A + L
Sbjct: 55 VVGGALAAIGVLALTGWPVAAAAAGGLIWAWPRLVGGVQAEQRQIARLDALVAWTESLRD 114
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ S++ AL A S + +L + ++ A +
Sbjct: 115 TIAGHHSLENALPSSAVH---ASPLIRPALLRLVGQIRARVPVDRALVMLADELNDPSAD 171
Query: 253 NATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL- 310
L+ + R G + L L + R E M A + +I+ V
Sbjct: 172 LVIAELVLSAKRRGDGLQQRLSSLATTAREELEMRRRIFADRAEIRRGTQIIVVVTVVFA 231
Query: 311 -ILVIIGPAILSIIDTMKDH 329
+LV+ G + T+
Sbjct: 232 GLLVVFGGDYVRPYSTLSGQ 251
>gi|21234166|ref|NP_639743.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
gi|13620652|emb|CAC36691.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 330
Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 4/182 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ I G L + + +L G P V + + A L+ L
Sbjct: 64 LATIAGVVTLGVWAYTGWPIHGLLAGAAVLGLPFVLNPGTSAQARIERLEALAQWLNHLA 123
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+GI + +R A++ P++ + L AFE F +
Sbjct: 124 GVHTAGIGLPATIRASAKN---APSPIAASVRTLSERLRSGMEAHDAFELFADEMADGVF 180
Query: 252 RNATQALI-QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + G + D+L + + + +A + + ++ + ++
Sbjct: 181 DHVVLLFQSHAVYKGPGLADALEAMAVTIHQQAADARDIEADRAKVRKSARLVSIVICIV 240
Query: 311 IL 312
+L
Sbjct: 241 VL 242
>gi|313672382|ref|YP_004050493.1| type ii secretion system f domain [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939138|gb|ADR18330.1| Type II secretion system F domain [Calditerrivibrio nitroreducens
DSM 19672]
Length = 407
Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 8/159 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S ++K + +GI I LRR+ Q + E + I
Sbjct: 54 LSQKLKKYEKVRLEELIVFTRQFASLFAAGIPILTILRRLESQNYSQK--MKETISTIIK 111
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ +AF R D + +++ G + L+ L ++
Sbjct: 112 DIEAGTPLSIAF-----RKHKDIFSDLYINMLRVGEEGGVLDIVLQRLALILETDLDTRN 166
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K A+ PK+ V I+ +L+ +I P + +
Sbjct: 167 KIKNATRYPKMVVSAIVIAFVILMTFVI-PKFVGLFSKF 204
>gi|189016766|ref|YP_001711805.1| hypothetical protein CMS_pCSL0076 [Clavibacter michiganensis subsp.
sepedonicus]
gi|167728937|emb|CAQ03319.1| putative membrane protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 293
Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/294 (11%), Positives = 93/294 (31%), Gaps = 21/294 (7%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRT 74
+A+ I + +V+ L ++ ++ +T+ + + +
Sbjct: 5 LIALLPGALIGLGLAVLVLQLAPRVMLAD--DALTRLGDLTAAPTVTTSTRADRAGTWIS 62
Query: 75 RDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
R ++R F +L ++ +L + I I +
Sbjct: 63 RRMPNVRGFAAPTKELDLLEI----------------PVSTFYARKLQLAAIGFIGPLFL 106
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV 194
+ L + F L + + V + +P + ++ + R L+L+ + +
Sbjct: 107 PIVFQLALGFFFPLPLLLSPALALVMWLSPDATVRTKARQARREFTRFVTVYLELVAVTL 166
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
+ D AL + A + ++ A + + ++ + +
Sbjct: 167 LGTTTPDSALSKAASLSDTWAFRRIRREYQIADLTR--VSKWDALDRLGEQLEVPALTDM 224
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ + + + D LR + R++ + AA +T P++ +P
Sbjct: 225 ARMMRLGEARVG-LRDQLRAACDKLRAKVAADDLDAAARATSAMTYPVLATLIP 277
>gi|86742016|ref|YP_482416.1| type II secretion system protein [Frankia sp. CcI3]
gi|86568878|gb|ABD12687.1| type II secretion system protein [Frankia sp. CcI3]
Length = 294
Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/261 (12%), Positives = 74/261 (28%), Gaps = 6/261 (2%)
Query: 55 LRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN 114
+ + + A R + + ++ + L G
Sbjct: 27 RSLRPTPAPDQQPARGATGGRWAGQVHRRFEQTVGPVWARRLLLAEDLAVLGLD---PAA 83
Query: 115 ILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
+ + ++ + G+ + P + GF +
Sbjct: 84 HTATRMIRLLVVVSATVGLAAVGWASGIVLPATTLPLGCVAAVPFGFVWADRPLHRRASA 143
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + A LDL+ I + G+S+ AL+ A+ G +E +
Sbjct: 144 RRQETRLAVAAYLDLVRILLVGGLSLHTALQTAADAGRGW--AFTEIRAALQWARARHVP 201
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R + + + R G S +L+ + R+ +A A+
Sbjct: 202 PDAGLNRLAVRVPVAEFAELRLTVSSALR-GASPVLALQSKSTHLRAAEAAQARLAASVA 260
Query: 295 GPKLTVPMIIFFLPVLILVII 315
+ +P ++ L + + I
Sbjct: 261 DAAMELPAVMVALAFVAFLTI 281
>gi|225871556|ref|YP_002752914.1| hypothetical protein BCA_A0067 [Bacillus cereus 03BB102]
gi|225785496|gb|ACO25714.1| putative membrane protein [Bacillus cereus 03BB102]
Length = 310
Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/228 (11%), Positives = 72/228 (31%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + I+ + F G ++ GF
Sbjct: 53 GIRMYLPQSVIQGAQKYEWKLTKSMYWIYTIFSGMSIAAIFYFSFGRDPFTLITVLCGFL 112
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + ++ + + + ++ + + L +V + + EE+
Sbjct: 113 VPRFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 169
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF F + + L S G + L + +
Sbjct: 170 EKVSLLLEGGTTMHRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 229
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 230 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|229020884|ref|ZP_04177583.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273]
gi|229027756|ref|ZP_04183937.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272]
gi|229035194|ref|ZP_04189130.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271]
gi|228728086|gb|EEL79126.1| hypothetical protein bcere0028_52120 [Bacillus cereus AH1271]
gi|228733548|gb|EEL84351.1| hypothetical protein bcere0029_59410 [Bacillus cereus AH1272]
gi|228740416|gb|EEL90715.1| hypothetical protein bcere0030_53430 [Bacillus cereus AH1273]
Length = 307
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + ++ + F G ++ GF
Sbjct: 50 GIRMYLPQSVIQEAQKYEWKLTKSMYWVYTILSGMSIAAIFYFSFGRDPFTLISALCGFL 109
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + ++ + + + ++ + + L +V + + EE+
Sbjct: 110 VPRFLLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 166
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF+ F + + L S G + L + +
Sbjct: 167 EKVSLLLEGGTTMHRAFKGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 226
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 227 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 274
>gi|300933725|ref|ZP_07148981.1| hypothetical protein CresD4_06604 [Corynebacterium resistens DSM
45100]
Length = 377
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 83/229 (36%), Gaps = 14/229 (6%)
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC 162
AG R ++ +LL + + I+ +G+ + + + VG+V+ V +
Sbjct: 151 AMAGAR--LTVTVLLALPIGAVILGQTMGLGTPQFFVRNPLGALLVLVGSVLGCAGVQWT 208
Query: 163 APSVWISNLV---------QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ +K+ LD+ ++ G+ ++A + + G
Sbjct: 209 EFLTRSQWKLVGGGSRAGPEKQVGLTSLDIARGLDIFTAALQVGLPTNRAWTVMVQHWGP 268
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ ++ +LT+ L + + A++ V +Q R GT++
Sbjct: 269 DKLAEADRDVLTVGHLLDMGDFAQAWKKLKAHVGFGPVAR---QALQQARSGTALSVGAG 325
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
R EA A + L P+ + FLP+ ++V + P + +
Sbjct: 326 AQAQRLRQHANNEATAAAEKMLVVLAAPLTLCFLPMFVVVGLLPLAIGL 374
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 5/170 (2%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ ++ G+ A V L KR + + + ++G + A+ A
Sbjct: 4 AIVWAAVVVMWGYVAAHVAQRILRDKRTRRKIELEREFIGAVSRESQAGARPEDAVLAAA 63
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE----NFYNRTQMDCVRNATQALIQSDRY 264
+ + +++ L+ LS ++ VA + + + + Q +
Sbjct: 64 QFVDDEAIANGALQLVARYRLSIQGDKDVAADAGEGAEHGSSTQRNLGYFCQLWGIATER 123
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
G + + + + ++A G +LTV ++ LP+ +++
Sbjct: 124 GIPLSVLAEAYACDIDAALERREKYESAMAGARLTV-TVLLALPIGAVIL 172
>gi|260579400|ref|ZP_05847282.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258602529|gb|EEW15824.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length = 374
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 14/230 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA- 163
AG R ++ + L V V LG + + L F + VG V
Sbjct: 148 AGARLTVTVLLALPVGAVALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLWTEHLS 207
Query: 164 ------PSVWISNLVQKRQSSIKRAWPDAL--DLLLICVESGISIDQALRR-VAEDIGGQ 214
P + S++ A D+ + SG ++ A V + I
Sbjct: 208 ESLTTSPLGGVGVRAGPAGSTLMGPLDAARALDVSAAALRSGKALLPAWDVGVGQLIQNG 267
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
E+ +A L+ Q A+ + + Q R GTS+ D +
Sbjct: 268 EHDGEGELGRAMALLNLGGG-QDAWLTLA---DHPLLGPIARQAAQQTRAGTSLADGMHQ 323
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R +A A + L P+ + FLP + V + P + +
Sbjct: 324 QAEHLRRVAADKATAGAEKVLIALAAPLTLCFLPAFVFVGLIPLAIGMAS 373
>gi|218883478|ref|YP_002427860.1| type II secretion system protein [Desulfurococcus kamchatkensis
1221n]
gi|218765094|gb|ACL10493.1| type II secretion system protein [Desulfurococcus kamchatkensis
1221n]
Length = 562
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 4/193 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + + L + + L V ++++ + S + R
Sbjct: 12 VYASFTGFMFLVSLVASISLIVLAVFLFHNPLLVIILVILPTIVLLLMVSLPSLIATSRA 71
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPN 234
SSI +P L V SG+S A RV I +S L++ +L L +
Sbjct: 72 SSIDGEFPFLSAYLSTMVMSGLSPYIAFERVLRGSIIFKRSSELAQRFILLSRVL--GRD 129
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
AF+ R V+ I + + G + D L +E L+ + A L
Sbjct: 130 PLTAFDELSQRVASSRVKETLSGYIATVKAGGDVIDYLNKRSRLLFNEMLVGMKIIADRL 189
Query: 295 GPKLTVPMIIFFL 307
G L + + L
Sbjct: 190 GGLLEAYLAMVLL 202
Score = 42.9 bits (99), Expect = 0.076, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 71/215 (33%), Gaps = 9/215 (4%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L G L +RL F+ ++ + + + ++I +
Sbjct: 278 LSLFGIFFYLMLPPYNPLRLNPVTQFIGEMLLLFGVGNPPGYMYSTIALSTALIIATIPG 337
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+++S R+ + R L L+ ++G+ ++++ E ++
Sbjct: 338 FIYYLYVS-----REYKVVRGITRFLRDLVEVRKTGLPPERSII---ELSSRDYGVFTQY 389
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ ELS + + + + + L S G + L L S
Sbjct: 390 LRKAAMELSIGVPLRRIIDELMKKIRSWTGQVLLFILTDSIEVGGGTVEVLENLAWFAES 449
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+E EKK SL + VP + L + ++ +
Sbjct: 450 VEAIEDEKK-RSLRTLMIVPYMGGILSAVTVIYMV 483
>gi|239934068|ref|ZP_04691021.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 319
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 60/213 (28%), Gaps = 14/213 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFL----------ILGIIWIFGYDKLLEYPFQLRVGAVI 154
AG + + + + + + +
Sbjct: 22 AGIVGTTAPRRAPLWQRWRALGGGPEQSADVRMRRRALAAAAVVVFAGVWLASGNFVGGV 81
Query: 155 LIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQ 214
L+G P + V + A + L + G+ ++QA+ + G
Sbjct: 82 LLGAAVIGVPWLITPAQVAAGRIGQLEALSEWTQRLAGLLRLGMGLEQAMITSRK---GA 138
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD-RYGTSIGDSLR 273
L+E++ L + A F + T ALI S G + +L
Sbjct: 139 PDALAEQITGLSDRLRLGWRPEEALRAFADELDDVTADKVTAALILSVNDRGPGLAQALE 198
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
L R E + +A P+ TV + F
Sbjct: 199 DLAGTVREEVAKKRGIEADRAKPRTTVRWMTFI 231
>gi|228950019|ref|ZP_04112207.1| hypothetical protein bthur0007_60910 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809666|gb|EEM56099.1| hypothetical protein bthur0007_60910 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 292
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/201 (10%), Positives = 65/201 (32%), Gaps = 16/201 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + ++ F + + ++ GF P + ++
Sbjct: 59 MYWVYTILSGMSIAAVFYFSFGRDP---------FTLISVLCGFLVPRFLLYRRKKRYYL 109
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 110 VVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 166
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S G + L + + ++L A +++
Sbjct: 167 AFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQA 226
Query: 297 KLTVP---MIIFFLPVLILVI 314
+ +I+ +P++I+++
Sbjct: 227 QRAFVQNCLIVIAMPIVIMLM 247
>gi|296109771|ref|YP_003616720.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
gi|295434585|gb|ADG13756.1| Type II secretion system F domain protein [Methanocaldococcus
infernus ME]
Length = 557
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 25/234 (10%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
+ AG + ++V +V I+ +I+ L + +LI V
Sbjct: 5 IIRAGLNPKEYFIKIVVPSFIVSILLIIIA------IKFFSGVILYLFIVLALLILGVAL 58
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P + + NL K + + L I + + + L E++G + +
Sbjct: 59 AYPYILLDNLKNKINERL-HIFITKFGTLSITDLNRKDLLKILSEEKEELGQLAEESRKL 117
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+L + A RT + L + G + + L
Sbjct: 118 YVLVDKWSR---SLAEACRFLAQRTPSPEFADFLDRLAFALDSGEDLKEFLIKEQDIVMD 174
Query: 282 ----------ERLMEAEKKAASLGPKLTV-----PMIIFFLPVLILVIIGPAIL 320
L ++ S ++ ++ F +P + + +
Sbjct: 175 DYEAFYNRVLRSLDLYKELYVSAMTSISFLLAFAILVPFLMPFSFIFMAVAGVF 228
>gi|206972822|ref|ZP_03233744.1| membrane protein, putative [Bacillus cereus AH1134]
gi|206731706|gb|EDZ48906.1| membrane protein, putative [Bacillus cereus AH1134]
Length = 310
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 71/213 (33%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + +++ F + + ++ GF P + ++
Sbjct: 77 MYWIYTILSGMSIAVVFYFSFGRDP---------FTLITVLSGFLVPRFLLYRRKKRYYL 127
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 128 VVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 184
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S GT+ L + + ++L A +++
Sbjct: 185 AFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQA 244
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P++I+++ A + +M
Sbjct: 245 QRAFVQNCLIVIAMPIVIMLMSKEAYGYLAGSM 277
>gi|258511163|ref|YP_003184597.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477889|gb|ACV58208.1| Flp pilus assembly protein TadB-like protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 284
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 7/186 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + F + + + F P +++ + ++ + +KR A L+ +
Sbjct: 76 VSFAMPLLVAAILFVIGWYWAMPLSLCAFFLPYFYLNRVYKRARLLLKRQLRQARLLIAL 135
Query: 193 CVESGISIDQALRR----VAEDIGGQSVPLSEEMLLTIAELSFLP---NRQVAFENFYNR 245
E+G I++++ + + +S + + AF R
Sbjct: 136 LTEAGAPIERSIAAAESVTSHPLKPYLRDVSIAIGASEDAKDAGMRVQTVVEAFMGMAER 195
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ Q L QS RY T + D + + R EAE + + K++ +
Sbjct: 196 LHLPEATQFAQLLTQSARYNTPLVDMMFTSLDIEERIRDTEAELRYNNAISKISYISTLG 255
Query: 306 FLPVLI 311
+
Sbjct: 256 LGIPVF 261
>gi|68537056|ref|YP_251761.1| hypothetical protein jk1961 [Corynebacterium jeikeium K411]
gi|68264655|emb|CAI38143.1| putative membrane protein [Corynebacterium jeikeium K411]
Length = 374
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 72/230 (31%), Gaps = 14/230 (6%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA- 163
AG R ++ + L V LG + + L F + VG V
Sbjct: 148 AGARLTVTVLLALPVGAAALGQSSGLGTLTFLLTNVLGVLLFLVGVGLVCAGTLWTEHLS 207
Query: 164 ------PSVWISNLVQKRQSSIKRAWPDAL--DLLLICVESGISIDQALRR-VAEDIGGQ 214
P + S++ A D+ + SG ++ A V + I
Sbjct: 208 ESLTTSPLGGVGVRAGPAGSTLMGPLDAARALDVSAAALRSGKALLPAWDVGVGQLIQNG 267
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
E+ +A L+ Q A+ + + Q R GTS+ D +
Sbjct: 268 EHDGEGELGRAMALLNLGGG-QDAWLTLA---DHPLLGPIARQAAQQTRAGTSLADGMHQ 323
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
R +A A + L P+ + FLP + V + P + +
Sbjct: 324 QAEHLRRVAADKATAGAEKVLIALAAPLTLCFLPAFVFVGLIPLAIGMAS 373
>gi|294055120|ref|YP_003548778.1| Type II secretion system F domain protein [Coraliomargarita
akajimensis DSM 45221]
gi|293614453|gb|ADE54608.1| Type II secretion system F domain protein [Coraliomargarita
akajimensis DSM 45221]
Length = 383
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 8/160 (5%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
KR+ L +E+G+ + AL A++ ++ S + E
Sbjct: 32 YEKQAKRKKIKLAQLTVFTQQLAAMLEAGLPLVSALE--AQEEQTENPVFSIIVRNVRNE 89
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+S + A ++ N +++++ ++ + L + +
Sbjct: 90 VSAGRSFSDACSDYPNAFPN-----LFISMVEAGEASGNLAEILDKTSVYFEDMVKLVRQ 144
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
K A P + + + L ++LV + P + +
Sbjct: 145 VKGALTYPVAVIGLAV-ILVNVLLVAVIPVFAEMFTSFGQ 183
>gi|331694287|ref|YP_004330526.1| Type II secretion system F domain-containing protein
[Pseudonocardia dioxanivorans CB1190]
gi|326948976|gb|AEA22673.1| Type II secretion system F domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 243
Score = 49.8 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+LL +C+E+G+ + A+ A + G P + L + A++ R
Sbjct: 107 ELLAVCLEAGMPVSTAVEAGAAQLDG---PSGRALRRVAGLLELGADPAEAWQAVDGR-- 161
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ +A +S G I R R+E + A +A +T P+ + FL
Sbjct: 162 -PALVAFARAARRSAATGAGIAHVARTEAQRLRAETVDSARARAQRAAVTITGPLGLCFL 220
Query: 308 PVLILVIIGPAILSI 322
P +++ I P ++ +
Sbjct: 221 PAFLVLGIAPVVVGL 235
>gi|323478676|gb|ADX83914.1| type II secretion system protein [Sulfolobus islandicus HVE10/4]
Length = 658
Score = 49.8 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQF--PLFKAMKKEALLIIRDIDLFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|311896985|dbj|BAJ29393.1| hypothetical protein KSE_35890 [Kitasatospora setae KM-6054]
Length = 265
Score = 49.8 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 8/228 (3%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AG R + VR V+ + + + G + + A L + +
Sbjct: 42 AGARDGAPGRTAVAVRRVLGWLSGERPLALLLGAAAGALVGGRAGLVAGPLACWAAWRLL 101
Query: 165 SVWISNLVQKR---QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
S ++R + + R P +LL+ C+ S S A P+ E
Sbjct: 102 PRVRSPDERRRAAERDWLVRQLPLTAELLVACLGSSGSPA---EAAAAVADSVPSPMRER 158
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ A+L+ + +E + + L ++ G +L L R+
Sbjct: 159 LSGVAAQLALGAEPEHCWEQLAA--DCPPLAPLARCLARTSLSGAPPTAALAGLAQAQRA 216
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
A + G T P+ + FLP +L+ + P + + H
Sbjct: 217 AAARAAHARVRRAGVLATAPLGLCFLPAFVLIGVVPVVTGLTTAFSRH 264
>gi|229586069|ref|YP_002844571.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
gi|228021119|gb|ACP56526.1| type II secretion system protein [Sulfolobus islandicus M.16.27]
Length = 658
Score = 49.4 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQF--PLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|269955644|ref|YP_003325433.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304325|gb|ACZ29875.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 289
Score = 49.4 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 65/185 (35%), Gaps = 5/185 (2%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ ++ + F V AV++ PS+ + + R + ++ + L
Sbjct: 55 VLAGAGLAAGVVVWAFTHWVLAVVVAPIAALGLPSLLTAAPAKARIARLEA-LEEWTRSL 113
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ +G+ ++QAL + L ++ L A L+ + + A F +
Sbjct: 114 SGVLVAGVGLEQAL---VSTLRSAPTVLEPQLRLLTARLNARWSTEAALRAFADDLDDAT 170
Query: 251 VRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
LI + R G + L L ++ + +A P+ T +
Sbjct: 171 GDLVAANLILAARRRGAGLATVLASLADSVAADVRSRRQIEADRAKPRATARWVTIISAG 230
Query: 310 LILVI 314
++LV+
Sbjct: 231 VLLVL 235
>gi|228925184|ref|ZP_04088294.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228834523|gb|EEM80052.1| hypothetical protein bthur0011_60560 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 292
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 70/213 (32%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + ++ F + + ++ GF P + ++
Sbjct: 59 MYWVYTILSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFLLYRRKKRYYL 109
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 110 VVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 166
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S GT+ L + + ++L A +++
Sbjct: 167 AFRGFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQA 226
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P++I+++ A + +M
Sbjct: 227 QRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 259
>gi|320531263|ref|ZP_08032242.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136530|gb|EFW28499.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 283
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 4/144 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
+ + P + IS+ + R++ ++ WP+A+D L+ V +G+S+ +AL + E
Sbjct: 76 VALSFASIFTAVPFLIISSRARNRRTRLREVWPEAVDTLVSGVRAGMSLPEALTNLGE-- 133
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGD 270
+ + + + + + R +AL + G +G
Sbjct: 134 -RGPEAVRPQFRAFATDYAASARFDSSLDRLKARFADPVADRIVEALRLAHEVGGTDLGT 192
Query: 271 SLRVLVSETRSERLMEAEKKAASL 294
LR L R + E +A
Sbjct: 193 LLRSLSQMLREDMRTRGELEARQS 216
>gi|167628706|ref|YP_001679205.1| hypothetical protein HM1_0589 [Heliobacterium modesticaldum Ice1]
gi|167591446|gb|ABZ83194.1| hypothetical protein HM1_0589 [Heliobacterium modesticaldum Ice1]
Length = 290
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 99/284 (34%), Gaps = 18/284 (6%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
++ + + +++ ++D +++ SL + K + N L+AA
Sbjct: 22 DALKLPTLGAARAMLSTGRRDKKAAKTMETWLMSLAVRLSKHIPMDEYKKNRMNNILKAA 81
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + + I+ + A++ + + + +
Sbjct: 82 GIGVTPEVYAAYAMVKAGMILLSAI----------PCLLLLPPLSPALVFLAVLVYFKET 131
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+++++ I+R P + + ++S + + ++ G + E+ +
Sbjct: 132 RKADEQLREKRERIERELPRFVATVEQTLKSSRDVLAMMENYKKNAGEA---FARELDIV 188
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
A++ + + A F R + + + LI R G ++L + ++ L
Sbjct: 189 TADMRS-SSYEAALTRFEARLNSPMLSDVVRGLIGVLR-GDDSAVYFQMLAHDFKALELQ 246
Query: 286 EAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +A + K+ + M++ FL + VI + S+
Sbjct: 247 RLKGQAQKIPSKIRVFSFIMLMCFLFTYLAVIAYEIVKSLNAMF 290
>gi|227828862|ref|YP_002830642.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
gi|227460658|gb|ACP39344.1| type II secretion system protein [Sulfolobus islandicus M.14.25]
Length = 658
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQF--PLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|323475960|gb|ADX86566.1| type II secretion system protein [Sulfolobus islandicus REY15A]
Length = 658
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQF--PLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|238621054|ref|YP_002915880.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
gi|238382124|gb|ACR43212.1| type II secretion system protein [Sulfolobus islandicus M.16.4]
Length = 658
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFVFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQF--PLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|228912546|ref|ZP_04076211.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL
200]
gi|228847116|gb|EEM92105.1| hypothetical protein bthur0013_66050 [Bacillus thuringiensis IBL
200]
Length = 307
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 69/213 (32%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + ++ F + + ++ GF P + ++
Sbjct: 74 MYWIYTILSGMSIAAVFYFSFGQDP---------YTLITILCGFLVPRFLLYRRKKRYYL 124
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 125 VVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 181
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S G + L + + ++L A +++
Sbjct: 182 AFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQA 241
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P+LI+++ A + +M
Sbjct: 242 QRAFVQNCLIVIAMPILIMLMSKEAYGFLAGSM 274
>gi|332671125|ref|YP_004454133.1| Type II secretion system F domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332340163|gb|AEE46746.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
484]
Length = 286
Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 17/202 (8%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
+ L AG ++LV V +L
Sbjct: 34 WQARTQDHLVQAGMGGVTPAGLVLVSGGVG-------------VLGLVLGLAVTRVPSMA 80
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
+ +G APS + + ++R++ ++R WP+ +D L + +G+++ +AL A+
Sbjct: 81 LCLGAFVAMAPSALVRSRARRRRARLRRLWPEVVDHLASGIRAGLALPEAL---AQIGER 137
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSL 272
V L E + + + R +AL + G +G L
Sbjct: 138 GPVELREPFVAFAEDYRATGRFGECLDLLKARLADPVADRIVEALRMTRDVGGTDLGRLL 197
Query: 273 RVLVSETRSERLMEAEKKAASL 294
R L + R + E +A
Sbjct: 198 RTLSTFLREDLRTRGELEARQS 219
>gi|260905509|ref|ZP_05913831.1| hypothetical protein BlinB_09275 [Brevibacterium linens BL2]
Length = 196
Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ IC+ SG+ I AL AE G +S + ++ A + ++
Sbjct: 69 VAICLTSGLPIPVALALTAEATGDRSG-----LGRVARSMTIGGQELSADDRLLPVLEVF 123
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
S+ G + + E R ++ AA+LG KL VP+ + LP
Sbjct: 124 EF---------SEHTGVGPAPLIESVAKELRDSSRRRRQEAAAALGVKLVVPLGVCILPA 174
Query: 310 LILVIIGPAILSIIDTM 326
+L+ + P ++S++ +
Sbjct: 175 FLLLSVVPVVISLLSDL 191
>gi|308178276|ref|YP_003917682.1| hypothetical protein AARI_24940 [Arthrobacter arilaitensis Re117]
gi|307745739|emb|CBT76711.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117]
Length = 178
Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI------KRAWPDALDLLLICVESGIS 199
+ + + P+ W + + R I + LDL ++SG+
Sbjct: 1 MIILILLCGALAIALAMDPANWKNQAARARHRVIGRGRAQENPIELILDLSASLLDSGMP 60
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
I Q L + I + L A+E + +AL
Sbjct: 61 ITQILDLLGNSIEQ-----CAVLRSVARCLEMNMAWDKAWEAVPG-----WLMPLRKALH 110
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ G LR R E + + A G +L +P+ LP I + + P I
Sbjct: 111 FAHATGAPAASLLRNTAILQRREHTQKVARLGAQFGTRLVLPLGACALPAFIALGVVPLI 170
Query: 320 LSIIDTMK 327
+++ + +
Sbjct: 171 IALFPSFQ 178
>gi|225026645|ref|ZP_03715837.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
gi|224956015|gb|EEG37224.1| hypothetical protein EUBHAL_00896 [Eubacterium hallii DSM 3353]
Length = 191
Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 180 KRAWPDALDLLLICVESGISIDQ----ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ + + L ++ +++G S++ AL+ + E Q+ P+ +M I L
Sbjct: 46 EKGFQNLLQSMMTSLQAGYSLNNSCRIALKELEELYQDQNNPMLRQMRRIIQGLDLHIAL 105
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ F F T ++ + + G ++ + L+ + + + E E + L
Sbjct: 106 EQLFMEFAESTGLEEAKQFAVVIEIVRSTGGNMVEILKRTMQHLKYKMDTEEEIRVL-LS 164
Query: 296 PKL 298
KL
Sbjct: 165 GKL 167
>gi|228942721|ref|ZP_04105249.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228975832|ref|ZP_04136362.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228982327|ref|ZP_04142603.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
gi|228777432|gb|EEM25723.1| Hypothetical membrane protein [Bacillus thuringiensis Bt407]
gi|228783858|gb|EEM31907.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816932|gb|EEM63029.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326943833|gb|AEA19723.1| Hypothetical membrane protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 297
Score = 49.0 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/311 (14%), Positives = 112/311 (36%), Gaps = 18/311 (5%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
+ T + +F L+++++ + +R + + + + + + L
Sbjct: 3 LLTTIPLFLLLFSLIYLVV--DYAFERRNNKKFQIHKYIGRYRKNEENRTFLFMLFEPIL 60
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFG 137
K +N++ + +E + KL A + + L+ +LV+ I + +I+ +
Sbjct: 61 KLKKNWIPQRM------EEELNIKLDKANL--KITPIEFLLKKLVISIFVFLFALIYAWI 112
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ + + + + F +V ++++++ R+ ++ P+ + L +
Sbjct: 113 FPQYKLIILTVGLIIS----ALVFFYENVRLNSIIKSRELRLELELPELMIPLGFMLSKF 168
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
A I S + +A+L P + F + A
Sbjct: 169 ----SAFEATKRSIEYASDSIKPYAEELVAKLELEPGSHEPYIEFAKALNIPSAYQFMVA 224
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
L QS + + E + E+ K + P L IIF ++++I+G
Sbjct: 225 LEQSMKMDEEKSKEIINAQIEVMQKLQSESHDKLVKMRPGLVSKYIIFAYLGMVILIMGI 284
Query: 318 AILSIIDTMKD 328
+ +SI D +
Sbjct: 285 SFVSIFDKFVN 295
>gi|126459955|ref|YP_001056233.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
gi|126249676|gb|ABO08767.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
Length = 261
Score = 49.0 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 74/213 (34%), Gaps = 7/213 (3%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
S R + ++ + L G L + ++ G + F +
Sbjct: 9 RQSGLAFSYRRYLAALVLIPLASGAAGGVAALFLLGPVAALAVGLMAGLLAFAGVVAYPL 68
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+LV R+S + + L ++L +G+ + + + R+AE + ++ E L E+
Sbjct: 69 HLVSARRSHFENNFVYTLAVMLPLFAAGVPLGRVIARLAEVEADKY--IAREFALVTREV 126
Query: 230 S-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
A + R R L ++ R + + L + + ++A+
Sbjct: 127 VVMGATPTEALLHSAERVPSQAYRETVNLLAKASRVTERVDEVLLARLEWMLRGKQVKAQ 186
Query: 289 KKAASL----GPKLTVPMIIFFLPVLILVIIGP 317
SL + M++ L ++ + + P
Sbjct: 187 SLVRSLALLFEIYVVAAMLLPILVAILALALSP 219
>gi|332982952|ref|YP_004464393.1| Type II secretion system F domain-containing protein [Mahella
australiensis 50-1 BON]
gi|332700630|gb|AEE97571.1| Type II secretion system F domain protein [Mahella australiensis
50-1 BON]
Length = 301
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 34/302 (11%), Positives = 87/302 (28%), Gaps = 45/302 (14%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ VAI AV++ + + R
Sbjct: 1 MIVAILAAVAVMICMLIFMSYQDYKD-----------------------------YELRR 31
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
+ +R K A L + N + AA ++ ++ L + + I
Sbjct: 32 RINRMLIRKQPDKFKPFAFLGETNDKLVMAAAELIPGMDPDMFIIYGLYIMAGVIAAAGI 91
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
+ L+ + +++ N R +++ + + +
Sbjct: 92 -------------TGNILYGFLLDVLIIVLTMMYLDNRRSNRIYKLEQQFGAFTRDVSVY 138
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+ + ++ +A+ V E G PL + + I + + + F T +D +
Sbjct: 139 LRANPNLYRAIESVTEYAG---QPLKQYLDAFIRRVESGEPIDESLKQFKTETNIDSISE 195
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
++I + + I D + + A K ++ + ++++
Sbjct: 196 WVDSIIFARMAKSDITDVCDHSADRINRKLVRGMNIHAVLSKTKGAAFAMLGLIALMVVY 255
Query: 314 II 315
I
Sbjct: 256 TI 257
>gi|41615061|ref|NP_963559.1| hypothetical protein NEQ268 [Nanoarchaeum equitans Kin4-M]
gi|40068785|gb|AAR39120.1| NEQ268 [Nanoarchaeum equitans Kin4-M]
Length = 293
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/205 (11%), Positives = 71/205 (34%), Gaps = 7/205 (3%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L +++ I+ L ++ + + + ++I ++ +++ S + +R+
Sbjct: 53 LPTSILIGILICFLANLFKISILQNTTIIILITIILFLIIFHLILLFYTIYPSIRIPQRK 112
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNR 235
+SI++ P A + +G R ++ + +E + + +
Sbjct: 113 ASIEKNLPYATLYMATIANTGAPPIAIFRFLSRMPD--FGEIRQEAKDIVEMVDVLGQDL 170
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS----ETRSERLMEAEKKA 291
A + + L G + + L + E R + +
Sbjct: 171 LRALDKKAKYSPSKQWAELLIGLKTILESGGDLSEYLYRMSDLYSRELRRKVQQFGDLLM 230
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIG 316
+ LT+ ++ F +++ +I+G
Sbjct: 231 MVVEMYLTLVIVGGFFMIILSLIMG 255
>gi|256832095|ref|YP_003160822.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
gi|256685626|gb|ACV08519.1| type II secretion system protein [Jonesia denitrificans DSM 20603]
Length = 284
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + ++++ + WPD +D L+ V +G+ + +A+ A L EE
Sbjct: 89 PFIIVKSRAERQRIRRREVWPDVVDHLISGVRAGLPLPEAV---AHLGMRGPEQLREEFA 145
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSE 282
+ E R +AL + G IG L L + R +
Sbjct: 146 IFGREYRATGRFDDCLITLKERLADPTADRVIEALRVTRSVGGTEIGHLLSTLATFLRQD 205
Query: 283 RLMEAEKKAASL 294
+ E +A
Sbjct: 206 LRVRGELEARQS 217
>gi|256389282|ref|YP_003110846.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256355508|gb|ACU69005.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 234
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 3/121 (2%)
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
R+ + +++ L N + +R +A+ ++ G
Sbjct: 116 RLGTLGERAAAEMADRFQEVAHLLRLGGNPITTWRVVA---AEPGLRPVAEAIGRAGLSG 172
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
S+R ++ R ER + A G + P+ FLP +L+ + P +L +
Sbjct: 173 APPVASIRACATDLRKERHAASTAAARRAGVRGVAPLAGCFLPAFVLIGVTPIVLGLAHH 232
Query: 326 M 326
+
Sbjct: 233 L 233
>gi|320533996|ref|ZP_08034554.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133784|gb|EFW26174.1| type II secretion system F domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 291
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 4/190 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ G + L + + G + P ++ +K ++ A
Sbjct: 49 GLSGRLIACLVVGLGVLLLTRWIVLAVAAGVLVLVWPLLFGGAKQEKLAAAKIEALATWS 108
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
+ L + + ++QA+ + + L E++ L + A F +
Sbjct: 109 ESLRDTIAGAVGLEQAIPAT---VYAAAPVLREDLALLADRMRVRVPLPTALRQFADDLD 165
Query: 248 MDCVRNATQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
ALI + R G + L L RSE M A+ G + + +++ F
Sbjct: 166 DPTADLIVSALIMNARLRGPGLRQLLGALADTARSELDMRQRVSASRAGTRRSAQIVVIF 225
Query: 307 LPVLILVIIG 316
V++L +
Sbjct: 226 SIVVMLGLAV 235
>gi|323702225|ref|ZP_08113891.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
DSM 574]
gi|323532715|gb|EGB22588.1| hypothetical protein DesniDRAFT_1103 [Desulfotomaculum nigrificans
DSM 574]
Length = 260
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 74/210 (35%), Gaps = 12/210 (5%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G + + L L I + + + + V + +++ +G+ P
Sbjct: 21 GTPDKQTTKNWLEKYLYPAGCAAIFFTLGSWAF---------MTVLSGLILAVLGWKLPG 71
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
I+ + ++R ++ D + +G S + + +++ + EM +
Sbjct: 72 YIINLVREERIRQVREKAKDFVMAASGLYSTGQSDTEVISTMSKRLPEPLASELHEM-VV 130
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDS--LRVLVSETRSER 283
++ + + + A+ + D G + + L L + R
Sbjct: 131 QRHMNDQVSYPSMLRRLGEKYNVPEFAAASAIIEAGDIVGGPVAKANGLMKLGAAIRMRS 190
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ E+K A+L PK+ +I L + +++
Sbjct: 191 KLLLERKKANLEPKIASMFVILVLGLGLML 220
>gi|291562875|emb|CBL41691.1| Type II secretory pathway, component PulF [butyrate-producing
bacterium SS3/4]
Length = 346
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 8/144 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++KR+ + + VESG+SI + L + + A ++
Sbjct: 1 MKKRKKLGAERLSEFFRQFSVLVESGLSIPETLEIMQQ--DDTDREFCLACRKLGAFMTE 58
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A E R ++ +I++ + + L E E + ++
Sbjct: 59 GKTVGDAMEETG-RFPEPAIQ-----MIRAAEMSGQLVRTTARLAVHYEKEHRTEGKIRS 112
Query: 292 ASLGPKLTVPMIIFFLPVLILVII 315
A L PK+ V M+IF + + L I+
Sbjct: 113 AVLYPKILVLMMIFLMLFVFLEIL 136
>gi|210629925|ref|ZP_03296172.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
gi|210160742|gb|EEA91713.1| hypothetical protein COLSTE_00055 [Collinsella stercoris DSM 13279]
Length = 254
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 4/134 (2%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+A L + SG+S+ QA++ V G P+ E L A ++ + A +
Sbjct: 84 MPEAFGALAFSLGSGLSLAQAMQYVG---GRSEEPVRTEFLHASALMTCGVSSVDALDEL 140
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + AL S + G S+ L + + + +++ +
Sbjct: 141 VTRLNAPALDLVVLALKVSRKTGASLTGLLSEAAGLVGERIELARNLEVKTAQVRMSARL 200
Query: 303 IIFFLPVLILVIIG 316
+ +PV+++ +
Sbjct: 201 VAG-MPVIMVGFLS 213
>gi|76800734|ref|YP_325742.1| transmembrane protein (type II secretion system proteins TadC)
[Natronomonas pharaonis DSM 2160]
gi|76556599|emb|CAI48170.1| transmembrane protein (homolog 4 to type II secretion system
proteins TadC) [Natronomonas pharaonis DSM 2160]
Length = 615
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 7/194 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + L + V L+GY + P IS + + R D +
Sbjct: 343 AAVVFLPPASALGGLLWWVGEPAVNVALLGYAAYGLPVGAISVRRARLDDAKDREIRDFV 402
Query: 188 DLLLICVESGISIDQALRRVAE-----DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ V G D+A++ VAE + L+ + LT R+ A + F
Sbjct: 403 HAVAGHVSLGKPFDEAVQTVAEEVDFGPLQADVDDLAFRLGLTT-GTRDGGTRREALDRF 461
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + + G+ + L +E S + ++A + V
Sbjct: 462 VERVGTPLSEQTVGLVTGALSVGSDAETTFETLQTEIGSLYHQRKKLRSAMA-VYVAVGW 520
Query: 303 IIFFLPVLILVIIG 316
L V I+V +
Sbjct: 521 TTALLVVGIVVAVN 534
>gi|139438670|ref|ZP_01772154.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
25986]
gi|133775750|gb|EBA39570.1| Hypothetical protein COLAER_01155 [Collinsella aerofaciens ATCC
25986]
Length = 213
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 2/130 (1%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ +D++ + + +G+S D AL + + L E ++ R+
Sbjct: 73 VSEMIDVVRLGLSAGLSFDAALEIFCAN-RRSVLALRLERACMAWQVGVG-TREDELLAA 130
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + + Q+ G + ++L E R+ E++ KL +P
Sbjct: 131 ARDLDVRALETFAITVGQALALGAPLAETLAAQSREIRAAHRAAVEREIERAPIKLLIPT 190
Query: 303 IIFFLPVLIL 312
LP L+L
Sbjct: 191 GTLILPALLL 200
>gi|327400834|ref|YP_004341673.1| Type II secretion system F domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316342|gb|AEA46958.1| Type II secretion system F domain protein [Archaeoglobus veneficus
SNP6]
Length = 635
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 82/236 (34%), Gaps = 10/236 (4%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
K + + L + R +K+ + I+ +++++
Sbjct: 314 KSSLPVPPARTEKRVLIAEEDIFARKVEQKMGTYKVRKFRKILKRIKSSLLHPFEDAIYT 373
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ R I+ + ++ I + + V L P + L ++
Sbjct: 374 IGFR----IVLFYIAVLVILVTFIASRFLSLRELSIVTLSTAA---IPIILFIELRERTV 426
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
I++ P+ L I E+G+SI +AL+ ++ + +S+E+ + + +
Sbjct: 427 RQIEKRIPEIFKELAILNEAGLSIIEALKVLSTI---ELGVISKEINIIRRRIEWGEPVT 483
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A R + + + +++ + D+ + + + +E + +++
Sbjct: 484 KALRLLELRVRSEIIAKVIPISVKALETSPTYKDAFQTVAAFASAEVGLRERIRSS 539
Score = 44.0 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 6/140 (4%)
Query: 150 VGAVILIGYVGFCAPSV----WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ V++ G V + + S + +R++ I P A++++ GI ++
Sbjct: 110 ILWVLISGVVAYKLVEYLILSYPSFISSRRRNEIDIYLPHAVNMMYGMAAGGIGTYDMIK 169
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
VAE LS+E I F + A + + T + + + LI +
Sbjct: 170 SVAEA-KFMFGELSKEFGTIIQLTDVFKEDLLSAMRHVRDTTPSEKLSSFLDDLIFIIKG 228
Query: 265 GTSIGDSLRVLVSETRSERL 284
G ++ L+ E E+
Sbjct: 229 GGNLSAFLKNKSDEFFEEQE 248
>gi|86742973|ref|YP_483373.1| type II secretion system protein [Frankia sp. CcI3]
gi|86569835|gb|ABD13644.1| type II secretion system protein [Frankia sp. CcI3]
Length = 448
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 26/174 (14%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ +P ALDL+ C+ SG +I A R V GG L E+ L+
Sbjct: 275 HNRFLADFPLALDLIAACLRSGETIMSAARAVGAATGG---VLGAELCSVGDALAAGATV 331
Query: 236 QVAFENFYNRTQMD-----------------------CVRNATQALIQSDRYGTSIGDSL 272
A E + VR A AL +++ G + +L
Sbjct: 332 GAACERLVAASHAPRLTDRLPGWARRGRVTPPSRRARMVRAAIMALDRAEMSGAKLAATL 391
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
L R E E+ A G P+ + FLP +L+ + P +L + +
Sbjct: 392 TRLADRARDEAHAESIAAARRAGVLAVAPLGLCFLPAFLLLGVVPMVLGSVPAL 445
>gi|297182320|gb|ADI18488.1| type II secretory pathway, component pulf [uncultured
Verrucomicrobiales bacterium HF4000_13K17]
Length = 417
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 10/156 (6%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
Q+R+ + + L +++G+ + AL + +A++
Sbjct: 69 QRRKKPKLQDLANFTRQLANLLKAGMPLTGALNSMTSLDSEGIP--KSVCAQLLADVREG 126
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
++ F + ++++ S+ + L+ L ER E +K
Sbjct: 127 RTLSMSMGKFPEIFP-----DMYLNMVKAGESSGSMVEVLKRLADHY--ERFAEVRQKII 179
Query: 293 SLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTMK 327
S M + F L + + I P ++I MK
Sbjct: 180 SALVYPMFVMGLGFLLIFVFMSYILPKFMTIFKGMK 215
>gi|254414459|ref|ZP_05028225.1| Bacterial type II secretion system protein F domain [Microcoleus
chthonoplastes PCC 7420]
gi|196178689|gb|EDX73687.1| Bacterial type II secretion system protein F domain [Microcoleus
chthonoplastes PCC 7420]
Length = 406
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 61/163 (37%), Gaps = 12/163 (7%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
F + + L +K S + + V +G++I + L ++E + L
Sbjct: 45 AFSLEDLNLDALQEKMTSVSVKDRAVFSRQFAVMVNAGVAIVRCLGILSEQCA--NPKLK 102
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ + +E+ + A R C +++Q+ G + + L L
Sbjct: 103 KSLTAISSEVQQGTSLSDAM-----REHPACFDQLYVSMVQAGEVGGVLDEVLNRLAKLL 157
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
++ + K+A +T P+++ VL+ + + ++ I
Sbjct: 158 EDMARLQNQIKSA-----MTYPLVVGGFAVLVFLGMTIFLIPI 195
>gi|148272481|ref|YP_001222042.1| putative pilus assembly protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830411|emb|CAN01346.1| conserved membrane protein, putative pilus assembly protein
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 287
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 18/228 (7%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + ++ + L AG ++ S++ L V +V + +L + L
Sbjct: 31 RDRGLTSSVHDHLTHAGL-AQVSVSSFLAVSGLVGLAAGVLVEALLRVDGAALAAAAT-- 87
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
G P + R+ + + WPD +D L+ V +G+ + A+ +A
Sbjct: 88 ----------GLLLPWAVVGARSAARRRAHREVWPDVVDHLVSAVRAGMGLPDAVASLA- 136
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SI 268
L + + VA + ++ + L + G +
Sbjct: 137 --VAGPAVLRPAFRDFASVHRTTGSFAVALDELKDQLADPTADRILETLRMAREVGGTQL 194
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
D LR L R E + +E +A + + P +IL ++
Sbjct: 195 PDVLRGLARFLREEAAIRSEAEARQSWVVNAAKLGVAA-PWIILALLS 241
>gi|172041535|ref|YP_001801249.1| hypothetical protein cur_1856 [Corynebacterium urealyticum DSM
7109]
gi|171852839|emb|CAQ05815.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length = 386
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 27/293 (9%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKS---LRNFVKKLNLKAILVDENIVNKL 102
++ E+ + + S+ L +D + L ++ + + ++IV L
Sbjct: 102 AALRDRGEVGSEGDRDGASTGNGSAELVAQDVEEFCELWELAERTGMSFAPLADSIVADL 161
Query: 103 RAAGFRSEYSLNILLVVRLVVPIIFLI-LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
A + E + + RL ++ + +G + I L + + VG
Sbjct: 162 EAHSAQQEKTAAAMAGARLTEVLLLAMPVGAVGIGQSMGLDPGGILFGSVIGLGLLLVGA 221
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDA------------LDLLLICVESGISIDQALRRVAE 209
+ + A LD+ + + +G+ + +A
Sbjct: 222 MLACTGVLWTEALTAKVLGGVGRRAGPTGQALVVARHLDIFALALAAGLPVAKAWGVAVG 281
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
G + + L A+E + V +Q R GT +
Sbjct: 282 PGEGPAHDVEP-------LLQLGAGPA-AWEPLKSHEHYGPVAR---QALQQTRAGTRLA 330
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + R L + E A + + P+ + FLP +L+ + P ++ +
Sbjct: 331 EGAKAQARRIRQHSLNQVEAGAERVLIAVAAPLTLCFLPAFVLIGLVPLVIGL 383
Score = 40.6 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 28/195 (14%), Positives = 56/195 (28%), Gaps = 26/195 (13%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + + F V + + Q + D D V +G + A+
Sbjct: 2 TLLIVLTLTAVGSMGAFTGYRVGVRIRDGRVQRRQLELFRDLADSCAREVAAGARVADAV 61
Query: 205 RRVAEDIGGQSVP--------LSEEMLLTIAELSFLPNRQVAFENFYN------------ 244
A D G L ++ L A++ A +
Sbjct: 62 ESAAADCEGDEADAEGDTGTRLGGQLALVAAQVRLGALPTAALRDRGEVGSEGDRDGAST 121
Query: 245 -----RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
V + ++R G S +V++ + + + AA G +LT
Sbjct: 122 GNGSAELVAQDVEEFCELWELAERTGMSFAPLADSIVADLEAHSAQQEKTAAAMAGARLT 181
Query: 300 VPMIIFFLPVLILVI 314
+ + +PV + I
Sbjct: 182 EVL-LLAMPVGAVGI 195
>gi|320094936|ref|ZP_08026662.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978135|gb|EFW09752.1| hypothetical protein HMPREF9005_1274 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 165
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 11/154 (7%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
L + R A DL+L + G SI QAL + +G S+ ++ E
Sbjct: 15 RLLARLRSRDGAVDEAIACDLVLAGLRCGASIPQALAALGGAVG------SDGLVRISRE 68
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L A++ + L + G S LR ++TR R+ +A+
Sbjct: 69 LRLGAGWAAAWDPAP-----PGTELLREGLEAAWLQGVSPEAQLRRAAAQTRRHRISDAK 123
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
K A LG L P+ LP +L+ + P ++ +
Sbjct: 124 KAAEELGISLVAPLGALLLPAFVLLGLVPIVIHM 157
>gi|317123681|ref|YP_004097793.1| type II secretion system F domain [Intrasporangium calvum DSM
43043]
gi|315587769|gb|ADU47066.1| Type II secretion system F domain [Intrasporangium calvum DSM
43043]
Length = 211
Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVP----LSEEMLLTIAELSFLPNRQVAFENFYN 244
LL + SG+ L VA+ + P ++ ++ A L + + A+ +
Sbjct: 72 LLALGYRSGLPTWNVLTAVADVLAQPEAPDGSAVTRDLRQVAAALRWGASDDEAWASVGE 131
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
A +A+ + R G G L E R L E AA +G +L P+ +
Sbjct: 132 -----VWTGAGRAVAIAHRAGIPPGPLLLSAADELRKASLERVELAAARVGVQLVAPLGL 186
Query: 305 FFLPVLILVIIGPAILSI 322
LP L + P ++++
Sbjct: 187 VLLPAFCLTTVVPLVMAL 204
>gi|301165488|emb|CBW25059.1| pilus-assembly protein [Bacteriovorax marinus SJ]
Length = 406
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 9/144 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + L I + +G+ I QAL + + + L + + ++ A
Sbjct: 67 AKDLANFTKQLSIMINAGVPILQALEIIFKS--EKQPTLKKSVKNIARDVGEGQTIAEAM 124
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E L+++ G + + L L + +A+ K+A + P +
Sbjct: 125 EK------QKGFNKLYCNLVKAGEAGGILDEILEKLSVHLEKQEKTKAQVKSAMMYPFI- 177
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
V ++ F + ++V + P + ++
Sbjct: 178 VTLVGFGVIWGMMVFVVPQFVGML 201
>gi|313835750|gb|EFS73464.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314928423|gb|EFS92254.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970120|gb|EFT14218.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328906759|gb|EGG26531.1| type II secretion system F domain protein [Propionibacterium sp.
P08]
Length = 147
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ P+ L +L +E+G+ + A+ VAE + G P +E++ + L+
Sbjct: 2 KQRRAAQLPETLLMLSSTMEAGLPLRAAVTTVAESLEG---PCAEDLRRLASALAAGVPD 58
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
A+ + + R+ Q + ++ G I + L ++ + +AEKKA G
Sbjct: 59 SKAWNDLA---AVTVWRDPAQDVSRAVDSGEGISELLSAHAAQLQVAAAEKAEKKARKAG 115
Query: 296 PKLTVPMIIFFLPVLILVIIGPAILSI 322
P+ LP +LV + P I +
Sbjct: 116 VDAIGPLGCCHLPAFLLVGVVPIIAGM 142
>gi|328954942|ref|YP_004372275.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
gi|328455266|gb|AEB06460.1| Type II secretion system F domain protein [Coriobacterium glomerans
PW2]
Length = 221
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 4/131 (3%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFEN 241
+ +D++ + + +G+S D AL + L+ M R+ A
Sbjct: 81 VSEMIDIVRLGLSAGLSFDAALELFCANRATS---LARRMAQASLAWRIGSATRETALAG 137
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + A+ Q+ G + ++L E R+ E E+ KL +P
Sbjct: 138 AATDLGARSLESFAVAVSQALALGAPLTETLAGQSREIRAAHRAEVERDIERAPIKLLIP 197
Query: 302 MIIFFLPVLIL 312
LP L+L
Sbjct: 198 TSALILPALLL 208
>gi|297571777|ref|YP_003697551.1| type II secretion system protein F [Arcanobacterium haemolyticum
DSM 20595]
gi|296932124|gb|ADH92932.1| Type II secretion system F domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 270
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 4/168 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + + + V+ V P + S V++R+ + AWPD L
Sbjct: 31 PVVVSAGWACAGGVASFVLIRSLPIVVCCAVVAGLVPVLRRSARVRRREEVCRDAWPDVL 90
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
D ++ + +G+S+ Q+L V E + E + A +
Sbjct: 91 DDVVASLRAGLSVSQSLAMVGE---RGPELMREPFSRCATMIRAQGRMGPALDELKAEFA 147
Query: 248 MDCVRNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASL 294
+A+ S G + L L + R + E A
Sbjct: 148 DPMADRVLEAMRLSHELGGRDLATMLARLAAVIREDNRARGELLARQS 195
>gi|313899440|ref|ZP_07832950.1| hypothetical protein HMPREF9406_0504 [Clostridium sp. HGF2]
gi|312955728|gb|EFR37386.1| hypothetical protein HMPREF9406_0504 [Clostridium sp. HGF2]
Length = 230
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 69/204 (33%), Gaps = 12/204 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
F++ + + + + + Y G+ P +W+ +R I A
Sbjct: 32 FAFMLFMGLIGVLLAVIKRSSLPVCIVCAVGFTYGGYKLPWLWLRLRHNQRCRQISDAII 91
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++ + + +I A+ L ++ I +++ + + A+ NF +
Sbjct: 92 LWVNTIY-ALIGENNIYNAISLSN---ASAPEILKPDLECFIQQITLDHSDKDAYLNFLS 147
Query: 245 RTQMDCVRNATQALIQSDRYGTS-----IGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++D R+ L + I + L R +R + + T
Sbjct: 148 MYEIDGFRDIMMKLYEYRSLSKDKLKYEIAALTKALSRIERDKRERRYRSELFTAD---T 204
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
+ MI+ +P + + + + +I
Sbjct: 205 LTMIMMSVPCMYMFFVSLILSQLI 228
>gi|47568976|ref|ZP_00239667.1| conserved hypothetical protein protein [Bacillus cereus G9241]
gi|208743461|ref|YP_002267912.1| membrane protein, putative, (pxo1-60) [Bacillus cereus]
gi|301068121|ref|YP_003786892.1| membrane protein [Bacillus anthracis CI]
gi|47554360|gb|EAL12720.1| conserved hypothetical protein protein [Bacillus cereus G9241]
gi|300379211|gb|ADK08114.1| membrane protein, putative [Bacillus cereus biovar anthracis str.
CI]
Length = 310
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 23/213 (10%), Positives = 70/213 (32%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + ++ F + + ++ GF P ++ ++
Sbjct: 77 MYWVYTILSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFFLYRRKKRYYL 127
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 128 VVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMYR 184
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S G + L + + ++L A +++
Sbjct: 185 AFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEKQKLYLARLRSSLSQA 244
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P++I+++ A + +M
Sbjct: 245 QRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|220931443|ref|YP_002508351.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168]
gi|219992753|gb|ACL69356.1| Tfp pilus biogenesis protein PilC [Halothermothrix orenii H 168]
Length = 401
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + +GIS+ +AL + + + L E + ++ + A
Sbjct: 65 LVLFTQQFSVLLNAGISLVEALDIMYDQVE--HPRLKEVVRSIQEDVETGSSLTDALLK- 121
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D ++++ G + L L + + + ++ K+A + P+
Sbjct: 122 ----HPDVFPELYCQMVKAGEAGGVLDQVLEQLSAHYERQDEINSKVKSA-----MYYPV 172
Query: 303 IIFFLPVLILVII----GPAILSIIDTM 326
I+ + V +++ + P +S+ +M
Sbjct: 173 ILLVVAVGVVIFLMTRVVPQFISLFSSM 200
>gi|241760203|ref|ZP_04758299.1| pilin biogenesis protein [Neisseria flavescens SK114]
gi|241319314|gb|EER55779.1| pilin biogenesis protein [Neisseria flavescens SK114]
Length = 413
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +++ + L +++G+ + QA VA G + ++E ++
Sbjct: 56 PLRISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+++ +F + L+ + G + L L +
Sbjct: 114 QVRSDVEQGSALGKSFSKYPKY-----FDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQ 168
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + K A L + + ++ L ++++ + PA + M
Sbjct: 169 AIKKKVKTA-LTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMG 211
>gi|271962852|ref|YP_003337048.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
gi|270506027|gb|ACZ84305.1| hypothetical protein Sros_1307 [Streptosporangium roseum DSM 43021]
Length = 295
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 9/178 (5%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+G I + +P ++ +G+ G + +R + D
Sbjct: 59 AVGAIAGVLVLVVTGWPVMAVGAVLLALGWRGLSGGAAEERT-AMRRLEGLAAWTESLRD 117
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ +I ++R A L + + L A F +
Sbjct: 118 TIAGAAGLEQAIPSSIRAAA-------PMLRPHLRALVDRLHTRMPLPDALRLFADELDD 170
Query: 249 DCVRNATQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
ALI + + G + D L L R E M +A + +V +++
Sbjct: 171 PSADLVVAALILNSKLRGPGLRDVLGALAVSAREELDMRRRVEAERRSTRRSVQIVVG 228
>gi|154151444|ref|YP_001405062.1| type II secretion system protein [Candidatus Methanoregula boonei
6A8]
gi|153999996|gb|ABS56419.1| type II secretion system protein [Methanoregula boonei 6A8]
Length = 224
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 70/192 (36%), Gaps = 4/192 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ +L + V ++++ G + + + S + R+ +I P A++ +
Sbjct: 1 MLFLNQYGVLLGTIFVVVFSLLVFGGITYAIFIAYPSVVAGNRRRNIDATLPYAINYITS 60
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCV 251
+GI+ + R + + S E EL + A + T +
Sbjct: 61 MSTAGITPAEIFRLLGDS--PIYGESSVEARYIARELDIFGRDLIDALRIVSSSTPSLRM 118
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+ Q + S G ++ + R ++ E + +L ++ + + +
Sbjct: 119 KEFLQGAMASISSGGNLTEYFRTKAAQYALENRQTQKLFLDTL-ALISESYVTAMVAGTL 177
Query: 312 LVIIGPAILSII 323
+II +I+S++
Sbjct: 178 FLIILQSIMSVL 189
>gi|10956307|ref|NP_052756.1| hypothetical protein pxo1_60 [Bacillus anthracis]
gi|21392772|ref|NP_652851.1| hypothetical protein BXA0086 [Bacillus anthracis str. A2012]
gi|47566407|ref|YP_016417.2| membrane protein [Bacillus anthracis str. 'Ames Ancestor']
gi|167636781|ref|ZP_02395064.1| membrane protein, putative [Bacillus anthracis str. A0442]
gi|167642108|ref|ZP_02400330.1| membrane protein, putative [Bacillus anthracis str. A0193]
gi|170689827|ref|ZP_02880997.1| membrane protein, putative [Bacillus anthracis str. A0465]
gi|170709478|ref|ZP_02899878.1| membrane protein, putative [Bacillus anthracis str. A0389]
gi|177656380|ref|ZP_02937273.1| membrane protein, putative [Bacillus anthracis str. A0174]
gi|190569518|ref|ZP_03022379.1| membrane protein, putative [Bacillus anthracis Tsiankovskii-I]
gi|229599847|ref|YP_002860776.1| hypothetical protein BAA_A0084 [Bacillus anthracis str. A0248]
gi|254687777|ref|ZP_05151633.1| hypothetical protein BantC_28598 [Bacillus anthracis str.
CNEVA-9066]
gi|254739267|ref|ZP_05196969.1| hypothetical protein BantWNA_29281 [Bacillus anthracis str. Western
North America USA6153]
gi|254745063|ref|ZP_05202740.1| hypothetical protein BantKB_29365 [Bacillus anthracis str. Kruger
B]
gi|254762573|ref|ZP_05214413.1| hypothetical protein BantA9_29198 [Bacillus anthracis str.
Australia 94]
gi|4894276|gb|AAD32364.1| pXO1-60 [Bacillus anthracis]
gi|20520159|gb|AAM26041.1| putative membrane protein [Bacillus anthracis str. A2012]
gi|47552222|gb|AAT28827.2| membrane protein, putative [Bacillus anthracis str. 'Ames
Ancestor']
gi|167509791|gb|EDR85215.1| membrane protein, putative [Bacillus anthracis str. A0193]
gi|167527707|gb|EDR90546.1| membrane protein, putative [Bacillus anthracis str. A0442]
gi|170125439|gb|EDS94366.1| membrane protein, putative [Bacillus anthracis str. A0389]
gi|170666202|gb|EDT16995.1| membrane protein, putative [Bacillus anthracis str. A0465]
gi|172079740|gb|EDT64857.1| membrane protein, putative [Bacillus anthracis str. A0174]
gi|190559297|gb|EDV13321.1| membrane protein, putative [Bacillus anthracis Tsiankovskii-I]
gi|229269466|gb|ACQ51102.1| putative membrane protein [Bacillus anthracis str. A0248]
Length = 310
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + ++ + F G ++ GF
Sbjct: 53 GIRMYMPQSVIQEAQKYEWKLTKSMYWVYTILSGMSIAAVFYFSFGRDPFTLITVLSGFL 112
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ ++ + + + ++ + + L +V + + EE+
Sbjct: 113 VPRFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 169
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF F + + L S G + L + +
Sbjct: 170 EKVSLLLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 229
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 230 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|311743761|ref|ZP_07717567.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
gi|311312891|gb|EFQ82802.1| type II secretion system protein [Aeromicrobium marinum DSM 15272]
Length = 285
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 4/169 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
++ + + + ++ + AP + +R +WPDA
Sbjct: 53 AVVGLCVALGSVVFVAVTAATGVPVIGLVFASMAAAAPVAVLRGRAARRLRDHAASWPDA 112
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L V +G+S+ +A+ +V E L + + + + A + R
Sbjct: 113 VDNLASAVRAGMSLPEAVMQVGE---RGPEVLRADFVAFGRDYRATGRFEEALDLLKIRL 169
Query: 247 QMDCVRNATQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
++L + G +G LR L + R + E ++
Sbjct: 170 ADPVGDRVVESLRLARDVGGGDLGRMLRALSAYLRDDLRTRGELESRQS 218
>gi|288930963|ref|YP_003435023.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288893211|gb|ADC64748.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 635
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 11/201 (5%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ + + +L + + F VI K
Sbjct: 359 RLAVIPAAALIGVLLGVLSHLHHIPGNLEFWTLALTVIGSAVSAVMLRKWI------KED 412
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ P + +L E+G A + AE+ PLS+ + + L +R
Sbjct: 413 EKLSAQLPLYFNRVLSLAEAGKDTTTAFKLAAEEAR---PPLSKYVKVFAEMLDRGISRD 469
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK--AASL 294
AF+ + T +R A + L ++ + L LV E E+ A +
Sbjct: 470 RAFQWLFRITPSTDLRLAARILSKTVDVSGRVTQVLISLVGELMRLNAFRKERDSVAKTY 529
Query: 295 GPKLTVPMIIFFLPVLILVII 315
G + + ++F + + +
Sbjct: 530 GGMMVLAALLFLGIAVAISAM 550
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 28/205 (13%), Positives = 63/205 (30%), Gaps = 13/205 (6%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFC---------APSVWISNL 171
L + +I +LG ++ L + I + +
Sbjct: 108 LTLAVIGFLLGTLFRSHIILSLPISIPIPDWTRPYIYAITAYTSQPFIFTILFVASLKGK 167
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
+ R+ I LL ++GISI +A++ E + +S+E + +
Sbjct: 168 ISSRREDIDFNLHTLYITLLGFAKAGISIMEAVK---ELVTMDLGEISKEFARIYYAVRY 224
Query: 232 L-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A T + + + ++ G +G + + ER + +
Sbjct: 225 GNTTLKAAMLEVAATTPSAKLADLLRGIVGVMEAGGDLGRYMEERIESLEVERKIMYTEY 284
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
L V + + ++V I
Sbjct: 285 LKKLEMIAEVYLTVSLAIPTMVVSI 309
>gi|298370054|ref|ZP_06981370.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
str. F0314]
gi|298281514|gb|EFI23003.1| type IV pilin biogenesis protein PilC [Neisseria sp. oral taxon 014
str. F0314]
Length = 413
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 10/165 (6%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +++ + L +++G+ + QA VA G + +++ ++
Sbjct: 56 PLRVSKVKSTRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTQMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A++ +F + L+ + G + L L E+
Sbjct: 114 QVRADVEQGSALGKSFSKYPKY-----FDRFYCNLVSAGETGGVLEGLLDKLA--VYKEK 166
Query: 284 LMEAEKKAASLGPKLTVPMIIFF-LPVLILVIIGPAILSIIDTMK 327
+KK + M++ L ++++ + PA + +M
Sbjct: 167 TQAIKKKVKTALTYPIAIMVVAVALIFVMMMFVLPAFGEVYSSMG 211
>gi|258514754|ref|YP_003190976.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
771]
gi|257778459|gb|ACV62353.1| hypothetical protein Dtox_1489 [Desulfotomaculum acetoxidans DSM
771]
Length = 289
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/269 (11%), Positives = 93/269 (34%), Gaps = 22/269 (8%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ +K+ +++ S + K + N L+A+G + +
Sbjct: 37 AGRKNKKAAKTLEVWLMSGAVKLSKHIRMDEYKRSRMANILKASGIGMTPEVYSAYAITK 96
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I L ++++ + + + +++++ I+
Sbjct: 97 AGAI----------LLGLIPCLLLLPLLSPVLVILAVLAYFKETRKADERLKEKREQIEG 146
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P + + +++ + + ++ G + E+ + A++ + + A
Sbjct: 147 ELPRFVSTIEQTLKASRDVLAMMENYKKNAG---PAFAGELDVLTADMRS-SSYEAALTR 202
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL--- 298
F R + + + LI R G ++L + ++ L + +A + PK+
Sbjct: 203 FEARLNSPMLSDVVRGLIGVLR-GDDSAVYFQMLAHDFKALELQRLKGQAQKIPPKIRIF 261
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ M++ FL + +I + I+ ++
Sbjct: 262 SFIMLMCFLLTYMAII----AMQILSSLG 286
>gi|261379321|ref|ZP_05983894.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
gi|284797758|gb|EFC53105.1| 3-isopropylmalate dehydrogenase [Neisseria subflava NJ9703]
Length = 413
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +++ + L +++G+ + QA VA G + ++E ++
Sbjct: 56 PLRISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+++ +F + L+ + G + L L +
Sbjct: 114 QVRSDVEQGSALGKSFSKYPKY-----FDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQ 168
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + K A L + + ++ L ++++ + PA + M
Sbjct: 169 AIKKKVKTA-LTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMG 211
>gi|266619395|ref|ZP_06112330.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
DSM 13479]
gi|288869071|gb|EFD01370.1| putative type IV pilus assembly protein PilC [Clostridium hathewayi
DSM 13479]
Length = 415
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 56/172 (32%), Gaps = 17/172 (9%)
Query: 162 CAPSVWISNLVQKRQSSIKRAW-PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
P + R+ + + + + + SGI + QAL ++ + L E
Sbjct: 57 LYPVKLKEERGRVRKRPLSCGLLARFMSEMAVMLNSGIPLAQALNLIS--VRESRKDLKE 114
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ + A E Q ++++ G S+ D+ +
Sbjct: 115 IYGKLYHMILHGMDLSQAME-----MQDGVFPPVLIGMVRAGEAGGSLADAFGKMAEYFE 169
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG----PAILSIIDTMKD 328
E + G + P +F ++++++ P+ + ++M+
Sbjct: 170 KEDETRKKV-----GTAMIYPAFLFLTVAVVVILLFTTVLPSFFELFESMEK 216
>gi|289192729|ref|YP_003458670.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
gi|288939179|gb|ADC69934.1| Type II secretion system F domain protein [Methanocaldococcus sp.
FS406-22]
Length = 559
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 65/211 (30%), Gaps = 11/211 (5%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R L+ ++ +I I+ I F + L + +IL +G+ P +
Sbjct: 8 RIGLKPRDYLLKIVLPAVIASIVLTILGFMLFSGIILYIYLFLPIIILASAIGY--PYIV 65
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + K I + + ++ L+ ++E+ E L +
Sbjct: 66 LDSQKNK----INERLHIFITKFGTLSITDLNRKDLLKILSEEKEELGELAKESEKLYVL 121
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A RT + L + G + + L +
Sbjct: 122 TDKWGRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKEFLIKEQDIVMDDYAAFY 181
Query: 288 EKKAASLGPKLTVPM-----IIFFLPVLILV 313
++ SL + + + FF+ ILV
Sbjct: 182 KRMLYSLDLYKELYVSAMTSVAFFMAFSILV 212
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 22/189 (11%), Positives = 66/189 (34%), Gaps = 4/189 (2%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
++L G + + L ++ I+ +IL ++ + PF +++
Sbjct: 249 DRLWHTGEKPTETDKKLRKWLIISVILTIILLPFLLWAKYVIGLSPFSQIPYMILVALGA 308
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRRVAEDIGGQSVPL 218
A +++ +++ + +PD L L V + G + +L ++ PL
Sbjct: 309 TPLAIGGFVALKEEEKVKRKEFVFPDFLRSLGDSVSAKGGGMVSSLEYLSNH---DFGPL 365
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ ++ L+ + ++ F + ++ + + +G + ++
Sbjct: 366 THDIKKLYKRLALGIDSNKSWRLFGFDSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKN 425
Query: 279 TRSERLMEA 287
R +
Sbjct: 426 FRKIVQLRK 434
>gi|297560195|ref|YP_003679169.1| type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296844643|gb|ADH66663.1| Type II secretion system F domain protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 297
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 6/197 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ LL + A +L + P+V + ++Q + A ++L
Sbjct: 57 LVAAVVGGLLVWFVTGWPVAGVLAAAGCWWGPAVLGPDRGHEKQVAGVEAVAAWTEMLRD 116
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ + QA+ A + P+ E + L Q A F +
Sbjct: 117 LMAGAAGLHQAV---AATVPIAPEPVREPVARLAERLRAGQPTQGALRAFADEVDNPTAD 173
Query: 253 NATQALIQSD-RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF--FLPV 309
AL + R+ T +G L L R + M A+ + + +I+
Sbjct: 174 LVAAALSTAATRHATDLGTLLGSLAEAAREQAAMLVRVAASRARLRTSTRIIVGTTVGMA 233
Query: 310 LILVIIGPAILSIIDTM 326
+L+ P L D
Sbjct: 234 ALLMAFNPGYLEPFDGF 250
>gi|165873432|ref|ZP_02218031.1| membrane protein, putative [Bacillus anthracis str. A0488]
gi|227811506|ref|YP_002811517.1| hypothetical protein BAMEG_A0081 [Bacillus anthracis str. CDC 684]
gi|254756466|ref|ZP_05208495.1| hypothetical protein BantV_28727 [Bacillus anthracis str. Vollum]
gi|164710807|gb|EDR16385.1| membrane protein, putative [Bacillus anthracis str. A0488]
gi|227008037|gb|ACP17779.1| putative membrane protein [Bacillus anthracis str. CDC 684]
Length = 310
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 10/228 (4%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG---AVILIGYVGFC 162
G R +++ + + + ++ + F G ++ GF
Sbjct: 53 GIRMYMPQSVIQEAQKYEWKLTKSMYWVYTILSGMSIAAVFYFSFGRDPFTLITVLSGFL 112
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ ++ + + + ++ + + L +V + + EE+
Sbjct: 113 VPRFFLYRRKKRYYLVVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEI 169
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRS 281
L AF F + + L S G + L + +
Sbjct: 170 EKISLLLEGGTTMYRAFRGFNETFNFRELVFFHEMLEVCSREGGANSVQVLLDIAEDFEK 229
Query: 282 ERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
++L A +++ + +I+ +P++I+++ A + +M
Sbjct: 230 QKLYLARLRSSLSQAQRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 277
>gi|312621919|ref|YP_004023532.1| type ii secretion system f domain [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202386|gb|ADQ45713.1| Type II secretion system F domain [Caldicellulosiruptor
kronotskyensis 2002]
Length = 403
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 8/155 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE G+ + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALTEKAECFPS-----ILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + P + + + I L +++L + P + I +
Sbjct: 167 ALIYPAIVILVAIGVL-IIMLTFVVPTFVGIFSEL 200
>gi|291333379|gb|ADD93084.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C205]
Length = 339
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 13/187 (6%)
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISN-------LVQKRQSSIKRAWPDALDLLLICV 194
Y + VIL+ G P ++R S I++ P A
Sbjct: 112 FAYQVFPPLLKVILVLVGGLIIPYAAFKFNKSGAKREAERRGSMIEKYLPYAASYTAAMS 171
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCVRN 253
+ + + R +A + ++++ + +++ + A + +R +
Sbjct: 172 AANATPSKIFRSLAMN-KDIYGDVADDAAMVYRDVTLLGYDLITAMKMSVDRAASVWLTE 230
Query: 254 ATQALIQSDRYGTSIGDSLRVLVS----ETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
Q ++ + G + E R+ M E A + V + + +
Sbjct: 231 FFQGMVGTLTAGGQLKLYFLNRAEHYMRENRTRLQMFLESIALLAESYIVVAVAMPLFLI 290
Query: 310 LILVIIG 316
++LVI+
Sbjct: 291 VMLVIMF 297
>gi|228912577|ref|ZP_04076239.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL
200]
gi|228847046|gb|EEM92038.1| hypothetical protein bthur0013_66360 [Bacillus thuringiensis IBL
200]
Length = 307
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 69/213 (32%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ + + + + ++ F + + ++ GF P + +
Sbjct: 74 MYWVYTILSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFLLYRRKKCYYL 124
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 125 IVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 181
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S GT+ L + + ++L A +++
Sbjct: 182 AFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQA 241
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P++I+++ A + +M
Sbjct: 242 QRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 274
>gi|187933799|ref|YP_001886614.1| pilus biogenesis protein [Clostridium botulinum B str. Eklund 17B]
gi|187721952|gb|ACD23173.1| bacterial type II secretion system protein F [Clostridium botulinum
B str. Eklund 17B]
Length = 358
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 16/175 (9%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA--------LDLLLICVESGISI 200
+ + I G P + I L+ K+ S+ + + +L I V SG++I
Sbjct: 180 PIFSFIFFVCWGVFIPFISIKRLINKKYVSLLSNFKIFNKFLEYVIVFILSIIVNSGMNI 239
Query: 201 DQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ 260
LR +E + +S+++ ++ A T ++ T A+++
Sbjct: 240 SYGLRYCSESMHFNY--ISDKLNKINEDILKGSTLSEAI------TDINIFSKYTVAVVR 291
Query: 261 SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
SIG++L+ L + K + L P L + + I ++ I+
Sbjct: 292 VREESGSIGEALKELSLILEESLIKTVNKYLSLLQPFLIIFISIVITVFFMIFIL 346
>gi|29826726|ref|NP_821360.1| integral membrane protein [Streptomyces avermitilis MA-4680]
gi|29603822|dbj|BAC67895.1| putative integral membrane protein [Streptomyces avermitilis
MA-4680]
Length = 309
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 4/158 (2%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
L+G P + + + + A + L + G+ ++QA+ +
Sbjct: 77 FVGGALLGVAVVGVPWLISPAQMAQERIGQLEALSEWTQRLAGLLRLGMGLEQAMITSRQ 136
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD-RYGTSI 268
G L+ +++ L A F ALI S G +
Sbjct: 137 ---GAPDELAPQIVNLSDRLRLGWRPDGALRAFAEELNDVTADKVVAALILSVNDRGPGL 193
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+L L R E + +A P+ TV +
Sbjct: 194 AQALEDLAGTVRDEVAKKRAIEADRAKPRTTVRWMTVI 231
>gi|170782447|ref|YP_001710780.1| putative type II secretion protein protein [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157016|emb|CAQ02189.1| putative type II secretion protein protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 274
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 18/228 (7%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
++ + ++ ++L AG + S++ L V +V + +L + L
Sbjct: 18 RSRGLTASVHDRLTHAGL-ARVSVSSFLAVSALVGLAAGVLVEALLRVDGAALAAAAT-- 74
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
G P + R+ + + WPD +D L+ V +G+ + A+ +A
Sbjct: 75 ----------GLLLPWAVVGARSASRRRAHREVWPDVVDHLVSAVRAGMGLPDAVASLAV 124
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SI 268
P E + VA + + + L + G +
Sbjct: 125 AGPVVLRPAFREFASVHRTT---GSFAVALDELKEQLADPTADRILETLRMAREVGGTQL 181
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
D LR L R E + +E +A + + P +IL ++
Sbjct: 182 PDVLRGLARFLRDEAAIRSEAEARQSWVVNAAKLGVAA-PWIILALLS 228
>gi|229182302|ref|ZP_04309577.1| hypothetical protein bcere0005_56110 [Bacillus cereus 172560W]
gi|228601158|gb|EEK58704.1| hypothetical protein bcere0005_56110 [Bacillus cereus 172560W]
Length = 307
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/213 (11%), Positives = 69/213 (32%), Gaps = 16/213 (7%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
+ L + + + ++ F + + ++ GF P + +
Sbjct: 74 MYWLYTILSGMSIAAVFYFSFGRDP---------FTLITVLSGFLVPRFLLYRRKKCYYL 124
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ + + ++ + + L +V + + EE+ L
Sbjct: 125 IVIDRLSIYMKAVANALQISNNAKRVLVQVKPMMHES---IQEEIEKVSLLLEGGTTMHR 181
Query: 238 AFENFYNRTQMDCVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF F + + L S GT+ L + + ++L A +++
Sbjct: 182 AFREFNETFNFRELVFFHEMLEVCSREGGTNSVQVLLDIAEDFEKQKLYLARLRSSLSQA 241
Query: 297 KLTVP---MIIFFLPVLILVIIGPAILSIIDTM 326
+ +I+ +P++I+++ A + +M
Sbjct: 242 QRAFVQNCLIVIAMPIVIMLMSKEAYGFLAGSM 274
>gi|157502154|ref|YP_001485253.1| hypothetical protein pBMB67_067 [Bacillus thuringiensis]
gi|87133459|gb|ABD24369.1| hypothetical membrane protein [Bacillus thuringiensis]
Length = 277
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 84/233 (36%), Gaps = 10/233 (4%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E + KL A + + L+ +LV+ I + +I+ + + + + +
Sbjct: 53 EELNIKLDKANL--KITPIEFLLKKLVISIFVFLFALIYAWIFPQYKLIILTVGLIIS-- 108
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ F +V ++++++ R+ ++ P+ + L + A I S
Sbjct: 109 --ALVFFYENVRLNSIIKSRELRLELELPELMIPLGFMLSKF----SAFEATKRSIEYAS 162
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ +A+L P + F + AL QS + +
Sbjct: 163 DSIKPYAEELVAKLELEPGSHEPYIEFAKALNIPSAYQFMVALEQSMKMDEEKSKEIINA 222
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
E + E+ K + P L IIF ++++I+G + +SI D +
Sbjct: 223 QIEVMQKLQSESHDKLVKMRPGLVSKYIIFAYLGMVILIMGISFVSIFDKFVN 275
>gi|163841486|ref|YP_001625891.1| type II secretion system protein [Renibacterium salmoninarum ATCC
33209]
gi|162954962|gb|ABY24477.1| type II secretion system protein [Renibacterium salmoninarum ATCC
33209]
Length = 184
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G S+ AL R A+ S+ S E+ L+ + A+ + + + ++
Sbjct: 58 GASLSTALARQAQVC---SMEFSTELATVSTALAMGMDWSAAWAHVPVKARDGPLQQLEL 114
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
AL + G LR R E +++AA L KL +PM + LP I + +
Sbjct: 115 ALKFTASTGAPSSALLRAEARRIRRAAHRELQQRAAVLSVKLVLPMGLCALPAFICLGVV 174
Query: 317 PAILSII 323
P +L+++
Sbjct: 175 PVLLALL 181
>gi|320531924|ref|ZP_08032831.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon
171 str. F0337]
gi|320135860|gb|EFW27901.1| hypothetical protein HMPREF9057_00698 [Actinomyces sp. oral taxon
171 str. F0337]
Length = 215
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/201 (15%), Positives = 64/201 (31%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+ L ++ + + P L + + + + +LV +R A D
Sbjct: 12 LLACLPVVGLGLGMLVGADPASLLLDGGVGSAVGALGIVLMAVGHLVTRRLIRAATADGD 71
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A+D L+ + ++ E + L + A++ +
Sbjct: 72 AVDEALVLDLAAAALSAGASVPGVLTALGEALEEEGAGVVGRALLLGAPWEEAWQAPDDE 131
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L G S L + R+ R E+ A L +L +P+
Sbjct: 132 QWRAQRSRLESCLRPGWEDGASPSALLAATAASLRAGRHARDEEAAERLAVRLVLPLGAC 191
Query: 306 FLPVLILVIIGPAILSIIDTM 326
LP +++ I P + S+ +M
Sbjct: 192 HLPAFVILGIAPVVASVGMSM 212
>gi|319639058|ref|ZP_07993815.1| PilG protein [Neisseria mucosa C102]
gi|317399636|gb|EFV80300.1| PilG protein [Neisseria mucosa C102]
Length = 413
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +++ + L +++G+ + QA VA G + ++E ++
Sbjct: 56 PLRISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+++ +F + L+ + G + L L +
Sbjct: 114 QVRSDVEQGSALGKSFSKYPKY-----FDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQ 168
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + K A L + + ++ L ++++ + PA + M
Sbjct: 169 AIKKKVKTA-LTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMG 211
>gi|308069310|ref|YP_003870915.1| hypothetical protein PPE_02548 [Paenibacillus polymyxa E681]
gi|305858589|gb|ADM70377.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 694
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 27/302 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L + + F+L+Y V+ R + +E + + + + + +L
Sbjct: 7 LLWILLISGGGFALLYIVLWWLRKRSSHAVRRGRIYSVQEGRKGKAVLQRELQALLHKLY 66
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T K ++ +L +++ + + + + I G
Sbjct: 67 TLCMKV---------PFLSGYITSVRKRLA-----GQHAYDEYKLRLQTMKMTLFIWGAF 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G ++ P + IL G S+ + + + + + + +
Sbjct: 113 ACSGVVLVMMKP---GIEFAILAVLCGVVINSLILDMAISRMEKRLLAQMIELFANVRHY 169
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++A+ A+ ++ + + + ++ + A E +Y ++
Sbjct: 170 YHQHGMVEEAISEAADLAEAEAGRHARLIHEALTDV----DPHEALERYYESAPNRFLKA 225
Query: 254 ATQALIQSDRYGTSIGD----SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+G I + L+ L S R +L + L L +I PV
Sbjct: 226 FAGISYMVMEFGDRIEEGGSIYLKGLGSLAREIQLELLRR--NKLDYLLKSLNVIALAPV 283
Query: 310 LI 311
Sbjct: 284 FF 285
Score = 43.6 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 8/180 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRRVA 208
V +++GYV + P + + + R+ ++ ++ I +S+++ L +
Sbjct: 510 VLISLIVGYVAYQMPMLLLYLQRKMRRLDMRHEVYQFQTVISILRVMERMSVEEILEWLN 569
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
PL + + L + + A + + + S T I
Sbjct: 570 RFSVIFKRPLQKCL------LHYEHGPEAALDLLKEEAPLPEFQRLVDKFHLSLGKIT-I 622
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++ L S ++ + K +I F P+ L+ + I I +
Sbjct: 623 REAFDDLESHMSYYFEQRKQEYEKIIDSKAIWGRMIGFAPMYGLIFLYLVIPLIGMSFVQ 682
>gi|220930143|ref|YP_002507052.1| hypothetical protein Ccel_2774 [Clostridium cellulolyticum H10]
gi|220000471|gb|ACL77072.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
Length = 290
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 34/314 (10%), Positives = 100/314 (31%), Gaps = 27/314 (8%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ I + L + + + + K + + +K S++
Sbjct: 1 MIILLILFTALLTIGLFLIFA---------DILKLPTMKAAKAMLNTGKKSKRVSQIIET 51
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
+ + K+ + N L+AA + + + ++ + +
Sbjct: 52 YLMTWAVKLSKIIYMDEYRKSRMSNVLKAADISMTPEVYTAYAIVKAGAALMGVIPCLLV 111
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
F +++ + + ++ ++ I+ P + ++
Sbjct: 112 FPLFSS----------VFVILAVLIYFKEFKKADEKLKFKREQIESELPRFAATIEQSLK 161
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
S + L ++ G V E+ + A++ + A F R + +
Sbjct: 162 SNRDVLAMLESYKKNAG---VAFRRELDILTADMRS-SGYEAALTRFEARMNSSRLSDVV 217
Query: 256 QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLIL 312
+ L+ R G ++L + ++ L + +A + PK+ + M++ F+ ++
Sbjct: 218 RGLVGVLR-GDDGTVYFQMLGHDFKTLELHRLKGEAKKIPPKIRIFSFVMLMCFMFTYLV 276
Query: 313 VIIGPAILSIIDTM 326
+I + S+
Sbjct: 277 IIAYEILKSLGGMF 290
>gi|167006299|ref|YP_001661522.1| integral membrane protein [Streptomyces sp. HK1]
gi|166162381|gb|ABY83502.1| integral membrane protein [Streptomyces sp. HK1]
Length = 294
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 32/283 (11%), Positives = 92/283 (32%), Gaps = 5/283 (1%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R ++ + + + L + S + +++ + + + +
Sbjct: 16 RAAMPVRRDLAAALDRLDVSKAGAGTPLLPSAAPDSTGSLAERVGKRILGEAGSRITIPA 75
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE-YPFQLRVGAVILIGYVGFC 162
S L R + + L+L + PF L + + + +
Sbjct: 76 KDLNLLRISPAEHLGKRFLFALYGLLLPQLLQALLALAGSPLPFALPALVSLGMAVLFWF 135
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ + ++ A LD + + + QAL + AE G ++
Sbjct: 136 WPVKEVARDAAGVRLIVRHAAASYLDRVALARIANSGAAQALTQTAEVGDGFIFVRMRQI 195
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
A + + + + L + G ++ +L+ + R
Sbjct: 196 FHEADL--AGVTVWDALKQLGDELDIPELTRPADTLALAGD-GAAVYTTLQAQARQLRIA 252
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L +A+ +A + + +P+ + +++ ++ P ++I+ +
Sbjct: 253 LLSDAKAEANAASAAMILPVTAGVI-LMLTFVMIPITITILGS 294
>gi|33593508|ref|NP_881152.1| hypothetical protein BP2525 [Bordetella pertussis Tohama I]
gi|33572864|emb|CAE42798.1| putative membrane protein [Bordetella pertussis Tohama I]
gi|332382916|gb|AEE67763.1| hypothetical protein BPTD_2483 [Bordetella pertussis CS]
Length = 281
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G I ALR++ E PL++E L + E + A R +
Sbjct: 117 MACALRAGAGIAAALRQLVEHGE---APLAQEFGLLLREQRMGVSFDAALARLARRASFE 173
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ AL + G ++ ++L + + ++ +A ++ I+ LP
Sbjct: 174 SMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQA-WIVGALPP 232
Query: 310 LILVIIG 316
+++ ++G
Sbjct: 233 VLMGVLG 239
>gi|33596529|ref|NP_884172.1| hypothetical protein BPP1911 [Bordetella parapertussis 12822]
gi|33566298|emb|CAE37211.1| putative membrane protein [Bordetella parapertussis]
Length = 281
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +G I ALR++ E PL++E L + E + A R +
Sbjct: 117 MACALRAGAGIAAALRQLVEHGE---APLAQEFGLLLREQRMGVSFDAALARLARRASFE 173
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ AL + G ++ ++L + + ++ +A ++ I+ LP
Sbjct: 174 SMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQA-WIVGALPP 232
Query: 310 LILVIIG 316
+++ ++G
Sbjct: 233 VLMGVLG 239
>gi|317122037|ref|YP_004102040.1| type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
gi|315592017|gb|ADU51313.1| Type II secretion system F domain [Thermaerobacter marianensis DSM
12885]
Length = 300
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 33 IPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
L G +R + +
Sbjct: 19 WWVLHRGAT------------PGPVGVRWLRAGADGQGLVRLPRPPLVEWIDRWPWPARP 66
Query: 93 LVDENIVNKLRAAGFRSEYSLNILLVVR--LVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
D +++ LR AG+ + L V L + + +
Sbjct: 67 PADMDLILLLRRAGWHRVAGDDGLRWVCRALGLASWGGAAAGGCLALAAGIAGGWSPAWW 126
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
G + ++R + ++ P L+ + + G+++ QA+ +
Sbjct: 127 LLPAAGYLAGRRGFLAGLEAAGRRRAARVRDGLPGWLEDIALAARGGLNLRQAVEVANDV 186
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD 270
G PL ++ A + + V A + L++++ G +
Sbjct: 187 GEG---PLIDDAREAFARVRAGQPLRQPLLELARLYPDPEVTVALRTLVEAETRGLPLAQ 243
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+L V R+ ++ A SL LTV +
Sbjct: 244 TLEEQVRLMRALAARRLQRHADSLPFWLTVITM 276
>gi|227831596|ref|YP_002833376.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|284999148|ref|YP_003420916.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5]
gi|227458044|gb|ACP36731.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|284447044|gb|ADB88546.1| type II secretion system protein [Sulfolobus islandicus L.D.8.5]
Length = 658
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFIFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQF--PLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|222529861|ref|YP_002573743.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
gi|222456708|gb|ACM60970.1| type II secretion system protein [Caldicellulosiruptor bescii DSM
6725]
Length = 403
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 51/155 (32%), Gaps = 8/155 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE + + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKDRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALAEKAECFPS-----ILVNMIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + P + + + I L +++L + P + I +
Sbjct: 167 ALIYPAIVILVAIGVL-IIMLTFVVPTFVGIFSEL 200
>gi|307595736|ref|YP_003902053.1| type II secretion system F domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550937|gb|ADN51002.1| Type II secretion system F domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 620
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 28/217 (12%), Positives = 71/217 (32%), Gaps = 7/217 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIF-----GYDKLLEYPFQLRVGAVILIGYVGFC 162
++Y L V ++ +L + +F + P L V +
Sbjct: 313 YTDYRPYKWAGASLTVAVVLGVLEYVMLFHRDLSNRIYIRGLPIPLDFTIVFGLTLALSF 372
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P+ S V + I R + + L + +SG + ++ + + + +
Sbjct: 373 VPTAIYSMRVVSERWEIDREYAEFLRDVTELRKSGFTPEKTFETL--KYTRRYGAFDKYL 430
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ ++ + + + + + T L ++ G + L +L S S
Sbjct: 431 DTMVRQIRYGVPIREVLSSIMPKLHSYYSKVFTFLLTETIDLGGASPQVLDMLASFASSI 490
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
++ +A + + L V ++V+I +
Sbjct: 491 VSVQENMRARLRPLRYVPYIGAVILIVTLVVLIFSVV 527
>gi|327310806|ref|YP_004337703.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
gi|326947285|gb|AEA12391.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
Length = 232
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 66/167 (39%), Gaps = 3/167 (1%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
++ A ++ +L+ R++ + +P L +LL + +G+ + +A+ R+AE
Sbjct: 20 MTLLAAVPPASAAMVLYPLHLISARRTHFENNFPYTLGVLLPLLTAGVPLGRAVARLAEV 79
Query: 211 IGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ ++ E+ L + ++ + A + R R L +S R +
Sbjct: 80 EDDKY--IARELSLVVRDMVVMGSSPIDALVHSAERVPSQNYRETVSVLARSSRITERLD 137
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L + ++ M A S+ + +I L ++L II
Sbjct: 138 AVLMARLDWMLRQKQMRAASLVRSIAVLFEIYVIAAQLLPILLFIIA 184
>gi|229580548|ref|YP_002838948.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
gi|229583406|ref|YP_002841805.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
gi|228011264|gb|ACP47026.1| type II secretion system protein [Sulfolobus islandicus Y.G.57.14]
gi|228014122|gb|ACP49883.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
Length = 658
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 3/191 (1%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
FLI ++ I L ++L ++ P + ++ + SI+ P
Sbjct: 151 FLISLLLVIPISLALSIILLSPLPFLLLLFPFIFIFYPEQKYKSRAREVRDSIQDEIPFF 210
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNR 245
+ L+ I SG +I + +R++ + + +E LL I ++ F + A E+
Sbjct: 211 VTLITIINASGTTIYEGMRKIVQF--PLFKAMKKEALLIIRDIDFFGKSPLDALEHRARL 268
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R G I L E + + + +I+F
Sbjct: 269 TFNRDYSWFLAGYTSIIRSGGDIEAYLFQKAREFLNWLQFRWRFYSERTSFLGELIVILF 328
Query: 306 FLPVLILVIIG 316
+ + L+++
Sbjct: 329 LIFPMFLIVLA 339
>gi|327401349|ref|YP_004342188.1| Type II secretion system F domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316857|gb|AEA47473.1| Type II secretion system F domain protein [Archaeoglobus veneficus
SNP6]
Length = 568
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 20/210 (9%), Positives = 66/210 (31%), Gaps = 9/210 (4%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ + + + +I +I +++ + L+ + + + + P +
Sbjct: 14 ARDYFVKFAAPLVVISIISSLLFYYLLGPLVGNMSFIFLLIPLFGILLALLYPKIV---- 69
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS- 230
K++ I + + + + + + ++AE + L+ + + +
Sbjct: 70 ADKKRIEIDQNLHLFITHIGVLATAEVDRVALFEKIAE--KKEFEELANQARKIVKLVRE 127
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ + A + R R+ + + G + + L +E
Sbjct: 128 WGLSLPEACKFQAKRCPSKIFRDFLERFAYNIDAGQPVEEFLMAEQDVLMTEFETMYFNA 187
Query: 291 AASLGPK--LTVPMIIFFLPVLILVIIGPA 318
+ L + M++ ++ I PA
Sbjct: 188 LKDVDIFKDLFLSMVLSIAFAVVFATILPA 217
>gi|167746591|ref|ZP_02418718.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
gi|167653551|gb|EDR97680.1| hypothetical protein ANACAC_01301 [Anaerostipes caccae DSM 14662]
Length = 401
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 15/190 (7%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGY-VGFCAPS-VWISNLVQKRQSSIKRAWP-----D 185
+ +PF L + A ++ G + P W + ++ R I +
Sbjct: 207 LLGLSGGIRKYWPFILLILAAVIFGIRLILRIPKVRWKKDQLKLRLPVIGKLLRKIYTAR 266
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L SGI I QA++ + +G + + E+ + + + V+
Sbjct: 267 FARTLCSLYSSGIPIIQAMQIGSSTVGNRY--IEEQFGQAVDSIRRGESLSVSL------ 318
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++D + + IQ S+ + L + E E+ L P L + M +
Sbjct: 319 MEIDGFQKKLSSAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLEPVLIILMAVI 378
Query: 306 FLPVLILVII 315
V++ VI+
Sbjct: 379 IGFVVVAVIL 388
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 59/156 (37%), Gaps = 7/156 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ ++ D L +++G+S+ ++L +A +IG +S E + +
Sbjct: 49 KLKSKRKMKASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTD-KETYQNLLNSIR 107
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A + + ++++S ++ + + E + + +
Sbjct: 108 QGIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVR 162
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + P + +++ + + IL + P I DTM
Sbjct: 163 NAMIYPIVLSVLLVGVI-IFILSYLVPQFQDIFDTM 197
>gi|307328262|ref|ZP_07607440.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886096|gb|EFN17104.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 308
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 55/214 (25%), Gaps = 16/214 (7%)
Query: 73 RTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
R R+ + +R + + A + E + + +
Sbjct: 30 RDRELRRVRLLFASGGPVEPAGPDPVRRLSETAAWLRERWRVGYGGRMGRELLCLPVGCV 89
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I + +GAV+ VG S ++ + D ++
Sbjct: 90 IALL------GASVLPLLGAVVATPVVG----RWLRSRRHERDRVRRAAGVIDLCAVVAG 139
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G +AL + L E L A F A + +
Sbjct: 140 ELRAGRHPGEAL------LAVDPGHLRERWGLVTAAARFGGEVPDALRRVARLPGAEGLT 193
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ G + L + + R+ER
Sbjct: 194 GVAACWQVAVDEGAGLAAGLDRVAAALRAERDQR 227
>gi|317471422|ref|ZP_07930774.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
gi|316901037|gb|EFV22999.1| type II secretion system protein [Anaerostipes sp. 3_2_56FAA]
Length = 401
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 66/200 (33%), Gaps = 16/200 (8%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI---- 179
+ + +I + + +Y + + +I + + + + +
Sbjct: 197 MVSLPLPTVILLGLSGGIRKYWPFILLILAAVIFGIRLILRIPKVRWKKDQLKLRLPVIG 256
Query: 180 ----KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
K L SGI I QA++ + +G + + E+ + + +
Sbjct: 257 KLLRKIYTARFARTLCSLYSSGIPIIQAMQIGSSTVGNRY--IEEQFGQAVDSIRRGESL 314
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
V+ ++D + + IQ S+ + L + E E+ L
Sbjct: 315 SVSL------MEIDGFQKKLSSAIQVGEETGSLDEMLDSIAESLEFEAERALERLVTLLE 368
Query: 296 PKLTVPMIIFFLPVLILVII 315
P L + M + V++ VI+
Sbjct: 369 PVLIILMAVIIGFVVVAVIL 388
Score = 46.7 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 59/156 (37%), Gaps = 7/156 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
++ ++ D L +++G+S+ ++L +A +IG +S E + +
Sbjct: 49 KLKSKRKMKASVLADFCRQLGTLLKAGVSLVRSLNIIANEIGVRSTD-KETYQNLLNSIR 107
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A + + ++++S ++ + + E + + +
Sbjct: 108 QGIPLSEAMDEQGRTFPV-----LLVSMMRSAEANGNLDQTSLRMAEHYEKENRLNGKVR 162
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + P + +++ + + IL + P I DTM
Sbjct: 163 NAMIYPIVLSVLLVGVI-IFILSYLVPQFQDIFDTM 197
>gi|15920738|ref|NP_376407.1| hypothetical protein ST0521 [Sulfolobus tokodaii str. 7]
gi|15621521|dbj|BAB65516.1| 634aa long hypothetical protein [Sulfolobus tokodaii str. 7]
Length = 634
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 29/243 (11%), Positives = 84/243 (34%), Gaps = 13/243 (5%)
Query: 92 ILVDENIVNKLRAAGFRSEYSLNI-----LLVVRLVVPIIFLILGIIWI----FGYDKLL 142
+ +++ KL+ AG + + L++ +++ ++ L G I++
Sbjct: 40 EPLAKSLDKKLKQAGLSDDPRIYASRLFFFLILGIIIGVMLLFAGFIFLREFELTKLSKF 99
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQ 202
+ + ++I V + +S V+ R+ ++ L L+ + SG+S
Sbjct: 100 AVGGIMFILFGVIIPVVTYLVLISNVSQKVESRRIGVEAETLAFSALFLVFLRSGLSPRL 159
Query: 203 ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD 262
+++ S + + + A + + I +
Sbjct: 160 LFENLSKTKAFNY-MNSIAKYIVKRINFLGESVEKAIDESTKIVPSKLYNDLMVTYITAI 218
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP---MIIFFLPVLILVIIGPAI 319
R G + ++++ + + ++A K A +L + F+ +++I+
Sbjct: 219 RTGAPVFETMQSKIKDILKNMELQASKAADNLSGVGEGYVTWLASGFISFFLILILEAVF 278
Query: 320 LSI 322
+
Sbjct: 279 PQL 281
Score = 39.0 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 56/179 (31%), Gaps = 3/179 (1%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + + + + IG + P I+ S L +
Sbjct: 361 YMLLGLFTLSGNLNYIPATVIGLTIGLILSLIPPYIIAKRELSEGSGYDIYVARFLRAIG 420
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G+S + ++ + + L + A ++ + AF +
Sbjct: 421 EGSRAGLSPEAVIKNLKDSKEL--GKLQNILRRVYAYINLGIPIKDAFRKASDIIIDFST 478
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ A +L G+ +S+ L + ++ + E A + L +P + L ++
Sbjct: 479 KIAFTSLADMIEIGSLTPESVETLADQLDAQIRIRREYYA-KIKILLYMPYVGSILALI 536
>gi|14325280|dbj|BAB60184.1| TVG1068265 [Thermoplasma volcanium GSS1]
Length = 279
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 5/222 (2%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + ++L + + E + L + ++V IF IL F L L
Sbjct: 23 DKLQDQLIKS--QIELNAVSYLTLSIIVTFIFFILFAATSIFTYYFDRRYFFLVSAVFFL 80
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + S + + + D L + SGI +D+ LR ++
Sbjct: 81 LAALVLYYSSSYPEIRQKWIARQVSLRITDFLAITYSLSLSGIPVDRILRDISNM--DSL 138
Query: 216 VPLSEEMLLTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
+++E + + + A E T D + L S T I R
Sbjct: 139 GEIAKESKRIVVMMDRLGYDFLTALEKAEKITASDDLSRIWAGLRLSILLDTDIVAYFRD 198
Query: 275 LVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ + +++ SLG + + L++ + G
Sbjct: 199 RIDYYSRVQENKSKLSLDSLGLASESFVALVIAFPLLIFMTG 240
>gi|302872319|ref|YP_003840955.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
OB47]
gi|302575178|gb|ADL42969.1| Type II secretion system F domain [Caldicellulosiruptor obsidiansis
OB47]
Length = 403
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 8/155 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE G+ + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALAEKAECFPT-----ILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + P + + + I L +++L + P + I +
Sbjct: 167 ALIYPAIVILVAIGVL-IIMLTFVVPTFVGIFSEL 200
>gi|323702301|ref|ZP_08113967.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
gi|323532791|gb|EGB22664.1| Type II secretion system F domain [Desulfotomaculum nigrificans DSM
574]
Length = 409
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 8/152 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + + +GI I QAL +A +S L E + + +L
Sbjct: 62 RKKVKIKELAVFCRQFATIIAAGIPILQALNILAR--QAESRRLRETITGVVEQLESGRT 119
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + + D N ++I++ G + +L L E + + K+A
Sbjct: 120 LAESLKRYR-----DVFPNIFISMIEAGEVGGVLDKALTRLADHFEKEHDIREKIKSAMT 174
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
P L + + I + L+ ++ P + +++ M
Sbjct: 175 YPVLIICLAICAVTALLTFVL-PKFIQMLNDM 205
>gi|284162413|ref|YP_003401036.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
gi|284012410|gb|ADB58363.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
Length = 628
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 78/189 (41%), Gaps = 4/189 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + L LR+ +L+ F P + + + ++ + PD
Sbjct: 370 VLFHVTLASIVVFLISLRYLRLEHTLLLAISAFVIPLIILVEIKERVMRKTEERIPDVFS 429
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
L + E+G+++ + LR +++ + L+ E+ + E+ + AF R +
Sbjct: 430 ELAMLNEAGLTVLEGLRVLSQ---TEMGLLTREIAVMRREIEWGVLIPRAFIRLGIRVKS 486
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM-IIFFL 307
D + ++++ +I D+ V+ +E + ++++L + + M I+ FL
Sbjct: 487 DILSKIVPVVVKALETAPTIKDAFNVVARYADTEVAFKKRMRSSTLLYVIIIYMCIVVFL 546
Query: 308 PVLILVIIG 316
++I
Sbjct: 547 TTTYMIITS 555
Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 30/233 (12%)
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
++ K + LK ++ L +A R ++ LL + II
Sbjct: 2 RETVKVYVPKFFIRRCTRRVLKNREKYRDLEKALVSA--RLPLNVQELLAIASFYSIISF 59
Query: 129 ILGIIWIFGYDKLLEYPFQLRVG----------------------AVILIGYVGFCAPSV 166
+G++ L + I+ G + + S
Sbjct: 60 FIGLMLGMIIVLTTSPTLLLYIASYTPFYNYVSENYYLIRKVYPAIAIIFGLIAYKLTSY 119
Query: 167 ----WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
+ L ++R++ I+ P A+ ++ GI I +R VAE LS E
Sbjct: 120 SILSYPFFLAKRRRNEIELYLPHAISMMYSMATGGIPIHNMIRTVAES-KHIFGELSREF 178
Query: 223 LLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
++ + + F N + T + + +I G + + LR
Sbjct: 179 MIIVEMVDVFKRNIYDGMRFVRDTTPSPQLSSFLDNMIFILEGGGRLSEFLRR 231
>gi|169838373|ref|ZP_02871561.1| type IV pilus assembly protein [candidate division TM7 single-cell
isolate TM7a]
Length = 245
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ + L + +G+ + ++L + E ++ + + ++ +
Sbjct: 61 RNVKQDELSIFTRQLSTMINAGVPLTRSLNSLQEH--TENPVFRDTLDSVKGDVESGVSL 118
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK-AASL 294
A + ++++ + + L L + + + K A +
Sbjct: 119 ADALGKHPK-----VFSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIKSAMTY 173
Query: 295 GPKLTVPMIIFFLPVLILVI 314
L V ++ F ++I VI
Sbjct: 174 PVVLVVISVLAFFGLMIFVI 193
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 22/126 (17%)
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
LS ++ + + T+ R+ ++ G S+ D+L
Sbjct: 67 ELSIFTRQLSTMINAGVPLTRSLNSLQEHTENPVFRDTLDSVKGDVESGVSLADALGKHP 126
Query: 277 SETRSE-------------------RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
RL ++K+A++ K+ M PV+++VI
Sbjct: 127 KVFSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIKSAMTY---PVVLVVISVL 183
Query: 318 AILSII 323
A ++
Sbjct: 184 AFFGLM 189
>gi|329930823|ref|ZP_08284222.1| conserved domain protein [Paenibacillus sp. HGF5]
gi|328934525|gb|EGG31030.1| conserved domain protein [Paenibacillus sp. HGF5]
Length = 690
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 47/179 (26%), Gaps = 6/179 (3%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ ++ G G+ AP + + R ++ ++ I + +
Sbjct: 507 LLLSLMTGIAGYGAPLWLLYFHRKVRNMEMRHEVYQFQTVISILRGMERITVEVILEWLN 566
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ ++ A + + LI + I
Sbjct: 567 RFAVIFKV---PIQKSLLHYEHGAQL--ALLELKEDVWLPEFQRLVDKLILAVDK-VPIK 620
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
D L E ++ A + K +I F P+ L+ + I I +
Sbjct: 621 DVFDDLDGEMIFSFEQRKQEYEAMIDTKAAWARMIGFTPMYALIFMYLVIPLIGMSFSQ 679
>gi|254478244|ref|ZP_05091625.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
gi|214035840|gb|EEB76533.1| Bacterial type II secretion system protein F domain
[Carboxydibrachium pacificum DSM 12653]
Length = 249
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 27/205 (13%), Positives = 75/205 (36%), Gaps = 4/205 (1%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ LILG + + + + +V + + F ++ +
Sbjct: 46 LFSFAALILGGLLVLTVIGAVNGANVFALLSVFIGSAIMFYQYWRRPIESYKE-SFYKEE 104
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P AL++ + +E G++ + + + G L E + + + A +
Sbjct: 105 ELPAALEIFISGLEVGMTAENIIGYIVRTRKGVVRDLLYE---AQVRIDTGSSLKDALLS 161
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+++ D + +A+ + ++L L+ E + + K+A +L L P
Sbjct: 162 AADKSLNDHFKRFAKAVTGEYESVKDMRENLEELLEEVEEKNYNQKIKRAGTLDNSLFFP 221
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+ + + ++++ P ++S+
Sbjct: 222 IFLGYFVPILIMFALPFVISLRSFF 246
>gi|261406230|ref|YP_003242471.1| hypothetical protein GYMC10_2386 [Paenibacillus sp. Y412MC10]
gi|261282693|gb|ACX64664.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
Length = 690
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ + G G+ AP + + R ++ ++ I + +
Sbjct: 507 LLLSFMAGIAGYGAPLWLLYFHRKVRNMEMRHEVYQFQTVISILRGMERITVEVILEWLN 566
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ ++ A + + LI + I
Sbjct: 567 RFAVIFKV---PIQKSLLHYEHGAQL--ALLELKEDVWLPEFQRLVDKLILAVDK-VPIK 620
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
D L E ++ A + K +I F P+ L+ + I I +
Sbjct: 621 DVFDDLDGEMIFSFEQRKQEYEAMIDTKAAWARMIGFTPMYALIFMYLVIPLIGMSFSQ 679
>gi|332710092|ref|ZP_08430045.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
gi|332351050|gb|EGJ30637.1| type II secretory pathway, component PulF [Lyngbya majuscula 3L]
Length = 405
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
V +G++I + L + E + L + ++ AE+ N A R
Sbjct: 70 FSRQFAAMVNAGVAIVRCLGVLGEQC--SNPKLKKALMNISAEVQQGTNLSDAM-----R 122
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
DC N +++Q+ G + + L L ++ + K+A P + + +
Sbjct: 123 KHPDCFDNLYVSMVQAGEVGGVLDEVLNRLAKLLEDMNRLQNQIKSAMAYPSVVGFLALL 182
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ + +I P I +
Sbjct: 183 VFLAMTMFLI-PIFAGIFQDLG 203
>gi|255066086|ref|ZP_05317941.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
gi|255049631|gb|EET45095.1| 3-isopropylmalate dehydrogenase [Neisseria sicca ATCC 29256]
Length = 413
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P K++ + L +++G+ + QA VA G + ++E ++
Sbjct: 56 PLRISKVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A++ +F + LI + G + L L +
Sbjct: 114 QVRADVEQGSALGKSFAKYPKY-----FDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQ 168
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + K A L +++ ++ L +++ + P + M
Sbjct: 169 AIKKKVKTA-LTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMG 211
>gi|13541844|ref|NP_111532.1| hypothetical protein TVN1013 [Thermoplasma volcanium GSS1]
Length = 282
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 3/205 (1%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + ++V IF IL F L L+ + S +
Sbjct: 41 AVSYLTLSIIVTFIFFILFAATSIFTYYFDRRYFFLVSAVFFLLAALVLYYSSSYPEIRQ 100
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SF 231
+ + D L + SGI +D+ LR ++ +++E + +
Sbjct: 101 KWIARQVSLRITDFLAITYSLSLSGIPVDRILRDISNM--DSLGEIAKESKRIVVMMDRL 158
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A E T D + L S T I R + + +++
Sbjct: 159 GYDFLTALEKAEKITASDDLSRIWAGLRLSILLDTDIVAYFRDRIDYYSRVQENKSKLSL 218
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIG 316
SLG + + L++ + G
Sbjct: 219 DSLGLASESFVALVIAFPLLIFMTG 243
>gi|229587498|ref|YP_002860536.1| bacterial type II secretion system protein F domain protein
[Clostridium botulinum Ba4 str. 657]
gi|229260271|gb|ACQ51308.1| bacterial type II secretion system protein F domain protein
[Clostridium botulinum Ba4 str. 657]
Length = 308
Score = 46.7 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 18/202 (8%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
E I K AG ++ I + + + ++ L + I+
Sbjct: 63 EKIERKFLKAGINADVENIIFSYLLIAT-----------LILIIGIIINNTILSLIVPIV 111
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+G +G+ +I + R I + + +AL + + ++ A++ V ++
Sbjct: 112 LGAMGY----AYIEHKGTNRVIEINKQFINALIDIGDYLRIDSNLSNAIKNVTPNVA--- 164
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
PL E + I E+ N A ++F R V +++ ++ ++ D
Sbjct: 165 YPLKGEFIYIIKEIDSNTNILNALKHFDYRVNSTVVNTWVDSMLFANDKRANVSDLCIKH 224
Query: 276 VSETRSERLMEAEKKAASLGPK 297
++ R + A G K
Sbjct: 225 SAKVRKRLTQNEKLNAKLSGLK 246
>gi|162660585|gb|EDQ48445.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 469
Score = 46.7 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 18/187 (9%), Positives = 57/187 (30%), Gaps = 24/187 (12%)
Query: 9 FDATELAVAITTAVSIFSLIYA--VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+L +A + ++ +++A +V S ++ + R+ + +
Sbjct: 1 MTPQQLWIASISLGALGLVLWACALVWKLWRSARASSQVARILQARDTASTPKAATKSAM 60
Query: 67 ---------------SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
+S + + + + L+ + L AG +
Sbjct: 61 QANDAQLLNPLSINVRSSDSPQAAAANLPPPAWLQWGVAKALLADEDRKLLDQAGVGTRN 120
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ R+V+ ++ +L + + + + L +G P ++ +
Sbjct: 121 GSMAYVASRMVLCVVLPLLALGVLRPGEN-------AALIYGFLGVSLGLMLPKWFLRSR 173
Query: 172 VQKRQSS 178
+ R+
Sbjct: 174 AKGRREQ 180
>gi|38232936|ref|NP_938703.1| hypothetical protein DIP0315 [Corynebacterium diphtheriae NCTC
13129]
gi|38199194|emb|CAE48819.1| Putative secreted protein [Corynebacterium diphtheriae]
Length = 192
Score = 46.7 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 5/150 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ R A + LD+ + +G+S+ Q A S +E A S
Sbjct: 43 RLRTRCDYHAAAEQLDIFVATSRAGLSLAQ--ACAAVAATTSSAVDAEPWRQVAAMASLG 100
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A N + + + +D G SI + R + +A
Sbjct: 101 VPMSRACTPLAN---TEGLVAVVAVMRAADASGASIAAGCERIARSLRDHAVDTYTAQAE 157
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
G + +P+ + FLP L+ + P +S+
Sbjct: 158 RTGVLIALPLTLCFLPAFFLLGLAPVAISL 187
>gi|313140674|ref|ZP_07802867.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313133184|gb|EFR50801.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 171
Score = 46.7 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
LL + + SG+S+ ++L V E +GG + L + + A+
Sbjct: 39 LLSVSLRSGMSVTRSLEGVGEAVGGALG---GGLCAVADALHRGSSWKDAWNAADFGDYA 95
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ L S G S L + E+++ASL KL +P + LP
Sbjct: 96 ETSAILRGVLEPSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLLLPTGLCMLP 155
Query: 309 VLILVIIGPAILS 321
+ + I P++++
Sbjct: 156 AFVFLGILPSVMA 168
>gi|261363883|ref|ZP_05976766.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
gi|288567880|gb|EFC89440.1| 3-isopropylmalate dehydrogenase [Neisseria mucosa ATCC 25996]
Length = 413
Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P K++ + L +++G+ + QA VA G + ++E ++
Sbjct: 56 PLRISKVKATKKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLM 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A++ +F + LI + G + L L +
Sbjct: 114 QVRADVEQGSALGKSFAKYPKY-----FDRFYCNLIAAGEAGGVLESLLDKLAVYKEKTQ 168
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + K A L +++ ++ L +++ + P + M
Sbjct: 169 AIKKKVKTA-LTYPISIVVVAIALIFVMMRWVLPEFGKVYAGMG 211
>gi|84496010|ref|ZP_00994864.1| putative integral membrane protein [Janibacter sp. HTCC2649]
gi|84382778|gb|EAP98659.1| putative integral membrane protein [Janibacter sp. HTCC2649]
Length = 288
Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 5/184 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ LL + AV+++ P + + R ++ + L
Sbjct: 54 LLLAGTATGLLVAVATGWLVAVLVVPAAAAGLPVLLSAPPASARIDRLEA-MEEWTRSLS 112
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G+ ++QAL + P+ E+ + L + A F +
Sbjct: 113 GVLTAGVGLEQALIAT---LRSTPDPIRPEVTRLASRLRARWTTEDALRAFADDLDDATG 169
Query: 252 RNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
LI + R G + L L ++ E +A P+ T + +
Sbjct: 170 DVVAANLILGARRRGAGLASVLDALAESVAADVRARREIEADRAKPRATARWVTLITISV 229
Query: 311 ILVI 314
+ +
Sbjct: 230 LAFL 233
>gi|15895374|ref|NP_348723.1| general secretion pathway protein F [Clostridium acetobutylicum
ATCC 824]
gi|15025093|gb|AAK80063.1|AE007711_20 General secretion pathway protein F [Clostridium acetobutylicum
ATCC 824]
gi|325509519|gb|ADZ21155.1| General secretion pathway protein F [Clostridium acetobutylicum EA
2018]
Length = 396
Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ L I ++SGI I +A+ ++ + + + I L + + +F+
Sbjct: 266 FSNTLYILIKSGIDIIKAMHIASKVLENTYAE--KCIKDIIENLRNGKDFRESFQKINIF 323
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T R LI ++ G +I + +R + R + + ++ + P +I
Sbjct: 324 T-----RQTKNMLIMAEECG-NIEEIMRNISDLYREQFKDDLKRIINFIE-----PCMII 372
Query: 306 FLPVLILVIIGPAILSIIDTM 326
FL V + +I +IL +I+ M
Sbjct: 373 FLAVFVGTVIISSILPMINIM 393
>gi|269129021|ref|YP_003302391.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268313979|gb|ACZ00354.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 208
Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 6/196 (3%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
+ + G L V I A + ++R+ + P A+ LL
Sbjct: 15 SVALLSGLAMAALLGGPLGVLGGITTAVGVAVALGRLETREERERRMRMVADLPIAIGLL 74
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
C+ G+S D+A+ V + +GG PL E+ A + + A+
Sbjct: 75 AACLRGGLSWDEAVEAVCDAVGG---PLGAELRAVAARVRLGADPAAAWLALAQE---PE 128
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + + ++ G ++ +L L ++ R+ A +A ++G + P+ + FLP
Sbjct: 129 LAPLARTVARAVDSGAALAPALTRLAADRRAAARAAAAARARAVGVRAVAPLGLCFLPAF 188
Query: 311 ILVIIGPAILSIIDTM 326
IL+ + PA+ I T+
Sbjct: 189 ILLGVAPAVAGIAQTL 204
>gi|254381326|ref|ZP_04996691.1| integral membrane protein [Streptomyces sp. Mg1]
gi|194340236|gb|EDX21202.1| integral membrane protein [Streptomyces sp. Mg1]
Length = 305
Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 28/195 (14%), Positives = 57/195 (29%), Gaps = 5/195 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ ++ + A L+ P + + A D L
Sbjct: 54 MAAGALAGVVLWLVTGVFIAGALVFLAVVGVPWLLAPTKSAAARIGKLEALGDWTQRLAN 113
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G +D+AL+ + G ++ E+ + L A +F +
Sbjct: 114 VLRLGRGLDEALQISRK---GCPEDIAGEVGDLVDRLHVGWRPTDALRHFGDALDDVTAD 170
Query: 253 NATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-LPVL 310
AL+ + G + +L L E +A P+ T+ + L V
Sbjct: 171 KVVAALVLSAADRGPGLAQALDDLAESVHEEVARRRAIEADRAKPRTTMRWMTIITLGVA 230
Query: 311 ILVIIGPAILSIIDT 325
+ P+ + T
Sbjct: 231 GAGFLIPSYTAPYGT 245
>gi|52550503|gb|AAU84352.1| conserved hypothetical protein [uncultured archaeon GZfos9D8]
Length = 266
Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 55/183 (30%)
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGIS 199
+ V L F A + R+ I P A+ + G+
Sbjct: 48 VFTGVDVLIFVLGAGLGFLFTFFAFYYYPLVNAWGRRRKIDGVLPYAVGYIASMAVIGVI 107
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ ++++E E + F + VA N + T + Q +
Sbjct: 108 PYEIFKKLSESEEEYKEASIEAKQIVRDVELFGFDFVVALRNLASTTASQNLSAFLQGAV 167
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ G + E +E E E A LG + ++ L ++++ +
Sbjct: 168 TTTLSGGELRMYFINKEKEYMAESRKEQEDFIALLGMISEMYVVGLVATPLFVIVMYTTM 227
Query: 320 LSI 322
L +
Sbjct: 228 LML 230
>gi|220910052|ref|YP_002485363.1| type II secretion system protein [Cyanothece sp. PCC 7425]
gi|219866663|gb|ACL47002.1| type II secretion system protein [Cyanothece sp. PCC 7425]
Length = 406
Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 8/144 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
V +G+++ + L +A+ + + + + ++ A R
Sbjct: 70 FSRQFAALVNAGVALVRGLGVMADQC--TNPKMKKVLTSVNNDVQQGTTLSDAM-----R 122
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ N A+IQ+ G + D L L + + + K+A P + +
Sbjct: 123 GHPEAFDNLYVAMIQAGETGGVLDDVLNRLSKLLEDQARLNNQIKSAMAYPVTVGGLAVL 182
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+++ + P I +
Sbjct: 183 IF-FGMIIFLIPVFSGIFKQLGGQ 205
>gi|269955832|ref|YP_003325621.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269304513|gb|ACZ30063.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 285
Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 17/206 (8%)
Query: 90 KAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLR 149
+ + L AG S + + L+
Sbjct: 29 RTSARIARTQDLLVQAGAASVTPGALYGASAALA-------------AVVLLMVLATTRS 75
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
+ + APS ++ +KR+ S++ WP+ +D L V +G+S+ +A+ +
Sbjct: 76 PAIGLCFAAIAAAAPSALVAARARKRRRSLREVWPEVVDHLASGVRAGLSLPEAV---GQ 132
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SI 268
V L E A+ + + R +AL + G +
Sbjct: 133 LGERGPVELREPFARFAADYRATGRFTESLDLLKARLADPVADRIIEALRLTREVGGSDL 192
Query: 269 GDSLRVLVSETRSERLMEAEKKAASL 294
G LR L + R + E +A
Sbjct: 193 GRLLRTLSTFLREDARTRGELEARQS 218
>gi|297566543|ref|YP_003685515.1| Type II secretion system F domain-containing protein [Meiothermus
silvanus DSM 9946]
gi|296850992|gb|ADH64007.1| Type II secretion system F domain protein [Meiothermus silvanus DSM
9946]
Length = 408
Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ I QAL + + + + E+ + A
Sbjct: 67 LAIFSRQLATMLSAGLPIVQALAILEK--QTEKKSFRAIIKDVRTEVEGGASFSEALARH 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
L+++ ++ L L + + + + K+A LT P
Sbjct: 125 PK-----LFNRLYMNLVRAGETSGNLDAILDRLSAFLEKDLELRGKIKSA-----LTYPT 174
Query: 303 IIFFLPV----LILVIIGPAILSIIDTM 326
I+F + +L I P +I+ ++
Sbjct: 175 IVFVFAIGVTYFLLTGIVPQFANILTSL 202
>gi|317508888|ref|ZP_07966527.1| alanine rich membrane protein [Segniliparus rugosus ATCC BAA-974]
gi|316252849|gb|EFV12280.1| alanine rich membrane protein [Segniliparus rugosus ATCC BAA-974]
Length = 97
Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
Q A+ ++ + +S R GT++ D L L + R+E L A
Sbjct: 1 MGAEPQTAW---AEAEELPATAALARMAKRSARSGTALADGLVELATTERAEALDRATAG 57
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A G L P+ + FLP + + + P I+ +
Sbjct: 58 AGRAGVLLAGPLGLCFLPAFLCLGVIPVIIGL 89
>gi|311065087|ref|YP_003971813.1| hypothetical protein BBPR_1759 [Bifidobacterium bifidum PRL2010]
gi|310867407|gb|ADP36776.1| Conserved hypothetical protein, TadC-like protein [Bifidobacterium
bifidum PRL2010]
Length = 141
Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 3/141 (2%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ P + LL + + SG+S+ ++L V E +GG + L + + A+
Sbjct: 1 MSLPLLIGLLSVSLRSGMSVTRSLEGVGEAVGGALG---GGLCAVADALHRGSSWKDAWN 57
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ AL S G S L + E+++ASL KL +
Sbjct: 58 AADFGDYAETSAILRGALEPSWTRGVSPIGRLTTASEQWMEGERTAIEQESASLSVKLLL 117
Query: 301 PMIIFFLPVLILVIIGPAILS 321
P + LP + + I P++++
Sbjct: 118 PTGLCMLPAFVFLGILPSVMA 138
>gi|302544239|ref|ZP_07296581.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302461857|gb|EFL24950.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 230
Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 7/134 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + + +G +AL + S L E L A F + A
Sbjct: 54 VIELCGTVAGELRAGRQPGEAL------LSVPSGDLGERWGLVSAAARFGGDVPEALRRA 107
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + + + G + L + S R+ER +A GPK+TV
Sbjct: 108 ARQPGAEGLTGVAACWQVAVDEGAGLAAGLDRVASALRAEREQREILRARLAGPKVTVA- 166
Query: 303 IIFFLPVLILVIIG 316
++ LP LV+
Sbjct: 167 VLAVLPAFGLVMGA 180
>gi|288920025|ref|ZP_06414345.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288348589|gb|EFC82846.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 304
Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 14/285 (4%)
Query: 17 AITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRD 76
A+ A ++ + I LG R E + + S + S R
Sbjct: 7 ALAVAPALCGAAFGAGIYLLGRNIRRTR--------EAVAVRDDPSEDRLPPRSHRVYRL 58
Query: 77 SKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+ L + ++ + ++ + ++L G L + + ++ +
Sbjct: 59 AAGLDSVMEHVLGRSRSRRLLLTDELAILG---RDPALHTATRMLRLLVASTAATVLVVA 115
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES 196
++ P L A +L G +GF + + + V R+ ++ A LDL+ I +
Sbjct: 116 LTAAGVDLPGLLLPAACLLCGILGFLSADLPVHRRVAARRREVRAAVAAYLDLVRILLVG 175
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G + ALR A G S + + +
Sbjct: 176 GAPLYSALRTAANAGEGW--AFGAISSSLDWARSHGLPPDAGLALLAAQVPLAEFTDLRL 233
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + R G S +LR R+ + + ++ + +P
Sbjct: 234 TVGSALR-GASPVIALRSKAVHLRAAEAAQVRLETSTADAAMELP 277
>gi|333025386|ref|ZP_08453450.1| hypothetical protein STTU_2890 [Streptomyces sp. Tu6071]
gi|332745238|gb|EGJ75679.1| hypothetical protein STTU_2890 [Streptomyces sp. Tu6071]
Length = 266
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G +A V + + E + AE+ + A+ F +
Sbjct: 136 CVAAGAGPVEAAEAVGASLDEL---VGERLRHVAAEIRLGGEPERAWALFG---SLPGAG 189
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L ++ G + L ++ R+ A A G +T P+ + FLP +L
Sbjct: 190 GLAGLLQRATVSGAPVAGPALALAADCRARWARGATAAARRAGVLVTAPLGLCFLPAFLL 249
Query: 313 VIIGPAILSIIDTM 326
+ + P +L + +
Sbjct: 250 LGVAPVLLGLAGEL 263
>gi|297572241|ref|YP_003698015.1| type II secretion system protein [Arcanobacterium haemolyticum DSM
20595]
gi|296932588|gb|ADH93396.1| type II secretion system protein [Arcanobacterium haemolyticum DSM
20595]
Length = 175
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ L A+ +D +AL + G + L+ R
Sbjct: 76 LSEVANMLVMGATWDEAW------VGVDGYDLLARALKPAWVDGVAPVPLLQRAAQTHRL 129
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ A++ AA LG L +P+ + FLP +++ + P + ++
Sbjct: 130 TQVRRAKEAAARLGAALVMPLGLCFLPAFVILGVVPVVAGAASSIW 175
>gi|302520917|ref|ZP_07273259.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302429812|gb|EFL01628.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 275
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G +A V + G + E + AE+ + A+ F +
Sbjct: 145 CVAAGAGPVEAAEAVGASLDGL---VGERLRHVAAEIRLGGEPERAWALFG---SLPGAG 198
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L ++ G + L ++ R+ A A G +T P+ + FLP ++
Sbjct: 199 GLAGLLQRATVSGAPVAGPALALAADCRARWARGATAAARRAGVLVTAPLGLCFLPAFLI 258
Query: 313 VIIGPAILSIIDTM 326
+ + P +L + +
Sbjct: 259 LGVAPVLLGLAGEL 272
>gi|295837423|ref|ZP_06824356.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
gi|197696060|gb|EDY42993.1| translation initiation factor IF-2 [Streptomyces sp. SPB74]
Length = 304
Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 8/167 (4%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P W+ +RQ P A DLL CV +G +A V G P+
Sbjct: 143 GGNLPPTWL--RRPRRQDGTPADLPLAADLLAACVAAGAGPVEAAEAVG---GSLDGPVG 197
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
E + AE+ + A+ F + L ++ G I L ++
Sbjct: 198 ERLRHVAAEIRLGGEPERAWALFG---SLPGAGGLAGLLQRATLSGAPIAAPALALAADC 254
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ A A G +T P+ + FLP +++ + P +L + +
Sbjct: 255 RARWARGATAAARRAGVLVTAPLGLCFLPAFLILGVAPVLLGLAGQL 301
>gi|289770835|ref|ZP_06530213.1| predicted protein [Streptomyces lividans TK24]
gi|289701034|gb|EFD68463.1| predicted protein [Streptomyces lividans TK24]
Length = 281
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ + + AE+ A+ + + L +++ G + L
Sbjct: 166 GPVGDALGRGAAEVRLGGEPAGAWRGLA---AVPGAVPLARLLERAEVSGLPAAGPVARL 222
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++ +A +T P+ + FLP I V + P ++
Sbjct: 223 AAQARADWARTTTVRARRAAVMVTAPVGLCFLPAFIAVGVLPVVI 267
>gi|224283519|ref|ZP_03646841.1| Flp pilus assembly protein [Bifidobacterium bifidum NCIMB 41171]
Length = 182
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 13/182 (7%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSI----------KRAWPDALDLLLICVESGIS 199
+ + + A +W + R + + + P + LL + + SG+S
Sbjct: 1 MWNAMACAVMVLMALMIWPDSARSGRLTGMPSDVAGEGGAAVSLPLLIGLLSVSLRSGMS 60
Query: 200 IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALI 259
+ ++L V E +GG + L + + A+ + L
Sbjct: 61 VTRSLEGVGEAVGGALG---GGLCAVADALHRGSSWKDAWNAADFGDYAETSAILRGVLE 117
Query: 260 QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
S G S L + E+++ASL KL +P + LP + + I P++
Sbjct: 118 PSWTRGVSPIGPLTTASEQWMEGERTAIEQESASLSVKLLLPTGLCMLPAFVFLGILPSV 177
Query: 320 LS 321
++
Sbjct: 178 MA 179
>gi|330969401|gb|EGH69467.1| type II secretion system protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 74
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%)
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
L Q G SL L RL ++ + L K++V M++F P L++V+
Sbjct: 1 CVILNQLIHQGGGALKSLLTLKQLIDDRRLTRLQEYISKLSAKMSVVMMVFLFPALLIVL 60
Query: 315 IGPAILSIIDTMK 327
GP ++I +
Sbjct: 61 AGPGFMAISRALG 73
>gi|302539257|ref|ZP_07291599.1| integral membrane protein [Streptomyces sp. C]
gi|302448152|gb|EFL19968.1| integral membrane protein [Streptomyces sp. C]
Length = 305
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 28/257 (10%), Positives = 76/257 (29%), Gaps = 18/257 (7%)
Query: 57 KQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
Q+ + A + + ++ + AG +
Sbjct: 3 SAQLALVAALCALVMVLAGLIAVREWRGRVVDPAKPASRRASRIRAAKAGLPEAWQRR-- 60
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
R +V + + ++W + + +L G P + + +++
Sbjct: 61 --WRALVTTAGITVLVVWAYTGWPVHG----------VLAGAAVLGFPFLLNPGVAAEQR 108
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
A L+ L +GIS+ Q +R A + P++ + L + +
Sbjct: 109 IERLEAIGQWLNGLAGIHTAGISLVQTIRASARN---APAPIAANVRALDERLRSGMDSK 165
Query: 237 VAFENFYNRTQMDCVRNATQALI-QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
AF F + V + + G + +L L + + ++
Sbjct: 166 QAFALFADELGDGVVDHVALLFQSHAANMGPGLSTALEALAVTIHQQAADARDIESDRAK 225
Query: 296 PKLTVPMIIFFLPVLIL 312
+ + ++ + ++ +
Sbjct: 226 IRKSSRIVSIVICIVFV 242
>gi|284031222|ref|YP_003381153.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283810515|gb|ADB32354.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 301
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 6/157 (3%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++R A + L + + ++QA+ A + + + L + L
Sbjct: 94 ERRAIERLDALATWTEALRDTIAGAVGLEQAIPATAVNAA---PAIKPGLNLLVDRLRIR 150
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAEKKA 291
A F + AL+ + R G + + L L R E + + A
Sbjct: 151 EPLPSALMRFADDLDDPSADLIVAALVLNARLRGPGLREVLSALADSAREELDVRRKVAA 210
Query: 292 ASLGPKLTVPMIIFF--LPVLILVIIGPAILSIIDTM 326
+ +V +++ L LV+ PA + +
Sbjct: 211 ERRSTRRSVQVVVAITLLVAAALVLFNPAYVEPYTSF 247
>gi|261401635|ref|ZP_05987760.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
gi|296313613|ref|ZP_06863554.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
43768]
gi|313667735|ref|YP_004048019.1| pilus-assembly protein [Neisseria lactamica ST-640]
gi|269208274|gb|EEZ74729.1| 3-isopropylmalate dehydrogenase [Neisseria lactamica ATCC 23970]
gi|296839851|gb|EFH23789.1| 3-isopropylmalate dehydrogenase [Neisseria polysaccharea ATCC
43768]
gi|309378660|emb|CBX22731.1| pilus assembly protein PilG [Neisseria lactamica Y92-1009]
gi|313005197|emb|CBN86630.1| pilus-assembly protein [Neisseria lactamica 020-06]
Length = 410
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQVTRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + AF N L+ + G + L L +
Sbjct: 111 EIRSNVEQGSTLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAVYKEKTQ 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 166 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 208
>gi|134046667|ref|YP_001098152.1| type II secretion system protein [Methanococcus maripaludis C5]
gi|132664292|gb|ABO35938.1| type II secretion system protein [Methanococcus maripaludis C5]
Length = 352
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 14/209 (6%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ AG + + +++++ I +I+ I + F +++
Sbjct: 106 KRDYQYAGI----ADERVYFLKMMIVAISVIILFILYGILIGNIISSFLNGALLAVIVVI 161
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G P + ++ + IK ++ L+ + SG SI ++L+ +A + +
Sbjct: 162 GGIFYPKLKLTLF----RGEIKIQVLMSILHLISMLNSGASIQESLKNIANN--PEYGIT 215
Query: 219 SEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
S E I +++ N A E RT++ +R LI + G + L L +
Sbjct: 216 SFEFRSVIKDINQGGYNFVEALERAKLRTKIFIMRQLYDQLILAANKGGT-QLLLENLYN 274
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFF 306
E R ++ ++ +I
Sbjct: 275 EI--VRESLSKIDSSKFQISNLGNLIFGI 301
>gi|14590458|ref|NP_142526.1| flagellar assembly protein J [Pyrococcus horikoshii OT3]
gi|3256965|dbj|BAA29648.1| 573aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 573
Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 67/213 (31%), Gaps = 6/213 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+++ + + L+ + + + + + +L+ P L ++ + + +
Sbjct: 15 KADLNPKEYMKKILIPGLAGSGILFLVMGFFTRLITLPRGLVFFMYLVPAIIAVYV-AAY 73
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ SI P + + S I LR +A+ + ++ EM
Sbjct: 74 PYLAADSKRLSINSKLPYFITYFAVLSTSEIGRTDILRVLAK--DPKLGAIANEMKKVYI 131
Query: 228 EL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + AF RT + L S G + D L +
Sbjct: 132 IVDKLHRSLPEAFRFLAKRTPSKVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTF 191
Query: 287 AEKKAASLGPKLTVP--MIIFFLPVLILVIIGP 317
E L + +II + +IIGP
Sbjct: 192 YEGALYDLDIFKEIYESVIISIVFAGAFMIIGP 224
>gi|261378358|ref|ZP_05982931.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
gi|269145466|gb|EEZ71884.1| 3-isopropylmalate dehydrogenase [Neisseria cinerea ATCC 14685]
Length = 410
Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQISRVKTTSKRKITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHANPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+E+ AF + L+ + G + L L +
Sbjct: 111 EIRSEVEQGTTLSRAFSRYPKY-----FDRFYCNLVSAGEMGGVLESLLDKLAVYKEKTQ 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A L ++V + L ++++ + PA + M
Sbjct: 166 SIRKKVKTA-LTYPISVIAVAIGLVFVMMIFVLPAFKEVYSNMG 208
>gi|146296096|ref|YP_001179867.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409672|gb|ABP66676.1| type II secretion system protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 403
Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 52/155 (33%), Gaps = 8/155 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
VQ R+ + + +GI + AL +AE G+ + + ++
Sbjct: 54 VQLRKKIPIKDLAVFCRQFATMLMAGIPMVSALDVIAEQFKGRY--FGKVLEDIHKKVQS 111
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A +I++ S+ +L + + E + +
Sbjct: 112 GSMLSRALAEKAECFPP-----ILINMIEAGEMSGSVDQALDRMATHFEKELKLRQKIIN 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
A + P + + + I L +++L + P + I +
Sbjct: 167 ALIYPAIVILVAIGVL-IIMLTFVVPTFVGIFSEL 200
>gi|297627360|ref|YP_003689123.1| hypothetical protein PFREUD_22090 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296923125|emb|CBL57712.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 297
Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 21/200 (10%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L A + + + + ++G + P + V +L
Sbjct: 42 LVRARWHGATRAQQ---ISWSLAVAGALVGYLLTRSLLVTGGVPALILVLPGLLSAPP-- 96
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
R + A + LL+ V +G S+ A+R + L
Sbjct: 97 ------------NRDVEVLEACDRWVRLLIGSVSTGKSVPDAIRATRNQVA---PVLRAP 141
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT-SIGDSLRVLVSETR 280
+ IA L + A + ALI + R G GD+LR L +R
Sbjct: 142 VDGLIARLDARWSTASALRAMADDLAHPDADAIIAALIVATRRGGTGTGDALRALGQHSR 201
Query: 281 SERLMEAEKKAASLGPKLTV 300
E P++ V
Sbjct: 202 RRLQSLREIATERAKPRIVV 221
>gi|83589204|ref|YP_429213.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
gi|83572118|gb|ABC18670.1| hypothetical protein Moth_0336 [Moorella thermoacetica ATCC 39073]
Length = 316
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 35/296 (11%), Positives = 81/296 (27%), Gaps = 29/296 (9%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
V++F V L L R + + +K + R
Sbjct: 6 LAFVAVFGAGLGVSAGGLCYSAL----------RLLKAPRLALPRRKSREMPPVIRRFLH 55
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
+ +L E L+ +G ++G++
Sbjct: 56 QGQGNEDELPPWLKQWSERTSLMLKRSGVHIPVMRY--------------LVGLLAGGAG 101
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ + A +++ AP V + VQ R++ I A+ +
Sbjct: 102 GFITGVTLMKNLPAAVILALSIALAPDVVLIGRVQNRRNKIIEQLAAAVRIFAAEFGDTP 161
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ +AL A+ + PL + + +L+ + + R Q L
Sbjct: 162 QVPRALSITAQKV---PAPLGDILRQADTDLAAGKSIDDVCLYLMKELDFEYGRMFVQLL 218
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI-IFFLPVLILV 313
+ ++ L + + + + + + + LP +L+
Sbjct: 219 RLAWDD-AAVRPLFTRLAGRIANLQGLIYKNASGMAYSRFMGMFVNALILPEFLLM 273
>gi|146303434|ref|YP_001190750.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
gi|145701684|gb|ABP94826.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
Length = 615
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 40/244 (16%), Positives = 88/244 (36%), Gaps = 19/244 (7%)
Query: 95 DENIVNKLRAAGFRSE-----YSLNILLVVRLVVPIIFLILGI-----IWIFGYDKLLEY 144
+I KL AG ++ + L+V V I LG+ +++
Sbjct: 37 ARSIEKKLLLAGLSTDPQLFAAQMFFYLMVSSVFSAILAFLGVYVLVKLYLVFRVAKFAV 96
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
+ + +I V + +V IS ++ R+ I + I + SG+S
Sbjct: 97 AGLMFIIFAAIIPPVTYLLLNVNISQNIENRRIGIDAETAAFSAVFTIFLRSGLSPRILF 156
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
R++ I +++ +L ++ N + A + + + + + + + R
Sbjct: 157 DRISRTIAFNY--INQVLLYVSKRINFLGENVEDALLHAIRISPSKILNDFFVSYVAAVR 214
Query: 264 YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI------IFFLPVLILVIIGP 317
G + D++ + + + A A L +I I F +L+L + P
Sbjct: 215 SGAPVLDAVSAKAKDILKQLELGAALAADRLSGVGETYVIWLASGYITFFLILLLQALFP 274
Query: 318 AILS 321
+I+
Sbjct: 275 SIVG 278
Score = 39.8 bits (91), Expect = 0.61, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 79/207 (38%), Gaps = 3/207 (1%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L V LVV + L + I V +ILIG++ P +++ K+
Sbjct: 327 LGVGLVVMFVLLGVTKQLIPFVTLTGNISNVTPVTIIILIGFLIAAIPPAIVTSRELKKG 386
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ + L + + +G+S + ++ + E + LS + A +S +
Sbjct: 387 TGYDPYVVNLLRAISEGIRAGLSPETIIKNIKES--QEMGKLSYILKRIYAYISLGYPLR 444
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
AF R + ++ G+ +S+ L + ++ ++ E + +
Sbjct: 445 DAFLKGAEEIVDFTSRISLVSMADMIDIGSLTPESIESLAEQVETQIKIKRE-YESKVKI 503
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSII 323
L P I + ++ + ++ AIL +I
Sbjct: 504 LLYTPYIGVIISIIAVNLLSAAILGLI 530
>gi|114566084|ref|YP_753238.1| type II secretion system protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337019|gb|ABI67867.1| type II secretion system protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 402
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G SI +A + + + ++ L + +L ++ VA
Sbjct: 68 ITRQFLAMLTAGFSIIKAFKVMGQKNRNRT--LKKALLKIHDDIEQGQALWVALSQHPK- 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +I++ G ++ L+ L E+ + A+ KAAS+ P L + ++
Sbjct: 125 ----VFSSIYINMIKAGEMGGTLETVLKNLSHHLEREQDINAKIKAASIYP-LIITLMAL 179
Query: 306 FLPVLILVIIGPAILSIIDT 325
+ I+ I PA +++ +
Sbjct: 180 LVIFFIISFIMPAFVNVFAS 199
>gi|91773538|ref|YP_566230.1| flagellar assembly protein J [Methanococcoides burtonii DSM 6242]
gi|91712553|gb|ABE52480.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 551
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 22/211 (10%), Positives = 62/211 (29%), Gaps = 11/211 (5%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
VV F+ + ++ D L ++ F P + + I
Sbjct: 25 VVSFGFIFAIVAYVLLPDLFTGNTKMLPALIPVICIIFVFYYPFSILGGKAAQ----IDN 80
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFE 240
+ + + + ++ V+++ L++E ++ + + A
Sbjct: 81 NMHYYITHMGVISTAETPRLDIIKIVSQN--ESYGFLAKESEKIYDLVTVWNMSLSDACR 138
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP---- 296
RT + + G I L+ + +E + ++
Sbjct: 139 FTSKRTPSILYEDFLDRFAHGLQSGEDIKSFLKAEQNVVMNEYESMYDSALYAIEVIKEL 198
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+++ M + FL +++ + + M
Sbjct: 199 FISLIMALIFLASFAIIMPVITGMDAMLLMS 229
>gi|328883371|emb|CCA56610.1| hypothetical protein SVEN_3324 [Streptomyces venezuelae ATCC 10712]
Length = 260
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G +A V +GG PL E + T AEL + F + +
Sbjct: 134 GAGPGEAAEAVGRSLGG---PLGERLTRTAAELRLGGEPGEVWRRFG---AIPGAEGLAR 187
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ ++ G +++ + RS R A +A ++ P+ + FLP + V +
Sbjct: 188 CMERAGSSGAPAAEAVARHAAALRSARARAAAARARRAQVLISAPVGLCFLPAFLAVGVA 247
Query: 317 PAILSIIDTM 326
P ++ + +
Sbjct: 248 PVVIGLATGL 257
>gi|326328877|ref|ZP_08195211.1| type II secretion system protein [Nocardioidaceae bacterium
Broad-1]
gi|325953362|gb|EGD45368.1| type II secretion system protein [Nocardioidaceae bacterium
Broad-1]
Length = 71
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 258 LIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+ ++ G + ++ L + E E +A S+G K VP+ I LP +L+ + P
Sbjct: 1 MARAQATGAPVATTVERLADDLTRNARAEVEDRARSVGVKAAVPLGICLLPAFLLLGVVP 60
Query: 318 AILSIIDTMK 327
+ ++ +
Sbjct: 61 VVGGLLSNLG 70
>gi|154504610|ref|ZP_02041348.1| hypothetical protein RUMGNA_02116 [Ruminococcus gnavus ATCC 29149]
gi|153795092|gb|EDN77512.1| hypothetical protein RUMGNA_02116 [Ruminococcus gnavus ATCC 29149]
Length = 491
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 33/232 (14%), Positives = 81/232 (34%), Gaps = 19/232 (8%)
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+ + +++ G+ S V+ ++ + I G ++F
Sbjct: 4 YWNPKLLNLEIQRCGYTFSAS----SYVKYLLAVYLGIAGFAYLFQLQVFFS-------- 51
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
VI++ P+V++ N + ++ LL + I AL
Sbjct: 52 -VIVMAAASIFVPTVFLMNYKNLYEEKKFEDLTAYMEQLLYSFKRRAKILTALEDTKLLF 110
Query: 212 GGQSVPLSEEMLLTIAELSFLPNR----QVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
L + + + + Q AF + L+Q ++ G S
Sbjct: 111 RQGESRLYNGIEYAVEHIQSAQSEGNIYQEAFSEIEKEYGCKRLYKIHDFLMQVEQSGGS 170
Query: 268 IGDSLRVLVSE--TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
++ +L+++ ER+ +K+ ++ K+T+ + + FL + +++ P
Sbjct: 171 PDAAIEILLNDRKMWIERIYGLQKEKKNIKVKVTIGIGLSFLICAMSILMLP 222
>gi|269958189|ref|YP_003327977.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269306870|gb|ACZ32419.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 291
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 9/187 (4%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + ++ Y V A+++ P++ + +R ++ + L
Sbjct: 56 LALVGLVAGVVIYLIAGWVIAIVVGPIAAAGLPALLSAPGSAERIDKLEA-LEEWTRGLA 114
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ G+ +++ALR + + E+ +A L + + A F +
Sbjct: 115 GVLTVGVGLEEALRAT---LRSTPDAIRPEVTTLVARLRARMSTEDALRAFADDLDDATG 171
Query: 252 RNATQALIQ-SDRYGTSIGDSLRVLVS----ETRSERLMEAEKKAASLGPKLTVPMIIFF 306
LI + R G + L L + R+ R +EA++ + + +
Sbjct: 172 DLVASFLISGARRRGQGLASVLNSLAESVAADVRARRAIEADRAKPRATARWVTIITLGV 231
Query: 307 LPVLILV 313
L VL +
Sbjct: 232 LGVLFIF 238
>gi|126658485|ref|ZP_01729633.1| type II secretion system protein [Cyanothece sp. CCY0110]
gi|126620227|gb|EAZ90948.1| type II secretion system protein [Cyanothece sp. CCY0110]
Length = 404
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 53/142 (37%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L ++E + L + + AE+ + A E +
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSE--QATNPKLKKALSAISAEVQQGISLSEALEKHPSC 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++++ G + + L L ++ + K+A P +TV ++
Sbjct: 127 -----FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYP-VTVGILAV 180
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ + + + P I + +
Sbjct: 181 IVFFAMTIFLIPVFAGIFEDLG 202
>gi|18313580|ref|NP_560247.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
gi|18161124|gb|AAL64429.1| hypothetical protein PAE2779 [Pyrobaculum aerophilum str. IM2]
Length = 261
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 35/205 (17%), Positives = 79/205 (38%), Gaps = 3/205 (1%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
R V + + G G L + ++ G + F ++ +LV R
Sbjct: 15 YSYRRYVTALAAVPAGTAASAGAVAALLLGPVGGLALGLMAGLLAFAGLLLYPVHLVSAR 74
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPN 234
+S + + L +LL + +G+ + +A+ R+AE + ++ E+ L E+ +
Sbjct: 75 RSHFENNFVYTLGVLLPLLAAGVPLGRAVTRLAEVEEDKY--IARELALAAREMIVMGAS 132
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
++ A + R R + LI+S + + L + + + A+ SL
Sbjct: 133 QEEALAHSAERVPSVTYRETVEVLIRSAKITQRVDAVLLARLDWLLRNKQVRAQSLIRSL 192
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAI 319
+ ++ L L++ I+ +
Sbjct: 193 SLMFEIFVVAAMLLPLMVYIVALSF 217
>gi|309389115|gb|ADO76995.1| Type II secretion system F domain protein [Halanaerobium praevalens
DSM 2228]
Length = 414
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ L + + +GI + ++L + + E + +A++ A E
Sbjct: 78 LANFAQRLSVLIAAGIPLVRSLTIIKNQSNIKHE--KEMLTQLLAKVEAGETLSSALEEQ 135
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
LI++ G + + L LV R+ + E K+A L +T+ +
Sbjct: 136 PKYFP-----KLFVHLIRAGETGGVLDEVLAELVDYYRNRDKINKEVKSA-LYYPITIVL 189
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKDH 329
+ +++ + P IL ++
Sbjct: 190 VAIVAVFILMGFVLPNILDMLTGFGGQ 216
>gi|156937800|ref|YP_001435596.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I]
gi|156566784|gb|ABU82189.1| hypothetical protein Igni_1010 [Ignicoccus hospitalis KIN4/I]
Length = 326
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 9/209 (4%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ PII + + + F L + +L + F + + R ++
Sbjct: 78 FIAPIIAAFTFFVTFYVLYLPVPMVFALTFLSFVLGYAILFMLFYMIPIMMFSSRAPQLE 137
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIG--GQSVPLSEEMLLTIAELSFLPNRQVA 238
++ L SG + +ALR++ E G L E + +
Sbjct: 138 KSLVVLYAYLAALGVSGTTYSEALRKLYEKSESLGAEPELGEVVKRVFI---LGEDIVEV 194
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ T N + L GT L + E K + L
Sbjct: 195 LKEVAEMTPHRDFSNFLRGLANVIESGTG----LENFADVGFETSMASMEAKMKEVMGAL 250
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ ++ ++ I+G + ++ TM
Sbjct: 251 EIMSEMYVTGAAVMPILGLSFAVVLSTMG 279
>gi|312194222|ref|YP_004014283.1| type II secretion system F [Frankia sp. EuI1c]
gi|311225558|gb|ADP78413.1| Type II secretion system F domain protein [Frankia sp. EuI1c]
Length = 501
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 24/222 (10%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I L++ + L Q G ++ G V + ++ + R+ + P
Sbjct: 279 IALVIAAGGLCAGAAALVSHGQRGFGVLLATGAVAALVGAGMRTDPDRARRERLLADLPL 338
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
ALDL+ C+ +G ++ AL + +GG PL E+ T L
Sbjct: 339 ALDLVAACLVAGATVPAALEATGDGVGG---PLGAELRATARGLRLGAPAGHTTTRLIAA 395
Query: 246 TQM---------------------DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
Q + A QAL + + G + D+L + S R++
Sbjct: 396 GQGPPGPFPGPLRRVTGHRGTGRGQPLAAAAQALGRVESSGARLADALTSIASRARAQSH 455
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
EA A G P+ + FLP +L+ + P IL +
Sbjct: 456 DEAIGAARRAGVAAVAPLGLCFLPAFLLLGVVPTILGSFHGL 497
>gi|226303995|ref|YP_002763953.1| hypothetical protein RER_05060 [Rhodococcus erythropolis PR4]
gi|226183110|dbj|BAH31214.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 194
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL C+ +G+ + A+ +A P+++ + L+ + A+
Sbjct: 55 LDLLGACLRAGLPVSAAITAMAS---TAPKPMADTLSRVADLLTLGADPDAAWSEAALDP 111
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + +S +S+ S+ L +R + A A G ++ P+ + F
Sbjct: 112 DTEALARMARRSARSG---SSLSSSMAELAERSRGDAEDLAAAAAERAGVLISGPLGLCF 168
Query: 307 LPVLILVIIGPAILSIIDT 325
LP I + I P ++ + T
Sbjct: 169 LPAFIALGIVPVVIGLATT 187
>gi|196231539|ref|ZP_03130397.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
gi|196224392|gb|EDY18904.1| type II secretion system protein [Chthoniobacter flavus Ellin428]
Length = 406
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 7/156 (4%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLP 233
R + L V++G+ + L + E + L + A +
Sbjct: 54 RGKITETDLVLFTRQLATMVDAGLPLVAGLTALYEQADPKRQAGLRRIIGEVSALVQQGD 113
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A +++++ G + + L L + S ++ + K+A
Sbjct: 114 SFFEAISK-----HPSVFNRLYVSMVKAGESGGLLAEILDRLATFLESAARLKKKVKSAM 168
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
P + + + + ++V + P I +
Sbjct: 169 TYPVIVLCIALCI-TTFLIVKVVPVFGEIFADFGAN 203
>gi|152990756|ref|YP_001356478.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
gi|151422617|dbj|BAF70121.1| general secretory pathway protein F [Nitratiruptor sp. SB155-2]
Length = 412
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 169 SNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
L+++R+ I + A+ L + +GIS+ AL VA L + L
Sbjct: 58 RFLMEQRKGKINREGLIAAIRQLAVMTNAGISLYDALMEVAT--QTNDAKLKQIFLDVAN 115
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + A + + N + + + + +L L S
Sbjct: 116 GINSGISFSEALKQYQN-----ELGSLVITMATLGEKTGDMAHALFTLASILEQINENIK 170
Query: 288 E-KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ KKA + M I F V+++ + P SI D
Sbjct: 171 KFKKAVRYPIIVLSAMAIAF--VIVISYVVPKFKSIFDKF 208
>gi|253574465|ref|ZP_04851806.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846170|gb|EES74177.1| type II secretion system protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 410
Score = 45.6 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +++GISI +A +AE +S PL + + AEL A
Sbjct: 70 NEQFVVFCRQFATMIKAGISIVEATAILAE--QSESKPLKKTLAEVTAELRKGNTLSGAV 127
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++++ S+ ++L L + + K+A +T
Sbjct: 128 AAYPRIFPS-----IFVHMVRAGEEAGSMEETLERLAVYFEKAHVTREKVKSA-----MT 177
Query: 300 VPMIIFFLPVLILVII 315
P+I+ + V +++ +
Sbjct: 178 YPLIVSVMAVFVIIFL 193
>gi|261402229|ref|YP_003246453.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
gi|261369222|gb|ACX71971.1| Type II secretion system F domain protein [Methanocaldococcus
vulcanius M7]
Length = 559
Score = 45.6 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 30/227 (13%), Positives = 65/227 (28%), Gaps = 12/227 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R + ++ I IL +I + + I+I C P +
Sbjct: 7 LRIGLKPRDYFLKIVLPAFIVSILLMIVGSIL--FKGIVLYIFLLLPIVIIVSAICYPYI 64
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + K I + + ++ L+ ++E+ + L +
Sbjct: 65 VLDSQKNK----INERLHIFITKFGTLSITDLNRKDLLKILSEEREELGELAKQAEKLYV 120
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + A RT + L + G + + L +
Sbjct: 121 LTDKWGRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKEFLMKEQDIVMDDYAAF 180
Query: 287 AEKKAASLGPKLTVPM-----IIFFLPVLILV-IIGPAILSIIDTMK 327
++ SL + + + FFL ILV + P + T+
Sbjct: 181 YKRMLYSLDLYKELYVSAMTSVAFFLAFSILVPFLLPFNFVFMATIA 227
Score = 43.3 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 62/189 (32%), Gaps = 4/189 (2%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
++L G + L ++ I+ IL + L PF +++
Sbjct: 249 DRLWHTGKNPTETDKKLKKWTIISFILTAILLAFLLVAKYVLSISPFADIPYMILIAIGF 308
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRRVAEDIGGQSVPL 218
A IS ++R + +P+ L L V + G + +L ++ PL
Sbjct: 309 SPLAIGGLISLREEERVKRKEFVFPEFLRSLGDSVSAKGGGMVSSLEYLSNH---DFGPL 365
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ ++ L+ + ++ F + ++ + + +G + ++
Sbjct: 366 TNDIKRLYKRLALGIDSNKSWRFFGFDSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKN 425
Query: 279 TRSERLMEA 287
R +
Sbjct: 426 FRKIVQLRK 434
>gi|325969839|ref|YP_004246031.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
gi|323709042|gb|ADY02529.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
Length = 620
Score = 45.6 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 28/217 (12%), Positives = 70/217 (32%), Gaps = 7/217 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIF-----GYDKLLEYPFQLRVGAVILIGYVGFC 162
++Y V + V + L + +F + P L V +
Sbjct: 313 YTDYRPYKWAGVSIAVAAVLGALEYMVLFHKDLGNRIYIRGLPVPLDFTIVFGLTLALSF 372
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P+ S V + I R + + L + +SG + ++ + + + +
Sbjct: 373 VPTAIYSMKVVGERWEIDREYAEFLRDVTELRKSGFTPEKTFETL--RYTRKYGAFDQYL 430
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ ++ + + + + + T L ++ G + L +L S S
Sbjct: 431 DKMVKQIRYGVPIREVLSSIMPKLHSYYSKVFTFLLTETIDLGGASPQVLDMLASFASSI 490
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
++ +A + + L V ++V+I +
Sbjct: 491 VSVQENMRARLRPLRYVPYIGAIILIVTLVVLIFSVV 527
>gi|51891534|ref|YP_074225.1| hypothetical protein STH396 [Symbiobacterium thermophilum IAM
14863]
gi|51855223|dbj|BAD39381.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 273
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 56/313 (17%), Positives = 110/313 (35%), Gaps = 42/313 (13%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
+ + A+ + ++ +++P ++ +
Sbjct: 1 MPLVIALFLSGAVFLLLLP---------------------------RGRQGGGEAPWPGP 33
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
++R + L IL + +L +G L +RL +
Sbjct: 34 RWPAVRRLASR--LAGILASGRLARELAVSGLELTLEELALRKIRLAGL---------AL 82
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE 195
L F AP + ++ R+ +++R P L L + E
Sbjct: 83 ACALLLALLGRPGLATLGFAGAVWAFQAPDLEVTRAAAARRRAVQRDLPYFLFTLAVLAE 142
Query: 196 SGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNAT 255
SG+ + AL A + + PL E+ +AE+ +A R + + A
Sbjct: 143 SGMQLLPALDHYARN---AAAPLGREVRSALAEIRMGQPPGMALLEMAQRLDVRDLTRAV 199
Query: 256 QALIQSDRYGTS-IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
AL+Q+ GT + +LR +E R A++ A KL VP+++F LP ++ +
Sbjct: 200 GALVQTMEKGTEGLAAALRAQAAEAWDRRRRLAQEAGAQASVKLLVPLVLFVLPAVLAMA 259
Query: 315 IGPAILSIIDTMK 327
GPAI + + +
Sbjct: 260 AGPAIYAFLTQLG 272
>gi|325294584|ref|YP_004281098.1| type II secretion system F domain [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065032|gb|ADY73039.1| Type II secretion system F domain [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 402
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 63/174 (36%), Gaps = 17/174 (9%)
Query: 162 CAPSVWISNLVQKRQSSIKRA--------WPDALDLLLICVESGISIDQALRRVAEDIGG 213
P ++KR S L +++GI + +A+ ++E+
Sbjct: 37 IFPYEIKEEAIKKRNFSFSIFKKALSVQELAVFFRTLATLLDAGIPLIEAIESLSENFKE 96
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
+ M + L + + + + + + S G ++ SL
Sbjct: 97 DRKKI--FMTKIVNNLREGKSLSESLKIAG--IKDPVIVSFVS----SGEKGGTLVQSLE 148
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ S +++ A + P + + + I + V +++ + P I+SI +MK
Sbjct: 149 IIASILEKREELKSTIINALIYPVVLLVVAIGVV-VFMMLSVIPKIVSIYTSMK 201
>gi|266619933|ref|ZP_06112868.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288868471|gb|EFD00770.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 310
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 23/203 (11%), Positives = 67/203 (33%), Gaps = 13/203 (6%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R + ++ + I+F + ++ + + V V ++G P
Sbjct: 67 LRDTGRADRFEALKRLTLILFAVGAVLALLIDN----------VYMVPIMGIGFSLLPVW 116
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ + + + A+ ++ I ++++ I E +
Sbjct: 117 YLHSTAASYKKHLNEELETAISIITTSYLRTEDIIRSIQENLPYINEPVKANFEAFVYEA 176
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
++ A + + LIQ + S+ ++L + + R+++
Sbjct: 177 RLINANTT--SAINSLKMKIPNRVFHEWCNILIQC-QSDRSMKNTLPTIAQKFSDVRIVQ 233
Query: 287 AEKKAASLGPKLTVPMIIFFLPV 309
+E +A GP+ ++F +
Sbjct: 234 SELEAMMQGPRREAITMMFLVIA 256
>gi|283797137|ref|ZP_06346290.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1]
gi|291075553|gb|EFE12917.1| hypothetical protein CLOM621_07103 [Clostridium sp. M62/1]
Length = 463
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 56/160 (35%), Gaps = 11/160 (6%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL---LLICVESGISIDQALR 205
RV ++L + ++++ + D D+ L + + +G+ + +A
Sbjct: 278 RVLFLVLGTAAAVALEFQKTARQREEQKKRNRELLFDYSDIVSGLCVYLNAGLPVRKAWE 337
Query: 206 RVAEDIGGQ-------SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
R+AE+ EE+ +++ ++ A+ F + R +
Sbjct: 338 RLAEEYREGLELPGSRRRAGYEEIAASVSAMNQGMPELKAYGEFGRSCGLRSYRKLAGLM 397
Query: 259 IQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
Q + G S+ SL + ER A + G K
Sbjct: 398 TQYVKNGSGSLLKSLEEEMESAFEERKEAARRAGEEKGTK 437
>gi|169831132|ref|YP_001717114.1| type II secretion system protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169637976|gb|ACA59482.1| type II secretion system protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 417
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 17/147 (11%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R L V++G+ + L + + ++ L + A
Sbjct: 77 ARDLAVFCRQLATMVQAGMPLLTCLNVLGQQSDNKT--LRLTAASVAMAVEAGNTLSEAL 134
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F ++++ G ++ + L L ++ + + A+ K+A P +
Sbjct: 135 RAFPKIFP-----ELFVTMVEAGETGGALEEVLERLATQLEKDADIRAKVKSAMSYPLVI 189
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + + + ++++ ++ P ++ +M
Sbjct: 190 LAVALAAISIILIFVL-PTFTEMLTSM 215
>gi|59801994|ref|YP_208706.1| PilG [Neisseria gonorrhoeae FA 1090]
gi|194099551|ref|YP_002002681.1| PilG [Neisseria gonorrhoeae NCCP11945]
gi|239999756|ref|ZP_04719680.1| PilG [Neisseria gonorrhoeae 35/02]
gi|240014913|ref|ZP_04721826.1| PilG [Neisseria gonorrhoeae DGI18]
gi|240017361|ref|ZP_04723901.1| PilG [Neisseria gonorrhoeae FA6140]
gi|240081504|ref|ZP_04726047.1| PilG [Neisseria gonorrhoeae FA19]
gi|240113783|ref|ZP_04728273.1| PilG [Neisseria gonorrhoeae MS11]
gi|240116517|ref|ZP_04730579.1| PilG [Neisseria gonorrhoeae PID18]
gi|240118741|ref|ZP_04732803.1| PilG [Neisseria gonorrhoeae PID1]
gi|240121983|ref|ZP_04734945.1| PilG [Neisseria gonorrhoeae PID24-1]
gi|240124280|ref|ZP_04737236.1| PilG [Neisseria gonorrhoeae PID332]
gi|240126491|ref|ZP_04739377.1| PilG [Neisseria gonorrhoeae SK-92-679]
gi|240128954|ref|ZP_04741615.1| PilG [Neisseria gonorrhoeae SK-93-1035]
gi|254494543|ref|ZP_05107714.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
gi|260439726|ref|ZP_05793542.1| PilG [Neisseria gonorrhoeae DGI2]
gi|268595569|ref|ZP_06129736.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
gi|268597604|ref|ZP_06131771.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
gi|268599855|ref|ZP_06134022.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
gi|268602190|ref|ZP_06136357.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
gi|268604455|ref|ZP_06138622.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
gi|268682909|ref|ZP_06149771.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
gi|268685075|ref|ZP_06151937.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
gi|268687339|ref|ZP_06154201.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
gi|291042974|ref|ZP_06568712.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
gi|293398318|ref|ZP_06642509.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
gi|639480|gb|AAC43469.1| PilG [Neisseria gonorrhoeae]
gi|59718889|gb|AAW90294.1| pilus assembly protein [Neisseria gonorrhoeae FA 1090]
gi|193934841|gb|ACF30665.1| PilG [Neisseria gonorrhoeae NCCP11945]
gi|226513583|gb|EEH62928.1| pilus-assembly protein [Neisseria gonorrhoeae 1291]
gi|268548958|gb|EEZ44376.1| pilus assembly protein pilG [Neisseria gonorrhoeae 35/02]
gi|268551392|gb|EEZ46411.1| pilus assembly protein pilG [Neisseria gonorrhoeae FA19]
gi|268583986|gb|EEZ48662.1| type IV pilus assembly protein [Neisseria gonorrhoeae MS11]
gi|268586321|gb|EEZ50997.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID18]
gi|268588586|gb|EEZ53262.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID1]
gi|268623193|gb|EEZ55593.1| type IV pilus assembly protein [Neisseria gonorrhoeae PID332]
gi|268625359|gb|EEZ57759.1| type IV pilus assembly protein [Neisseria gonorrhoeae SK-92-679]
gi|268627623|gb|EEZ60023.1| pilus-assembly protein [Neisseria gonorrhoeae SK-93-1035]
gi|291013113|gb|EFE05082.1| pilus assembly protein pilG [Neisseria gonorrhoeae DGI2]
gi|291611242|gb|EFF40326.1| type IV pilus assembly protein PilC [Neisseria gonorrhoeae F62]
gi|317165047|gb|ADV08588.1| PilG [Neisseria gonorrhoeae TCDC-NG08107]
Length = 410
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ + AF N L+ + G + L L +
Sbjct: 111 EIRGQVEQGSSLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQ 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 166 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 208
>gi|323359116|ref|YP_004225512.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
gi|323275487|dbj|BAJ75632.1| Flp pilus assembly protein TadB [Microbacterium testaceum StLB037]
Length = 300
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
D +R A L S R G G+ LR R E + AA L +L +P+ +
Sbjct: 217 DDDDLRRAEATLDLSLRAGVPAGELLRGDAWLARRAARTEGREAAARLSTRLLLPLGVCT 276
Query: 307 LPVLILVIIGPAILSIIDT 325
LP +L+ + P ++ ++ +
Sbjct: 277 LPAFLLLAVAPLLIGVLRS 295
>gi|169834864|ref|YP_001715936.1| type II secretion system protein F [Clostridium botulinum A3 str.
Loch Maree]
gi|169408971|gb|ACA57381.1| bacterial type II secretion system protein F domain [Clostridium
botulinum A3 str. Loch Maree]
Length = 308
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 42/286 (14%), Positives = 95/286 (33%), Gaps = 44/286 (15%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
LA++ A+S+F ++ K+ + ++ +
Sbjct: 5 VLLAISFLLAISLFIFFMCFILY----------------------KEYRVNKIQNDLKRQ 42
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L + K + +K N + E I K AG ++ I + +
Sbjct: 43 LADKSRKEKFSILKFFN----INIEKIERKFLKAGINADVENIIFSYLLIAT-------- 90
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ ++ L + I++G +G+ +I + R I + + +AL +
Sbjct: 91 ---LILIIGIIINNTILSLIVPIVLGSIGY----AYIEHKGTNRVIEINKQFINALIDIG 143
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ ++ A++ V +I PL E + I E+ N ++F R V
Sbjct: 144 DYLRIDSNLSNAIKNVTPNIA---YPLKGEFIYIIKEIDSNTNILDTLKHFDYRVNSTVV 200
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+++ ++ ++ D ++ R + A G K
Sbjct: 201 NTWVDSMLFANDKRANVSDLCIKHSAKVRKRLTQNEKLNAKLSGLK 246
>gi|297619916|ref|YP_003708021.1| Type II secretion system F domain-containing protein [Methanococcus
voltae A3]
gi|297378893|gb|ADI37048.1| Type II secretion system F domain protein [Methanococcus voltae A3]
Length = 354
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 33/215 (15%), Positives = 75/215 (34%), Gaps = 17/215 (7%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ AG E L ++ ++ I + + +I + ILI
Sbjct: 108 RRDYQYAGIDDER----LYFLKAIMTSIIVSVFLIVFETVFGNFIGGVLNGLTFFILIML 163
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
P + ++ + + I + +L SG S+ ++++ +A++ +
Sbjct: 164 GSIFYPKIKLTLFKGEIKIQILMTLLHIISML----NSGASVQESIKNIADN--PEYGIP 217
Query: 219 SEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
S E I +++ + + A E RT+++ ++ LI S G + L L
Sbjct: 218 SYEFRNIIKDINNGGYSFEGALERARTRTKVNLMKELYSQLIISSSKGGT-QLLLENLYK 276
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIF---FLPV 309
+ R ++ +A ++ LP
Sbjct: 277 DI--VRSSMSKIDSAKFQIGNLGNLVFGAGLILPF 309
>gi|288931900|ref|YP_003435960.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288894148|gb|ADC65685.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 634
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 45/297 (15%), Positives = 107/297 (36%), Gaps = 11/297 (3%)
Query: 13 ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRL 72
E+ VA+ +FSLI VV+ +G + V + I + ++
Sbjct: 255 EIYVAMLIVAPLFSLIVFVVMNMIGESTINLMKAMVYLYIPIGGLFFVYLVKSSKLLEEK 314
Query: 73 RTRDSKSLRNFVKKL---NLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
+ R + ++ + IV ++ A E ++ + +R I L
Sbjct: 315 KWRGESVVEVYLHATVNGKSSRLKRKSGIVVFMKRASKWLERAIKMRAFLRNPKLIFLLS 374
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +F + + +I + + + S ++K +++ PD L
Sbjct: 375 IPAAAVFAAVFFKVMKMESLLTFSFVIATLPYVLLYEYRSYKLRK----LEKHLPDFLRG 430
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L ESG++I A++ ++ Q L+EE+ ++ + A E F +R
Sbjct: 431 LGSLNESGLNIVTAIKVLS---ATQLGVLTEEVRKIRKDIEWGRLVTEALERFEDRVGSS 487
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V + ++ +++ ++ ++ L E+ ++ + + + F
Sbjct: 488 LVSKVVSIINKALMATSNVKAAILAAAADV-ELLLDFRERLKNAMFTYMVIIYVTFA 543
>gi|304386512|ref|ZP_07368800.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
gi|304339341|gb|EFM05413.1| 3-isopropylmalate dehydrogenase [Neisseria meningitidis ATCC 13091]
Length = 410
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L +
Sbjct: 111 EIRGEVEQGSSLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQ 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 166 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 208
>gi|639482|gb|AAA85695.1| PilG [Neisseria meningitidis]
Length = 410
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L + +G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMINAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ + AF N L+ + G + L L +
Sbjct: 111 EIRGQVEQGSSLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQ 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 166 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 208
>gi|159905295|ref|YP_001548957.1| type II secretion system protein [Methanococcus maripaludis C6]
gi|159886788|gb|ABX01725.1| type II secretion system protein [Methanococcus maripaludis C6]
Length = 352
Score = 45.2 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 34/209 (16%), Positives = 75/209 (35%), Gaps = 14/209 (6%)
Query: 99 VNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGY 158
+ AG + + +++++ I ++ I + + ++I
Sbjct: 106 KRDYQYAGI----ADERVYFLKMIITSITTVILFIIYGVLTGNIFSGLSNGILLAVIIVV 161
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G P + ++ + IK ++ L+ + SG SI +AL+ +A + +
Sbjct: 162 GGIFYPKLKLTLF----RGEIKIQVLMSILHLISMLNSGASIQEALKNIANN--PEYGIT 215
Query: 219 SEEMLLTIAELSFLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVS 277
S E I +++ N A E RT++ +R LI + G + L L +
Sbjct: 216 SFEFRSIIKDINQGGYNFVEALERARVRTKIFLMRQLYDQLILAANKGGT-QLLLENLYN 274
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFF 306
E R ++ ++ +I
Sbjct: 275 EI--VRESISKIDSSKFQISNLGNLIFGI 301
>gi|153956469|ref|YP_001397234.1| hypothetical protein CKL_3886 [Clostridium kluyveri DSM 555]
gi|146349327|gb|EDK35863.1| Hypothetical protein CKL_3886 [Clostridium kluyveri DSM 555]
Length = 289
Score = 45.2 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 36/268 (13%), Positives = 97/268 (36%), Gaps = 18/268 (6%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + + ++R + + K+ + N L+A G E + +
Sbjct: 37 TTRAEKKAARSLETYLMTWAVKLSKVIRMDEYRRHRLKNVLKATGMNMEPEVYQAYALVK 96
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I+ L + + F L V V+ + + + + + +++S+++
Sbjct: 97 SGVILLLTVPA----------GFVFPLLVPVVVFLAVMVYFKETKKADERLSAKRASVEK 146
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P + + +++ + + ++ G + E+ + A++ + + A
Sbjct: 147 ELPRFVANIEQELKASRDVLAIVENYKKNAGEA---FAGELTMLAADMRS-SSYEAALTR 202
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL--- 298
F R + + + LI R G ++L + + L + +A + PK+
Sbjct: 203 FEARLNSPMLSDVVRGLIGVLR-GDDSTVYFQMLTHDFKQLELQRLKSEAQKIPPKIRVF 261
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ M++ FL +++I I S+
Sbjct: 262 SFLMLMCFLFTYLVIIAYEIIKSLGGMF 289
>gi|307265042|ref|ZP_07546603.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306920027|gb|EFN50240.1| Type II secretion system F domain protein [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 249
Score = 45.2 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 62/179 (34%), Gaps = 3/179 (1%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ + IG + + P AL++ + +E G++ + + +
Sbjct: 71 VFALFSVFIGSAIMFYQYWRSPIESYRESFYKEEELPAALEVFISGLEVGMNKENIIGYI 130
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
G L E + + + A +++ D + +A+
Sbjct: 131 VRTRKGVVRDLLYE---AQVRIDTGSSLKDALTFAADKSLNDHFKRFVKAVTGEYESVKD 187
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ ++L L+ E + ++A +L L P+ + + ++++ P ++S+
Sbjct: 188 MRENLEELLEEVEERNYNQKIERAGTLDNSLFFPIFLGYFVPILVMFALPFVISLRSFF 246
>gi|167957566|ref|ZP_02544640.1| pilin biogenesis protein [candidate division TM7 single-cell
isolate TM7c]
Length = 410
Score = 45.2 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 47/140 (33%), Gaps = 8/140 (5%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++ + L + +G+ + ++L + E ++ + + ++ +
Sbjct: 61 RNVKQDELSIFTRQLSTMINAGVPLTRSLNSLQEH--TENPVFRDTLDSVKGDVESGVSL 118
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK-AASL 294
A + ++++ + + L L + + + K A +
Sbjct: 119 ADALGKHPK-----VFSDIYVNMVRAGEAAGILDEVLNRLAVQQEKSATIRKKIKSAMTY 173
Query: 295 GPKLTVPMIIFFLPVLILVI 314
L V ++ F ++I VI
Sbjct: 174 PVVLVVISVLAFFGLMIFVI 193
>gi|171186311|ref|YP_001795230.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
gi|170935523|gb|ACB40784.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
Length = 262
Score = 45.2 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ +LV R+S + + L +LL + +G+ + +A+ R+AE + ++ E+ L
Sbjct: 67 YPVHLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRY--IARELALAA 124
Query: 227 AELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E+ + + A N R R + L ++ R + L + + +
Sbjct: 125 REMVVMGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQV 184
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
A+ SL V ++ L +++ I+ +
Sbjct: 185 RAQSLVRSLSLMFEVFVVAVMLLPIMVYIVALSF 218
>gi|325132888|gb|EGC55565.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M6190]
gi|325138873|gb|EGC61423.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis ES14902]
Length = 410
Score = 45.2 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L +
Sbjct: 111 EIRGEVEQGSSLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQ 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 166 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 208
>gi|256786941|ref|ZP_05525372.1| integral membrane protein [Streptomyces lividans TK24]
Length = 267
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ + + AE+ A+ + + L +++ G + L
Sbjct: 152 GPVGDALGRGAAEVRLGGEPAGAWRGLA---AVPGAVPLARLLERAEVSGLPAAGPVARL 208
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++ +A +T P+ + FLP I V + P ++
Sbjct: 209 AAQARADWARTTTVRARRAAVMVTAPVGLCFLPAFIAVGVLPVVI 253
>gi|78484597|ref|YP_390522.1| general secretion pathway protein F [Thiomicrospira crunogena
XCL-2]
gi|78362883|gb|ABB40848.1| Type II secretion pathway protein F [Thiomicrospira crunogena
XCL-2]
Length = 404
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + +G+ + ALR VA ++ + ++S + A +
Sbjct: 67 LSLMTRQIFTLLGAGMPMADALRSVAN--QAENKLMKRFATGIFEKVSEGHSYAQALTSS 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
A +++ + + L + + + + ++A + P L V M
Sbjct: 125 GFNLP-----RDYVATVRAGEESGHLVEVLSRMAESIEKQEKIRKKMRSALIYPTLMVVM 179
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKDH 329
+ + L+ ++ P ++S+ D M +
Sbjct: 180 AVAIILFLMAFVV-PKVVSVFDNMNQN 205
>gi|45357602|ref|NP_987159.1| hypothetical protein MMP0039 [Methanococcus maripaludis S2]
gi|45047162|emb|CAF29595.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 352
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 70/194 (36%), Gaps = 10/194 (5%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ +++++ I ++ I + V +++ P + ++
Sbjct: 117 ERVYFLKMMIAAITTVVLFIIYGVLTGDVFSGVSNGVLLAVIMVVGSIFYPKLKLTLF-- 174
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ IK ++ L+ + SG S+ ++L+ +A + + S E I +++
Sbjct: 175 --RGEIKIQVLMSILHLISMLNSGASVQESLKNIANN--PEYGITSFEFRSIIKDINQGG 230
Query: 234 -NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N A E RT++ +R LI + G + L L +E R ++ ++
Sbjct: 231 YNFVEALERAKMRTKIHIMRQLYDQLILAANKGGT-QLLLENLYNEI--VRESMSKIDSS 287
Query: 293 SLGPKLTVPMIIFF 306
+I
Sbjct: 288 KFQISNLGNLIFGI 301
>gi|282165241|ref|YP_003357626.1| hypothetical protein MCP_2571 [Methanocella paludicola SANAE]
gi|282157555|dbj|BAI62643.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 282
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 24/205 (11%), Positives = 69/205 (33%), Gaps = 2/205 (0%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV-GAVILIGYVGFCAPSVWISNLVQKR 175
+ L+ I ++ ++I + V + +L G F A S + + R
Sbjct: 40 AALTLIASIAAVVASGLYIILSGMYADPLVLAVVPVSGVLTGVATFYARSYTVRSNKDYR 99
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPN 234
+ I + + +L ES + + + + ++ ++ E ++ + +
Sbjct: 100 GALIDASIVHVIGFMLTMAESNVPLKKMFQNISNLGDVYGEDVALEATYILSLVEEDGMD 159
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A + + + + + G S+ + LR + M+ K S+
Sbjct: 160 VVSALRLAQSTSPSIAWQELLIGIAEVYGSGGSLKEYLRGKYQAFTERKRMDMRKFNDSV 219
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAI 319
++ + + + + + +I
Sbjct: 220 QGLSSIYLSLVGIASIFVSLINLVF 244
>gi|172035334|ref|YP_001801835.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
gi|171696788|gb|ACB49769.1| pilin biogenesis protein [Cyanothece sp. ATCC 51142]
Length = 404
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 53/142 (37%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L +A+ + L + +L AE+ + A +
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLAD--QATNPKLKKALLAISAEVQQGVSLSEALGKHEDC 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++++ G + + L L ++ + K+A P +TV ++
Sbjct: 127 -----FDQLYVSMVEAGETGGVLDEVLNRLAKLLEDMARLQNQIKSAMAYP-VTVGILAV 180
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ + + + P I + +
Sbjct: 181 IVFFAMTIFLIPVFAGIFEDLG 202
>gi|238020907|ref|ZP_04601333.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
gi|237867887|gb|EEP68893.1| hypothetical protein GCWU000324_00804 [Kingella oralis ATCC 51147]
Length = 427
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 58/159 (36%), Gaps = 8/159 (5%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
Q+++ L +++G+ + QA VA+ G + ++ +L
Sbjct: 75 KMKKQRQKKITSADIAVFTRQLSTMMKAGLPLMQAFDIVAK--GHSNAAMTNLLLDVKNS 132
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ + +F L+ + G + L L + + ++ +
Sbjct: 133 VEQGNSLASSFSQHPKY-----FDKFYCNLVAAGEAGGVLEGLLDKLATYMEKTQAIKKK 187
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
K+A L + V ++ L +++++ + P+ I + +
Sbjct: 188 VKSA-LTYPIAVIVVAIVLILVMMMFVLPSFKKIYEGLG 225
>gi|325143047|gb|EGC65398.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis 961-5945]
Length = 402
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 45 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 102
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L +
Sbjct: 103 EIRGEVEQGSSLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQ 157
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 158 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 200
>gi|16081664|ref|NP_394034.1| flagellar assembly protein J [Thermoplasma acidophilum DSM 1728]
gi|10639728|emb|CAC11700.1| hypothetical membrane protein [Thermoplasma acidophilum]
Length = 551
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 46/154 (29%), Gaps = 6/154 (3%)
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ I + I + + + L + ++ +G F + R++ I
Sbjct: 20 LSIIAGSAVLSIMFYLIYYMTKKTVILLLFVMLALGAAFFFLKPII---DRDNRKNDINS 76
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFE 240
P + S +I + L +++ L +E+ + + + A
Sbjct: 77 NIPFFITAFSSLATSDANIIEVLDILSKKEKLGY--LRKELEKILNLVRNWGMGLAEAMS 134
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
RT D + + G I + R
Sbjct: 135 FVAKRTPSDIFSDFLTRFGHAIDSGQDIQEFART 168
>gi|254478362|ref|ZP_05091741.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
12653]
gi|214035720|gb|EEB76415.1| hypothetical protein CDSM653_1507 [Carboxydibrachium pacificum DSM
12653]
Length = 249
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 64/179 (35%), Gaps = 3/179 (1%)
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRV 207
+ + IG + + P AL++ + +E G++ + + +
Sbjct: 71 ILALFSVFIGSAIMFYQYWRKPIDSYRESFYREEELPAALEIFISGLEVGMNKENIISYI 130
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
G L E + L + + A +++ D R +A+
Sbjct: 131 VRTREGVVRDLLYEAQI---RLDTGSSLKDALTFAADKSLNDHFRRFVKAITGEYESVKD 187
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ ++L L+ E + + ++AA L L P+ + + ++++ P ++S+
Sbjct: 188 MRENLEELLEEVEEKNYNQKIERAAVLDNSLFFPIFLGYFVPILIMFALPFVISLRSFF 246
>gi|15676248|ref|NP_273382.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
gi|121635531|ref|YP_975776.1| pilus-assembly protein [Neisseria meningitidis FAM18]
gi|161870737|ref|YP_001599910.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
gi|218768891|ref|YP_002343403.1| pilus-assembly protein [Neisseria meningitidis Z2491]
gi|254805632|ref|YP_003083853.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
gi|7225553|gb|AAF40776.1| pilus assembly protein PilG [Neisseria meningitidis MC58]
gi|120867237|emb|CAM11006.1| pilus-assembly protein [Neisseria meningitidis FAM18]
gi|121052899|emb|CAM09251.1| pilus-assembly protein [Neisseria meningitidis Z2491]
gi|161596290|gb|ABX73950.1| type IV pilus assembly protein [Neisseria meningitidis 053442]
gi|254669174|emb|CBA07900.1| type IV pilus assembly protein [Neisseria meningitidis alpha14]
gi|254670164|emb|CBA05222.1| pilus assembly protein PilC [Neisseria meningitidis alpha153]
gi|254672314|emb|CBA05441.1| pilus assembly protein PilC [Neisseria meningitidis alpha275]
gi|261391858|emb|CAX49317.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis 8013]
gi|308388541|gb|ADO30861.1| pilus-assembly protein [Neisseria meningitidis alpha710]
gi|316984335|gb|EFV63309.1| pilin biogenesis protein [Neisseria meningitidis H44/76]
gi|319411192|emb|CBY91597.1| type IV pilus biogenesis protein PilG [Neisseria meningitidis WUE
2594]
gi|325128919|gb|EGC51773.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis N1568]
gi|325134914|gb|EGC57546.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M13399]
gi|325136908|gb|EGC59505.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M0579]
gi|325140982|gb|EGC63488.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis CU385]
gi|325145128|gb|EGC67410.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M01-240013]
gi|325199527|gb|ADY94982.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis H44/76]
gi|325202847|gb|ADY98301.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M01-240149]
gi|325208840|gb|ADZ04292.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis NZ-05/33]
Length = 410
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 53 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 110
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L +
Sbjct: 111 EIRGEVEQGSSLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQ 165
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 166 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 208
>gi|88858845|ref|ZP_01133486.1| type II secretion system protein [Pseudoalteromonas tunicata D2]
gi|88819071|gb|EAR28885.1| type II secretion system protein [Pseudoalteromonas tunicata D2]
Length = 400
Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 56/144 (38%), Gaps = 12/144 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +ESG+ ID+ + + + L++ + + N A
Sbjct: 64 LEFLTAELSLLLESGVKIDRGIDIIRKT--KAKPALAKLLNELNQSIKKGNNLSDAC--- 118
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R + LI+ ++ + L + + +R + ++ ++ LT P
Sbjct: 119 --REHPEVFDELYCNLIELGEASGNLSEIFADLAKDLKFKRDLRSKIISS-----LTYPS 171
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+IFF+ +L +V I I+ + +M
Sbjct: 172 VIFFVCILSIVFIFNFIIPKMSSM 195
>gi|205374338|ref|ZP_03227136.1| hypothetical protein Bcoam_14529 [Bacillus coahuilensis m4-4]
Length = 403
Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 54/147 (36%), Gaps = 8/147 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ L +E+G+++ A + ++E +S PL + ++ E+ A
Sbjct: 62 QHMVIFLRQFATLLEAGVTVVDATKILSE--QTESKPLRKALIEVEKEIRDGNPISDALS 119
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
++++ S+ ++L +L + + + +A P V
Sbjct: 120 QHKK-----IFEPMFVNMMRAGEATGSLDETLNMLAVHYEKQYQTKQKIVSALAYP-AVV 173
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
+I + + +LV + P + + D
Sbjct: 174 GLIAIGVVIFLLVAVVPTFVGMFDDFG 200
>gi|294813377|ref|ZP_06772020.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326441910|ref|ZP_08216644.1| type II secretion system F protein [Streptomyces clavuligerus ATCC
27064]
gi|294325976|gb|EFG07619.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 295
Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ + +GI AL A G + L A F + A D
Sbjct: 124 VAAELRAGIQPGPALLSAA----GATDALGTAGAPVGAAARFGGDVPRALREAAREPGAD 179
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + G + +L L R++R E +A G + TV
Sbjct: 180 GLAGVAACWRVAVDGGAGLAAALDRLEEALRADRDQREELRAQLAGARATV 230
>gi|296394989|ref|YP_003659873.1| type II secretion system F domain-containing protein [Segniliparus
rotundus DSM 44985]
gi|296182136|gb|ADG99042.1| Type II secretion system F domain protein [Segniliparus rotundus
DSM 44985]
Length = 192
Score = 44.8 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
++ + + DLL + + +G+ A+R VA+ PL+ + + L+
Sbjct: 40 RRTARLDQLGLAASYDLLAVSLRAGLPTSVAMRAVAQ---SAPEPLAGALAKAASLLALG 96
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A+E ++ + I+S R GT++ + L L S R+E L +A +A+
Sbjct: 97 AGPRTAWEEAA---ALEVTAPLARMAIRSARSGTALAEGLGELASGARAEALDQAAAEAS 153
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
L P+ + FLP + + P I+ +
Sbjct: 154 RAAVLLAGPLGLCFLPAFFCLGVMPVIVGL 183
>gi|81300878|ref|YP_401086.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
7942]
gi|81169759|gb|ABB58099.1| fimbrial assembly protein PilC-like [Synechococcus elongatus PCC
7942]
Length = 410
Score = 44.8 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 12/138 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L V++G+ I +AL + E ++ L + + ++ N + F
Sbjct: 70 MALFSRQLSSLVDAGVPIVRALGLLTE--QTRNPKLRKTLKQINIDVQEGLNLSDSMRKF 127
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
A+IQ+ G + D L L + + K+A +T PM
Sbjct: 128 PK-----VFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSA-----MTYPM 177
Query: 303 IIFFLPVLILVIIGPAIL 320
+F + +L+ + + I+
Sbjct: 178 AVFVIAILVFLGMTIFII 195
>gi|322688314|ref|YP_004208048.1| hypothetical protein BLIF_0123 [Bifidobacterium longum subsp.
infantis 157F]
gi|322690325|ref|YP_004219895.1| hypothetical protein BLLJ_0133 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320455181|dbj|BAJ65803.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459650|dbj|BAJ70270.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 98
Score = 44.8 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
+ AL S +G G L + + + E+ AA L KL +P + FLP
Sbjct: 23 RDLGLLQSALESSWTHGDMPGVRLESAIEQLDRDERAAIERNAAKLSVKLLMPTGLCFLP 82
Query: 309 VLILVIIGPAILSII 323
+LV + PAI S +
Sbjct: 83 AFVLVGVIPAIASFM 97
>gi|292654912|ref|YP_003534809.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291370705|gb|ADE02932.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 587
Score = 44.8 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 48/333 (14%), Positives = 98/333 (29%), Gaps = 41/333 (12%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
+S F+ + P+L + + E R + S
Sbjct: 169 AGLSAFADAWRAWFPALDRSTALLQTAADVPAGERDRALDRAHEVVREGTRDRLADFVGS 228
Query: 80 LRNFVKKLNLKAILVDENIVNKL---RAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIF 136
+R V + +L+ +V L R AG + + + + +G + +
Sbjct: 229 VRGPVTAVYAFGVLLPLALVGALPAARVAGVGVTAAHVAFVYDVALPACLLAAVGWVLVR 288
Query: 137 GYDKLLEYPF-----------QLRVGAVILIGYVGFCAPSVWISNLV------------- 172
L V + G VGF A ++ +
Sbjct: 289 RPVAFAPLSVDASHPAVDDHRLLGVAGGAVAGIVGFVAADALVAPWLAPLAAAGLGTGTA 348
Query: 173 -----------QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
+ R +++ PDAL L+ V G +++ AL R A + G++ L +E
Sbjct: 349 LFVAARPVVVLRARVRAVEDGLPDALYLVGRAVSEGEAVESALARAATSVPGETGDLLDE 408
Query: 222 MLLTIAELSFLP--NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ L + + + T V L + G G ++ + +
Sbjct: 409 AVGVQRRLRVGVVESFRGEYGVL-ESTPGPRVAGVATLLGLAASEGRPAGRAIVSMADQL 467
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ ++AE + T+ L+
Sbjct: 468 SALARLDAEARRELASVTETLSNTAAVFGPLVA 500
>gi|297201341|ref|ZP_06918738.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|197712796|gb|EDY56830.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 312
Score = 44.8 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 56/196 (28%), Gaps = 17/196 (8%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
LG W L+ V V+ V ++ ++ + L
Sbjct: 67 LGFEWWAVAAGLVLAVLGASVLPVVAAAAGVPLLRRVRLAREERRVRERRAAEVIALCAL 126
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVP----------------LSEEMLLTIAELSFLP 233
+ V +G +AL R D G E +A F
Sbjct: 127 VAGEVRAGRQPGEALVRAVRDFEGPGRAGAGSGGSGLAAPEAGGFGETQASVLAAARFGG 186
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A R + + + G + L L R+ER A+ +A
Sbjct: 187 DVPGALAAAARRPGAEGLLGLAACWRVAVDQGAGLAAGLDRLEGALRAERDQRADLRAQL 246
Query: 294 LGPKLTVPMIIFFLPV 309
G + TV ++ LPV
Sbjct: 247 AGARSTV-WMLAALPV 261
>gi|219856773|ref|YP_002473895.1| hypothetical protein CKR_3430 [Clostridium kluyveri NBRC 12016]
gi|219570497|dbj|BAH08481.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 292
Score = 44.8 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 36/268 (13%), Positives = 97/268 (36%), Gaps = 18/268 (6%)
Query: 62 SLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRL 121
+ + + ++R + + K+ + N L+A G E + +
Sbjct: 40 TTRAEKKAARSLETYLMTWAVKLSKVIRMDEYRRHRLKNVLKATGMNMEPEVYQAYALVK 99
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
I+ L + + F L V V+ + + + + + +++S+++
Sbjct: 100 SGVILLLTVPA----------GFVFPLLVPVVVFLAVMVYFKETKKADERLSAKRASVEK 149
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P + + +++ + + ++ G + E+ + A++ + + A
Sbjct: 150 ELPRFVANIEQELKASRDVLAIVENYKKNAGEA---FAGELTMLAADMRS-SSYEAALTR 205
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL--- 298
F R + + + LI R G ++L + + L + +A + PK+
Sbjct: 206 FEARLNSPMLSDVVRGLIGVLR-GDDSTVYFQMLTHDFKQLELQRLKSEAQKIPPKIRVF 264
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ M++ FL +++I I S+
Sbjct: 265 SFLMLMCFLFTYLVIIAYEIIKSLGGMF 292
>gi|254252517|ref|ZP_04945835.1| Type II secretion system protein [Burkholderia dolosa AUO158]
gi|124895126|gb|EAY69006.1| Type II secretion system protein [Burkholderia dolosa AUO158]
Length = 303
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 7/200 (3%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSE 110
+ + R R R V + N A I AA
Sbjct: 2 RSAFIDSPARAGRTRGGRLLRPRARQPPGAPRPVAQQNAAATRSSGPIGAHGYAAAAEYL 61
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISN 170
++ + +L ++ F A+ L G + W+++
Sbjct: 62 SNVASRAGIDDARGKALAVLAVLIAFAAIAGSHGGLLACFAALALGGAIVGV----WLAS 117
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+Q+R+ I R P LD ++ V G S+ A + + PL + L
Sbjct: 118 RIQRRRLKIVRQIPSFLDGIVRLVTLGNSVPAAFQ---SALLTTEEPLRSCLDDVSRMLR 174
Query: 231 FLPNRQVAFENFYNRTQMDC 250
A + + D
Sbjct: 175 GGVEIDRAMMHVAKVYRTDE 194
>gi|325130912|gb|EGC53641.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis OX99.30304]
gi|325198977|gb|ADY94433.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis G2136]
gi|325203446|gb|ADY98899.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M01-240355]
gi|325205410|gb|ADZ00863.1| Bacterial type II secretion system protein F domain protein
[Neisseria meningitidis M04-240196]
Length = 402
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + L +++G+ + QA VA G + ++E ++
Sbjct: 45 PLQITRVKTSSKRKITQEDITVFTRQLSTMIKAGLPLMQAFEIVAR--GHGNPSMTEMLM 102
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
E+ + AF N L+ + G + L L +
Sbjct: 103 EIRGEVEQGSSLSRAFSNHPKY-----FDRFYCNLVAAGETGGVLESLLDKLAIYKEKTQ 157
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A P + + I + V+++ ++ PA + M
Sbjct: 158 AIRKKVKTALTYPVSVIAVAIGLVFVMMIFVL-PAFKEVYANMG 200
>gi|218441093|ref|YP_002379422.1| type II secretion system protein [Cyanothece sp. PCC 7424]
gi|218173821|gb|ACK72554.1| type II secretion system protein [Cyanothece sp. PCC 7424]
Length = 404
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 45/130 (34%), Gaps = 10/130 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L +++ + L + + A++ A +
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSD--QSGNKKLKKALASISADVQQGSPLSDAMGKHPDC 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL---GPKLTVPM 302
++I++ G + + L L ++ + K+A + +
Sbjct: 127 -----FDQLYVSMIEAGETGGVLDEVLDRLAKLLEDMARLQNQIKSAMAYPVAVGMLAVI 181
Query: 303 IIFFLPVLIL 312
+ F + + ++
Sbjct: 182 VFFAMTIFLI 191
>gi|289177985|gb|ADC85231.1| Hypothetical membrane associated protein [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 227
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 6/143 (4%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L LL + G++I +AL + GG ++ + A L A+ +
Sbjct: 88 LLQLLEAAIAQGVAIPRALECIGACCGGAC---AQVLGHVSAALLRGVCWDEAWAVLEHD 144
Query: 246 TQMDC---VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ A + L + G S + + + E++A+ L +L +PM
Sbjct: 145 GSSPASSALGLACRTLRAAWEDGVSPLPQIHAAIEQMDGSERARIEQRASRLSVRLLLPM 204
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
+ LP +L+ + P I+S +
Sbjct: 205 GLCLLPAFLLIAVVPTIMSFMRM 227
>gi|229494799|ref|ZP_04388555.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
gi|229318295|gb|EEN84160.1| bacterial type II secretion system protein F domain protein
[Rhodococcus erythropolis SK121]
Length = 189
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LDLL C+ +G+ + A+ +A P+++ + L+ + A+
Sbjct: 50 LDLLGACLRAGLPVSAAITAMAS---TAPKPMADSLRRVADLLALGADPDAAWSEAALDP 106
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + +S +S+ S+ L +R + A A G ++ P+ + F
Sbjct: 107 DTEALARMARRSARSG---SSLSSSMAELAERSRGDAEDLAAAAAERAGVLISGPLGLCF 163
Query: 307 LPVLILVIIGPAILSIIDT 325
LP I + I P ++ + T
Sbjct: 164 LPAFIALGIVPVVIGLATT 182
>gi|223940083|ref|ZP_03631947.1| type II secretion system protein [bacterium Ellin514]
gi|223891268|gb|EEF57765.1| type II secretion system protein [bacterium Ellin514]
Length = 403
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L +++G+++ Q+L+ +AE + + + + A + + A
Sbjct: 63 LVIFTRQLATMLDAGLAMVQSLQALAE--QTTNKVMRDVIKDVTARVEAGDSFSEALVKH 120
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ + G + + L L + + + + K+A + P V
Sbjct: 121 PK-----VFNRLYVCMVGAGEKGGLLSEILARLATYLENAARLRRKVKSAMMYPT-VVTC 174
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+ + + ++V + P I ++
Sbjct: 175 VAISITIFLMVKVVPVFGEIFESFG 199
>gi|188590236|ref|YP_001921571.1| bacterial type II secretion system protein F domain [Clostridium
botulinum E3 str. Alaska E43]
gi|188500517|gb|ACD53653.1| bacterial type II secretion system protein F [Clostridium botulinum
E3 str. Alaska E43]
Length = 358
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 17/178 (9%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA--------LDLLLICVESGISID 201
+ I G P + I ++ +R S+ + + +L I V SG++I
Sbjct: 181 LFTFIYFLCWGVFIPFICIKRVMCERGISLLSNFKIFNKFLEYVIIFILSIIVNSGMNIS 240
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
L ++ + + E++ + A T + T A+I+
Sbjct: 241 YGLMYCSDSMNFNH--IGEKLNKINEGILRGGTLSEAI------TDTNIFSKYTIAVIRV 292
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
SIG++L+ L + L++ K SL + I + V ++ I P
Sbjct: 293 REESGSIGEALKELSVIL-EKSLIKRINKCLSLLQPFLIISISILVTVFFIIFIMPLF 349
>gi|126437754|ref|YP_001073445.1| type II secretion system protein [Mycobacterium sp. JLS]
gi|126237554|gb|ABO00955.1| type II secretion system protein [Mycobacterium sp. JLS]
Length = 192
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
D+L C+ SG+++ A A L+ + L+ + A+ +
Sbjct: 51 FDVLTACLTSGMAVSSAASAAAASAPTG---LAAILARAADMLALGADAATAWSDPGTPL 107
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
D R + +S GT++ + L +E+RS+ A A G + P+ + +
Sbjct: 108 D-DHARALMRLARRSAESGTALAQGVADLAAESRSDAADAARATAERAGVLIAAPLGVCY 166
Query: 307 LPVLILVIIGPAILSI 322
LP + + I P ++ +
Sbjct: 167 LPAFLCLGIVPVVVGL 182
>gi|158333616|ref|YP_001514788.1| type II secretion system domain-containing protein/ pilin
biogenesis protein PilC [Acaryochloris marina MBIC11017]
gi|158303857|gb|ABW25474.1| type II secretion system domain protein/ pilin biogenesis protein
PilC [Acaryochloris marina MBIC11017]
Length = 406
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 15/133 (11%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
V +G+++ + L ++E + L + +L A + + A R
Sbjct: 70 FSRQFSALVNAGVALVRGLGVMSEQCK--NPKLKKALLDVNAAVQQGVSLSDAM-----R 122
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL--------GPK 297
A+IQ+ G + + L L + + ++ + ++A
Sbjct: 123 GHPAAFDQLYVAMIQAGETGGVLDEVLNRLATLLEDQARLKNQIRSALAYPVVVGFIAVS 182
Query: 298 LTVPMIIFFLPVL 310
+ + M+IF +PV
Sbjct: 183 IFLGMVIFLIPVF 195
>gi|18976702|ref|NP_578059.1| flagellar assembly protein J [Pyrococcus furiosus DSM 3638]
gi|18892282|gb|AAL80454.1| flagella accessory protein [Pyrococcus furiosus DSM 3638]
Length = 568
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 70/210 (33%), Gaps = 6/210 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ L+ I+ ++ I + ++ P L+V ++ + F + + +
Sbjct: 16 PKEYMKKILIPGIVGSFATLLAIMIFTRIFTLPTGLKVFMYLIPIILMFYT-TAYPYLIA 74
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SF 231
++ +I P + + S I L+ +A+ + +++E+ + F
Sbjct: 75 DSKKIAINSKIPYFITYFAVLSTSEIGRSDLLKVMAQ--DPKLGAIAKELKKVYVLVDKF 132
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ AF RT + L S G + + L + E
Sbjct: 133 HRSLPEAFRFLARRTPSRVFADFLDRLAYSLDSGVELKEYLFQEQQTVMDDYQTFYEGAL 192
Query: 292 ASLGPKLTVP--MIIFFLPVLILVIIGPAI 319
L + +II + +IIGP I
Sbjct: 193 YDLDIFKEIYESIIISVVFAGAFIIIGPLI 222
>gi|119872897|ref|YP_930904.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
gi|119674305|gb|ABL88561.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
Length = 262
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ +LV R+S + + L +LL + +G+ + +A+ R+AE + ++ E+ L
Sbjct: 67 YPVHLVSARRSHFENNFVYTLSVLLPLLAAGVPLGRAVTRLAEVEDDRY--IARELALAA 124
Query: 227 AELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E+ + + A N R R + L ++ R + L + + +
Sbjct: 125 REMVVMGSSPEEALRNSAARVPSPTYRETVEVLTKAARITQRVDLVLLARLDWMLRAKQV 184
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
A+ SL V ++ L +++ I+ +
Sbjct: 185 RAQSLVRSLSLMFEVFVVAVMLLPIMVYIVALSF 218
>gi|229816771|ref|ZP_04447053.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
20098]
gi|229785787|gb|EEP21901.1| hypothetical protein BIFANG_02018 [Bifidobacterium angulatum DSM
20098]
Length = 448
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
L + +G S LR+ V+E E+ AA L +L P + FLP IL+
Sbjct: 378 IANCLEAAWHHGASPMAQLRLAVAEHERAERSAIEQSAARLSIQLLSPTGLCFLPAFILI 437
Query: 314 IIGPAILS 321
I PAI S
Sbjct: 438 GIIPAIAS 445
>gi|313835133|gb|EFS72847.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA2]
gi|314929111|gb|EFS92942.1| type II secretion system F domain protein [Propionibacterium acnes
HL044PA1]
gi|314970944|gb|EFT15042.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA3]
gi|328905819|gb|EGG25595.1| LOW QUALITY PROTEIN: type II secretion system F domain protein
[Propionibacterium sp. P08]
Length = 293
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LVGPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQ-ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A + F + ++ ++R GT +L L + + E +
Sbjct: 155 DTRSALQGFADDLNSADADQVIAATMMAAERGGTGATTTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|326441911|ref|ZP_08216645.1| hypothetical protein SclaA2_12644 [Streptomyces clavuligerus ATCC
27064]
Length = 274
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G + +A V + +GG P+ E +L A + A+ + +
Sbjct: 147 GAAPHEAAEAVGDSLGG---PVGERLLRACAAVRLGGEPGSAWGAVA---GLPGAAELAR 200
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L ++ G + + + R++R A +A +T P+ + FLP + V +
Sbjct: 201 CLARAHASGAPAAEPVARVAVRLRADRARAAAARARRAQVLITAPVGLCFLPAFLAVGVA 260
Query: 317 PAILSIIDTM 326
P ++ + D +
Sbjct: 261 PVVIGLADGL 270
>gi|309776912|ref|ZP_07671882.1| hypothetical protein HMPREF0983_02494 [Erysipelotrichaceae
bacterium 3_1_53]
gi|308915323|gb|EFP61093.1| hypothetical protein HMPREF0983_02494 [Erysipelotrichaceae
bacterium 3_1_53]
Length = 230
Score = 44.4 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 72/197 (36%), Gaps = 13/197 (6%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ ++L I KL E + + + + Y G+ P +W+ KR + + A
Sbjct: 32 MGLILLLGITGILMAKLSETTWLITIVCALCFSYAGYKLPWLWLKLKHNKRCTQMTDAVI 91
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
++ + + +I A+ E L +++ I +++ + A+ +F +
Sbjct: 92 IWVNTIYSLI-GENNIYNAITISYE---STPEILKKDLEEFIQQITLDHADKDAYLHFLS 147
Query: 245 RTQMDCVRNATQALIQSDRYG--------TSIGDSLRVLVSETRSERLMEAEKKAASLG- 295
+D ++ L + ++ +L + R R A +L
Sbjct: 148 GYDIDGFQDIMMKLYEYRGLSKEKLKYEIAALTKALSKIEKNKRERRYRNELFMADTLTM 207
Query: 296 PKLTVPMIIFFLPVLIL 312
+++P + F LIL
Sbjct: 208 IMMSIPCMYMFFVSLIL 224
>gi|299538323|ref|ZP_07051606.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
gi|298725910|gb|EFI66502.1| type II secretion system protein [Lysinibacillus fusiformis ZC1]
Length = 401
Score = 44.4 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 16/148 (10%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + +G+ + +A + E +S PL ++ ++ A
Sbjct: 64 FVIYCRQYATLIRAGVPVVEATHILGE--QTRSKPLKRALMQVEEDIRNGMAFSDAAGKH 121
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ ++++ ++ D+L L S + ++ + ++A +T P
Sbjct: 122 PKVFPL-----LFVNMMRAGEATGNVDDTLDRLASTLEKQYNIKKKIQSA-----MTYPA 171
Query: 303 IIFFLPV----LILVIIGPAILSIIDTM 326
I+ L + ++V I P + M
Sbjct: 172 ILSLLTLVVGMFLMVFIVPTFMDAFKEM 199
>gi|269955134|ref|YP_003324923.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
gi|269303815|gb|ACZ29365.1| type II secretion system protein [Xylanimonas cellulosilytica DSM
15894]
Length = 183
Score = 44.4 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 22/180 (12%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIK--------------RAWPDALDLLLICVESGI 198
+I + P + + + ++R +++ L+LL + +G
Sbjct: 1 MIAALGLLAVMPWLLVDRVARRRCAALAGVAPTGCSQDARPPVDVTVVLELLGAALRAGA 60
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ +A+ VA+ +GG + + L VA+E R + +AL
Sbjct: 61 GVPRAIETVAQAVGGADGA---ALARVASALRLGAAWTVAWEGVPPRLDV-----VARAL 112
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ G + G++L E R R A L +L +P+ FLP +LV + P
Sbjct: 113 RPAWDEGAAPGEALTAAGEELRRARRDATRTAAGRLAVQLVLPLGTCFLPAFVLVGLAPV 172
>gi|310642354|ref|YP_003947112.1| protein [Paenibacillus polymyxa SC2]
gi|309247304|gb|ADO56871.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 694
Score = 44.4 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 8/180 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRRVA 208
V I+ GYV + P + + + R +K ++ I +S+++ L +
Sbjct: 510 VLISIVAGYVAYQMPMLLLYLQRKMRYLDMKHEVYQFQTVISILRVMERMSVEEILEWLN 569
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
PL + + L + + A + + + L S T I
Sbjct: 570 RFSVIFKRPLQKCL------LHYEHGPEAALDLLKEEAPLPEFQRLVDKLYLSLGKIT-I 622
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
++ L S+ ++ + K +I F P+ L+ + I I +
Sbjct: 623 REAFDDLESQMTYYFEQRKQEYEKIIDSKAIWGRMIGFAPMYGLIFLYLVIPLIGMSFVQ 682
Score = 44.0 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 27/302 (8%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
L + + F+++Y V+ R + +E + + + + + +L
Sbjct: 7 LLWVLLISGGGFAVLYTVLYGLHKHKSYAVRRGRIHSVQEARKGKAVLQRELQTLMHKLY 66
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
T + ++ +L +++ + + + +I I GI
Sbjct: 67 TLCMRV---------PITSGYITSVRKRLA-----GQHAYDEYKLRLQTMKMILFIWGIF 112
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
G L+ P + IL G S+ I + + + + +
Sbjct: 113 VCSGVVLLMMKP---GIEFAILAVLCGVVINSLVIDVATSQMEKRLLSQMIELFANVRHH 169
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+++++ A+ G ++ + + + + + A E +Y ++
Sbjct: 170 YHQHGMVEESISEAADLAGAEAGRHARLIHEALTD----ADPHEALERYYESAPNRFLKA 225
Query: 254 ATQALIQSDRYGTSIGD----SLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+G + D L+ L S R +L + L L +I PV
Sbjct: 226 FAGISYMVMEFGDRVEDGGSIYLKGLSSLAREIQLELLRR--NKLDYLLKSLNVIALAPV 283
Query: 310 LI 311
Sbjct: 284 FF 285
>gi|294813376|ref|ZP_06772019.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|294325975|gb|EFG07618.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 256
Score = 44.4 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G + +A V + +GG P+ E +L A + A+ + +
Sbjct: 129 GAAPHEAAEAVGDSLGG---PVGERLLRACAAVRLGGEPGSAWGAVA---GLPGAAELAR 182
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
L ++ G + + + R++R A +A +T P+ + FLP + V +
Sbjct: 183 CLARAHASGAPAAEPVARVAVRLRADRARAAAARARRAQVLITAPVGLCFLPAFLAVGVA 242
Query: 317 PAILSIIDTM 326
P ++ + D +
Sbjct: 243 PVVIGLADGL 252
>gi|303239931|ref|ZP_07326454.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302592641|gb|EFL62366.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 404
Score = 44.4 bits (103), Expect = 0.025, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
++G++I +L + ++ L+ + ++ + A +
Sbjct: 65 LSVFCKQFYTMADAGVTIIGSLDLLRR--QTENRKLANILSKVYEDVQKGMSLSEAMK-- 120
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++I+ ++ L L + + ++ + K + + PK +
Sbjct: 121 ---VHKSEFPTIVISMIEIGEISGNLDTVLDRLATYLEKDNKVKQKIKTSMVYPKAIGGI 177
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
I + + +++ + P +++ M
Sbjct: 178 AIVAV-IFMMIFVVPNFITMFKGMG 201
>gi|258516391|ref|YP_003192613.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
gi|257780096|gb|ACV63990.1| type II secretion system protein [Desulfotomaculum acetoxidans DSM
771]
Length = 403
Score = 44.4 bits (103), Expect = 0.026, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 8/153 (5%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ N +QKR L + +GI + + L ++E ++ L+
Sbjct: 49 FLRNALQKRGKVKIGQLSFFSRQLSAMLTAGIPLTRGLYTLSE--QSENPVLARAAGEMA 106
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + A D +I++ G + + L L + E+++
Sbjct: 107 HAVEGGMSFSAAMSA-----HQDIFSKMYVDMIKAGEVGGMMEEMLNRLSMQLEREKILR 161
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
K+A+ P + + M + + ++ I P
Sbjct: 162 DNIKSATFYP-IIIIMFAGLVILCMMFFIVPIF 193
>gi|89098959|ref|ZP_01171839.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911]
gi|89086363|gb|EAR65484.1| hypothetical protein B14911_06316 [Bacillus sp. NRRL B-14911]
Length = 401
Score = 44.4 bits (103), Expect = 0.027, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 57/165 (34%), Gaps = 8/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ + + + L + +G+++ A +++ +S L + +
Sbjct: 44 IPETLLTKEISIGNPVKLQDFVIYLRQFATLLRAGVTVVDATGILSQ--QTESKALKKAL 101
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+L + A + +I++ G ++ D+L L +
Sbjct: 102 AAVEQDLREGNSLSDAAAKHKK-----VFTSMFVNMIKAGEAGGNMDDTLERLAVHYEKQ 156
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + +A P + V +I + + +LV + P + +
Sbjct: 157 HFTKQKIISALAYP-IAVGIIAVAVVIFLLVSVVPTFVEMFQDFG 200
>gi|119714035|ref|YP_919177.1| integral membrane protein [Nocardioides sp. JS614]
gi|119525944|gb|ABL79314.1| integral membrane protein [Nocardioides sp. JS614]
Length = 297
Score = 44.0 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 9/169 (5%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+ +I L +P A ++ V P + S ++K + A + +
Sbjct: 51 IALIVGVVVGILTRWPV-----AGLMAVAVVILWPKLARSGAIEKHSVAKIEAIANWTES 105
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L S ++QAL + G L + + L VA +F +
Sbjct: 106 LRDAAASESGLEQALPAT---LDGAPALLRRPLRNLVNALDLRTPLPVALAHFADEVDDR 162
Query: 250 CVRNATQALIQ-SDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
AL + + S+ L L S TR+E M + A G +
Sbjct: 163 GADKVVIALSLTAQQRAGSLKRVLTTLASNTRAELEMRRKVLAERNGVR 211
>gi|304315796|ref|YP_003850941.1| hypothetical protein Tthe_0282 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777298|gb|ADL67857.1| hypothetical protein Tthe_0282 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 297
Score = 44.0 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 79/232 (34%), Gaps = 17/232 (7%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
++I L +G + L + + I +IL + F + A +
Sbjct: 52 KSIDALLAQSGLKRRLP---FLNAKNMAAISLVILALSIYFFHSLGF---------AALF 99
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ P ++ L +K A+ L + +I AL+ A I
Sbjct: 100 YAFAVLYLPFAFMMFLSAVNAKKVKEAYLSFLTTFMGFYNIEGNIINALKSTAPYISNPL 159
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ E + + +N + + R S +YG + ++ L
Sbjct: 160 KSIIERNVFLFEKTQMNV--LECLDNMASEAGNNEFRKFINFAKMSVKYGGNFNKAIAKL 217
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG--PAILSIIDT 325
+ +EA K+A+ V +++ + +L++V I P I+ II +
Sbjct: 218 KDQGEKLYSLEA-IKSANASVGSFVILLMIVINLLLMVNISSDPDIVDIIKS 268
>gi|325262869|ref|ZP_08129605.1| hypothetical protein HMPREF0240_01858 [Clostridium sp. D5]
gi|324031963|gb|EGB93242.1| hypothetical protein HMPREF0240_01858 [Clostridium sp. D5]
Length = 500
Score = 44.0 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 8/216 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ ++ LG+ G L G +I+ P ++
Sbjct: 17 YLKRAVRRFGYQFSARKYAGYFLGL--YGGVAVLSFAFRLKLPGILIIAAAATCFVPGIF 74
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ + ++ +L + I AL L + + I
Sbjct: 75 AMTYRNLYEARLFEDVNAYMEQMLYSFKRRAKILTALEDTLVLFEEGESRLYDAVHRAIR 134
Query: 228 ELS---FLPNR-QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE--TRS 281
+ N + AF + LI+++ G + +L+++
Sbjct: 135 YIQNEDAGANLYREAFAIIEKEYGCRRLYKVHDFLIEAEAVGGDFTAAADILLNDRKLWM 194
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
+R+ E +++ ++ K+T+ + + FL + V++ P
Sbjct: 195 DRVYELQREKKNVKVKITIGIGLSFLICGMTVLMLP 230
>gi|311896986|dbj|BAJ29394.1| hypothetical protein KSE_35900 [Kitasatospora setae KM-6054]
Length = 360
Score = 44.0 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 48/163 (29%), Gaps = 2/163 (1%)
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR-RV 207
V V+ + + A D L + G + +QA+ +
Sbjct: 109 SVLPVLGAACGVVPLRRWRAARRTLRAARRRAAAVIDLCTGLAAELRGGATPEQAMHTVL 168
Query: 208 AEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
A L E +A + + A + S G+
Sbjct: 169 ARAAPEWGRRLGAEPAARLAAGRYGADLPAALRLVAELPGGEGAAAMAACWRVSTESGSG 228
Query: 268 IGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ D L + R+ER + E GP+ TV ++ LP +
Sbjct: 229 LADGLEQVAEALRAERALSEEIAGELAGPRTTVA-VLAVLPAV 270
>gi|251779219|ref|ZP_04822139.1| bacterial type II secretion system protein F [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243083534|gb|EES49424.1| bacterial type II secretion system protein F [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 358
Score = 44.0 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 17/178 (9%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA--------LDLLLICVESGISID 201
+ I G P + I ++ +R S+ + + +L I V SG++I
Sbjct: 181 LFTFIFFLCWGVFIPFICIKRVMCERGISLLSNFKIFNKFLEYVIIFILSIIVNSGMNIS 240
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
L ++ + + E++ + A T + T A+I+
Sbjct: 241 YGLMYCSDSM--NFHHIGEKLNKINEGILRGGTLSEAI------TDTNIFSKYTIAVIRV 292
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
SIG++L+ L + L++ K SL + I + V ++ I P
Sbjct: 293 REESGSIGEALKELSVIL-EKSLIKRINKCLSLLQPFLIISISILVTVFFIIFIMPLF 349
>gi|118471127|ref|YP_890387.1| type II secretion system protein F [Mycobacterium smegmatis str.
MC2 155]
gi|118172414|gb|ABK73310.1| bacterial type II secretion system protein F domain [Mycobacterium
smegmatis str. MC2 155]
Length = 189
Score = 44.0 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 4/136 (2%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
DL C+ +G+++ A PL++ ++ L+ + A+ + T
Sbjct: 48 FDLFAACLTAGMAVS---TAAAAAAHTAPTPLAQALIRASDLLALGADPMTAWSS-GVET 103
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
Q V + +S GT++ + L +++R + A+ A G + P+ + +
Sbjct: 104 QDKNVEALLRMARRSAASGTALAHGVSELAAQSRHDVAAAADAAAERAGVLVAGPLGLCY 163
Query: 307 LPVLILVIIGPAILSI 322
LP + + I P ++ +
Sbjct: 164 LPAFVCLGIVPVVVGL 179
>gi|326772540|ref|ZP_08231824.1| bacterial type II secretion system protein F domain-containing
protein [Actinomyces viscosus C505]
gi|326637172|gb|EGE38074.1| bacterial type II secretion system protein F domain-containing
protein [Actinomyces viscosus C505]
Length = 203
Score = 44.0 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 63/200 (31%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
L ++ + + P L + + + + +LV +R A +
Sbjct: 1 MACLPVVGLGLGMLVGADPASLLLDGGLGSAVGALGVGLMVVGHLVTRRLIRAATAEGEV 60
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+D L+ + ++ + E + L + A++ +
Sbjct: 61 VDEALVLDLAAAALSAGASVPGVLTALGAALEEEGAGVVGRALLLGAPWEEAWQAPEDEQ 120
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
L G S L + R+ R E+ A L +L +P+
Sbjct: 121 WRARRSRLESCLRPGWEDGASPAALLAATAASLRAGRHARDEEAAERLAVRLVLPLGACH 180
Query: 307 LPVLILVIIGPAILSIIDTM 326
LP +++ I P + S+ +M
Sbjct: 181 LPAFVILGIAPVVASVGMSM 200
>gi|56752033|ref|YP_172734.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
6301]
gi|56686992|dbj|BAD80214.1| type IV pilus assembly protein PilC [Synechococcus elongatus PCC
6301]
Length = 410
Score = 44.0 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 12/138 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L V++G+ I +AL + E ++ L + + ++ N + F
Sbjct: 70 MALFSRQLSSLVDAGVPIVRALGLLTE--QTRNPKLRKTLKQINIDVQEGLNLSDSMRKF 127
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
A+IQ+ G + D L L + + K+A +T PM
Sbjct: 128 PK-----VFDGLYVAMIQAGETGGVLDDVLNRLSKLLEDMSRLRNQMKSA-----MTYPM 177
Query: 303 IIFFLPVLILVIIGPAIL 320
+F +L+ + + I+
Sbjct: 178 AVFVTAILVFLGMTIFII 195
>gi|21221973|ref|NP_627752.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|4539572|emb|CAB38491.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 267
Score = 44.0 bits (102), Expect = 0.033, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ + + AE+ A+ + + L +++ G + L
Sbjct: 152 GPVGDALGRGAAEVRLGGEPAGAWRGLA---AVPGAVPLARLLERAEVSGLPAAGPVARL 208
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++ +A +T P+ + FLP I V + P ++
Sbjct: 209 AAQVRADWARTTTVRARRAAVMVTAPVGLCFLPAFIAVGVLPVVI 253
>gi|297159256|gb|ADI08968.1| putative type II secretion system F protein [Streptomyces
bingchenggensis BCW-1]
Length = 303
Score = 44.0 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 6/155 (3%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
V ++ + +R+ A + + + +G +AL
Sbjct: 88 VGASVLPLLAGAAAVPLVGRWRRARQRDRRRDRRAAAVIELCGAVAGELRAGRQPVEAL- 146
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ + E L A F + A + + + G
Sbjct: 147 -----LATPPGHIGERWGLVSAAARFGGDVAEALRRAARSPGAEGLIGVAACWQVAVDEG 201
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ L + + R+ER ++ G + T
Sbjct: 202 AGLAAGLDRVAAALRAERDQRQSLRSRLAGARATA 236
>gi|317122038|ref|YP_004102041.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
12885]
gi|315592018|gb|ADU51314.1| hypothetical protein Tmar_1201 [Thermaerobacter marianensis DSM
12885]
Length = 274
Score = 44.0 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
K + A L ++ +++G + QA A ++ L +A LS
Sbjct: 85 AGKAVDAAAEALESVLVTVIAHLQAGRPLRQAWVEAAREVVA--PVLEPAKAEFVAGLSA 142
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A +Y RT++ +R R G ++ R +RL A+ A
Sbjct: 143 GLSLDEALGQWYERTRLRALRRCQAVAAAHRRTGGDATGPTLAVIHGLREQRLAWADVAA 202
Query: 292 ASLG 295
+
Sbjct: 203 RTAE 206
>gi|283778327|ref|YP_003369082.1| type II secretion system protein [Pirellula staleyi DSM 6068]
gi|283436780|gb|ADB15222.1| type II secretion system protein [Pirellula staleyi DSM 6068]
Length = 474
Score = 44.0 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 8/148 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L I ++G+ I ++LR + ++ + L ++ E+ A
Sbjct: 73 SKQLSLFTKQLSILQDAGLPILRSLRIL--ELQSKPGALKNALMDVGDEIESGSTLSEAM 130
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+I++ G ++ LR L ++ + K A + P +
Sbjct: 131 AKSPK-----VFSRLYINMIKAGEAGGALEVILRRLSEFLERSESLKRKVKGAMIYPVVV 185
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
V + I L V I++ I P + D
Sbjct: 186 VLVAISIL-VFIMLKIVPVFKKMFDEFG 212
>gi|157376160|ref|YP_001474760.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
gi|157318534|gb|ABV37632.1| type II secretion system protein [Shewanella sediminis HAW-EB3]
Length = 403
Score = 44.0 bits (102), Expect = 0.035, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 9/136 (6%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + ++SG+ ID+AL +A G L++ + ++ + A
Sbjct: 74 LSLLLQSGVKIDKALSVLARTKSGT--ALADLLQKLSNDVRKGQSLSEAMAKHPK----- 126
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
N L+ ++ + L + + E + K +V +++ V
Sbjct: 127 VFDNLYINLVTIGESSGNLVEVFAGLAQDL--KYRKELKSKITQAIVYPSVILLVCICSV 184
Query: 310 LILVIIGPAILSIIDT 325
L + L+++
Sbjct: 185 LFIFNFVVPKLTVMFA 200
>gi|322371246|ref|ZP_08045798.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
gi|320549236|gb|EFW90898.1| type II secretion system protein [Haladaptatus paucihalophilus
DX253]
Length = 640
Score = 43.6 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 3/190 (1%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+ L + + +L+ YV F P +S +R + R D +
Sbjct: 370 AAVLAPATVAVGGLLWYLEYTPVNTVLLSYVAFALPVGVVSVRRSRRDDAKDREIKDFVH 429
Query: 189 LLLICVESGISIDQALRRVAE--DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ V G A+ RVA D+G +++ + R+ A F
Sbjct: 430 AVSSHVSLGRPFSTAVERVARDVDLGALQPNVNDLAFSSNLTSREGDLRRDALSRFVEDV 489
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + G L E + ++ L + V +
Sbjct: 490 GTPLADQTIGLVTGTLDVGGDTETVFDTLQVEIGRLYHQKKSLRSNML-VYVVVGWMTAL 548
Query: 307 LPVLILVIIG 316
L V I+V +
Sbjct: 549 LVVGIMVAVN 558
>gi|298528955|ref|ZP_07016358.1| Type II secretion system F domain protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510391|gb|EFI34294.1| Type II secretion system F domain protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 401
Score = 43.6 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 50/136 (36%), Gaps = 7/136 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
R + +G+ I QAL+ + + ++ L ++ ++ + +
Sbjct: 61 SRDMVVFSRQFATLINAGVPILQALQVMCD--QTENKILRRKLYEVKNDIEGGSSLYDSL 118
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ D + ++ + G + L L ++A K+A + P +
Sbjct: 119 KK-----HPDVFDDLYTNMVDAGEAGGVLDLVLDRLARYIEKAARLKARVKSALIYPGVI 173
Query: 300 VPMIIFFLPVLILVII 315
+ + + + ++++ +I
Sbjct: 174 ITVAVAVIAIILIFVI 189
>gi|237733725|ref|ZP_04564206.1| type II secretion system protein [Mollicutes bacterium D7]
gi|229383323|gb|EEO33414.1| type II secretion system protein [Coprobacillus sp. D7]
Length = 397
Score = 43.6 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 63/167 (37%), Gaps = 12/167 (7%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+ I+ K + + + + SG+ + + + +A + L
Sbjct: 37 MYLISHKDITKEETKNYKMKLKELANFCREIGTMMNSGLPLIRTVSILAS--REDNKKLK 94
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+L A + + +++S ++ D++ VL ++
Sbjct: 95 AIYNDIYVKLQQGQTLSDALKEQGKAFP-----DILIQMVRSGEASGNMQDTMMVLNNQF 149
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ ++ + K+A +T P+I+ + +++L+I+ A+L +M
Sbjct: 150 TNDNKIKNKVKSA-----MTYPVILGIVTIVVLLIVYTAVLPSFFSM 191
>gi|257793129|ref|YP_003186527.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479821|gb|ACV60138.1| hypothetical protein Aaci_3142 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 287
Score = 43.6 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 73/225 (32%), Gaps = 14/225 (6%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
SR TR+ + +L ++ E +L G+ + L +
Sbjct: 23 SRWETREKRKPFLTEGRLPVQTPSYVERFQAELERWGWSVSKRVITLAWT------GLAL 76
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G + + + F L L V + ++ + + + A P L +
Sbjct: 77 VGALLPQVFGDPIWMSFGLAALCACLPFPVFRVLKTRYVWRVEK---GLRETALPLGLSV 133
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + G++I+ LR + + E + + + A ++ +
Sbjct: 134 LEATEDVGLAIEDILRHGKDPVIQ-----REFEAIRARVQALGLPPEDALVEHAMQSGVP 188
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ Q RYG + R ++++ + + + +A +
Sbjct: 189 AFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTA 233
>gi|284028545|ref|YP_003378476.1| type II secretion system protein [Kribbella flavida DSM 17836]
gi|283807838|gb|ADB29677.1| type II secretion system protein [Kribbella flavida DSM 17836]
Length = 272
Score = 43.6 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 12/222 (5%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L + +++L +A L + ++ L L I G L
Sbjct: 16 LTVLPRRSRALHRLTSARSDRRSDGAAGLARSVRRRLVPLALSAIVALGIGLSLGAA--- 72
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ + + +G V + + +A D L + +G AL A
Sbjct: 73 ALVSTLAVGVVLAVITTQRARARRLHLADQKRAQVIEACDTLAAELAAGRPPHDALEGAA 132
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
E + E+ A + + + + ++ A +DR G ++
Sbjct: 133 E--------VCAELRPAAAAARLGGDVPAVLQLAADTPGAESLKALAAAWQVADRSGAAV 184
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L + R+E + + G + T + + LP+
Sbjct: 185 AAIVDRLAASLRAEESLRRQIATNLAGARTTARL-LAILPLF 225
>gi|146351305|ref|YP_001210532.1| putative typeII /IV secretion system integral membrane protein,
TadB related [Arthrobacter nitroguajacolicus]
gi|146218869|emb|CAL09940.1| putative typeII /IV secretion system integral membrane protein,
TadB related [Arthrobacter nitroguajacolicus]
Length = 290
Score = 43.6 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 20/183 (10%), Positives = 58/183 (31%), Gaps = 5/183 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
++ + + +I + F P++ + ++ L
Sbjct: 58 FAASVVGGIVAWYATGWIVCLIAVPLAAFGLPALVGKSGATADIKKLEA-LATWTHSLSG 116
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G ++ L+ + + ++ ++ L++ + A + F +
Sbjct: 117 LITTGAILEHVLQVS---LRNAPEEIKPQVSNLVSRLNYRWSPPAALKAFADELNDATAD 173
Query: 253 NATQALIQSDR-YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L+ + + G + D+L L S E E + P+ T ++ V +
Sbjct: 174 IVVAHLLLAYKIRGGGLADALDDLASIINDEVRHRREIETDREKPRTTAKLVTLITAVSL 233
Query: 312 LVI 314
+
Sbjct: 234 TFM 236
>gi|148269965|ref|YP_001244425.1| type II secretion system protein [Thermotoga petrophila RKU-1]
gi|170288650|ref|YP_001738888.1| type II secretion system protein [Thermotoga sp. RQ2]
gi|147735509|gb|ABQ46849.1| type II secretion system protein [Thermotoga petrophila RKU-1]
gi|170176153|gb|ACB09205.1| type II secretion system protein [Thermotoga sp. RQ2]
Length = 399
Score = 43.6 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 12/131 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L I + +GI I +AL +A S+ I E++ + + +
Sbjct: 65 FCRQLSIMISAGIRIKEALNILARQT-----VFSKRFRKVILEIALSVETGDSLAEAFRK 119
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + + +++++ G + +L+ S + ++ E K+A + P+ +
Sbjct: 120 TGV--FDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSA-----MAYPLFVL 172
Query: 306 FLPVLILVIIG 316
F V+I+++I
Sbjct: 173 FFAVVIVLVIS 183
>gi|315230974|ref|YP_004071410.1| flagella protein FlaJ-like protein [Thermococcus barophilus MP]
gi|315184002|gb|ADT84187.1| flagella protein FlaJ-like protein [Thermococcus barophilus MP]
Length = 569
Score = 43.6 bits (101), Expect = 0.043, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 65/222 (29%), Gaps = 8/222 (3%)
Query: 103 RAAGF--RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+ AG +S+ ++ L L I ++ I I + + P + + I +
Sbjct: 4 KKAGIFTQSDLTIRSYLKAVLGPSIAISVVLFIIISIAPRFVGIPHMVSIALY-AIPLLP 62
Query: 161 FCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
+ ++ I P + S +S + ++ P++
Sbjct: 63 LIYAVSYPYAKASSKKVKINSKIPYFATYFAVLSTSDVSRSDLIWNLST--EQILEPIAT 120
Query: 221 EMLLTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+M + A RT + + L S G + D L
Sbjct: 121 DMKKVYYLIAKLHRGMPEALRFLAKRTPSKVFSDFLERLAYSLDSGVELKDYLLQEQKTV 180
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAI 319
+ E L + + V ++ VIIGP I
Sbjct: 181 MDDYETFYENALYDLDVFKEIYSSLIISVVFMVTFVIIGPII 222
>gi|227505649|ref|ZP_03935698.1| type II secretion system protein F [Corynebacterium striatum ATCC
6940]
gi|227197802|gb|EEI77850.1| type II secretion system protein F [Corynebacterium striatum ATCC
6940]
Length = 176
Score = 43.6 bits (101), Expect = 0.043, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L+L +CVE+G+S+ AL VA A L A +
Sbjct: 45 LELFAVCVEAGLSVRDALAGVASTSA------CPAWQEAAALLGVGAPMSSAIAVLREQ- 97
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + L S G +I LV R+E A +A G + VP+ + F
Sbjct: 98 --PQLADLAGLLELSGESGAAIAAGCHRLVETLRAEAAANAVARAERAGVFIAVPLAVCF 155
Query: 307 LPVLILVIIGPAILSI 322
LP I++ + P I+S+
Sbjct: 156 LPAFIVLGLVPVIISL 171
>gi|297529209|ref|YP_003670484.1| type II secretion system F domain protein [Geobacillus sp. C56-T3]
gi|297252461|gb|ADI25907.1| Type II secretion system F domain protein [Geobacillus sp. C56-T3]
Length = 403
Score = 43.6 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 8/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + + ++ + + L V +G++I ++R +AE +S PL++ +
Sbjct: 45 VPPSIWNKEISFGRAVKLQHFVIFLRQFATLVRAGVTIVDSIRILAE--QTESKPLAKTL 102
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L L A N ++++ ++ ++L L
Sbjct: 103 LDIEQSLRSGNPLSAAAANHPRIFPP-----LFVNMVRAGEASGTLDETLDRLADHFEKM 157
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ A++L + V +I + + +LV + P + +
Sbjct: 158 HRTRQKI-ASALAYPIAVAIIATAVVIFLLVAVVPTFVEMFAEF 200
>gi|83589193|ref|YP_429202.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
gi|83572107|gb|ABC18659.1| hypothetical protein Moth_0325 [Moorella thermoacetica ATCC 39073]
Length = 261
Score = 43.6 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 64/216 (29%), Gaps = 7/216 (3%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF 161
L A ++ V + + ++ G+
Sbjct: 8 LSLAVLFYGLTVGEFPEVDRTKDFFKVYGSAAVGAAVMFMAGSILCGTPLGGVVWAVPGW 67
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
P + +R+ +++ D + + + + ++ +AE I PL E
Sbjct: 68 FIPGWLMKMRENRRKERLRQVAKDIIVAAGGMFSANLMTGEVIKTLAERI---PAPLGRE 124
Query: 222 ML--LTIAELSFLPNRQVAFENFYNRTQMDCVR--NATQALIQSDRYGTSIGDSLRVLVS 277
+ EL+ + + ++ A A + + L+ L +
Sbjct: 125 LADIKARRELNSYNTYPQLLNGLAEKYDLMEIKAMAAVLAAAERAGGPAAAAKGLKRLGA 184
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
R + E+K A+ +L ++I L +L
Sbjct: 185 ALRLRDRLIQERKVATYESRLAAVVVIMILAAGLLF 220
>gi|167755497|ref|ZP_02427624.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402]
gi|167704436|gb|EDS19015.1| hypothetical protein CLORAM_01011 [Clostridium ramosum DSM 1402]
Length = 397
Score = 43.3 bits (100), Expect = 0.046, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 63/167 (37%), Gaps = 12/167 (7%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+ I+ K + + + + SG+ + + + +A + L
Sbjct: 37 MYLISHKDITKEETKNYKMKLKELANFCREIGTMMNSGLPLIRTVSILAS--REDNKKLK 94
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+L A + + +++S ++ D++ VL ++
Sbjct: 95 AIYNDIYVKLQQGQTLSDALKEQGKAFP-----DILIQMVRSGEASGNMQDTMMVLNNQF 149
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++ ++ + K+A +T P+I+ + +++L+I+ A+L +M
Sbjct: 150 TNDNKIKNKVKSA-----MTYPVILGIVTIVVLLIVYTAVLPSFFSM 191
>gi|159041008|ref|YP_001540260.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
gi|157919843|gb|ABW01270.1| type II secretion system protein [Caldivirga maquilingensis IC-167]
Length = 271
Score = 43.3 bits (100), Expect = 0.046, Method: Composition-based stats.
Identities = 25/190 (13%), Positives = 63/190 (33%), Gaps = 3/190 (1%)
Query: 114 NILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ L+ V ++ + + KL L + L + +I +++
Sbjct: 31 SELIKVSMLYLFTQAVASLALAIILVKLGPRISLLFILISALSLTAIGMI-NAYIVIMLR 89
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
R +++ L ++ + SG + +A + ++EE ++E
Sbjct: 90 SRARKFEKSMTTILLTMIPLMASGEPLVNVFNYLA--LIKIEPEVNEEFRRLVSEAYSGF 147
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A + R + L++S SI D L + + + + +
Sbjct: 148 DIVSAIKRSIERVPSRVYNDVMSILVESYGVSGSIADVLALKLDSIIRREQSTFKSRTQA 207
Query: 294 LGPKLTVPMI 303
L + V ++
Sbjct: 208 LSLMMEVYVV 217
>gi|325262322|ref|ZP_08129059.1| putative general secretion pathway protein F [Clostridium sp. D5]
gi|324032154|gb|EGB93432.1| putative general secretion pathway protein F [Clostridium sp. D5]
Length = 399
Score = 43.3 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ R+ + D L V +G+++ +AL +A + + ++
Sbjct: 49 KNRKQFKPKVLADFSRQLSTLVGAGVTLVRALNIIAN-GEAIKPNERQVYEDMVRQIRQG 107
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A E + +S ++ + E + + ++
Sbjct: 108 ISLSEAMEAQNGAFPP-----LMIYMYRSAESSGNLELVSMQMALMFEKEHRLNGKISSS 162
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ PK+ MII + VL ++ P + + DTM
Sbjct: 163 LVYPKILGVMIIGVVMVLTKFVM-PQLQELFDTM 195
>gi|329118206|ref|ZP_08246916.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465627|gb|EGF11902.1| 3-isopropylmalate dehydrogenase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 407
Score = 43.3 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 7/129 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +++ + L +++G+ + QA VA G + +++ ++
Sbjct: 50 PLRITKVKATRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHANPSMTQLLM 107
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+++ + AF L+ + G + + L L +
Sbjct: 108 SVKSDVEQGQSMGSAFAKHPKY-----FDRFYCNLVAAGEAGGVLENLLDKLAVYKEKTQ 162
Query: 284 LMEAEKKAA 292
++ + K+A
Sbjct: 163 SIKKKVKSA 171
>gi|281412154|ref|YP_003346233.1| Type II secretion system F domain protein [Thermotoga naphthophila
RKU-10]
gi|281373257|gb|ADA66819.1| Type II secretion system F domain protein [Thermotoga naphthophila
RKU-10]
Length = 399
Score = 43.3 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 12/131 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L I + +GI I +AL +A S+ I E++ + + +
Sbjct: 65 FCRQLSIMISAGIRIKEALNILARQT-----VFSKRFRKVILEIALSVETGDSLAEAFRK 119
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T + + +++++ G + +L+ S + ++ E K+A + P+ +
Sbjct: 120 TGV--FDSVLISMLEAGEEGGVLDRTLKRAADFYESMKRLQDEVKSA-----MAYPLFVL 172
Query: 306 FLPVLILVIIG 316
F V+I+++I
Sbjct: 173 FFAVVIVLVIS 183
>gi|94500431|ref|ZP_01306963.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65]
gi|94427466|gb|EAT12444.1| Type II secretory pathway, component PulF [Oceanobacter sp. RED65]
Length = 405
Score = 43.3 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ SGI I +A+ +AE + L + +LS +
Sbjct: 68 MVIFCRQMHALSRSGIPIMRAVLGLAETTRNTT--LENILRHVGNDLSRGNTLSQSL--- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R ++IQ ++ ++ + LV ER + + KAA P + +
Sbjct: 123 --RAHEHHFTPLFISMIQVGESTGNLDEAFKQLVDHLEMERDTKKKVKAALRYPSMLISA 180
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
I + V+ + +I P+ ++ +
Sbjct: 181 IFIAIIVVNMFVI-PSFANVFNRFG 204
>gi|239929827|ref|ZP_04686780.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 263
Score = 43.3 bits (100), Expect = 0.049, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
P A DLL C+ +G A + V E +GG P+ E + AE+ A++
Sbjct: 120 QLPLAADLLSACIAAGAGPVTAAQAVGEALGG---PVGEALARGAAEVRLGGEPDAAWQR 176
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + L ++D G + + L +E R+E A +A ++ P
Sbjct: 177 LA---SVPGAAALARLLERADVSGLPLSTPVARLAAEARAEWARAATARARRAAVMVSAP 233
Query: 302 MIIFFLPVLILVIIGPAIL 320
+ + FLP + V + P ++
Sbjct: 234 VGLCFLPAFVAVGVLPVVI 252
>gi|302392522|ref|YP_003828342.1| type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
gi|302204599|gb|ADL13277.1| Type II secretion system F domain protein [Acetohalobium arabaticum
DSM 5501]
Length = 403
Score = 43.3 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 44/127 (34%), Gaps = 7/127 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + +++ + + +++G+S+ +AL + + + L E +
Sbjct: 52 LGDKLKQFKKVKLKDLALFCRQFATMIDAGVSLVRALDILGD--QTGNPKLREAIRSVQE 109
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A E + +++++ G + + L + E M+
Sbjct: 110 HVEGGVSLSNALEE-----EDHVFPRLFISMVEAGETGGILDEVLLEMADHFEKENEMKQ 164
Query: 288 EKKAASL 294
+ +A
Sbjct: 165 QITSALA 171
>gi|291452930|ref|ZP_06592320.1| predicted protein [Streptomyces albus J1074]
gi|291355879|gb|EFE82781.1| predicted protein [Streptomyces albus J1074]
Length = 248
Score = 43.3 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 73/219 (33%), Gaps = 29/219 (13%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI----------- 179
+ + V V+ G G+ A + S+
Sbjct: 31 AAFACMFTGVAVGWLVGGGVLEVLAGGAAGWWAHRWMARREAGRGTRSVPGPGRRSSPGR 90
Query: 180 ------------KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
P A DL+ CV +G +A R V +GG + + + A
Sbjct: 91 PAWARGAARPAVDARLPLAADLVAACVAAGAGPVEAARAVGASVGGA---VGQGLARAAA 147
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ + + A+ + + + L ++ G + L + +E R++ A
Sbjct: 148 DVRLGGDPEAAWRHVAE---VPGASALARCLQRAAASGAPAAEPLARIAAEARADGNRAA 204
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
++A +T P+ + FLP + + + P ++ + +
Sbjct: 205 TERARRAAVAVTAPVGLCFLPAFLTLGVAPVVIGLASGL 243
>gi|15642869|ref|NP_227910.1| general secretion pathway protein F, putative [Thermotoga maritima
MSB8]
gi|4980584|gb|AAD35188.1|AE001696_2 general secretion pathway protein F, putative [Thermotoga maritima
MSB8]
Length = 399
Score = 43.3 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 15/160 (9%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPD---ALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G V Q+ + + + + L I + +GI I +AL +A
Sbjct: 36 GLMVVRVEERKKAQRSSTFFQISISEIATFCRQLSIMISAGIRIKEALNILARQT----- 90
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
S I E++ + + +T + N +++++ G + +L+
Sbjct: 91 VFSRRFRKVILEIALNVETGDSLAEAFRKTGV--FDNVLISMLEAGEEGGVLDRTLKRAA 148
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
S + ++ E K+A + P+ + F V+I+++I
Sbjct: 149 DFYESIKRLQDEVKSA-----MAYPLFVLFFAVVIVLVIS 183
>gi|15895250|ref|NP_348599.1| hypothetical protein CA_C1979 [Clostridium acetobutylicum ATCC 824]
gi|15024960|gb|AAK79939.1|AE007702_6 Predicted membrane protein [Clostridium acetobutylicum ATCC 824]
gi|325509396|gb|ADZ21032.1| membrane protein [Clostridium acetobutylicum EA 2018]
Length = 317
Score = 43.3 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 3/184 (1%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
ILG+I + + + V ++ + +VQ I + +
Sbjct: 91 FILGVIIMSFLFSVAVFKIYESVIFSVVAFAALPIILYGVLKEMVQVNFDRIDNSIMFLI 150
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQ 247
L +I + E + PL + ++ + AFEN+ N+ +
Sbjct: 151 SSLKSNAAVKNNIVFMMEETTEKLKE---PLRTYNNDFVRDIRVGMPMKKAFENYINKVE 207
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+RN + L L R+ + ++K+ ++++ I F
Sbjct: 208 NIRLRNILKNLYICSLNNADYCKLLDKTRVVIRNYYEEKEKRKSKVKSAQISITAIAFAT 267
Query: 308 PVLI 311
+++
Sbjct: 268 LIIL 271
>gi|225076115|ref|ZP_03719314.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens
NRL30031/H210]
gi|224952559|gb|EEG33768.1| hypothetical protein NEIFLAOT_01147 [Neisseria flavescens
NRL30031/H210]
Length = 177
Score = 43.3 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P +++ + L +++G+ + QA VA G + ++E +
Sbjct: 56 PLRISKVKTARKRRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHSNPSMTEMLT 113
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+++ +F + L+ + G + L L +
Sbjct: 114 QIRSDVEQGSALGKSFSKYPKY-----FDRFYCNLVSAGESGGVLESLLDKLAVYKEKTQ 168
Query: 284 LMEAEKK 290
++ + K
Sbjct: 169 AIKKKLK 175
>gi|83590395|ref|YP_430404.1| type II secretion system protein [Moorella thermoacetica ATCC
39073]
gi|83573309|gb|ABC19861.1| type II secretion system protein [Moorella thermoacetica ATCC
39073]
Length = 402
Score = 43.3 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 10/161 (6%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ R+ +R L + +G+ I ALR + + + L E + + +
Sbjct: 50 LDWRGLFRRPVSRRDLALFCRQLATMLGAGLPIMSALRVLQRQVE--NPSLRESIGVLLQ 107
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+L A +++ G ++ ++L L ER E
Sbjct: 108 DLESGEAFYRALGRQPRVYPP-----IVIHTVEAGELGGALDETLERLAGHL--EREHEV 160
Query: 288 EKKAASLGPK-LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
E+K S V ++ + +L + P+ ++++++
Sbjct: 161 EEKVKSALTYPAVVSLVAVGAVIFLLTYVLPSFQVMLNSLQ 201
>gi|86609588|ref|YP_478350.1| type IV pilus assembly protein PilC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558130|gb|ABD03087.1| type IV pilus assembly protein PilC [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 408
Score = 43.3 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ +G+S+ ++L + E + L + + AE+ N + R
Sbjct: 72 FSRQFAALINAGVSMVRSLTIMEE--QTGNPKLKKYLRAIRAEVEAGKNLSDSI-----R 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D +++Q+ G + + L L ++ + K+A +T P+++
Sbjct: 125 PYPDAFDGLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSA-----MTYPVVVT 179
Query: 306 FLPVLILVIIGPAIL 320
L VLI + + IL
Sbjct: 180 ILAVLIFLGMVLFIL 194
>gi|261338432|ref|ZP_05966316.1| putative integral membrane protein [Bifidobacterium gallicum DSM
20093]
gi|270276410|gb|EFA22264.1| putative integral membrane protein [Bifidobacterium gallicum DSM
20093]
Length = 193
Score = 43.3 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 72/194 (37%), Gaps = 15/194 (7%)
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQK----------RQSSIKRAWPDALDLLLI 192
V A +L + + + ++K +++S+ L+LL
Sbjct: 3 AISGLQPVLAALLAAGIVWVGCGRGVVGRLRKFALSSANNQRQRASVTLPATLTLELLAA 62
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF--ENFYNRTQMDC 250
+ G S+ +AL V + + G + + + L A+ + +
Sbjct: 63 ALGDGASVPRALIAVGDVVSGATGD---GLRVAGQRLLNGSLWTDAWVMDGSLAAGERRT 119
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ L GT +R ++ + + + E++A+ L L VP + FLP
Sbjct: 120 LQAVRDCLRAPWERGTQAVPQIRAMIEQLDTAERADLEQRASRLSVNLLVPTALCFLPAF 179
Query: 311 ILVIIGPAILSIID 324
I + + P I ++I+
Sbjct: 180 ICIAVIPTIAAMIN 193
>gi|284045233|ref|YP_003395573.1| type II secretion system F domain protein [Conexibacter woesei DSM
14684]
gi|283949454|gb|ADB52198.1| Type II secretion system F domain protein [Conexibacter woesei DSM
14684]
Length = 281
Score = 43.3 bits (100), Expect = 0.053, Method: Composition-based stats.
Identities = 23/197 (11%), Positives = 57/197 (28%), Gaps = 4/197 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + L + G G A + ++ + ++RA P +
Sbjct: 59 LVLVGAVALLAAGWLLAGPLVGLACGAGGPWAVRALLHQRRRRYRVELERAAPAVARAIA 118
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ +G ++ AL A G + + E R
Sbjct: 119 DALGAGHAVPGALVEAARGAEGAAAAELGAAAAALR---MGQPTAAVLERLRARADSRPY 175
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
A++ G + LR L + + + +A + + T +++ +P+
Sbjct: 176 DTLVAAILLQREAGGDLATLLRELAAAQEESMRLLDDARATTAQARFTG-LVVGVMPIGA 234
Query: 312 LVIIGPAILSIIDTMKD 328
+ A + +
Sbjct: 235 AALAELARPGALAMVAQ 251
>gi|294499495|ref|YP_003563195.1| hypothetical protein BMQ_2739 [Bacillus megaterium QM B1551]
gi|294349432|gb|ADE69761.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 392
Score = 43.3 bits (100), Expect = 0.053, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
G+RS+ S + + + I+ IL + + L + I+ +G P
Sbjct: 84 GYRSQTSWKMFMASTIYTLILLFILHALLPAATHNFIMELASLVLFLSIIGLLIGLIKPK 143
Query: 166 VWI-SNLVQKRQSSIKRAWPDALDLLLICV 194
+ V+ R+ + I V
Sbjct: 144 WVLPKFKVKTRKRVLFSYLYLIFSCFFIAV 173
>gi|57233905|ref|YP_182063.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes
195]
gi|57224353|gb|AAW39410.1| pilin biogenesis protein, putative [Dehalococcoides ethenogenes
195]
Length = 401
Score = 43.3 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +ESG I +L + E + E + + ++ + +A
Sbjct: 67 FSRQLALLLESGTDIVTSLELLQE--QTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKA 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+I + G S+ LR L + +R +E EKK S +V ++
Sbjct: 125 FPP-----LYHRVIAAGEQGGSLEVVLRNLANFV--QRNVETEKKIKSALTYPSVVAVVG 177
Query: 306 FLPVLILV-IIGPAILSIIDTMK 327
L +L++V + PA S+ M
Sbjct: 178 ILVLLLMVTFVLPAFTSLYSQMG 200
>gi|53804536|ref|YP_113585.1| general secretion pathway protein F [Methylococcus capsulatus str.
Bath]
gi|53758297|gb|AAU92588.1| general secretion pathway protein F [Methylococcus capsulatus str.
Bath]
Length = 364
Score = 43.3 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 8/162 (4%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P W+S L ++R ++ LL +++G+ +D+AL + ED+ + V L+ +
Sbjct: 8 PFAWLS-LSRRRNRISQKQIGIFTRELLTLLQAGLPLDRALFVL-EDLTREDVALNGMIG 65
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
I + A E Q LI++ G ++ D L L +
Sbjct: 66 RVIELVKGGSQLSAALER-----QEGVFSRFYLNLIRAGEAGGALEDVLERLSDYLERSK 120
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ A + P + + M + L +L+L + P + +T
Sbjct: 121 ELRDTVSTAMIYPAILLTMSVGSL-LLLLTFVVPQFEEMFET 161
>gi|289663712|ref|ZP_06485293.1| general secretion pathway protein F [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668614|ref|ZP_06489689.1| general secretion pathway protein F [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 405
Score = 43.3 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|154499691|ref|ZP_02037729.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC
29799]
gi|150271289|gb|EDM98546.1| hypothetical protein BACCAP_03348 [Bacteroides capillosus ATCC
29799]
Length = 310
Score = 43.3 bits (100), Expect = 0.057, Method: Composition-based stats.
Identities = 26/204 (12%), Positives = 72/204 (35%), Gaps = 15/204 (7%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + V+ + I+F + ++ + + V V ++G AP
Sbjct: 67 LKGTGRADRYEAVKRLSLILFAVGAVLALLINN----------VYMVPILGIGFSLAPIW 116
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ + + + A+ ++ + +A++ E++ + P+ +
Sbjct: 117 YLRSTAASYKKHLNEELETAISIITTSYLRTEDLIRAVK---ENLPYINEPVKANFEAFV 173
Query: 227 AELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E N A + + LIQ + S+ ++L + + R++
Sbjct: 174 YEAELINANLTSAINSLKMKVPNRVFHEWCNILIQC-QSDRSMKNTLPTIAQKFSDVRVV 232
Query: 286 EAEKKAASLGPKLTVPMIIFFLPV 309
++E +A GP+ ++F +
Sbjct: 233 QSELEAMMQGPRREAITMMFLVIA 256
>gi|261418357|ref|YP_003252039.1| type II secretion system protein F [Geobacillus sp. Y412MC61]
gi|319767684|ref|YP_004133185.1| type II secretion system F domain protein [Geobacillus sp.
Y412MC52]
gi|261374814|gb|ACX77557.1| Type II secretion system F domain protein [Geobacillus sp.
Y412MC61]
gi|317112550|gb|ADU95042.1| Type II secretion system F domain protein [Geobacillus sp.
Y412MC52]
Length = 403
Score = 43.3 bits (100), Expect = 0.058, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 8/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + + ++ + + L V +G++I ++R +AE +S PL++ +
Sbjct: 45 VPPSIWNKEISFGRAVKLQHFVIFLRQFATLVRAGVTIVDSIRILAE--QTESKPLAKTL 102
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L L A N ++++ ++ ++L L
Sbjct: 103 LDIEQSLRSGNPLSAAAANHPRIFPP-----LFVNMVRAGEASGTLDETLDRLADHFEKM 157
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ A++L + V +I + + +LV + P + +
Sbjct: 158 HRTRQKI-ASALAYPIAVAIIATAVVIFLLVAVVPTFVEMFAEF 200
>gi|224823845|ref|ZP_03696954.1| type II secretion system protein [Lutiella nitroferrum 2002]
gi|224604300|gb|EEG10474.1| type II secretion system protein [Lutiella nitroferrum 2002]
Length = 408
Score = 43.3 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 13/163 (7%)
Query: 170 NLVQKRQSSIKRAWPD-----ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++KR++ + D L +++G+ + Q+ A+ G + +++ +L
Sbjct: 52 QKLKKRKAGFGKRITDRDITLFTRQLATMMKAGVPLLQSFDISAK--GHSNPAVTKMLLE 109
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
A++ + AF R + LI + G + L L +
Sbjct: 110 VRADVETGMSLAEAF-----RKRPLYFDKLFCNLIAAGETGGVLDSLLDKLATYREKIMA 164
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
++ + K+A + P + F + +I++ + PA + +
Sbjct: 165 IKGKIKSAMIYPSAIIAT-AFIITTIIMLYVIPAFKDLFSSFG 206
>gi|120406353|ref|YP_956182.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
gi|119959171|gb|ABM16176.1| type II secretion system protein [Mycobacterium vanbaalenii PYR-1]
Length = 191
Score = 43.3 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
LD+L C+ SG+ + A VAE L + ++ + A+ N +
Sbjct: 50 LDVLAACLRSGMPVASAAAAVAESAPAGLAML---LRRAADLVALGADPNRAWAN-PDGV 105
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V + +S GT++ + L + R E + A +A + P+ + +
Sbjct: 106 ADRYVDAFLRMARRSASSGTALAQGVEDLAVQLRGEAVDAASARAERASVLMAAPLGVCY 165
Query: 307 LPVLILVIIGPAILSI 322
LP + V I P + +
Sbjct: 166 LPAFLCVGIVPVVAGL 181
>gi|268608767|ref|ZP_06142494.1| type II secretion system protein [Ruminococcus flavefaciens FD-1]
Length = 399
Score = 42.9 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 10/143 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + SG+++ +A+ + ++ + + + E
Sbjct: 61 LAFCCRQLSAMLTSGLTLVKAIDILTKEQENEKA--RAIWQDVYENVQKGESFSSTLE-- 116
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +++ + S+ ++ + E ++ K + +
Sbjct: 117 ---MHSGSFPDFLISMVGAGETSGSLDIIMQRMSDHYAKENKLKNTIKG--AMVYPIILL 171
Query: 303 IIFFLPVLILVI-IGPAILSIID 324
+ + VL L I I P L + D
Sbjct: 172 GLCIVIVLFLFIKIMPTFLGMYD 194
>gi|256397304|ref|YP_003118868.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256363530|gb|ACU77027.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 303
Score = 42.9 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 4/152 (2%)
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
A I G + F ++ ++ + A + L + + ++QA+ A
Sbjct: 76 AAIAAGVLVFFWNQLFGGLAAERAALARVEALAGWTESLRDTIAGAVGLEQAIPATAR-- 133
Query: 212 GGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGD 270
S + E + + L A E F + ALI + R G + +
Sbjct: 134 -AASPAIRENLHTLVDRLRARMPLPQALEYFADDMDDASADLVIAALILNARLRGPGLRE 192
Query: 271 SLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
L L +R E M A + +V +
Sbjct: 193 VLGALAQSSREEVDMRQRVMAQRSSTRRSVQI 224
>gi|50954221|ref|YP_061509.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950703|gb|AAT88404.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 256
Score = 42.9 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV 313
+ L +R G + D L + R +E +AA+L +L +P+ + LP +++
Sbjct: 179 LDRVLRIEERAGAPVADLLASASRQERRSARVEGRARAATLAVRLLLPLGVCVLPAFLVL 238
Query: 314 IIGPAILSIIDT 325
+ P IL++I +
Sbjct: 239 GVAPVILAMISS 250
>gi|258510601|ref|YP_003184035.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477327|gb|ACV57646.1| hypothetical protein Aaci_0598 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 288
Score = 42.9 bits (99), Expect = 0.062, Method: Composition-based stats.
Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 16/226 (7%)
Query: 70 SRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLI 129
SR TR+ + +L ++ E +L G+ L +
Sbjct: 23 SRWETREKRKPFLTEGRLPVQTPSYVERFQAELERWGWSVSKRAIALTWT------GLAL 76
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
+G + + + F L L V + ++ + + + A P L +
Sbjct: 77 VGALLPQVFGDPIWMSFGLAALCACLPFPVVRVLKTRYVWRVEK---GLRETALPLGLSV 133
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQM 248
L + G++++ LR + + E A ++ + A ++ +
Sbjct: 134 LEATEDVGLAVEDILRH------SKDPVIRREFETIRARIAALGVPPEDALVEHAMQSGV 187
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ Q RYG + R ++++ + + + +A +
Sbjct: 188 PAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTA 233
>gi|291438159|ref|ZP_06577549.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
gi|291341054|gb|EFE68010.1| predicted protein [Streptomyces ghanaensis ATCC 14672]
Length = 324
Score = 42.9 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 5/173 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W ++ V V+ V ++ ++ + S + A L
Sbjct: 102 WWSPAAGMVLAVLGASVLPVVAGAAGVPLLRRVRLAARERRVRESREDAVIALCGALAGE 161
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G AL D GG L + +A F + A + +R
Sbjct: 162 VRAGRQPGAALLTAVRDSGG----LGDAQAAVLAAARFGGDVPEALAAAAQP-GAEGLRG 216
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ G + D L L + R+ER A+ +A G + T M+
Sbjct: 217 LAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGL 269
>gi|118619399|ref|YP_907731.1| hypothetical protein MUL_4231 [Mycobacterium ulcerans Agy99]
gi|118571509|gb|ABL06260.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length = 264
Score = 42.9 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 5/184 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ L + + V+ + V A LV+ R A AL++L+
Sbjct: 43 WLGCLLACALAGAVLVMPLTTVLAVAVVAGTASRRRRRRLVRARGVREGWALEAALEILV 102
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD-C 250
+ G +A A P++ M A + R+ +
Sbjct: 103 GELRVGAHPVRAFGVAA---DETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSALPAH 159
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ +G +I +R + + A+ A G + + I+ LPVL
Sbjct: 160 WERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAG-ILAGLPVL 218
Query: 311 ILVI 314
+V+
Sbjct: 219 GVVL 222
>gi|86606612|ref|YP_475375.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
gi|86555154|gb|ABD00112.1| type IV pilus assembly protein PilC [Synechococcus sp. JA-3-3Ab]
Length = 408
Score = 42.9 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ +G+S+ ++L + E + L + + AE+ N + R
Sbjct: 72 FSRQFAALINAGVSMVRSLTIMEE--QTGNPKLKKYLRAIRAEVEAGKNLSDSI-----R 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D +++Q+ G + + L L ++ + K+A +T P+++
Sbjct: 125 PYPDAFDGLYCSMVQAGEVGGVLDEVLNRLAKLLEDMDRLQKQIKSA-----MTYPVVVT 179
Query: 306 FLPVLILVIIGPAIL 320
L VLI + + IL
Sbjct: 180 ILAVLIFLGMVLFIL 194
>gi|150021619|ref|YP_001306973.1| type II secretion system protein [Thermosipho melanesiensis BI429]
gi|149794140|gb|ABR31588.1| type II secretion system protein [Thermosipho melanesiensis BI429]
Length = 397
Score = 42.9 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 64/169 (37%), Gaps = 15/169 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPD---ALDLLLICVESGISIDQALRRVAEDIGGQSV 216
G + + + ++ ++ D L +++G+ + +A+ ++ S
Sbjct: 35 GLSVVDIREAKIRKEFKNIFGIPLKDIVFFTRQLETMIKAGLRLREAIHILSNQ-EIFSK 93
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLV 276
+ +L + EL + AF+ N ++++ G + ++L L
Sbjct: 94 RFRKVLLNVVNELDVGTSLTDAFKKQG------VFDNVFINMLKAGEEGGVLEETLEKLS 147
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + K+A + P+ I V+++++I IL +
Sbjct: 148 NYYENLNRTQQQVKSA-----MVYPIFILSFAVIVVLVISLFILPKLFM 191
>gi|285019423|ref|YP_003377134.1| general secretion pathway protein f [Xanthomonas albilineans GPE
PC73]
gi|283474641|emb|CBA17140.1| probable general secretion pathway protein f [Xanthomonas
albilineans]
Length = 404
Score = 42.9 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + E + + + A E
Sbjct: 67 LVQFTQQLATLLGAGQPLDRALSILLELPEDERS--KRTIGDIRDAVRGGAPLSTALER- 123
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q ++++ G S+ D+L+ L R + A + P + V +
Sbjct: 124 ----QHGLFSRLYINMVRAGEAGGSLHDTLQRLAEYLERSRELRGRVINALIYPAILVSV 179
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L + +L + P + +++
Sbjct: 180 VGCAL-LFLLGYVVPQFAQMYESL 202
>gi|227487255|ref|ZP_03917571.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541578|ref|ZP_03971627.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227092913|gb|EEI28225.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182546|gb|EEI63518.1| type II secretion system protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 185
Score = 42.9 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 9/136 (6%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
++L C+E+G+S QA V G L T + L+ + A+
Sbjct: 54 VELFSACLEAGLSHAQAAHAVGMCGGDS------AWLTTASLLAVGLDPDTAW---APVR 104
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + R G SI + + + EA G + +P+ + F
Sbjct: 105 ALPGCADIASLASAATRTGASIVAGCMRVADKLATRAADEATAATERAGVLIALPLTMCF 164
Query: 307 LPVLILVIIGPAILSI 322
LP L+ + P ++S+
Sbjct: 165 LPAFFLLGLVPVLVSL 180
>gi|224368238|ref|YP_002602401.1| GspF1 [Desulfobacterium autotrophicum HRM2]
gi|223690954|gb|ACN14237.1| GspF1 [Desulfobacterium autotrophicum HRM2]
Length = 411
Score = 42.9 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 8/146 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G + A+ + +S PL + + + + A +
Sbjct: 74 LAMVTRQLATLLSAGFPLISAVSSLVT--QTRSKPLKKVLSKIKGSIEEGKSFAEALAMY 131
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+I++ ++ L L T + + +AA P L +
Sbjct: 132 P-----SLFSAIYINMIRAGESSGTLEIVLERLADITEKREETKKKIQAALAYPVLMAIV 186
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
L L+ I P I++I M
Sbjct: 187 GALVLLFLLA-YIVPGIIAIFSDMNQ 211
>gi|297201342|ref|ZP_06918739.1| predicted protein [Streptomyces sviceus ATCC 29083]
gi|197712795|gb|EDY56829.1| predicted protein [Streptomyces sviceus ATCC 29083]
Length = 321
Score = 42.9 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ E + AE+ A+ + L ++D G + L
Sbjct: 208 GPVGEGLARGAAEVRLGGEPDEAWRRLA---STPGAGALARLLERADVTGLPAAGPVGGL 264
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++ A +A +T P+ + FLP I V + P ++
Sbjct: 265 AADARADWGRAATARARKAAVLVTAPVGLCFLPAFIAVGVLPIVI 309
>gi|78049223|ref|YP_365398.1| type II secretory pathway component [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037653|emb|CAJ25398.1| type II secretory pathway component [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 405
Score = 42.9 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|242398766|ref|YP_002994190.1| Flagella accessory protein [Thermococcus sibiricus MM 739]
gi|242265159|gb|ACS89841.1| Flagella accessory protein [Thermococcus sibiricus MM 739]
Length = 570
Score = 42.9 bits (99), Expect = 0.075, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 66/206 (32%), Gaps = 5/206 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
++++P I + + +F ++ A+ I + + ++ ++
Sbjct: 20 YARKVLLPSIAGSIILFIVFSLVPRFTTISRIIRIALYAIPILPLVYAIMHPYSMASGKK 79
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNR 235
I P + + S + ++ + +A+ P+S +M + F
Sbjct: 80 VKINSKIPYFVTYFAVLSTSEVGRNELIHTLAK--EKVLEPISRDMEKIYHLIAKFNRGM 137
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
AF RT + + L S G + + L + E L
Sbjct: 138 PEAFRFLVKRTPSKVFSDFLERLAYSLDSGVELREYLLQEQKIVMDDYQTFYEGALYDLD 197
Query: 296 PKLTVPMIIFFLPVLIL--VIIGPAI 319
V + V ++ +IIGP I
Sbjct: 198 VFKEVYSSLIISVVFMVTFIIIGPII 223
>gi|318060835|ref|ZP_07979558.1| hypothetical protein SSA3_23033 [Streptomyces sp. SA3_actG]
Length = 274
Score = 42.9 bits (99), Expect = 0.077, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 6/134 (4%)
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
CV +G +A V + G + E + AE+ + A+ F +
Sbjct: 144 CVAAGAGPVEAAEAVGASLDGL---VGERLRHVAAEIRLGGEPERAWALFG---SLPGAG 197
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
L ++ G + L ++ R+ A A G +TVP+ + FLP ++
Sbjct: 198 GLAGLLQRATVSGAPVAAPALALAADCRARWARGATAAARRAGVLVTVPLGLCFLPAFLI 257
Query: 313 VIIGPAILSIIDTM 326
+ + P +L + +
Sbjct: 258 LGVAPVLLGLAGEL 271
>gi|73669465|ref|YP_305480.1| flagellar assembly protein J [Methanosarcina barkeri str. Fusaro]
gi|72396627|gb|AAZ70900.1| flagella related protein FlaJ [Methanosarcina barkeri str. Fusaro]
Length = 517
Score = 42.9 bits (99), Expect = 0.077, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 82/223 (36%), Gaps = 15/223 (6%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
KL RS+ I + R+++P + + + + G +
Sbjct: 208 KAAPAEKKLHTLSRRSKEQEIIRFLSRILLPAGAISVAALILIGTELQYT---------- 257
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV-ESGISIDQALRRVAEDIG 212
L+ F P + + + + + ++P + L +GI+I A+ + ++
Sbjct: 258 -LLAITFFTLPIGFFAMVDDRNINERDSSFPAFVKTLGTLAGTTGITIRSAMEDLDKETI 316
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL 272
G L E+ A LS ++ +E F T + + ++ + G +
Sbjct: 317 GG---LRPEVEELHAWLSLGLKSKLCWEKFIGETGSELINRCSRIFTDAVELGGDPAEIG 373
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ S + + L+ +++ S G + + + L++ II
Sbjct: 374 EIVSSSSLAIVLLRMKRQLVSSGFRGLAITLHAVMIGLLIFII 416
>gi|75906599|ref|YP_320895.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
gi|75700324|gb|ABA20000.1| type II secretion system protein [Anabaena variabilis ATCC 29413]
Length = 407
Score = 42.9 bits (99), Expect = 0.078, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L V +G++I + L + + + L + + ++ N A R
Sbjct: 72 FSRQLATLVNAGVAIVRGLGVLGDQC--TNAKLKQALNDISNDVQSGVNLSDAM-----R 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
DC ++IQ+ G + + L L ++ + K+A P + +
Sbjct: 125 KHPDCFDGLYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQLKSALAYPVVVGILATA 184
Query: 306 FLPVLILVIIGPAILSI 322
V + V + P I
Sbjct: 185 IF-VGMTVFLIPIFAKI 200
>gi|169627576|ref|YP_001701225.1| hypothetical protein MAB_0472 [Mycobacterium abscessus ATCC 19977]
gi|169239543|emb|CAM60571.1| Conserved hypothetical membrane protein [Mycobacterium abscessus]
Length = 194
Score = 42.5 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 5/163 (3%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + +LD+ +C+ SG+ + V L+ +
Sbjct: 27 PHRLPASFERDDIEKGLLGMAFSLDMFGVCLRSGMPVA---TAALVVAAAAPVELARILR 83
Query: 224 LTIAELSFLPNRQVAFENFY--NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
L+ A+ + + + + T+ +S G + D + L + R
Sbjct: 84 RAGEMLALGAPASTAWMDAGSPDDPGYEQRQALTRLARRSADSGVVMADGIASLAVQCRR 143
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ L A A G + P+ + FLP I + I P ++ +
Sbjct: 144 DALDSAVATAERAGVLIGAPLGLCFLPSFICLGIVPVVMGLAR 186
>gi|294625722|ref|ZP_06704342.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666165|ref|ZP_06731421.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325928118|ref|ZP_08189329.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
gi|292599958|gb|EFF44075.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604081|gb|EFF47476.1| general secretion pathway protein F [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325541507|gb|EGD13038.1| Type II secretory pathway, component [Xanthomonas perforans 91-118]
Length = 405
Score = 42.5 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|183602334|ref|ZP_02963701.1| hypothetical protein BIFLAC_00689 [Bifidobacterium animalis subsp.
lactis HN019]
gi|241190268|ref|YP_002967662.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241195674|ref|YP_002969229.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|183218548|gb|EDT89192.1| hypothetical protein BIFLAC_00689 [Bifidobacterium animalis subsp.
lactis HN019]
gi|240248660|gb|ACS45600.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250228|gb|ACS47167.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295793255|gb|ADG32790.1| Flp pilus assembly protein [Bifidobacterium animalis subsp. lactis
V9]
Length = 178
Score = 42.5 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 6/143 (4%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L LL + G++I +AL + GG ++ + A L A+ +
Sbjct: 39 LLQLLEAAIAQGVAIPRALECIGACCGGAC---AQVLGHVSAALLRGVCWDEAWAVLEHD 95
Query: 246 TQMDC---VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ A + L + G S + + + E++A+ L +L +PM
Sbjct: 96 GSSPASSALGLACRTLRAAWEDGVSPLPQIHAAIEQMDGSERARIEQRASRLSVRLLLPM 155
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
+ LP +L+ + P I+S +
Sbjct: 156 GLCLLPAFLLIAVVPTIMSFMRM 178
>gi|167628390|ref|YP_001678889.1| type ii secretion system f domain protein [Heliobacterium
modesticaldum Ice1]
gi|167591130|gb|ABZ82878.1| type ii secretion system f domain protein [Heliobacterium
modesticaldum Ice1]
Length = 408
Score = 42.5 bits (98), Expect = 0.084, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 8/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P + + + R+ R L V++GI + +L VA + L
Sbjct: 51 LPDIRLHGSLPWRRPVDARQLSGFCRQLAALVDAGIPMCTSLSMVARRLR--PPALQRAA 108
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
LS A E + L+++ G + SL L E
Sbjct: 109 QQVALALSQGETLISALEQQRHVFP-----ELFVRLVETGEAGGVLDQSLHRLADHYDKE 163
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + +AA L P L + L +I PA +++ ++
Sbjct: 164 SAITRKIRAALLYPALVLATAGGSTVFFFLYVI-PAYSALLTSLG 207
>gi|58580471|ref|YP_199487.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188578592|ref|YP_001915521.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58425065|gb|AAW74102.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188523044|gb|ACD60989.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 405
Score = 42.5 bits (98), Expect = 0.086, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|147677471|ref|YP_001211686.1| type II secretory pathway, component PulF [Pelotomaculum
thermopropionicum SI]
gi|146273568|dbj|BAF59317.1| type II secretory pathway, component PulF [Pelotomaculum
thermopropionicum SI]
Length = 404
Score = 42.5 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R L +++G+ + QAL + L + + + L A
Sbjct: 68 RNMSILCRQLATMLQAGVPLLQALHILTR--QTGHKGLRDSLSVITRLLEEGRTFSEALR 125
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
F ++ ++ + +L L E + + K+A + P + V
Sbjct: 126 MFPAIYP-----GIMVSMAEAGEVTGRLDYALENLAGHFEREHNISEKIKSAMVYPAVLV 180
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
I + ++ ++++ P+ +++DT+
Sbjct: 181 ATGIAAVSIVFILVV-PSFKAMLDTLG 206
>gi|46198748|ref|YP_004415.1| pili assembly protein pilC [Thermus thermophilus HB27]
gi|17226361|gb|AAL37752.1|AF436068_1 competence protein PilC [Thermus thermophilus HB27]
gi|46196371|gb|AAS80788.1| pili assembly protein pilC [Thermus thermophilus HB27]
Length = 441
Score = 42.5 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+++ QAL + ++ E + ++ A
Sbjct: 102 LAIFSRQLATMLGAGLTLLQALAILER--QTENRKFREILKQVRTDVEGGMAFSEALSK- 158
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
L+++ + L L S E + + ++A +T P+
Sbjct: 159 -----HKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSA-----MTYPV 208
Query: 303 IIFFLPV----LILVIIGPAILSIIDTMK 327
I+F V +L I P I+ +
Sbjct: 209 IVFVFAVGVAYFLLTGIVPQFAQILTDLG 237
>gi|212224327|ref|YP_002307563.1| flagellar assembly protein J [Thermococcus onnurineus NA1]
gi|212009284|gb|ACJ16666.1| archaeal flagella-related membrane protein J [Thermococcus
onnurineus NA1]
Length = 576
Score = 42.5 bits (98), Expect = 0.090, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 5/209 (2%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ ++++P + + I G Y + LI V + + + ++
Sbjct: 19 YLRKVLLPYMAISAAIFLAVGVITTFLYMPTALKVLMFLIPVVLLVYAAAYPYIVADSKR 78
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SFLPNR 235
SI P + + S + + ++ + +++E+ + +
Sbjct: 79 ISINSKMPYFITYFAVLSTSEMGRADLIAVLSH--DPKLGAIADELKKVHTIVNRLHLSM 136
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
AF RT + L S G + D L + E L
Sbjct: 137 PEAFRFLARRTPSTMFADFLDRLAYSLDSGVDLKDYLFQEQQTVMDDYQTFYEGALYDLD 196
Query: 296 PKLTVP--MIIFFLPVLILVIIGPAILSI 322
+ +II + + VIIGP I +
Sbjct: 197 IFKEIYESIIISVVFIASFVIIGPIITGM 225
>gi|310657500|ref|YP_003935221.1| general secretory pathway component, cryptic [Clostridium
sticklandii DSM 519]
gi|308824278|emb|CBH20316.1| general secretory pathway component, cryptic [Clostridium
sticklandii]
Length = 405
Score = 42.5 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 45/135 (33%), Gaps = 12/135 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ + AL + + ++ L + +E+ A +
Sbjct: 71 FCKQLYTMLNAGMPLSNALDVLGD--QTENKVLRRTVKEVYSEVQTGLILSQAMKKHKKV 128
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++++ ++ + L + E + ++ K A + P I+
Sbjct: 129 FPN-----LLITMVEAGEMTGNLDNVLAKMSEHYEKENKINSKIKGA-----MVYPAILS 178
Query: 306 FLPVLILVIIGPAIL 320
V +++ + I+
Sbjct: 179 VAAVGVVIFLLTFIM 193
>gi|311744031|ref|ZP_07717837.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
gi|311313161|gb|EFQ83072.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
Length = 289
Score = 42.5 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 4/209 (1%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
R +++ V P + + + L+ G + F P++
Sbjct: 27 LRPREERSVVGPRSGVQPALRRLGARVPGTAAAVLVTLLLTRWPVLAAAAGALVFFGPAL 86
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ +KR + + L + + ++Q + + ++ ++ +
Sbjct: 87 FGGAAQEKRAIAKLEGLAAWTESLRDTIAGAVGLEQ---AIPATAYAAAPSIAPQLTILA 143
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIGDSLRVLVSETRSERLM 285
L VA + F + AL+ + + G + D L L R E M
Sbjct: 144 DRLRVRTPLPVALQRFADDLDDPSADLIVAALMLNAKLRGPGLRDVLTSLADSAREELEM 203
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVI 314
A + +V +++ + +
Sbjct: 204 RRRVGAGRASTRRSVQIVMAISIAFVFGL 232
>gi|66476351|gb|AAY51449.1| pilin biogenesis protein [Microcystis aeruginosa PCC 7806]
gi|159026048|emb|CAO86289.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 404
Score = 42.5 bits (98), Expect = 0.094, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G+ I + L + + + + + + ++ A
Sbjct: 69 FSRQFSVMINAGVPIMRCLGVLGD--QSSNPKMRKALQAISTDVQQGSPLSQAMAKHTEC 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++I++ G + + L L ++ + K+A +T P+ +
Sbjct: 127 -----FDELYVSMIEAGETGGVLDEVLLRLSKLLEDMARLKNQIKSA-----MTYPVAVG 176
Query: 306 FLPVLILVIIG----PAILSIIDTMK 327
L +++ + P I +K
Sbjct: 177 ILAIIVFFGMTIFLIPVFAKIFTDLK 202
>gi|17229934|ref|NP_486482.1| pilin biogenesis protein [Nostoc sp. PCC 7120]
gi|17131534|dbj|BAB74141.1| pilin biogenesis protein [Nostoc sp. PCC 7120]
Length = 407
Score = 42.5 bits (98), Expect = 0.095, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 8/137 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L V +G++I + L + + + L + + ++ N A R
Sbjct: 72 FSRQLATLVNAGVAIVRGLGVLGDQC--TNAKLKQALNDISNDVQSGVNLSDAM-----R 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
C ++IQ+ G + + L L ++ + K+A P + +
Sbjct: 125 KHPGCFDGLYVSMIQAGEVGGVLDEVLNRLAKLLEDMARLQNQIKSALAYPVVVGILATG 184
Query: 306 FLPVLILVIIGPAILSI 322
V + V + P I
Sbjct: 185 IF-VGMTVFLIPIFAKI 200
>gi|166713412|ref|ZP_02244619.1| general secretion pathway protein F [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 405
Score = 42.5 bits (98), Expect = 0.099, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|21244268|ref|NP_643850.1| general secretion pathway protein F [Xanthomonas axonopodis pv.
citri str. 306]
gi|21109914|gb|AAM38386.1| general secretion pathway protein F [Xanthomonas axonopodis pv.
citri str. 306]
Length = 391
Score = 42.5 bits (98), Expect = 0.100, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 45 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 102
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 103 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINAL 157
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 158 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 189
>gi|288553597|ref|YP_003425532.1| competence or secretion-like protein [Bacillus pseudofirmus OF4]
gi|288544757|gb|ADC48640.1| competence or secretion-like protein [Bacillus pseudofirmus OF4]
Length = 402
Score = 42.5 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 16/154 (10%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ + L +++GIS+ A + E S L + EL
Sbjct: 59 RVRSQDFVIYLRQFATLLKAGISVVDATVILRE--QTSSKKLKAALHDVEDELRAGNPFS 116
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A EN + ++ G ++ D L L S + + + +A
Sbjct: 117 QAAENQKKVFPP-----LFVNMAKAGELGGNLDDILERLASYYEKQHKTKQKVMSA---- 167
Query: 297 KLTVPMIIFFLPVLILVII----GPAILSIIDTM 326
++ P+++ F+ ++I++ + P + +
Sbjct: 168 -MSYPIVVGFVAIIIVIFLLSYVVPTFADMFASF 200
>gi|218290592|ref|ZP_03494694.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239376|gb|EED06573.1| hypothetical protein AaLAA1DRAFT_2280 [Alicyclobacillus
acidocaldarius LAA1]
Length = 286
Score = 42.5 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 4/167 (2%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + LL F + + + C P L + +++ +
Sbjct: 69 LAWTGLALVGALLPQVFGDPLWMSFGLAALCACLPFPVFRVLKTRYVWRVEKGLRETALP 128
Query: 190 LLICV-ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNRTQ 247
L + V E+ + A+ + + E A + + A + +
Sbjct: 129 LGLSVLEATEDVGLAIEDILRHGKD--PVIQREFEAIRARVKALGLPPEDALVEHASESG 186
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + Q RYG + R ++++ + + + +A +
Sbjct: 187 IPAFQWLAQYTRTLKRYGANPSTIWRDVLTDLQDQAQFRSMMRAKTA 233
>gi|295112043|emb|CBL28793.1| Type II secretory pathway, component PulF [Synergistetes bacterium
SGP1]
Length = 382
Score = 42.1 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 13/145 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R + + L + SGI + QALR + P + L +
Sbjct: 244 RGINEQLTLALVTSHLSTLLRSGIPLVQALR-----MASSMDPRARRWLDCAEMVKAGHR 298
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A RT A+++ G + +L + + R E+ + +
Sbjct: 299 FDRAL----ERTGFPE---EIVAVVRVGEMGGELSQALSNVSGQCREIAQSRMERLSTLM 351
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAI 319
P + + + + ++L I+ P
Sbjct: 352 EPMMVLLLGVSV-GFIVLAILTPVF 375
>gi|313127312|ref|YP_004037582.1| archaeal flagella assembly protein j [Halogeometricum borinquense
DSM 11551]
gi|312293677|gb|ADQ68137.1| archaeal flagella assembly protein J [Halogeometricum borinquense
DSM 11551]
Length = 636
Score = 42.1 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 15/197 (7%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L + + L+ + + V+L GYV + P ++ + + R D +
Sbjct: 362 ATLAFVPLGVVASLVAAAAKSNIVDVVLAGYVVYAIPVGVVAVRRARLDGAKDRELKDFV 421
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN--------RQVAF 239
+ V G +A+ VA ++ PLS+++ L R A
Sbjct: 422 HAISGHVSLGRPFPEAVEHVAREVEL--GPLSDDVADLALNLRLTSPNTGTDEDLRTAAL 479
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F R +I + G+ G L SE + EK+A G +
Sbjct: 480 DRFVERVGTPMAEQTIGLVIGALDAGSDTGTVFETLQSEV---GRLYHEKRALRSG--ML 534
Query: 300 VPMIIFFLPVLILVIIG 316
V + + + L++V I
Sbjct: 535 VYVAVGWTTALLVVGIT 551
>gi|218672463|ref|ZP_03522132.1| probable pilus assembly protein [Rhizobium etli GR56]
Length = 168
Score = 42.1 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 50/135 (37%), Gaps = 14/135 (10%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
E+ R + + + S+ R +L++ ++K + ++ ++L AG S
Sbjct: 48 EVDRVKVKAARDRVQELSKRRKSVQDNLKD-LEKRQHEKTRKTLSMKSRLLQAGLPI--S 104
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ ++ + + L + + + + + G P + L+
Sbjct: 105 VGKFYLISAIFASVLLFGAFVVGASW-----------MVMIGIAVVAGLGLPRWVLGFLI 153
Query: 173 QKRQSSIKRAWPDAL 187
++RQ+ P+AL
Sbjct: 154 KRRQNKFLNELPNAL 168
>gi|218961672|ref|YP_001741447.1| type IV pilus biogenesis protein PilC [Candidatus Cloacamonas
acidaminovorans]
gi|167730329|emb|CAO81241.1| type IV pilus biogenesis protein PilC [Candidatus Cloacamonas
acidaminovorans]
Length = 417
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 16/164 (9%), Positives = 50/164 (30%), Gaps = 8/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
+ + + R ++ L +G++I++A+ + + +S ++ +
Sbjct: 56 LFDKVMLAIYKFRTGVSLKSLVFFTRQLSTMFSAGLTIEKAISDLEK--EEKSKKFAKVL 113
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
++ + A + AL+ + ++ L L
Sbjct: 114 RKLSDDIRKGYSLSEAMQQHPG-----VFNPLYIALVTAGEVSGTLHTVLDELADYLEKM 168
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ +A P + + + + F+ + I P +
Sbjct: 169 EDTRRKVYSALAYP-IFIVIFLCFVVWGMFYYIIPMFADVYANF 211
>gi|269798144|ref|YP_003312044.1| type II secretion system protein [Veillonella parvula DSM 2008]
gi|269094773|gb|ACZ24764.1| type II secretion system protein [Veillonella parvula DSM 2008]
Length = 391
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 66/167 (39%), Gaps = 15/167 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ + + + +K + + D L + +ESG+ + +AL+ + + G
Sbjct: 36 GYKIYRISLQDEKKKHKWN-HTMVVDVTYQLGLLIESGVPLRRALQLLCQGKRGLL---- 90
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ A + + AL++S ++G+SL+ +
Sbjct: 91 --YTALYESIERGQTLSQAL-------RSEGCPPIALALLESGEAAGTLGESLQYISRHY 141
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
ER ++ + +A + L + +++ ++ ++ I P+ ++ TM
Sbjct: 142 DWERQLKQKVISA-ISYPLFLLLMMNIFFLVTILFIIPSFENVFTTM 187
>gi|15669091|ref|NP_247896.1| flagellar assembly protein J [Methanocaldococcus jannaschii DSM
2661]
gi|3024920|sp|Q58311|FLAJ_METJA RecName: Full=Flagella accessory protein J
gi|1591576|gb|AAB98904.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 562
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 8/221 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R L+ ++ +I I+ I+ F + L + +IL+ +G+ P +
Sbjct: 11 RVGLKPRDYLLRIVLPALITSIVLILLGFMLFSGIILYIYLLLPIIILVSAIGY--PYIA 68
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + K I + + ++ L+ ++E+ E L +
Sbjct: 69 LDSQKNK----INERLHIFITKFGTLSITDLNRKDLLKILSEEREELGELAKESEKLYVL 124
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A RT + L + G + + L +
Sbjct: 125 TDKWGRSLAEACRFLAQRTPSSEFADFLDRLAYALDSGEELKEFLIKEQDIVMDDYAAFY 184
Query: 288 EKKAASLGPKLTVPM--IIFFLPVLILVIIGPAILSIIDTM 326
++ SL + + + L I+ P +L
Sbjct: 185 KRMLYSLDMYKELYVSAMTSIAFFLAFSILVPFLLPYNFVF 225
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/189 (11%), Positives = 66/189 (34%), Gaps = 4/189 (2%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
++L G + + L ++ I+ +IL ++ + PF +++
Sbjct: 252 DRLWHTGEKPTETDIKLRKWLIISVILVVILLPFLLWAKYIVGLSPFSQMPYMILVALGF 311
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRRVAEDIGGQSVPL 218
A +++ +++ + +PD L L V + G + +L ++ PL
Sbjct: 312 TPLAIGGFVALKEEEKVKRKEFVFPDFLRSLGDSVSAKGGGMVSSLEYLSNH---DFGPL 368
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ ++ L+ + ++ F + ++ + + +G + ++
Sbjct: 369 THDIKRLYKRLALGIDSNKSWRLFGFDSCSYLIQLFSDIFSRCIYFGGDPKTAAEIISKN 428
Query: 279 TRSERLMEA 287
R +
Sbjct: 429 FRKIVQLRK 437
>gi|257413705|ref|ZP_05591766.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257202608|gb|EEV00893.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
Length = 122
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+E+ + A++ + + A F R + + + LI R G ++L
Sbjct: 11 EMFQKELDIVCADMRS-SSYEAALTRFEARLNSPQLSDVVRGLIGVLR-GDDGAVYFQML 68
Query: 276 VSETRSERLMEAEKKAASLGPKL---TVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + L + KAA + PK+ + M++ FL IIG I+ + T+
Sbjct: 69 THDFKQAELQRLKAKAAKIPPKIRVFSFAMLLCFLATYFA-IIGYEIIKSMGTL 121
>gi|84622429|ref|YP_449801.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84366369|dbj|BAE67527.1| general secretion pathway protein F [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 405
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRDKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|332670514|ref|YP_004453522.1| Type II secretion system F domain-containing protein [Cellulomonas
fimi ATCC 484]
gi|332339552|gb|AEE46135.1| Type II secretion system F domain protein [Cellulomonas fimi ATCC
484]
Length = 410
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L ++SG+S+ +AL ++E +S PL++ + +++ A
Sbjct: 73 LAVMSRQLATMIDSGLSLLRALAILSE--QTESKPLAKVLAQVRSDVEVGVAFSTALGKH 130
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++++ G + ++L + + +E + + K+A +T P+
Sbjct: 131 PTVFPP-----LMINMVKAGEVGGFLDETLVSVANNFEAEVKLRGKIKSA-----MTYPV 180
Query: 303 IIFFLPVL----ILVIIGPAILSIIDTMK 327
++F + +L +L+ I P + ++
Sbjct: 181 VVFVVAILATTGMLLFIVPIFAGMFSSLG 209
>gi|55980763|ref|YP_144060.1| pilus assembly protein PilC [Thermus thermophilus HB8]
gi|55772176|dbj|BAD70617.1| pilus assembly protein PilC [Thermus thermophilus HB8]
Length = 406
Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+++ QAL + ++ E + ++ A
Sbjct: 67 LAIFSRQLATMLGAGLTLLQALAILER--QTENRKFREILKQVRTDVEGGMAFSEALSK- 123
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
L+++ + L L S E + + ++A +T P+
Sbjct: 124 -----HKIFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELRGKIRSA-----MTYPV 173
Query: 303 IIFFLPV----LILVIIGPAILSIIDTMK 327
I+F V +L I P I+ +
Sbjct: 174 IVFVFAVGVAYFLLTGIVPQFAQILTDLG 202
>gi|152967731|ref|YP_001363515.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151362248|gb|ABS05251.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 286
Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 20/236 (8%)
Query: 84 VKKLNLKAILVDE--NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKL 141
+++ + + L AAG R + + P+ L+ G++ +
Sbjct: 22 WERVPSRTARRSPWARVRELLDAAGMREVPAPAL--------PLACLLAGLVSAVAVTGI 73
Query: 142 LEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISID 201
+ + ++R+ WPD +D L V +G S+
Sbjct: 74 GRVLVLGLAAGTAAAVLP-----VAAVRSRARRRRQEAAAQWPDVVDTLASAVRAGASLP 128
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
+A+ +A S P + + L +
Sbjct: 129 EAVCALAVRGPRSSRPAFARFAAAHR---ASGAFEPELRRLQDELADPVFDRLAATLRMT 185
Query: 262 DRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+ G +G +LR L R ++ E A ++ + P ++L ++
Sbjct: 186 RQVGGSDLGTTLRTLSGYLREDQRTRGELLARQSWT-VSAARLAVAAPWVVLALLA 240
>gi|332158825|ref|YP_004424104.1| flagellar assembly protein J [Pyrococcus sp. NA2]
gi|331034288|gb|AEC52100.1| flagellar assembly protein J [Pyrococcus sp. NA2]
Length = 571
Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 6/210 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ L+ II + I I + +L++ P L ++ + + +
Sbjct: 16 PKDYIRRILLPGIIGSGVLFIAIGLFTRLIQLPRGLVFFMYLIPVIIAIYVAAYPYLSAD 75
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SF 231
KR SI P + + S I L+ +A + ++ EM +
Sbjct: 76 SKRL-SINSKLPYFITYFAVLSTSEIGRTDILKVLAS--DPKLGAIASEMKKVYIIVDKL 132
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ A RT + L S G + D L + E
Sbjct: 133 HRSLPEALRFLARRTPSKVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYEGAL 192
Query: 292 ASLGPKLTVP--MIIFFLPVLILVIIGPAI 319
L + +II + +IIGP I
Sbjct: 193 YDLDIFKEIYESIIIAIVFAGAFMIIGPII 222
>gi|325920916|ref|ZP_08182809.1| Type II secretory pathway component [Xanthomonas gardneri ATCC
19865]
gi|325548598|gb|EGD19559.1| Type II secretory pathway component [Xanthomonas gardneri ATCC
19865]
Length = 405
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLSTLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R + + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|222099572|ref|YP_002534140.1| General secretion pathway protein F [Thermotoga neapolitana DSM
4359]
gi|221571962|gb|ACM22774.1| General secretion pathway protein F [Thermotoga neapolitana DSM
4359]
Length = 399
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L I + +GI I +AL +A S+ I E++ + + +
Sbjct: 65 FCRQLSIMISAGIRIKEALNILARQ-----EVFSKRFRKIILEIAINVETGDTLADAFRK 119
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ N +++++ G + +LR S + ++ E K+A + P+ +
Sbjct: 120 VGV--FDNVLISMLEAGEEGGVLDRTLRRAADFYESVKRLQDEVKSA-----MAYPLFVL 172
Query: 306 FLPVLILVIIG 316
F V+I+++I
Sbjct: 173 FFAVVIVLVIS 183
>gi|313764978|gb|EFS36342.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA1]
gi|313815462|gb|EFS53176.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA1]
gi|313829026|gb|EFS66740.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA2]
gi|314916257|gb|EFS80088.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA4]
gi|314917527|gb|EFS81358.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA1]
gi|314921861|gb|EFS85692.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA3]
gi|314930875|gb|EFS94706.1| type II secretion system F domain protein [Propionibacterium acnes
HL067PA1]
gi|314955330|gb|EFS99735.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA1]
gi|314959202|gb|EFT03304.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA1]
gi|314969037|gb|EFT13135.1| type II secretion system F domain protein [Propionibacterium acnes
HL037PA1]
gi|315099724|gb|EFT71700.1| type II secretion system F domain protein [Propionibacterium acnes
HL059PA2]
gi|315102363|gb|EFT74339.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA1]
gi|315109820|gb|EFT81796.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA2]
gi|327334603|gb|EGE76314.1| membrane spanning protein [Propionibacterium acnes HL097PA1]
gi|327454294|gb|EGF00949.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA3]
gi|327456359|gb|EGF03014.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA2]
gi|328756053|gb|EGF69669.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA1]
gi|328758898|gb|EGF72514.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA2]
Length = 293
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R PL E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQ---APEPLIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQS-DRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + +R GT +L L + + E +
Sbjct: 155 DTRSALQGLADDLDSADADQVIAAIMMATERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|313679704|ref|YP_004057443.1| type II secretion system f domain [Oceanithermus profundus DSM
14977]
gi|313152419|gb|ADR36270.1| Type II secretion system F domain [Oceanithermus profundus DSM
14977]
Length = 406
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ I QA+ + ++ + + ++ + A
Sbjct: 70 FSRQLATMLSAGLPIVQAIAILER--QTENKAFQKLLKEIRTDVEGGSSFSDAL------ 121
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T+ L+++ ++ L L + + + + K+A +T P+I+
Sbjct: 122 TKHKVFSRLYVNLVRAGETSGTLDGVLDRLATFLEKDLELRGKIKSA-----MTYPVIVL 176
Query: 306 FLPV----LILVIIGPAILSIIDTMK 327
+ +L I P I+ +
Sbjct: 177 VFALLVTYFLLTGIVPQFAQILTDLG 202
>gi|239624654|ref|ZP_04667685.1| type II secretion system protein [Clostridiales bacterium
1_7_47_FAA]
gi|239521040|gb|EEQ60906.1| type II secretion system protein [Clostridiales bacterium
1_7_47FAA]
Length = 403
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 10/143 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P L + +G+ + AL E PL + ++ + A E
Sbjct: 68 LPPLCRQLSAMLAAGVPLSHALAVSYESAQD--GPLRDNLMRLRESIHKGSTLFEAMEEM 125
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVP 301
+IQ+ + L + R E + + A + L
Sbjct: 126 PGVFPN-----LLVYMIQTGESSGKLDVMLGTMAEYYDREEEMNGKVRAAMTYPVILLGV 180
Query: 302 MIIFFLPVLILVIIGPAILSIID 324
I+ V +L + P S++
Sbjct: 181 TIMSS--VFMLTTVLPQFASMMK 201
>gi|208701906|ref|YP_002267171.1| hypothetical protein BCH308197_B0004 [Bacillus cereus H3081.97]
gi|228943664|ref|ZP_04106085.1| hypothetical protein bthur0008_62190 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228956195|ref|ZP_04118078.1| hypothetical protein bthur0006_54850 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|208658198|gb|ACI30564.1| hypothetical protein BCH308197_B0004 [Bacillus cereus H3081.97]
gi|228803512|gb|EEM50248.1| hypothetical protein bthur0006_54850 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228816016|gb|EEM62220.1| hypothetical protein bthur0008_62190 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326943375|gb|AEA19270.1| hypothetical protein CT43_P127088 [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 323
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 6/191 (3%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK-RQSSIKRAWPDA 186
+ + +F + Y + + IG P V I + R + +
Sbjct: 89 FLFASMLVFVITVSVLYFLIHDLVFALGIGITFGILPYVAIRYRLTMLRLKTQYAFLIEY 148
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL---SFLPNRQVAFENFY 243
L + I + + ++ L + ++ L + A F
Sbjct: 149 HVLFQNYQSTSKDIYYTMLNAVK--ETKNKELKHIYMKLLSSLQKDRGNLEFERAVNVFS 206
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + L ++ I SL L ++ + + K L +
Sbjct: 207 YSINSTFAKRFAKLLKKAHIDRGDITMSLMDLNADIKKRKQDIQTDKTRKLETVILGYSP 266
Query: 304 IFFLPVLILVI 314
+ P++I +
Sbjct: 267 MVLFPLMIFLA 277
>gi|295109281|emb|CBL23234.1| Type II secretory pathway, component PulF [Ruminococcus obeum
A2-162]
Length = 404
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 50/144 (34%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ ++G+ + +AL+ + E + L + + + + +
Sbjct: 65 LSVFCRQFVSITQAGVPMKEALQMMTEQTENKW--LKKATADVLVNVEKGNTLADSMASI 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ V + S+ S + + E ++A + A++ P + +
Sbjct: 123 PDIFPPMLVNMVA-----AGESSGSLEMSFNRMATHFEKEAKLKATIRKATIYPIILICA 177
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+I + ++L+ + P + + +
Sbjct: 178 VIGVI-AVMLLYVIPIFIDMFADL 200
>gi|15838119|ref|NP_298807.1| general secretory pathway protein F [Xylella fastidiosa 9a5c]
gi|9106552|gb|AAF84327.1|AE003981_9 general secretory pathway protein F [Xylella fastidiosa 9a5c]
Length = 405
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 51/144 (35%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + + + + + +A E
Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKS--RRIIGDVCDIVRGGTPLSIALER- 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q + ++ G ++ ++L+ L +++ A+ A + P + + +
Sbjct: 125 ----QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFV 180
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L +L + P ++ +++
Sbjct: 181 VGGAL-AFLLGYVVPQFGAMYESL 203
>gi|257052044|ref|YP_003129877.1| flagellar assembly protein J [Halorhabdus utahensis DSM 12940]
gi|256690807|gb|ACV11144.1| type II secretion system protein [Halorhabdus utahensis DSM 12940]
Length = 581
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 25/207 (12%), Positives = 64/207 (30%), Gaps = 5/207 (2%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+ I F I D + + + + + P + I +K +
Sbjct: 296 VFGFISFGGFAGISPITLDMIFFFWDPVPLSIYAVFPITPLLIPGLIIRQEEKK-IKARD 354
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +P + L + S A+ + PLSE + L+ + A+
Sbjct: 355 QEYPSFIRALGSTEGAKQSTTGAVLESLR--EKEFGPLSENIDNLYKRLNMRIEPEKAWR 412
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+F ++ ++ ++ + + G S ++ + ++ + L
Sbjct: 413 HFTAESRSYLIQTFSEMYLIGRKMGGSPKQLGELISENMNEVLQLRQQRDQET--TTLIG 470
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
+ IG +++I+ M
Sbjct: 471 VLYGISAAATFAFFIGLQVVNILSEMS 497
>gi|28198639|ref|NP_778953.1| general secretory pathway protein F [Xylella fastidiosa Temecula1]
gi|182681323|ref|YP_001829483.1| type II secretion system protein [Xylella fastidiosa M23]
gi|28056723|gb|AAO28602.1| general secretory pathway protein F [Xylella fastidiosa Temecula1]
gi|182631433|gb|ACB92209.1| type II secretion system protein [Xylella fastidiosa M23]
gi|307579773|gb|ADN63742.1| general secretion pathway protein F [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 405
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 51/144 (35%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + + + + + +A E
Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKS--RRIIGDVCDIVRGGTPLSIALER- 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q + ++ G ++ ++L+ L +++ A+ A + P + + +
Sbjct: 125 ----QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFV 180
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L +L + P ++ +++
Sbjct: 181 VGGAL-AFLLGYVVPQFGAMYESL 203
>gi|14521685|ref|NP_127161.1| flagellar assembly protein J [Pyrococcus abyssi GE5]
gi|5458904|emb|CAB50391.1| flaJ flagella-related protein J [Pyrococcus abyssi GE5]
Length = 572
Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 52/177 (29%), Gaps = 4/177 (2%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L L+ ++ + I + + +++ P L ++ + + +
Sbjct: 19 PRTYLRRILLPGLLGSFVLFIVVSVFTRMIPLPRGLVFFMYLIPIIIAIYV-AAYPYLAA 77
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL-SF 231
++ SI P + + S I L+ +A + ++ EM +
Sbjct: 78 DSKRISINSKLPYFITYFAVLSTSEIGRTDILKVLAS--DPKLGAIAGEMKKVYMIVDKL 135
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ AF RT + L S G + D L + E
Sbjct: 136 HRSLPEAFRFLAKRTPSRVFADFLDRLAYSLDSGVELKDYLFQEQQTVMDDYQTFYE 192
>gi|294793881|ref|ZP_06759018.1| putative bacterial type II secretion system protein F domain
protein [Veillonella sp. 3_1_44]
gi|294455451|gb|EFG23823.1| putative bacterial type II secretion system protein F domain
protein [Veillonella sp. 3_1_44]
Length = 391
Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 65/167 (38%), Gaps = 15/167 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ + + + +K + + D L + +ESG+ + +AL+ + + G
Sbjct: 36 GYRIYRISLQDERKKHKWN-HTMVVDVTYQLGLLIESGVPLRRALQLLCQGKRGLL---- 90
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ A + + AL++S ++G+SL+ +
Sbjct: 91 --YTALYESIERGQTLSQAL-------RSEGCPPIALALLESGEAAGTLGESLQYISRHY 141
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
ER ++ + +A + L + +++ ++ ++ I P+ + TM
Sbjct: 142 DWERQLKQKVMSA-ISYPLFLLLMMNIFFLVTILFIIPSFEQVFTTM 187
>gi|294630591|ref|ZP_06709151.1| integral membrane protein [Streptomyces sp. e14]
gi|292833924|gb|EFF92273.1| integral membrane protein [Streptomyces sp. e14]
Length = 283
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 4/113 (3%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L V +G +AL A D GG +A F + A R +
Sbjct: 118 LAGEVRAGRQPGEALLCAARDSGG----FGAAEAAVLAAARFGGDVPGALAAAARRPGAE 173
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+R + G + L L + R++R + +A G + T M
Sbjct: 174 GLRGLAACWRVTVDQGAGLAAGLDRLEAALRADRDQRCDLRAQLAGARATAVM 226
>gi|289449641|ref|YP_003475052.1| hypothetical protein HMPREF0868_0732 [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184188|gb|ADC90613.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 545
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 65/199 (32%), Gaps = 7/199 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
R ++ LG+I +F +L L V + + + + + +R
Sbjct: 14 RYRETVLLGALGLILMFPVIRLYTDNLILNVLLTLPLTWPPVHCLKLLL---ASRRARLY 70
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQ 236
+ + L ++ + G++ A D+ + L +++ L+
Sbjct: 71 RLIFGHFLQIMSAELTGGMTFTNAFTGAIADLVLITGTRNRLMQQLCNASGMLAAHLPAA 130
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ N++ + + R ++ + + + EA+ A S
Sbjct: 131 QVLDELSNQSVCREAKPILKIFSLQLRNNGNMNNLCKFATTMVNDLNDTEAQITADS-NK 189
Query: 297 KLTVPMIIFFLPVLILVII 315
+ I+ +P ++ I+
Sbjct: 190 QTVEAFIMAAMPYIMSAIL 208
>gi|219682692|ref|YP_002469075.1| type II secretion system protein precursor [Bifidobacterium
animalis subsp. lactis AD011]
gi|219620342|gb|ACL28499.1| type II secretion system protein precursor [Bifidobacterium
animalis subsp. lactis AD011]
Length = 209
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 6/143 (4%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L LL + G++I +AL + GG ++ + A L A+ +
Sbjct: 70 LLQLLEAAIAQGVAIPRALECIGACCGGAC---AQVLGHVSAALLRGVCWDEAWAVLEHD 126
Query: 246 TQMDC---VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ A + L + G S + + + E++A+ L +L +PM
Sbjct: 127 GSSPASSALGLACRTLRAAWEDGVSPLPQIHAAIEQMDGSERARIEQRASRLSVRLLLPM 186
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
+ LP +L+ + P I+S +
Sbjct: 187 GLCLLPAFLLIAVVPTIMSFMRM 209
>gi|260771242|ref|ZP_05880169.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972]
gi|260613839|gb|EEX39031.1| type 4 fimbrial assembly protein PilC [Vibrio furnissii CIP 102972]
Length = 408
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ I QAL+ V ++ + + + A R
Sbjct: 73 LTRQLSTMLTTGVPIVQALKLVGDNHR--KAEMKSILAQVTKGVEAGTPMSKAM-----R 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T LI + ++ + L + + A+ A + P + + ++
Sbjct: 126 TASPHFDALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKVIKALIYPAMVM-LVAL 184
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ L+L ++ P S+
Sbjct: 185 GVSYLMLTMVIPEFESMFKGFG 206
>gi|57639984|ref|YP_182462.1| flagellar assembly protein J [Thermococcus kodakarensis KOD1]
gi|57158308|dbj|BAD84238.1| archaeal flagella-related membrane protein J, DUF110 family
[Thermococcus kodakarensis KOD1]
Length = 579
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 73/218 (33%), Gaps = 6/218 (2%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+++ S+ L L+ + + I I ++L L+V ++ + A + +
Sbjct: 11 KADLSMEAYLKGILLPYLGISAVLFIVIGFITRILPVARSLQVLMFLIPIVLIIYA-AAY 69
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ ++ SI P + + S + + +A+ + ++ E+
Sbjct: 70 PYVVADSKKISINSKMPYFITYFAVLSTSEMGRSDLVAVLAK--DPKLGAIASELKKVHT 127
Query: 228 ELS-FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
++ + AF RT + L S G + + L +
Sbjct: 128 IVNKLHLSMPEAFRFLARRTPSKMFADFLDRLAYSLDSGVDLKEYLFQEQKTVMDDYETF 187
Query: 287 AEKKAASLGPKLTVP--MIIFFLPVLILVIIGPAILSI 322
E L + +II + + +IIGP I +
Sbjct: 188 YEGALYDLDVFKEIYESIIISVVFIASFIIIGPIITGM 225
>gi|305664034|ref|YP_003860322.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
gi|304378603|gb|ADM28442.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
Length = 536
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 10/179 (5%)
Query: 154 ILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGG 213
LIG+ F I ++ + +I+ + + L + + + Q+LR + +
Sbjct: 278 FLIGFGVFMIIPGIIGRRIENKVKNIESFFTVFIRSLGLAFTTLRNYAQSLRSI---LRT 334
Query: 214 QSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLR 273
L++ + + L +R +A F T + VR + G
Sbjct: 335 DFGELTKPLQRLYSRLRNGVDRNIAMYFFIGETGSETVRRGMDIFYDAVESGGDPTKVGE 394
Query: 274 VLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL------PVLILVIIGPAILSIIDTM 326
+L + + +++ V I+ L V LVI+ ++ + TM
Sbjct: 395 ILSTTI-QRIINLRKQREQIARAFQGVIYILHILTVALAEIVFTLVILFQQLIQAMGTM 452
>gi|296268208|ref|YP_003650840.1| type II secretion system protein [Thermobispora bispora DSM 43833]
gi|296090995|gb|ADG86947.1| type II secretion system protein [Thermobispora bispora DSM 43833]
Length = 263
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 3/116 (2%)
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + + +G +AL I P + +A + + A +
Sbjct: 84 ELCHGIHAELVAGRMPGEAL---VNAIAAVEPPDPAALTPVVAAVRDGGDVAAALLSAAP 140
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + S G + + L + R E A GP+ T
Sbjct: 141 EEGGEGLVRLAACWRVSTSVGGGLAALVDRLAASLREAEAHRQEVAAQLAGPRATA 196
>gi|307151679|ref|YP_003887063.1| type II secretion system F domain-containing protein [Cyanothece
sp. PCC 7822]
gi|306981907|gb|ADN13788.1| Type II secretion system F domain protein [Cyanothece sp. PCC 7822]
Length = 404
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 50/140 (35%), Gaps = 10/140 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L +++ G + L + + +E+ A + +
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLSDQCGNKK--LKKALAGISSEVQQGSPLSEAMAKYPDC 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL---GPKLTVPM 302
+++++ G + + L L ++ + K+A + +
Sbjct: 127 -----FDQLYVSMVEAGETGGVLDEVLARLAKLLEDMARLKNQIKSAMAYPVAVGILAVI 181
Query: 303 IIFFLPVLILVIIGPAILSI 322
+ F + V ++ + L +
Sbjct: 182 VFFAMTVFLIPVFAKIFLDL 201
>gi|270308518|ref|YP_003330576.1| type II secretion system protein [Dehalococcoides sp. VS]
gi|270154410|gb|ACZ62248.1| type II secretion system protein [Dehalococcoides sp. VS]
Length = 401
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +ESG I +L + E + + + + ++ + +A
Sbjct: 67 FSRQLALLLESGTDIVTSLELLQE--QTTNKLFRDIIGEIVNDIRGGSSLSLAMSKHPKA 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+I + G S+ LR L + + E + K+A P + + I
Sbjct: 125 FPP-----LYHRVIAAGEQGGSLEIVLRNLANFVQRNVETEKKIKSALTYPGVVAVVGIL 179
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
L +L++ + PA S+ M
Sbjct: 180 VL-LLMVTFVLPAFTSLYSQMG 200
>gi|156937801|ref|YP_001435597.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
gi|156566785|gb|ABU82190.1| type II secretion system protein [Ignicoccus hospitalis KIN4/I]
Length = 311
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 11/206 (5%)
Query: 117 LVVRLVVPIIFLILGIIW-------IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+++ +V+PI+ + +G++ +F + P++ I I + A
Sbjct: 8 IIISIVLPIVGIFVGVLLYQPPGDKVFEALPRIYLPYRPETLRAIGISLMLIIAGPAIGY 67
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+R S+ P L L + V SG+ ++ A +++ G P + I L
Sbjct: 68 YKFMRRVESVITNTPLMLQDLAVTVRSGVKVNAAFVEISDRDYGALSPYVRRIASMIYLL 127
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE- 288
+ A R + ++ G + L R R E E
Sbjct: 128 --GLDLLDAIRLVIRELP-KETRKYFYFIEEAYESGGRAMEVLDKASELARRIREFELER 184
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVI 314
+K + + ++ F+ ++
Sbjct: 185 EKTLKNQGFIILFSVLIFVATAAILY 210
>gi|315179152|gb|ADT86066.1| type IV pilin biogenesis protein PilC [Vibrio furnissii NCTC 11218]
Length = 408
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ I QAL+ V ++ + + + A R
Sbjct: 73 LTRQLSTMLTTGVPIVQALKLVGDNHR--KAEMKSILAQVTKGVEAGTPMSKAM-----R 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T LI + ++ + L + + A+ A + P + + ++
Sbjct: 126 TASPHFDALYVDLIATGEQSGNLAEVFERLATYREKSEQLRAKVIKALIYPAMVM-LVAL 184
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ L+L ++ P S+
Sbjct: 185 GVSYLMLTMVIPEFESMFKGFG 206
>gi|262044851|ref|ZP_06017894.1| protein transporter HofC [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037820|gb|EEW39048.1| protein transporter HofC [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 155
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 8/135 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V E + + + A + A
Sbjct: 15 QQLSLIFTILALTQSAGISFLQGLQSVEESL--SCPLWRQRLAQARALIVQGEPIWQALS 72
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T LI++ ++ L L R + A+ AA L P + V
Sbjct: 73 RCGGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLV 126
Query: 301 PMIIFFLPVLILVII 315
+++ + +
Sbjct: 127 ITGSLVGILVVAMYL 141
>gi|87309424|ref|ZP_01091559.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM
3645]
gi|87287732|gb|EAQ79631.1| type IV pilus biogenesis protein PilC [Blastopirellula marina DSM
3645]
Length = 397
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ L + V++GI++ A+ V+ ++ L ++ + + A +
Sbjct: 61 IIYFTNQLAVMVDTGINLSTAIESVSS--QEKNEALKTLLVDIRRSVESGEDFSAALGKY 118
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+L+++ +G+ L + + R+E + + +AA P + V +
Sbjct: 119 PKH-----FNKTYISLVKASEQTGMLGEMLERIAAYMRNEVEIRNKVRAALAYPAVMVVL 173
Query: 303 IIFFLPVLILVII 315
L+ ++
Sbjct: 174 ATAVTIFLLTYVL 186
>gi|325913939|ref|ZP_08176297.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC
35937]
gi|325539851|gb|EGD11489.1| Type II secretory pathway component [Xanthomonas vesicatoria ATCC
35937]
Length = 405
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 54/153 (35%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLSTLIGAGQPLDRALSILMDLPEDEKS--RRVIGDIRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A E Q ++++ G S+ D+L+ L R ++ + A
Sbjct: 117 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|290512546|ref|ZP_06551912.1| protein transporter HofC [Klebsiella sp. 1_1_55]
gi|289774887|gb|EFD82889.1| protein transporter HofC [Klebsiella sp. 1_1_55]
Length = 401
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 8/135 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + ++ A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATL--SCPLWRQRLAQARTLIAQGEPIWQALS 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T LI++ ++ L L R + A+ AA L P + V
Sbjct: 319 RCGGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLV 372
Query: 301 PMIIFFLPVLILVII 315
+++ + +
Sbjct: 373 ITGSLVGILVVAMYL 387
>gi|256389283|ref|YP_003110847.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
gi|256355509|gb|ACU69006.1| integral membrane protein [Catenulispora acidiphila DSM 44928]
Length = 270
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 15/231 (6%)
Query: 96 ENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+L A + L + P + + + + + L
Sbjct: 20 PGARRRLETAVLGAPRGPKWRLRMAGAWPTVLSAIALGVLSAL-------LARSMVLAFL 72
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
+ + + A W ++ + + + + + +G +ALR A G
Sbjct: 73 VPFGAWRAYRAWTAHTARLAVERRQTEIIELCVTICSELHAGREAREALRDAA---VGAC 129
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
L+ + + L + + + + G + ++ L
Sbjct: 130 PDLAVHL---VGPLGTGDDVVTVLRTAAGTPGREALAALAACWQVA-EGGAGMTAAIGEL 185
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
R+ER E A G + + + + LPV+ L+I LS I +
Sbjct: 186 SDGLRAERAQRRELDAELAGIRTSARL-LAMLPVVGLIIGSGMGLSPIPML 235
>gi|16081951|ref|NP_394361.1| hypothetical protein Ta0902 [Thermoplasma acidophilum DSM 1728]
gi|10640179|emb|CAC12031.1| conserved hypothetical membrane protein [Thermoplasma acidophilum]
Length = 284
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 3/210 (1%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R L+ I ++ I+ + + + LI V
Sbjct: 39 RMNAGALTYLISAYEYAISGAVIVILAGVLSYVFAHSIWIIILSISFLIYAVALYYLFTL 98
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
V+ +S+I+ PDAL + SG+ D + +A ++E +
Sbjct: 99 PEIRVKSIKSNIEHVMPDALAVAYGLSLSGVPADTMISELAGIKEL--GEFAKESQRVNS 156
Query: 228 EL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ + + A E + + S + + LR + + +
Sbjct: 157 FMYAMGYDFLSALERSEKVSASPDFSRFVAGIRLSIILNSDLTAFLRDRLDYYVRVQENK 216
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ SLG + + ++L + G
Sbjct: 217 SKLSLDSLGLAAESYVAVAIAFPILLYLTG 246
>gi|71902056|ref|ZP_00684097.1| type II secretion system protein [Xylella fastidiosa Ann-1]
gi|71728184|gb|EAO30374.1| type II secretion system protein [Xylella fastidiosa Ann-1]
Length = 405
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 52/144 (36%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + + + L + + +A E
Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKSRL--IIGDVCDIVRGGTPLSIALER- 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q + ++ G ++ ++L+ L +++ A+ A + P + + +
Sbjct: 125 ----QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFV 180
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L +L + P ++ +++
Sbjct: 181 VGGAL-AFLLGYVVPQFGAMYESL 203
>gi|71274718|ref|ZP_00651006.1| type II secretion system protein [Xylella fastidiosa Dixon]
gi|71899601|ref|ZP_00681756.1| type II secretion system protein [Xylella fastidiosa Ann-1]
gi|71164450|gb|EAO14164.1| type II secretion system protein [Xylella fastidiosa Dixon]
gi|71730643|gb|EAO32719.1| type II secretion system protein [Xylella fastidiosa Ann-1]
Length = 405
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 51/144 (35%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + + + + + +A E
Sbjct: 68 LIHFTQQLAALLGAGQPLDRALSILTDLPDNEKS--RRIIGDVCDIVRGGTPLSIALER- 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q + ++ G ++ ++L+ L +++ A+ A + P + + +
Sbjct: 125 ----QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFV 180
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L +L + P ++ +++
Sbjct: 181 VGGAL-AFLLGYVVPQFGAMYESL 203
>gi|283835166|ref|ZP_06354907.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
gi|291069467|gb|EFE07576.1| protein transport protein HofC [Citrobacter youngae ATCC 29220]
Length = 400
Score = 41.7 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 10/147 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L V E + S S+ + ++S VA +
Sbjct: 261 QKLTQIFTVLALTQNAGIPFLQGLESVMETLA--SPFWSQRLAQVHHDISAGKPVWVALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ LR L + L +AE AA L P L V
Sbjct: 319 NCG------EFSPLCIQLVRTGEASGSLDAMLRNLAHHHGEKTLSQAENLAALLEPALLV 372
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
+ ++V + I + D M
Sbjct: 373 ITGLII--GTLVVAMYLPIFHLGDAMS 397
>gi|269795082|ref|YP_003314537.1| type II secretory pathway, component PulF [Sanguibacter keddieii
DSM 10542]
gi|269097267|gb|ACZ21703.1| type II secretory pathway, component PulF [Sanguibacter keddieii
DSM 10542]
Length = 416
Score = 41.7 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ V +G+S+ + L +A+ ++ PL++ + + +++ + A
Sbjct: 79 LAIMARQMATMVSAGLSLIRTLGILAD--QTENKPLAKVLGIVRSDVETGLSLSNALVKH 136
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++++ G + SL +E + A+ K+A +T P+
Sbjct: 137 PEAFPP-----IMVNIVRAGETGGFLEKSLLSAADNFEAEVKLRAKVKSA-----MTYPV 186
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
++ F+ + ++ + I+ I M
Sbjct: 187 VVLFIAIAAVIGMLLFIVPIFKDM 210
>gi|218246449|ref|YP_002371820.1| type II secretion system protein [Cyanothece sp. PCC 8801]
gi|257059491|ref|YP_003137379.1| type II secretion system protein [Cyanothece sp. PCC 8802]
gi|218166927|gb|ACK65664.1| type II secretion system protein [Cyanothece sp. PCC 8801]
gi|256589657|gb|ACV00544.1| type II secretion system protein [Cyanothece sp. PCC 8802]
Length = 404
Score = 41.7 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L ++E + L + + AE+ + A
Sbjct: 69 FSRQFSVMINAGVAIVRCLGILSE--QASNPKLKKALGAISAEVQQGVSLSEAMGKHPEC 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++++ G + + L L ++ + K+A P +TV ++
Sbjct: 127 -----FDELYVSMVEAGEMGGVLDEVLNRLSKLLEDMARLQNQIKSAMAYP-VTVGVLAV 180
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ + + + P I + +
Sbjct: 181 LVFFGMTIFLIPVFAKIFEDLG 202
>gi|288937124|ref|YP_003441183.1| type II secretion system F domain protein [Klebsiella variicola
At-22]
gi|288891833|gb|ADC60151.1| Type II secretion system F domain protein [Klebsiella variicola
At-22]
Length = 401
Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 8/135 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + ++ A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATL--SCPLWRQRLAQARTLIAQGEPIWQALS 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T LI++ ++ L L R + A+ AA L P + V
Sbjct: 319 RCGGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLV 372
Query: 301 PMIIFFLPVLILVII 315
+L+ + +
Sbjct: 373 ITGSLVGILLVAMYL 387
>gi|91772406|ref|YP_565098.1| flagellar assembly protein J [Methanococcoides burtonii DSM 6242]
gi|91711421|gb|ABE51348.1| type II secretion system protein F domain [Methanococcoides
burtonii DSM 6242]
Length = 539
Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 73/226 (32%), Gaps = 10/226 (4%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + L V IIF +L ++ + + G V
Sbjct: 220 LDKKSKEQTYIYKWLPVTIIFSVLSVVTLTLIPSFFYPVDFYVGIKGFGMILAGLIMLPV 279
Query: 167 WISNLVQ--KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++ K + L I SG+++ +AL ++ L E +
Sbjct: 280 GLAARTDVIKVNKRDESYTTFIRSLGSIVSGSGLTLPKALMKID---PKNLGELREITIE 336
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+L+ + ++ + F + + T + S G ++ S L
Sbjct: 337 LHRKLTIGMDSKLCWNQFVEDSGSYLIHKFTSVFVDSINLGGDAEAVGELVSSSNLELVL 396
Query: 285 MEAEKKAASLG-PKLTVP----MIIFFLPVLILVIIGPAILSIIDT 325
+ +++ S L VP M+ L + ++++ I+S + T
Sbjct: 397 LRMKRERISASFTFLVVPLHLAMVALLLFIGQILMLFTNIISELFT 442
>gi|158312181|ref|YP_001504689.1| type II secretion system protein [Frankia sp. EAN1pec]
gi|158107586|gb|ABW09783.1| type II secretion system protein [Frankia sp. EAN1pec]
Length = 519
Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 34/92 (36%)
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
S+ + R + V A+ +++ G + +L + R E A
Sbjct: 409 SWRADPHRTGRGSNRRRETRVVTATAAAIGRTESSGAKLAATLTRIGDRARQEAHAAAIA 468
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
A G P+ + FLP +L+ + P ++
Sbjct: 469 AARRAGVLAVAPLGLCFLPAFLLLGVVPVVIG 500
>gi|315446283|ref|YP_004079162.1| Flp pilus assembly protein TadC [Mycobacterium sp. Spyr1]
gi|315264586|gb|ADU01328.1| Flp pilus assembly protein TadC [Mycobacterium sp. Spyr1]
Length = 197
Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 10/158 (6%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ +LDLL C+ SG+++ A VA L + L+
Sbjct: 33 AARQVDGDALTVAASLDLLAACLTSGMAVSTAAGAVAASAPPAMAAL---LSRAADLLAL 89
Query: 232 LPNRQVAFEN--FYNRTQMD-----CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ A+ N R + + + +S G+++ + L + R++ +
Sbjct: 90 GADPARAWANPDAGERNSTQNPVGGHLESFLRMARRSASSGSALAHGVEELAVQLRADAV 149
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A +A + P+ + +LP + + I P + +
Sbjct: 150 DAAGARAERAAVLMAGPLGLCYLPAFLCLGIVPVVAGL 187
>gi|15597872|ref|NP_251366.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
gi|296388862|ref|ZP_06878337.1| type II secretion system protein [Pseudomonas aeruginosa PAb1]
gi|9948747|gb|AAG06064.1|AE004695_17 probable type II secretion system protein [Pseudomonas aeruginosa
PAO1]
Length = 395
Score = 41.3 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ A+ L + +G+S+ A+ A++ G + L + L +
Sbjct: 51 RRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLISALQAMANGLRQGQS 108
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
V E+ + L+ + ++ +LR ++ ER AE + A +
Sbjct: 109 FPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGALI 163
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIID 324
P + V + + L + ++ P ++++
Sbjct: 164 YPAILVLSGVLAVATLFVFVV-PKFANLLN 192
>gi|313902411|ref|ZP_07835814.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
DSM 13965]
gi|313467342|gb|EFR62853.1| hypothetical protein ThesuDRAFT_1381 [Thermaerobacter subterraneus
DSM 13965]
Length = 260
Score = 41.3 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
++ +++G + QA A ++ L +A L + A ++ +T +
Sbjct: 90 VIAHLQAGRPLRQAWIEAAREVAA--PVLEPAKGEFLAALGAGLPLEEALGLWHGQTGLR 147
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+R R G + ++ R +RL AE A +
Sbjct: 148 ALRRCQAVASAHRRTGGDVTGPTLAVIQSLREQRLAWAEVAARTAE 193
>gi|313893588|ref|ZP_07827157.1| type II secretion system protein F domain protein [Veillonella sp.
oral taxon 158 str. F0412]
gi|313441859|gb|EFR60282.1| type II secretion system protein F domain protein [Veillonella sp.
oral taxon 158 str. F0412]
Length = 391
Score = 41.3 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 63/167 (37%), Gaps = 15/167 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ + + +K + + D L + +ESG+ + +AL+ + + G
Sbjct: 36 GYKIYKISLQVEKKKHKWNHA-MVVDVTYQLGLLIESGVPLRRALQLLCQGKRG------ 88
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ A + + AL++S ++G+SL+ +
Sbjct: 89 LLYTALYESIERGQTLSQAL-------RSEGCPAIALALLESGEAAGTLGESLQYISRHY 141
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
ER + + +A + + + +++ ++ ++ I P+ + TM
Sbjct: 142 DWERQLRQKVMSA-ISYPIFLLLMMNVFFLVTILFIIPSFEKVFTTM 187
>gi|188993089|ref|YP_001905099.1| Type II secretory pathway component [Xanthomonas campestris pv.
campestris str. B100]
gi|73916935|gb|AAC27376.3| XpsF [Xanthomonas campestris]
gi|167734849|emb|CAP53060.1| Type II secretory pathway component [Xanthomonas campestris pv.
campestris]
Length = 405
Score = 41.3 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 54/153 (35%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ + L + +G +D+AL + + + +
Sbjct: 59 RKKPFDNASLVQFTQQLATLIGAGQPLDRALSILMDLPEDDKS--RRVIADIRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
VA E Q ++++ G S+ D+L+ L R ++ + A
Sbjct: 117 PLSVALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|330011992|ref|ZP_08307209.1| bacterial type II secretion system protein F domain protein
[Klebsiella sp. MS 92-3]
gi|328533981|gb|EGF60633.1| bacterial type II secretion system protein F domain protein
[Klebsiella sp. MS 92-3]
Length = 163
Score = 41.3 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 8/135 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V E + + + A + A
Sbjct: 23 QQLSLIFTILALTQSAGISFLQGLQSVEESL--SCPLWRQRLAQARALIVQGEPIWQALS 80
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T LI++ ++ L L R + A+ AA L P + V
Sbjct: 81 RCGGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAHLEPMMLV 134
Query: 301 PMIIFFLPVLILVII 315
+++ + +
Sbjct: 135 ITGSLVGILVVAMYL 149
>gi|209525547|ref|ZP_03274086.1| type II secretion system protein [Arthrospira maxima CS-328]
gi|209494046|gb|EDZ94362.1| type II secretion system protein [Arthrospira maxima CS-328]
Length = 377
Score = 41.3 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+GIS+ + L + E + L + A++ + F
Sbjct: 37 LAIFARQFAAMFNAGISMARCLSVLGEQCE--NAKLKRAINTLRADVEEGEELSSSMRKF 94
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D +++ + G + ++L L ++E K+A+ PK TV
Sbjct: 95 P-----DVFDQLFVSMVSAGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPK-TVLF 148
Query: 303 IIFFLPVLILVIIGPAILSIID 324
I + + + P I +
Sbjct: 149 IAIAVFFGMATFLLPTFSGIFE 170
>gi|256393177|ref|YP_003114741.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
gi|256359403|gb|ACU72900.1| type II secretion system protein [Catenulispora acidiphila DSM
44928]
Length = 296
Score = 41.3 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 4/185 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ I + F A + + P ++ + + + A + L
Sbjct: 56 VLISAAAAVAVGAFTGWPVAAGIAALAAWALPGMFGKDGAAADEQARIEAIATFTEALRD 115
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ + ++Q++ A + + E+ A L A F
Sbjct: 116 TLGAAAGLEQSILAAAANAPAP---IRAEVAELAANLKAGTRLDEALRTFAADLGDATGD 172
Query: 253 NATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
AL+ + R ++G+ L L R + A + +V +I+ F+ +
Sbjct: 173 LVVAALVLASRQQARNLGEVLGELARYAREQAAQSMRITADRARTRSSVRIIVAFVFAVA 232
Query: 312 LVIIG 316
V++G
Sbjct: 233 GVLVG 237
>gi|73749037|ref|YP_308276.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1]
gi|73660753|emb|CAI83360.1| pilin biogenesis protein [Dehalococcoides sp. CBDB1]
Length = 401
Score = 41.3 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +ESG I +L + E + E + + ++ + +A
Sbjct: 67 FSRQLALLLESGTDIVTSLELLQE--QTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKA 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+I + G S+ LR L S + E + K+A P + + I
Sbjct: 125 FPP-----LYHRVIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALTYPGVVAVVGIL 179
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
L +L++ + PA S+ M
Sbjct: 180 VL-LLMVTFVLPAFTSLYSQMG 200
>gi|313107717|ref|ZP_07793899.1| putative type II secretion system protein [Pseudomonas aeruginosa
39016]
gi|310880401|gb|EFQ38995.1| putative type II secretion system protein [Pseudomonas aeruginosa
39016]
Length = 395
Score = 41.3 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ A+ L + +G+S+ A+ A++ G + L + L +
Sbjct: 51 RRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLISALQAMANGLRQGQS 108
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
V E+ + L+ + ++ +LR ++ ER AE + A +
Sbjct: 109 FPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGALI 163
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIID 324
P + V + + L + ++ P ++++
Sbjct: 164 YPAILVLSGVLAVATLFVFVV-PKFANLLN 192
>gi|206580419|ref|YP_002240423.1| protein transport protein HofC [Klebsiella pneumoniae 342]
gi|206569477|gb|ACI11253.1| protein transport protein HofC [Klebsiella pneumoniae 342]
Length = 401
Score = 41.3 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 8/135 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V + + + ++ A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEATL--SCPLWRQRLAQARTLIAQGEPIWQALS 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T LI++ ++ L L R + A+ AA L P + V
Sbjct: 319 RCGGFTP------LCLQLIRTGESAGALDQMLENLAHHHREQTHQRADSLAAHLEPIMLV 372
Query: 301 PMIIFFLPVLILVII 315
+++ + +
Sbjct: 373 ITGSLVGILVVAMYL 387
>gi|170730041|ref|YP_001775474.1| general secretory pathway protein F [Xylella fastidiosa M12]
gi|167964834|gb|ACA11844.1| general secretory pathway protein F [Xylella fastidiosa M12]
Length = 405
Score = 41.3 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 52/144 (36%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L+ + +G +D+AL + + + + + +A E
Sbjct: 68 LIHFTQQLVALLGAGQPLDRALSILTDLPDNEKS--RRIIGDVCDIVRGGTPLSIALER- 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q + ++ G ++ ++L+ L +++ A+ A + P + + +
Sbjct: 125 ----QHGVFSRLYVTMARAGESGGNMPETLQRLADYLERNQVVRAKVINALIYPVILIFV 180
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L +L + P ++ +++
Sbjct: 181 VGGAL-AFLLGYVVPQFGAMYESL 203
>gi|147677482|ref|YP_001211697.1| type II secretory pathway, component PulF [Pelotomaculum
thermopropionicum SI]
gi|146273579|dbj|BAF59328.1| type II secretory pathway, component PulF [Pelotomaculum
thermopropionicum SI]
Length = 402
Score = 41.3 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 13/143 (9%), Positives = 48/143 (33%), Gaps = 10/143 (6%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ ++ L + +GI + + L +++ ++ LS+ +
Sbjct: 55 KAKRKVKLPDVLFFTRQLAAMLAAGIPLTRCLNTLSK--QSENASLSDIASEMARNVEAG 112
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
N A + + ++++ G S+ + L L + ++ + ++A
Sbjct: 113 MNLSEALKAYPE-----VFSAMYVDMVRAGEIGGSMEEMLNRLADQLERDKRLRDSIRSA 167
Query: 293 S---LGPKLTVPMIIFFLPVLIL 312
+ +++ + ++
Sbjct: 168 TFYPATVMAFALLVVLVMLTFVV 190
>gi|288918386|ref|ZP_06412739.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288350281|gb|EFC84505.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 492
Score = 41.3 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
L A + + V + A+ +++ G + +L + + R E
Sbjct: 383 ARLSRALGIGTPPGRA--GSARQREAQTVLSTVAAIGRTESSGARLATTLTRISTRARQE 440
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
A A G P+ + FLP +L+ + P I+
Sbjct: 441 THAAAIGAARRAGVLAVAPLGLCFLPAFLLLGVVPIIIG 479
>gi|167771226|ref|ZP_02443279.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM
17241]
gi|283795333|ref|ZP_06344486.1| conserved hypothetical protein [Clostridium sp. M62/1]
gi|167666645|gb|EDS10775.1| hypothetical protein ANACOL_02584 [Anaerotruncus colihominis DSM
17241]
gi|291076989|gb|EFE14353.1| conserved hypothetical protein [Clostridium sp. M62/1]
Length = 310
Score = 41.3 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 26/204 (12%), Positives = 70/204 (34%), Gaps = 15/204 (7%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + ++ + I+F + ++ + + V V ++G P
Sbjct: 67 LKGTGRADRYEAIKRLSLILFAVGAVLALLIGN----------VYMVPILGIGFSLIPIW 116
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ + + + A+ ++ + +R V E++ + P+ +
Sbjct: 117 YLRSTAASYKKHLNEELETAISIITTSYLRTEDL---IRSVKENLPYINEPVKANFEAFV 173
Query: 227 AELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E N A + + LIQ + S+ ++L + + R++
Sbjct: 174 YEAELINANITSAINSLKMKIPNRVFHEWCGTLIQC-QSDRSMKNTLPTINQKFSDVRVV 232
Query: 286 EAEKKAASLGPKLTVPMIIFFLPV 309
++E +A GP+ +IF +
Sbjct: 233 QSELEAMMQGPRREAITMIFLVIA 256
>gi|147669803|ref|YP_001214621.1| type II secretion system protein [Dehalococcoides sp. BAV1]
gi|146270751|gb|ABQ17743.1| type II secretion system protein [Dehalococcoides sp. BAV1]
Length = 401
Score = 41.3 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +ESG I +L + E + E + + ++ + +A
Sbjct: 67 FSRQLALLLESGTDIVTSLELLQE--QTTNKLFREIIGEIVNDIRGGSSLSLAMSKHPKA 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+I + G S+ LR L S + E + K+A P + + I
Sbjct: 125 FPP-----LYHRVIAAGEQGGSLEVVLRNLASFVQRNVETEKKVKSALTYPGVVAVVGIL 179
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
L +L++ + PA S+ M
Sbjct: 180 VL-LLMVTFVLPAFTSLYSQMG 200
>gi|134298672|ref|YP_001112168.1| hypothetical protein Dred_0805 [Desulfotomaculum reducens MI-1]
gi|134051372|gb|ABO49343.1| hypothetical protein Dred_0805 [Desulfotomaculum reducens MI-1]
Length = 289
Score = 41.3 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 15/199 (7%), Positives = 50/199 (25%), Gaps = 6/199 (3%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ + F A++L P ++ + ++ + + A+ + +
Sbjct: 64 AMVGLVLGFMAGEFISSTVALLLAPSGFVLGPRIYELAVRGYKRKKFRTLFTRAVSDMAV 123
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ ++ +A P+S+ + +A + +
Sbjct: 124 VARNSTILEG----IAHVAENAKPPVSDIFSYISESIQKGEKDYLAIIKAAEVYNVPELL 179
Query: 253 NATQALIQSDRYGT--SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
++ G + L + + + A + + L
Sbjct: 180 PLADSVRIIADLGGGKRAPEILTSAAEMVKHQNRFIDKVNIAVSEMLWDAAISMLILVAC 239
Query: 311 ILVIIGPAILSIIDTMKDH 329
+ P ++ H
Sbjct: 240 FAWLALPEDSVYRLSLSKH 258
>gi|166363152|ref|YP_001655425.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843]
gi|166085525|dbj|BAG00233.1| pilin biogenesis protein [Microcystis aeruginosa NIES-843]
Length = 404
Score = 41.3 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 12/131 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G++I + L + + G + + + AE+ A
Sbjct: 69 FSRQFSVMINAGVAIVRCLGVLGDQCGNLK--MKKALQAISAEVQQGTPLSEAMAKHPEC 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++++ G + + L L ++ + K+A +T P+ +
Sbjct: 127 -----FDELYVSMVEAGETGGVLDEVLNRLSKLLEDMARLKNQIKSA-----MTYPVAVG 176
Query: 306 FLPVLILVIIG 316
L V++ +
Sbjct: 177 ILAVIVFFGMT 187
>gi|126459953|ref|YP_001056231.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
gi|126249674|gb|ABO08765.1| type II secretion system protein [Pyrobaculum calidifontis JCM
11548]
Length = 256
Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 2/136 (1%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ F I +G W+ ++ P L ++ V +G+ + +A
Sbjct: 2 FSFLYGWVLWIGLGVGAVLGVVGWLGFRRAVFVYRLEGQIPQVLRMVADAVGAGMGLREA 61
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263
VA G + + A + R + + R
Sbjct: 62 FEVVA--GMGLYPANAVFRRVLSLAEVGGLAVDEALWRVASELPSPNFRRFALIVAEGAR 119
Query: 264 YGTSIGDSLRVLVSET 279
G +G+ L V
Sbjct: 120 SGARLGEVLGVAARSF 135
>gi|83338437|gb|ABC11888.1| PilC [Aliivibrio fischeri]
Length = 412
Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 8/155 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + ++ L + SG+ + Q+L+ +AE+ + + +
Sbjct: 64 KMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAEN--NTKAEMKSILHQVCLSIEAG 121
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A T + LI + S+ + L + ++ A
Sbjct: 122 TQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFSRLAEYREKSDALRSKVIKA 176
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ P + ++ + +L+L + P +I
Sbjct: 177 MIYPSMVF-LVAITVTILMLTFVIPEFENIFKGFG 210
>gi|107102197|ref|ZP_01366115.1| hypothetical protein PaerPA_01003248 [Pseudomonas aeruginosa PACS2]
Length = 395
Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ A+ L + +G+S+ A+ A++ G + L + L +
Sbjct: 51 RRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLITALQAMANGLRQGQS 108
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
V E+ + L+ + ++ +LR ++ ER AE + A +
Sbjct: 109 FPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGALI 163
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIID 324
P + V + + L + ++ P ++++
Sbjct: 164 YPAILVLSGVLAVATLFVFVV-PKFANLLN 192
>gi|323484184|ref|ZP_08089554.1| hypothetical protein HMPREF9474_01305 [Clostridium symbiosum
WAL-14163]
gi|323402626|gb|EGA94954.1| hypothetical protein HMPREF9474_01305 [Clostridium symbiosum
WAL-14163]
Length = 310
Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 26/204 (12%), Positives = 70/204 (34%), Gaps = 15/204 (7%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ + ++ + I+F + ++ + + V V ++G P
Sbjct: 67 LKGTGRADRYEAIKRLSLILFAVGAVLALLIGN----------VYMVPILGIGFSLIPIW 116
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ + + + A+ ++ + +R V E++ + P+ +
Sbjct: 117 YLRSTAASYKKHLNEELETAISIITTSYLRTEDL---IRSVKENLPYINEPVKANFEAFV 173
Query: 227 AELSF-LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E N A + + LIQ + S+ ++L + + R++
Sbjct: 174 YEAELINANITSAINSLKMKIPNRVFHEWCGTLIQC-QSDRSMKNTLPTINQKFSDVRVV 232
Query: 286 EAEKKAASLGPKLTVPMIIFFLPV 309
++E +A GP+ +IF +
Sbjct: 233 QSELEAMMQGPRREAITMIFLVIA 256
>gi|325969463|ref|YP_004245655.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
gi|323708666|gb|ADY02153.1| type II secretion system protein [Vulcanisaeta moutnovskia 768-28]
Length = 276
Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 68/178 (38%), Gaps = 5/178 (2%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
F+I+ +I + ++ L + +L + + + V+++ V R S +R +
Sbjct: 41 FIIIALIMAYVLIPIITLRDILLIVTTVL--LIDYLSVLVYMNAKVYVRTSHFERYLANT 98
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFYNR 245
L ++ V SG+++++ + +A I + ++ E + + + + A NR
Sbjct: 99 LMIMTPLVASGVTLEELIDTLA--IIERDPYIAREFKIILKDAREGGMDILTALRASLNR 156
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ ++ D L + + + + L + V ++
Sbjct: 157 VPSRTYNEVFSLITETYLISANLADILMLKLEYLVRNKYNKLRSATQVLSLFMEVYLV 214
>gi|239929828|ref|ZP_04686781.1| hypothetical protein SghaA1_16497 [Streptomyces ghanaensis ATCC
14672]
Length = 290
Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 5/173 (2%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLIC 193
W ++ V V+ V ++ ++ + S + A L
Sbjct: 68 WWSPAAGMVLAVLGASVLPVVAGAAGVPLLRRVRLAARERRVRESREDAVIALCGALAGE 127
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
V +G AL D GG L + +A F + A + +R
Sbjct: 128 VRAGRQPGAALLTAVRDSGG----LGDAQAAVLAAARFGGDVPEALAAAAQP-GAEGLRG 182
Query: 254 ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ G + D L L + R+ER A+ +A G + T M+
Sbjct: 183 LAACWRVAVDQGAGLADGLDRLEAALRAERDRRADLRAQLAGARATAVMLAGL 235
>gi|237729402|ref|ZP_04559883.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
gi|226909131|gb|EEH95049.1| type IV pilin biogenesis protein [Citrobacter sp. 30_2]
Length = 400
Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI Q L V E + + S+ + L ++S +A +
Sbjct: 261 QKLTQIFTVLALTQNAGIPFLQGLESVTETLA--NPFWSQRLALVQQDISSGKPIWLALK 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N L+++ S+ LR L A+ K + + +
Sbjct: 319 NSC------EFSPLCIQLVRTGEASGSLDAMLRNLAHHHGE--KTLAQAKNLAALLEPAL 370
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
+I + ++V + I + D M
Sbjct: 371 LVITGLIIGTLVVAMYLPIFHLGDAMS 397
>gi|108801766|ref|YP_641963.1| type II secretion system protein [Mycobacterium sp. MCS]
gi|119870917|ref|YP_940869.1| type II secretion system protein [Mycobacterium sp. KMS]
gi|108772185|gb|ABG10907.1| type II secretion system protein [Mycobacterium sp. MCS]
gi|119697006|gb|ABL94079.1| type II secretion system protein [Mycobacterium sp. KMS]
Length = 192
Score = 41.3 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
+ L+ + A+ + D R + +S GT++ + L +E+RS
Sbjct: 83 LARAADMLALGADAATAWSDPGTPLD-DHARALMRLARRSAESGTALAQGVADLAAESRS 141
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ A A G + P+ + +LP + + I P ++ +
Sbjct: 142 DAADAARATAERAGVLIAAPLGVCYLPAFLCLGIVPVVVGL 182
>gi|220929813|ref|YP_002506722.1| type II secretion system protein [Clostridium cellulolyticum H10]
gi|220000141|gb|ACL76742.1| type II secretion system protein [Clostridium cellulolyticum H10]
Length = 405
Score = 40.9 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 20/162 (12%), Positives = 55/162 (33%), Gaps = 10/162 (6%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P I V KR + + +G+S+ L + Q+ L + M
Sbjct: 48 PGKEIEFKVHKRVKV--KDLSILCRQFHTMLNAGVSVIGCLDLL--RSQTQNPTLRDAMS 103
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ + + + ++++ ++ L L + +
Sbjct: 104 QLYDDVQKGKTLSESMKLLSKVFPV-----LMVSMVEVGEVSGTLEQVLERLSVQFEKDI 158
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++++ A + P + I + ++V I P +S++++
Sbjct: 159 KVKSKVSTAMMYP-AVIGCIALVMVTFMIVFIVPKFVSMVNS 199
>gi|21230136|ref|NP_636053.1| general secretion pathway protein F [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769873|ref|YP_244635.1| general secretion pathway protein F [Xanthomonas campestris pv.
campestris str. 8004]
gi|83303434|sp|P31744|GSPF_XANCP RecName: Full=General secretion pathway protein F
gi|21111668|gb|AAM39977.1| general secretion pathway protein F [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575205|gb|AAY50615.1| general secretion pathway protein F [Xanthomonas campestris pv.
campestris str. 8004]
Length = 405
Score = 40.9 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + +
Sbjct: 59 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDDKS--RRVIADIRDTVRGGA 116
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
VA E Q ++++ G S+ D+L+ L R ++ + A
Sbjct: 117 PLSVALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALKGKVINAL 171
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P + + ++ L + +L + P + +++
Sbjct: 172 IYPAILLAVVGCAL-LFLLGYVVPQFAQMYESL 203
>gi|306819826|ref|ZP_07453480.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304552073|gb|EFM40010.1| conserved hypothetical protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 341
Score = 40.9 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 54/152 (35%), Gaps = 9/152 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
K+ + L + +SG+ +D+A+ +++ + L + L +
Sbjct: 2 KKNALTNSELSLFCYQLSLIFKSGLPLDEAMSVFTDEM--STPTLKKIALSIKESVDNGE 59
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + D +++ ++ + L L + + + + A
Sbjct: 60 PIYEAVKK------HDEFPKYMTGMMEIAYNTGNLEEELSRLSTYYQEVERLNQKVSNAV 113
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ P + +++ + ++V + P IID+
Sbjct: 114 VYPVILTGLMLIII-TFLVVKVIPMFSEIIDS 144
>gi|134298900|ref|YP_001112396.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
gi|134051600|gb|ABO49571.1| type II secretion system protein [Desulfotomaculum reducens MI-1]
Length = 401
Score = 40.9 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 16/148 (10%), Positives = 50/148 (33%), Gaps = 8/148 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
++ L + +GI + + L ++E + L+ +++
Sbjct: 56 KRKVKLGELAFFSRQLAAMLTAGIPLTRCLYTLSE--QTSNPILASCAGEVASKVESGIG 113
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A + ++++ S+ + L L + ++L+ KAA+
Sbjct: 114 FSEALSSHK-----AIFSTMYIEMVKAGEMSGSLNEILTRLSLQLEKDKLLRDSLKAATF 168
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSI 322
P + + + + ++ + P + +
Sbjct: 169 YPSIVL-TFAGLVILAMMFFVVPIFIGM 195
>gi|116050662|ref|YP_790518.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115585883|gb|ABJ11898.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 395
Score = 40.9 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ A+ L + +G+S+ A+ A++ G + L + L +
Sbjct: 51 RRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLISALQAMANGLRQGQS 108
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
V E+ + L+ + ++ +LR ++ ER AE + A +
Sbjct: 109 FPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGALI 163
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIID 324
P + V + + L + ++ P ++++
Sbjct: 164 YPAILVLSGVLAVATLFVFVV-PKFANLLN 192
>gi|254241103|ref|ZP_04934425.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
gi|126194481|gb|EAZ58544.1| hypothetical protein PA2G_01790 [Pseudomonas aeruginosa 2192]
Length = 395
Score = 40.9 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ A+ L + +G+S+ A+ A++ G + L + L +
Sbjct: 51 RRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLITALQAMANGLRQGQS 108
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
V E+ + L+ + ++ +LR ++ ER AE + A +
Sbjct: 109 FPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGALI 163
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIID 324
P + V + + L + ++ P ++++
Sbjct: 164 YPAILVLSGVLAVATLFVFVV-PKFANLLN 192
>gi|254424300|ref|ZP_05038018.1| Bacterial type II secretion system protein F domain [Synechococcus
sp. PCC 7335]
gi|196191789|gb|EDX86753.1| Bacterial type II secretion system protein F domain [Synechococcus
sp. PCC 7335]
Length = 406
Score = 40.9 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 49/131 (37%), Gaps = 12/131 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
V SG+++ + + +++ + L ++ +++ + + R
Sbjct: 70 FSRQFAALVSSGVALVRGIGILSDQCP--NPKLKIALMQINSDVQQGTSLSESM-----R 122
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D + +++Q+ G + + L L ++ + K+A + P+ +
Sbjct: 123 KHPDSFDDLYVSMVQAGEVGGVLDEVLNRLAKLLEDLNRLQNQIKSA-----MAYPVTVG 177
Query: 306 FLPVLILVIIG 316
FL V I V +
Sbjct: 178 FLAVAIFVGLT 188
>gi|254172381|ref|ZP_04879056.1| flagellar accessory protein FabJ [Thermococcus sp. AM4]
gi|214033310|gb|EEB74137.1| flagellar accessory protein FabJ [Thermococcus sp. AM4]
Length = 576
Score = 40.9 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 10/219 (4%)
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
A + + +L+ +V+ + I+ I + L V+L+ Y
Sbjct: 12 KADLDMKTYVRKILIPNVVISAVLFIVASIISRLFMLSSALTMMLYAIPVVLLIYAA--- 68
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
++ ++ SI P + + S + ++ +A + ++ E+
Sbjct: 69 --LYPYIQADSKKISINSRIPYFITYFAVLSTSEMGRADLIKVLAS--DPKLGAIASELK 124
Query: 224 LTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ + AF RT + L S G + + L +
Sbjct: 125 KVYIIVDKLHRSMPEAFRFLARRTPSKVFADFLDRLAYSLDSGVDMKEYLFQEQKTVMDD 184
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAI 319
E L + I V + +IIGP I
Sbjct: 185 YETFYEGALYDLDVFKEIYESIIISVVFMASFIIIGPLI 223
>gi|42523100|ref|NP_968480.1| general secretion pathway protein F [Bdellovibrio bacteriovorus
HD100]
gi|39575305|emb|CAE79473.1| general secretion pathway protein F [Bdellovibrio bacteriovorus
HD100]
Length = 405
Score = 40.9 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L +++ I + AL V+E + + L+E + ++ A +
Sbjct: 67 LSLMTRQLATLIKANIPLVDALTAVSEQVE--NPTLAEALADCKNMVNEGSTLHKAMLKY 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N +++++ S+ L L T ++ + A+ +A P + + +
Sbjct: 125 PN-----VFTTIYVSMVEAGEMSGSLDVILMRLAEFTEAQADLRAKVSSAMTYPVIMLVV 179
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
+ L + +I P ++++ ++
Sbjct: 180 TFGLMGFLFIFLI-PKMVTVFES 201
>gi|116071988|ref|ZP_01469256.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
gi|116065611|gb|EAU71369.1| fimbrial assembly protein PilC-like [Synechococcus sp. BL107]
Length = 357
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 8/153 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R ++ L + ++SG+ + Q L +AE++ + LS+ + + LS
Sbjct: 9 RLKVPQKDLLVFFRQLAVILQSGVPLAQGLILIAENM--TNENLSQCVQRISSRLSAGEE 66
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
R T LI++ G + D L + + + A +
Sbjct: 67 LS-----LSLRQYPKVFEPLTIGLIEAGEAGGILEDVLDRIALLLEERAKIRGQIIGALV 121
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
P + + + + L++ I+ P ++ D M
Sbjct: 122 YPVIVMVLAVSVSLALLIFIV-PRFKAMFDGMG 153
>gi|147920826|ref|YP_685368.1| putative type II secretion system protein, C-terminal fragment
[uncultured methanogenic archaeon RC-I]
gi|110620764|emb|CAJ36042.1| putative bacterial type II secretion system protein, C-terminal
fragment [uncultured methanogenic archaeon RC-I]
Length = 297
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 70/185 (37%), Gaps = 4/185 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++L + + + + +G P+ + S + P+
Sbjct: 24 ILLAATLLGTTAAVAAALLSQPADVIAYVLIMGTLVPAAIAYGITASYDSEVNTRAPELF 83
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRT 246
L + +G SI +AL+RV+ G +S+EM ++E+ + A + R
Sbjct: 84 YDLSEYIGAGGSIIKALKRVS---AGSYGTMSDEMSRVLSEVEDEGLDLAAAMKAMAARV 140
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + ++ + + L+++ ++ R + E+++ L + + +
Sbjct: 141 NNAYISRSVAVICEALTSSSDLEGILKMVAADGRLSMSLLKERRSGLLAAVVVMYLTTII 200
Query: 307 LPVLI 311
L +++
Sbjct: 201 LLLVV 205
>gi|30249238|ref|NP_841308.1| type II secretion system protein [Nitrosomonas europaea ATCC 19718]
gi|30180557|emb|CAD85167.1| Bacterial type II secretion system protein [Nitrosomonas europaea
ATCC 19718]
Length = 406
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 9/130 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + V SG++I+QAL+ V+ G + P + + + A +
Sbjct: 71 FCEQIGTMVGSGLNIEQALQVVSRQKG--NRPSARMARHLLPRIQAGGPLSDALDI---- 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK-AASLGPKLTVPMII 304
+ ++I++ G + + L + + AE A + + V ++I
Sbjct: 125 --EVGMPRYLPSMIRAAESGGRLAEGLETAGRYLQRQASTRAEIANALTYPVIVLVTVMI 182
Query: 305 FFLPVLILVI 314
L VL +VI
Sbjct: 183 ALLIVLTVVI 192
>gi|296242933|ref|YP_003650420.1| type II secretion system F domain-containing protein [Thermosphaera
aggregans DSM 11486]
gi|296095517|gb|ADG91468.1| Type II secretion system F domain protein [Thermosphaera aggregans
DSM 11486]
Length = 571
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 22/208 (10%), Positives = 77/208 (37%), Gaps = 9/208 (4%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
R + +++++ + + II ++ L + + +++L G P+
Sbjct: 265 RPRKRIGLVMLISFLGLTGLFVFAIIAVYLVISLNIFNVEYVALSLMLTGV--SLLPAAV 322
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ + + R + +P + + + + + + + L + A
Sbjct: 323 LVKIHEGRITEYDMFFPAFIRSYGEHLA---VLPNMIESLKPLLIAELGKLRSLLKRVYA 379
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
L + ++A+ F + + + V T I + G +G++ ++ +
Sbjct: 380 RLLNRVDPRIAWGLFADESSSEMVTRGTHIFIDTVETGGDLGEAGALISDHVNELFRLR- 438
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVII 315
A+ + T + ++ + ++++V++
Sbjct: 439 ---ASYIQVFKTFEVTLYLMHLIVIVLL 463
>gi|291296512|ref|YP_003507910.1| type II secretion system protein [Meiothermus ruber DSM 1279]
gi|290471471|gb|ADD28890.1| type II secretion system protein [Meiothermus ruber DSM 1279]
Length = 406
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 17/149 (11%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ I QAL + + + E+ N A
Sbjct: 67 LAIFSRQLATMLNAGLPIVQALAILER--QTEKKKFQSILKEIRTEVEGGANFSEALSKH 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
L+++ ++ L L + +E + + ++A +T P
Sbjct: 125 SL------FTRLYINLVRAGETSGTLDAILDRLATFLENELALRGKIRSA-----MTYPA 173
Query: 303 IIFFLPV----LILVIIGPAILSIIDTMK 327
I+F + +L I P I+ +
Sbjct: 174 IVFVFAIGVTYFLLTGIVPQFAQILTGLG 202
>gi|152968689|ref|YP_001333798.1| type IV pilin biogenesis protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150953538|gb|ABR75568.1| component in type IV pilin biogenesis, transmembrane protein
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 401
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 8/135 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V E + + + A + A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEESL--SCPLWRQRLAQARALIVQGEPIWQALS 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T LI++ ++ L L R + A+ AA L P + V
Sbjct: 319 RCGGFTP------LCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLV 372
Query: 301 PMIIFFLPVLILVII 315
+++ + +
Sbjct: 373 ITGSLVGILVVAMYL 387
>gi|220927958|ref|YP_002504867.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
gi|219998286|gb|ACL74887.1| hypothetical protein Ccel_0505 [Clostridium cellulolyticum H10]
Length = 241
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I+ + L I L Y V +L G + F +S ++KR I+ ++P
Sbjct: 95 IVLIALIIPGELIVGILSHYQAVFNVYITLLFGILIF-LDDSRLSRKIKKRHLEIQLSFP 153
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
D ++ L + + +G+++ +A +++ D Q E + S +
Sbjct: 154 DFINKLALMLNAGLTMSKAWEKISFDSNKQDAFYKEVKKTVSHKASVSND 203
>gi|218891163|ref|YP_002440029.1| putative type II secretion system protein [Pseudomonas aeruginosa
LESB58]
gi|254235656|ref|ZP_04928979.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
gi|126167587|gb|EAZ53098.1| hypothetical protein PACG_01590 [Pseudomonas aeruginosa C3719]
gi|218771388|emb|CAW27155.1| probable type II secretion system protein [Pseudomonas aeruginosa
LESB58]
Length = 395
Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ A+ L + +G+S+ A+ A++ G + L + L +
Sbjct: 51 RRRLKAEELNMAIHELATMLAAGVSMADAVE--AQERGARHPKLITALQAMANGLRQGQS 108
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
V E+ + L+ + ++ +LR ++ ER AE + A +
Sbjct: 109 FPVVLESAGL-----DLPRYVYQLVAAGEMTGNLAGALRDCATQMEYERRTRAELQGALI 163
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIID 324
P + V + + L + ++ P ++++
Sbjct: 164 YPAILVLSGVLAVATLFVFVV-PKFANLLN 192
>gi|145221978|ref|YP_001132656.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
gi|145214464|gb|ABP43868.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
Length = 197
Score = 40.9 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 10/158 (6%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++ +LDLL C+ SG+++ A VA L + L+
Sbjct: 33 AARQVDGDALTVAASLDLLAACLTSGMAVSTAAGAVAASAPPAMAAL---LSRAADLLAL 89
Query: 232 LPNRQVAFEN--FYNRTQMD-----CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ A+ N R + + + +S G+++ + L + R + +
Sbjct: 90 GADPARAWANPDAGERNSTQNPVGGHLESFLRMARRSASSGSALAHGVEELAVQLRVDAV 149
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
A +A + P+ + +LP + + I P + +
Sbjct: 150 DAAGARAERAAVLMAGPLGLCYLPAFLCLGIVPVVAGL 187
>gi|238893085|ref|YP_002917819.1| type IV pilin biogenesis protein [Klebsiella pneumoniae NTUH-K2044]
gi|238545401|dbj|BAH61752.1| type IV pilin biogenesis transmembrane protein [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 401
Score = 40.9 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 8/135 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GIS Q L+ V E + + + A + A
Sbjct: 261 QQLSLIFTILALTQSAGISFLQGLQSVEESL--SCPLWRQRLAQARALIVQGEPIWQALS 318
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
T LI++ ++ L L R + A+ AA L P + V
Sbjct: 319 RCGGFTP------LCLQLIRTGESAGALDQMLENLAHHHRQQTYQRADSLAAHLEPMMLV 372
Query: 301 PMIIFFLPVLILVII 315
+++ + +
Sbjct: 373 ITGSLVGILVVAMYL 387
>gi|224369331|ref|YP_002603495.1| PilC [Desulfobacterium autotrophicum HRM2]
gi|223692048|gb|ACN15331.1| PilC [Desulfobacterium autotrophicum HRM2]
Length = 402
Score = 40.9 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 45/142 (31%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+++G+ + Q L + + + + + A F
Sbjct: 68 FSRQFSTMIDAGLPLLQCLDILHAQQENVT--FKKILKKIKESVESGETFADALAKFP-- 123
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D ++ + G + LR L + ++ + K A P +T+ + +
Sbjct: 124 ---DIFNELFTNMVAAGEAGGILDIILRRLSAYMEKMAKLKKQVKGAMTYPAITLAVAVI 180
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ ++++ +I P +
Sbjct: 181 VVGIILVFVI-PVFAEMFADFG 201
>gi|297617363|ref|YP_003702522.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145200|gb|ADI01957.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 402
Score = 40.9 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 54/160 (33%), Gaps = 8/160 (5%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
W+ + ++ + + + SG+ + L V+ + + + E L
Sbjct: 47 WWLQWRAPVTKKIGSQSLAVLCRQMAMVLRSGMGVSDGLELVSRQVSDRLL--RREALRL 104
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
E+ + A + + + ++ + ++ L + +
Sbjct: 105 YREVLSGRSLSEAM--MAEDSLIPGL---LARMVATGEASGNLEQILHNMSQYYQQRYET 159
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
E K A + P L + + I L + +I P + S++ +
Sbjct: 160 EKRVKGALIYPALLMVVGIGLLAYVFAFLI-PQVESLLHS 198
>gi|297616457|ref|YP_003701616.1| type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297144294|gb|ADI01051.1| Type II secretion system F domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 403
Score = 40.9 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
++SG+ + L+ + + ++ L + + + A +
Sbjct: 69 FTRQFATMIKSGLPLLHCLQVL--QLQARNRHLRQATTGIMRSVRRGLPLWEALAEYP-- 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++++ G + + L L + E ++ K A + P + +
Sbjct: 125 ---SIFSDLYVQMVKAGETGGRLDEVLERLAAHLEKEHEVKQRIKNALIYPCTVAILTLA 181
Query: 306 FLPVLILVIIGPAILSIID 324
+ + + PA S+ +
Sbjct: 182 VV-AFLTSFVVPAFASVFN 199
>gi|299144142|ref|ZP_07037222.1| putative bacterial type II secretion system protein F
[Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518627|gb|EFI42366.1| putative bacterial type II secretion system protein F
[Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 393
Score = 40.9 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 10/149 (6%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR++ L L + V + +I A R + + G+ ++ + +L
Sbjct: 54 KRRTFNNEDLHILLYQLYVLVNAKNTIPSAFRVLLKSYSGKK---NKILKKVYQDLLSAK 110
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
A + + N +I +++ L+ L ++ ++ + + A
Sbjct: 111 PLSDALK------ESGEFPNLVVNMIGVGENSSNMILILKNLSEYYLNKVKLDKKIRNAL 164
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSI 322
P L + F + L+L I+ P +
Sbjct: 165 SYPILLFVVTFFIVNFLMLNIL-PTFAEV 192
>gi|119486410|ref|ZP_01620468.1| type II secretion system protein [Lyngbya sp. PCC 8106]
gi|119456312|gb|EAW37443.1| type II secretion system protein [Lyngbya sp. PCC 8106]
Length = 376
Score = 40.9 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+GI++ + L ++E + L + A++ + F
Sbjct: 36 LAIFARQFAAMFNAGIAMARCLSVLSEQCD--NARLKRALTTIRADVEEGNALSESMRKF 93
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D +++ + G + + L L E+E K+A PK TV
Sbjct: 94 P-----DVFDMLFISMVSAGEVGGVLDEVLERLAVMMEKNHKTESEIKSAMSYPK-TVLF 147
Query: 303 IIFFLPVLILVIIGPAILSIID 324
I + + + + P I +
Sbjct: 148 IALAVFFAMTIFLLPTFAGIFE 169
>gi|116751083|ref|YP_847770.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
gi|116700147|gb|ABK19335.1| type II secretion system protein [Syntrophobacter fumaroxidans
MPOB]
Length = 395
Score = 40.9 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 57/169 (33%), Gaps = 8/169 (4%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G P +++ + L + +G+ +D+AL ++ + +
Sbjct: 35 GRLYPVKIKPVKSHRQRRVPEEHLIRFFFDLSDLLSAGLPVDRALGLISSN--QTNKVFQ 92
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ E+ + A + + N + ++++ ++G LR L
Sbjct: 93 RISKGLLEEVQGGSDLSGALAKYRH-----VFGNLSDHMVRAGEASGTLGPILRRLAEYL 147
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
R ++ + P + + + V++LV + P I + +
Sbjct: 148 EQRRTFRQSLVSSMIYPAILFATSLISM-VVLLVYVIPNFAKIFNDLHQ 195
>gi|121534460|ref|ZP_01666283.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
gi|121306953|gb|EAX47872.1| type II secretion system protein [Thermosinus carboxydivorans Nor1]
Length = 407
Score = 40.9 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 54/160 (33%), Gaps = 8/160 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+L+ + + +++G+ + L + + + L +
Sbjct: 52 FHSLINMVRRVTVKDLAVFCRQFATMIDAGLPLLNCLSILID--QTYNPKLKSAVQDVYR 109
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ A N + +++++ G + + L L E +
Sbjct: 110 KVQEGETLSRALGNHPQVFPV-----IMVSMVEAGELGGVLDEVLNRLAVHFEKEHKLNE 164
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ K+A + P + + M + IL + P +++ + +K
Sbjct: 165 KVKSALVYPAVVIAMAALSV-TFILTFVFPTFMTLFNNLK 203
>gi|288921591|ref|ZP_06415863.1| type II secretion system protein [Frankia sp. EUN1f]
gi|288347009|gb|EFC81314.1| type II secretion system protein [Frankia sp. EUN1f]
Length = 295
Score = 40.9 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 84/304 (27%), Gaps = 18/304 (5%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
T ++ + + G R + + +L ++ + RT
Sbjct: 4 MTIAALSGALVGYGLLVAGRSAAASRRADLGDDLAVLFAEETAARTPTLIRWASRTVRLA 63
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
R + + L ++ ++ RL + + +
Sbjct: 64 DSRGWNRLLRADDTVIAG--------------RTVEAHTASRLGQVLAGIGAIALLATPG 109
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
P ++ G +G + L R+ A DL+ I V G+
Sbjct: 110 VLARLLPPAALPLLILTAGLLGIHLADRPMVRLAAARRQDAALAVAAYTDLVRILVIGGL 169
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ AL AE G + L A + + + +
Sbjct: 170 PLHAALSAAAEAGEGWTFALLRR--SLDDAQLRGLPPDTALTALATDLPIPAFADLARTV 227
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ R G S +L + R+E + A+ ++ +P L + + P
Sbjct: 228 ASALR-GASPVLALEARAAAIRAEETARVRGREAAADAQMELPATAVAL-AFVAFLTYPL 285
Query: 319 ILSI 322
++ I
Sbjct: 286 LVMI 289
>gi|159040453|ref|YP_001539706.1| type II secretion system protein [Salinispora arenicola CNS-205]
gi|157919288|gb|ABW00716.1| type II secretion system protein [Salinispora arenicola CNS-205]
Length = 300
Score = 40.9 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 4/185 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + L + +L+ AP ++ ++R + A + L
Sbjct: 64 LLVGAVFAGALGFLLTGLPVVGLLVAVAVPGAPWLFSVGRAEQRAIARVEAVGEWTRRLK 123
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G + A+ + + EE+ L A L + A F +
Sbjct: 124 DVSATGQGLQAAITGT---VATAPEEIQEEVRLLAARLQAGWLARPALLAFADEIADPVC 180
Query: 252 RNATQALIQSD-RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
ALI G +GD L + S +E E +A P+ V + +
Sbjct: 181 DQVVAALILHLTDRGERLGDVLGSIASAASAEVATRREIEAKRTQPRFAVRFLTGMTLAV 240
Query: 311 ILVII 315
+ +
Sbjct: 241 LAYGL 245
>gi|83338397|gb|ABC11882.1| PilC [Aliivibrio fischeri]
Length = 412
Score = 40.9 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 50/155 (32%), Gaps = 8/155 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + ++ L + SG+ + Q+L+ +AE+ + + +
Sbjct: 64 KMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAEN--NTKAEMKSILHQVCLSIEAG 121
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A T + LI + S+ + L + ++ A
Sbjct: 122 TQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREKSDALRSKVIKA 176
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ P + ++ + +L+L + P +I
Sbjct: 177 MIYPTMVF-LVAITVTILMLTFVIPEFENIFKGFG 210
>gi|303239211|ref|ZP_07325740.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
gi|302593256|gb|EFL62975.1| Type II secretion system F domain protein [Acetivibrio
cellulolyticus CD2]
Length = 404
Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 15/152 (9%), Positives = 53/152 (34%), Gaps = 8/152 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
++ + I +++G+ I + + + + L E + + +
Sbjct: 58 KKKVTTKDLAIFNRQFAIVLQAGVPIASCMDVLKQ--QTTNQTLRECLNDIYENIQKGIS 115
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ R D ++++ + L + ++ + A+ ++A
Sbjct: 116 LSNSM-----RKHEDIFPEIMICMVEAGEVSGQLDIVFERLAKQFENQNAINAKIRSALT 170
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
P + + + + VL++ ++ P+ + I+
Sbjct: 171 YPIIVGVIAVAVIVVLMIFVV-PSFVGILKDF 201
>gi|20091873|ref|NP_617948.1| flagellar assembly protein J [Methanosarcina acetivorans C2A]
gi|19917067|gb|AAM06428.1| flagella accessory protein J [Methanosarcina acetivorans C2A]
Length = 543
Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 8/224 (3%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+S+ + I L + + L + ++ + F G +++ V +
Sbjct: 222 IKSQEQVYIYKWAPLSIALSALAVILLTVIPAFIGSVDFFIDIKGVGMVLAGVILMPVGM 281
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + K + L I SG+++ +AL ++ L +
Sbjct: 282 AANKDIDKINKRDECFTTFIRSLGSIVSGSGLTVPKALLKID---PKNLGELRDMSQELY 338
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+L+ + + + F T + T + + G + ++ S L+
Sbjct: 339 KKLASGLDPALCWGRFVGETGSYLIYKLTSVFVDAVNLGGNAEVVGELVSSSNLELVLLR 398
Query: 287 AE-KKAASLGPKLTVP----MIIFFLPVLILVIIGPAILSIIDT 325
+ ++ A L +P M+ L + ++ I I++ + T
Sbjct: 399 MKRERIAKGFSSLVIPLHVAMVALLLFIGQILTIFSTIITSLFT 442
>gi|301629343|ref|XP_002943802.1| PREDICTED: general secretion pathway protein F-like [Xenopus
(Silurana) tropicalis]
Length = 308
Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 8/136 (5%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L V SG+ +++AL +A++ + + AE++ + A
Sbjct: 75 TRQLAGLVASGLPLERALTALADEAEDERQH--HLVAALRAEVNAGSSFARALTQHPR-- 130
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ A+I + S+G L L + + + A+ A+L P + + +
Sbjct: 131 ---EFSDIYCAVIGAGEASGSLGLVLERLADDLEERQQLRAKIIGAALYPAIVTVVALVI 187
Query: 307 LPVLILVIIGPAILSI 322
+ + ++ + P + +
Sbjct: 188 V-LFLVGYVVPQVAGV 202
>gi|300088313|ref|YP_003758835.1| type II secretion system F domain-containing protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299528046|gb|ADJ26514.1| Type II secretion system F domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 401
Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 15/133 (11%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +ESG I AL + E + + ++ + A
Sbjct: 68 FSRQLALLLESGTDIVTALELLQE--QTTNKTFRTTLGHVANDIRGGSSLSGAMSKHPK- 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA--------SLGPK 297
++ + G ++ LR + + + K+A +
Sbjct: 125 ----VFSPLFHRVLSAGEQGGNLEVVLRNMADFLQRMNETRKKIKSALTYPIVVAVVAVI 180
Query: 298 LTVPMIIFFLPVL 310
+ ++IF LP
Sbjct: 181 VVAVLMIFVLPTF 193
>gi|257413619|ref|ZP_04743594.2| hypothetical protein ROSINTL182_06850 [Roseburia intestinalis
L1-82]
gi|257202942|gb|EEV01227.1| hypothetical protein ROSINTL182_06850 [Roseburia intestinalis
L1-82]
Length = 507
Score = 40.6 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 92/247 (37%), Gaps = 34/247 (13%)
Query: 92 ILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG 151
+N+ K+ G+ + + +++ + +I +G ++ G
Sbjct: 6 FWNPKNLQKKVDMYGYHFSWKTHAVMIFLALAGVIG--IGAVFRLKAG-----------G 52
Query: 152 AVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI 211
VI + V P + + + + + ++ +L + I AL+ E
Sbjct: 53 VVIALTAVIMMLPVLVLDMYHKMYEQKRFADAAEYMEQMLYAFQKTGKILSALKETREIF 112
Query: 212 GGQSVPLSEEMLLTIAELSFL------PNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ + I +L F + A E ++ Q ++ + LI ++ +G
Sbjct: 113 EE--GKMRSCIEQVILKLEFGDFSAGENVFESALEPIESQYQCPKIKMLHELLINAEEHG 170
Query: 266 TSIGDSLRVLVSET----RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
+ +S +L+ + R ++AEKK + ++ V++ VI+ L
Sbjct: 171 GEMSESALLLLEDIELWKRRGYQLQAEKKKSHTDNIIS---------VIVSVILCATALY 221
Query: 322 IIDTMKD 328
++D+MKD
Sbjct: 222 VLDSMKD 228
>gi|110667162|ref|YP_656973.1| hypothetical protein HQ1189A [Haloquadratum walsbyi DSM 16790]
gi|109624909|emb|CAJ51319.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
Length = 611
Score = 40.6 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 7/183 (3%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
L V I+ G + +G P+ + A + G + V+K+
Sbjct: 308 LPAGSVRGIVAASAGALIGWGIGS-TVVPWGGPIAACGIGVGAGLTV-QYHPAAAVRKQV 365
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ I+ DA ++ V +G +++ +L A+ G++ + + L + Q
Sbjct: 366 ADIESGLADATAVIGRRVGAGEAVETSLTAAADATIGETSTVFKTAAGVQHRLR--VDIQ 423
Query: 237 VAFENFY---NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
AF Y + D R + + R G G++L+ L R+ + E+ +
Sbjct: 424 QAFLGPYGALSDVPSDRARATAVLIGVAAREGRPAGETLQTLADHLRTVQQTESAARREL 483
Query: 294 LGP 296
Sbjct: 484 ASI 486
>gi|261211521|ref|ZP_05925809.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341]
gi|260839476|gb|EEX66102.1| type 4 fimbrial assembly protein PilC [Vibrio sp. RC341]
Length = 408
Score = 40.6 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ I QAL+ V ++ + + + A R
Sbjct: 73 LTRQLATMLTTGVPIVQALKLVGDNHR--KAEMKSILAQITKGVEAGTPLSKAM-----R 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T L+++ ++ + L + + A+ A + P + V ++
Sbjct: 126 TASPHFDALYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVV-LVAL 184
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ L+L ++ P S+
Sbjct: 185 GVSYLMLTMVIPEFESMFKGFG 206
>gi|91200636|emb|CAJ73686.1| similar to general secretory system type II protein, membrane
component [Candidatus Kuenenia stuttgartiensis]
Length = 417
Score = 40.6 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L ++G+ I ++L+ +A + L + +L I + A
Sbjct: 76 SKHLTLFTRQLSTLQDAGLPIIRSLQILAAQLK--KGMLKKTVLKVIENIEGGSTFSGAL 133
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++++ S+ LR L + + A + P +
Sbjct: 134 ARHPR-----VFDKLYVNIVKAGEISGSLDIILRRLADFREKMERLIRKIITAMIYPSVV 188
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
V + L L++ ++ P I D +
Sbjct: 189 VVVAAAILIGLMIFVV-PNFAKIFDELG 215
>gi|311694494|gb|ADP97367.1| general secretion pathway protein F [marine bacterium HP15]
Length = 403
Score = 40.6 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 24/197 (12%), Positives = 57/197 (28%), Gaps = 16/197 (8%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI------- 179
L + + + L +Y L + V + F KR +
Sbjct: 205 LPTLTMAMLAVSEFLADYGVYLFILLVAALMVFRFFLTKPGFRLRFHKRLLHLPLFSGMV 264
Query: 180 -KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
L I SG+ + +A+R E + + L +E+ ++S + +
Sbjct: 265 RGVNTARYASTLSILTTSGVPLVEAMRIAGEVL--SNDFLRQELRDAARKVSEGGSLHRS 322
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ +I S + L + + P +
Sbjct: 323 LDQTGY------FPPMMLHMIASGEASGELDSMLERTARMQENTLQSKIAAIVGLFEPMM 376
Query: 299 TVPMIIFFLPVLILVII 315
+ M + L +++ +++
Sbjct: 377 LLVMGVVVLIIVLAIML 393
>gi|154499176|ref|ZP_02037554.1| hypothetical protein BACCAP_03171 [Bacteroides capillosus ATCC
29799]
gi|150272016|gb|EDM99242.1| hypothetical protein BACCAP_03171 [Bacteroides capillosus ATCC
29799]
Length = 660
Score = 40.6 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 62/186 (33%), Gaps = 14/186 (7%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAE 209
V IG G+ AP + + + ++ + +L I + + +AL +A
Sbjct: 478 VLIAYGIGVFGWFAPGIMLDLRKKMVRAEEEEDVLQLQTMLAILRYTSLDTMEALYWLAR 537
Query: 210 DIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG 269
+ + A + + ++A +++ + + + L+ + T I
Sbjct: 538 QSR------IYQTAIYFAYHEYPSDPELALNRLRDKSSLPEFQQICERLLSTISQVT-IR 590
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPK-------LTVPMIIFFLPVLILVIIGPAILSI 322
++ L SE + + ++ K P++ +++ I +
Sbjct: 591 EAFSDLESERDQMLSIREMVQNNTIERKRRQCSPISRAPLMAMVFGHVLMPIGVLGYNEV 650
Query: 323 IDTMKD 328
+ M
Sbjct: 651 TNMMGQ 656
>gi|289548811|ref|YP_003473799.1| type II secretion system F domain protein [Thermocrinis albus DSM
14484]
gi|289182428|gb|ADC89672.1| Type II secretion system F domain protein [Thermocrinis albus DSM
14484]
Length = 407
Score = 40.6 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 8/153 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ R L V++G+ + +AL +AE + LSE +S +
Sbjct: 61 RRRVSDRDISIFCRQLGTMVQAGVPLVEALNVIAEQMPD--RRLSEASQEVARMISEGMS 118
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A F + L+ I +L ++ + K+AS
Sbjct: 119 VSAAMRKFPHVFP-----ELVVNLMLVGEETGKIDVALLKASEYYEKMATIKGKIKSASF 173
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
P V + + + IL + P I ++
Sbjct: 174 YPTFVVIVAVTIV-SGILYFLVPTFAQIYSSLG 205
>gi|254522252|ref|ZP_05134307.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
gi|219719843|gb|EED38368.1| general secretion pathway protein F [Stenotrophomonas sp. SKA14]
Length = 338
Score = 40.6 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 49/144 (34%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + + + + A E
Sbjct: 69 LLQFTQQLATLLGAGQPLDRALSILLGLPEDERS--RRAITDIRDVVRGGAPLSTALER- 125
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q ++++ G S+ ++L+ L R ++ + A + P + + +
Sbjct: 126 ----QHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVINALVYPAILLVV 181
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L + +L + P + +++
Sbjct: 182 VGGAL-LFLLGYVVPQFAQMYESL 204
>gi|225874660|ref|YP_002756119.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium
capsulatum ATCC 51196]
gi|225793983|gb|ACO34073.1| putative type 4 fimbrial assembly protein PilC [Acidobacterium
capsulatum ATCC 51196]
Length = 398
Score = 40.6 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 17/169 (10%), Positives = 56/169 (33%), Gaps = 9/169 (5%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
G+ SV L + + + +++G+ I ++ +A+ +
Sbjct: 35 AGYYVYSVKPRGLTGTARKIKLEPFLIFNQQFVTLIKAGLPILSSVEMLAQSQK--NPHF 92
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ ++ A + + AF+ + + ++ + L ++
Sbjct: 93 AAQLQNVAARVRTGESISSAFDAQG------GFPPIYTTTLLAGERSGNLEEVLTRYLAF 146
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R + +A+ + P + + ++ + ++ + P + D M
Sbjct: 147 QRISLTFRKKLQASLIYPSMLIVLVFGLF-IFLISFVVPRFAMLYDQMG 194
>gi|222478632|ref|YP_002564869.1| hypothetical protein Hlac_0194 [Halorubrum lacusprofundi ATCC
49239]
gi|222451534|gb|ACM55799.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
49239]
Length = 608
Score = 40.6 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 7/191 (3%)
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
+ L G I + + G + G F A + L R +++R+
Sbjct: 297 AVAGLGTGAIAAVVTARFVSGWAAPVAGVGVGAGVALFVAVHRRRAVLSNVR--AVERSL 354
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF---E 240
PDA+ ++ V G++++ A+ E + G + L E L + + AF
Sbjct: 355 PDAMTVIGGDVAEGVAVETAIANAGERLDGATGELFERAGRRSDTLR--VDVREAFLGRG 412
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
V+ A L + R G GD L L + R +E + + T+
Sbjct: 413 GPAVPVPSPRVQGAVALLAVAGREGRPAGDVLLELADQLEELRELENDARRQLATVTGTL 472
Query: 301 PMIIFFLPVLI 311
L+
Sbjct: 473 TNTAAVFAPLV 483
>gi|317131788|ref|YP_004091102.1| Type II secretion system F domain [Ethanoligenens harbinense
YUAN-3]
gi|315469767|gb|ADU26371.1| Type II secretion system F domain [Ethanoligenens harbinense
YUAN-3]
Length = 403
Score = 40.6 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 88/303 (29%), Gaps = 44/303 (14%)
Query: 46 KSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
++V + + + + + + ++ + V D + NK++ A
Sbjct: 106 EAVQRGESLSKAMALQDAFPELLLNMVAAGEASGTLDTVMNRMATQYEKDNKLQNKVKQA 165
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV--------------- 150
+ + +V + V ++ +L I ++ ++
Sbjct: 166 ------MVYPIFLVCMSVAVVIFLLTFIMPTFLKMFDQFGGKIPTTTKILLSISNAMTGY 219
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD--------------ALDLLLICVES 196
+ +IG + V + + R + L S
Sbjct: 220 WYLFIIGVIAVYFAWVLLMRNEKTRMGWDRMKLRFPIFGKILLTLESARFARTLASLFSS 279
Query: 197 GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQ 256
G+ I Q++ V I + +L ++ + + +
Sbjct: 280 GLPIIQSIEIVTRVIKNTY--VKAGLLQATEDVRRGVSISGSIRKL------EIFPVMLC 331
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
+++ ++ + L + E ++ + + P + V + + + +I+ II
Sbjct: 332 SMLNIGEESGNMDEILNKTAAFYDDEADTAIQQMVSLIEPIMIVVLAL-IVGFIIVSIIT 390
Query: 317 PAI 319
P
Sbjct: 391 PIY 393
>gi|55378880|ref|YP_136730.1| flagellar assembly protein J [Haloarcula marismortui ATCC 43049]
gi|55231605|gb|AAV47024.1| flagella accessory protein J [Haloarcula marismortui ATCC 43049]
Length = 582
Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 25/219 (11%), Positives = 62/219 (28%), Gaps = 5/219 (2%)
Query: 109 SEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI 168
++ + + + L+V I + I + L + + P +
Sbjct: 286 NKSMVAGVGLSMLLVFITLGGMLGISPVTLNDLFFMLDGVPLPLYAAAPITPMLIPGIAF 345
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
++R +P+ + L + S A+ R LS +
Sbjct: 346 RQE-EQRIKDRDSEFPNFIRALGATEGAKQSTTGAVLRTLR--KKDFGALSPNIDNLYKR 402
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
L+ A+ F + ++ ++ + G S ++ + +
Sbjct: 403 LNMRIEPTSAWRFFTADCRSYLIQTFSEMYLIGREMGGSPKQLGELISENMNQVLQLRQK 462
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+K L + IG +++I+ M
Sbjct: 463 RK--QAATTLVGLLYGMTAASTFAFFIGLQVVNILADMS 499
>gi|262195827|ref|YP_003267036.1| general secretion pathway protein F [Haliangium ochraceum DSM
14365]
gi|262079174|gb|ACY15143.1| general secretion pathway protein F [Haliangium ochraceum DSM
14365]
Length = 412
Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +GI + ++L + E I + + ++ + A +
Sbjct: 78 FTRQLATLLRAGIPLAESLGALFEQIE--NPKFQAIVGEVRTAVNEGSSLADALQKHPR- 134
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++++ ++ + L L S + ++ + A + P + + + I
Sbjct: 135 ----VFDELFVSMVRAGELAGNLDEVLERLAEFMESSAQLRSKVQGAMIYPVIMIVVGIA 190
Query: 306 FLPVLILVII 315
+ +L++ ++
Sbjct: 191 IMSILMVAVV 200
>gi|183985114|ref|YP_001853405.1| hypothetical protein MMAR_5145 [Mycobacterium marinum M]
gi|183178440|gb|ACC43550.1| conserved hypothetical alanine-rich membrane protein [Mycobacterium
marinum M]
Length = 200
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFE---NFYNRTQMDCVRNATQALIQSDRYGTSIGDS 271
L+ + L + VA+ + V + +S G ++ D+
Sbjct: 80 PPGLARVLSRAAELLMLGADPSVAWSAPPELPLSSVDGHVDALLRLARRSACSGAALSDA 139
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ L +++R + A A G + P+ + FLP + + I P + +
Sbjct: 140 VGELAAQSRHDATHAATAAAERAGVLIAGPLGLCFLPAFVCLGIVPVLAGL 190
>gi|15601951|ref|NP_245023.1| HofC [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720296|gb|AAK02170.1| HofC [Pasteurella multocida subsp. multocida str. Pm70]
Length = 380
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 23/202 (11%), Positives = 58/202 (28%), Gaps = 10/202 (4%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI------- 179
++ + L Y FQL + + ++ A ++
Sbjct: 174 LPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLMLNARQRVGLYRLKNCLLHFLPIFKKI 233
Query: 180 --KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
L + + SG+ + QAL+ + E+ +
Sbjct: 234 AQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTEMRLAEEVQLMLKGIA 293
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
F + Q ++ + + L+ + + + + + + L P
Sbjct: 294 QGYRFSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPC 353
Query: 298 LTVPMIIFFLPVLILVIIGPAI 319
L + +I + V++L + P
Sbjct: 354 LML-VIGSIIGVILLGMYLPMF 374
>gi|291286276|ref|YP_003503092.1| Type II secretion system F domain protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290883436|gb|ADD67136.1| Type II secretion system F domain protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 402
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 12/166 (7%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
PS + +++ + + + ++ L + V SG+ I AL +A+D L +
Sbjct: 45 LPSFYRFLRFRQKINP--QDIVELIENLHLTVRSGLPISSALSDLAKDADNNH--LQSVL 100
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ A + T L++ + ++L+ +
Sbjct: 101 ENISNRVHAGMTLSKALSR-----HSGIFSDITVNLVRIGEETGKLDNTLKDAAEHMKKM 155
Query: 283 RLMEAEKK-AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + K A V MI+ + L+ V+ P ++S + +
Sbjct: 156 NDLTTKTKSALIYPSFALVGMILTMVFWLVAVM--PKMISAFKSFQ 199
>gi|330465092|ref|YP_004402835.1| type ii secretion system f domain-containing protein
[Verrucosispora maris AB-18-032]
gi|328808063|gb|AEB42235.1| type ii secretion system f domain protein [Verrucosispora maris
AB-18-032]
Length = 301
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 4/187 (2%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
++ L + +L+ P ++ ++R + A + L
Sbjct: 64 ALLIGAVVAGALAFLLTGLPVVGLLVAVAVPGTPWLFSVGRAEQRAIARIEAVGEWTRRL 123
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+G + QA+ +G + +E+ L A L + A F +
Sbjct: 124 KDVSATGQGLQQAIIGT---VGTAPEEIQDEVRLLAARLQAGWLARSALLAFADEIGDPV 180
Query: 251 VRNATQALIQSD-RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
ALI G +GD L + S +E E +A P+ V +
Sbjct: 181 CDQVVAALILHLTDRGERLGDVLGSIASAAAAEVTTRREIEAKRTQPRFAVRFLTGMTLA 240
Query: 310 LILVIIG 316
I +
Sbjct: 241 TIAYGLF 247
>gi|282897952|ref|ZP_06305947.1| type II secretion system protein [Raphidiopsis brookii D9]
gi|281197096|gb|EFA71997.1| type II secretion system protein [Raphidiopsis brookii D9]
Length = 419
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 12/144 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
V SG++I ++L ++ + L + + ++ N + + +
Sbjct: 84 FSRQFATLVNSGVTIIKSLDIISPQCP--NPKLKKALNQISTDIKTGINLSDSMKKHPDC 141
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++Q+ G + D L L ++ + K+A L+ P+ +
Sbjct: 142 -----FDALYITMVQAGEVGGVLDDVLHRLAKLLEDLAKLQNQIKSA-----LSYPIFVG 191
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+ I + + I+ I + +
Sbjct: 192 CFAIAIALGMTIFIIPIFANVFKN 215
>gi|110667294|ref|YP_657105.1| type II secretion system, transmembrane protein TadC [Haloquadratum
walsbyi DSM 16790]
gi|109625041|emb|CAJ51457.1| type II secretion system, transmembrane protein TadC [Haloquadratum
walsbyi DSM 16790]
Length = 645
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 11/197 (5%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ I L + + L+GYV + P ++ + + D +
Sbjct: 372 AMIVFTLIGVVGAGLSVGLDVDLLVASLVGYVSYSIPVGVVAVRRARSDDAKDHELKDFV 431
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQS-----VPLSEEMLLTIAELSFLPNRQVA-FEN 241
+ + G A+ VA D+ L+ + LT A + + A +
Sbjct: 432 HAISGHINLGRPFVDAVTHVASDVDLGPLSNDVTDLASNLQLTTAHGGVETDLRTAALDR 491
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
F R +I + G+ G L +E + EK++ G + V
Sbjct: 492 FVTRVGTPLAEQTVGLVIGAMDAGSDTGVVFETLQAEV---GRLYHEKRSLRSG--MLVY 546
Query: 302 MIIFFLPVLILVIIGPA 318
+ + + L+++ I A
Sbjct: 547 VAVGWTTALLVIGITVA 563
>gi|297193034|ref|ZP_06910432.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197719836|gb|EDY63744.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 278
Score = 40.2 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 8/221 (3%)
Query: 89 LKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
L +L AG + L+ I F G + L
Sbjct: 15 LTVGQERALRRARLMLAGPGAAVLPPWWSWRGLLPVITFRKEWWCLPAGVAVAVAGESPL 74
Query: 149 RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVA 208
+ A + + + R++ A + +G+ QAL
Sbjct: 75 PLAAGAVAVPLVRRWLRARERRRDEDRRARGVIGLCGAT---AGELRAGLQPAQALLFAV 131
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
G + L + +A F + A + + + + + G +
Sbjct: 132 ----GATDVLGDAEARVLAAARFGGDVPEALRSAARQPGAEGLAGVAACWRVAVDGGAGL 187
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
L L + R+E E A G T+ + + LPV
Sbjct: 188 AAGLDRLEASLRAEMDQREELAAQLAGAWSTIVL-LALLPV 227
>gi|257386199|ref|YP_003175972.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
gi|257168506|gb|ACV46265.1| type II secretion system protein [Halomicrobium mukohataei DSM
12286]
Length = 630
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 15/174 (8%)
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
V L+ YV + P ++ K + R D + + V G +A+ RVAE++
Sbjct: 381 VALLAYVAYGLPVGAVAVRRAKVDDAKDREIQDFVHAVSGHVSLGRPFSEAVERVAEEVD 440
Query: 213 GQSVPLSEEMLLTIAELSFLPNRQV--------AFENFYNRTQMDCVRNATQALIQSDRY 264
L ++ L + A + F R ++ +
Sbjct: 441 L--GALQSDVDQLAFTLGLTASPDDDATDGRAAALDRFVERVGTPMAEQTIGLVVGALDA 498
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLG--PKLTVPMIIFFLPVLILVIIG 316
G+ D L +E + E+KA + V L V I+V +
Sbjct: 499 GSDAEDVFETLQTEI---GKLYHERKALRSSLLVYVAVGWTTALLVVGIVVAVN 549
>gi|254432709|ref|ZP_05046412.1| pili biogenesis protein [Cyanobium sp. PCC 7001]
gi|197627162|gb|EDY39721.1| pili biogenesis protein [Cyanobium sp. PCC 7001]
Length = 418
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L V +G+ I +++ +A + EL+ + + +
Sbjct: 83 FASKLAALVNAGVPIVRSIDLMASQQK--MPLFKRALESVSLELNQGVSFGDSMRRWPK- 139
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T A++++ G + +SLR L + ++ + K A P I
Sbjct: 140 ----VFDRLTIAMVEAGEAGGVLDESLRRLAKLLEANAKLQNQIKGAMAYPLAVF-TIAI 194
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ + + + I P I + +
Sbjct: 195 LVFLGMTIFIIPTFAKIFEDLG 216
>gi|83338451|gb|ABC11891.1| PilC [Aliivibrio fischeri]
Length = 412
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 50/155 (32%), Gaps = 8/155 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + ++ L + SG+ + Q+L+ +AE+ + + +
Sbjct: 64 KMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAEN--NTKAEMKSILHQVCLSIEAG 121
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + + LI + S+ + L + ++ A
Sbjct: 122 TQLSKALS-----SSCSHFDSFYIDLIATGEDTGSLAQAFARLAEYREKSDALRSKVIKA 176
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ P + ++ + +L+L + P +I
Sbjct: 177 MIYPSMVF-LVAITVTILMLTFVIPEFENIFKGFG 210
>gi|183985115|ref|YP_001853406.1| hypothetical protein MMAR_5146 [Mycobacterium marinum M]
gi|183178441|gb|ACC43551.1| conserved hypothetical membrane protein [Mycobacterium marinum M]
Length = 267
Score = 40.2 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 5/184 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ L + + V+ V A LV+ R RA AL++L+
Sbjct: 43 WLGCLLACALAGAVLVMPLTTVLAAVVVAGTASRRRRRRLVRARGVREGRALEAALEILV 102
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC- 250
+ G +A A P++ M A + R+ +
Sbjct: 103 GELRVGAHPVRAFGVAA---DETDGPVAAAMRGVAAHARLGADVTGGLRAAARRSALPSH 159
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ +G +I +R + + A+ A G + + I+ LPVL
Sbjct: 160 WERLAVYWQLASDHGLAIATLMRAAQRDVAQRQRFSAKVSAGLAGARASAG-ILAGLPVL 218
Query: 311 ILVI 314
+V+
Sbjct: 219 GVVL 222
>gi|258510316|ref|YP_003183750.1| Type II secretion system F domain-containing protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257477042|gb|ACV57361.1| Type II secretion system F domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 412
Score = 40.2 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ V +G+ + AL+ + E + PL + + A++ + +
Sbjct: 70 FVPFCRQFATLVRAGVPLVPALQVLEEQLR--KGPLKKAVAEVAAKVEGGTALWESLAEY 127
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++++ S+ + L +R ++ K+A + P L M
Sbjct: 128 PKVFPP-----MFVQMVRAGEASGSLEEVLESTARFEEGQRETISKIKSALMYPALVSVM 182
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L++ +I P+ +S+ +M
Sbjct: 183 SVLVAGFLMINVI-PSFVSVFASM 205
>gi|308178277|ref|YP_003917683.1| hypothetical protein AARI_24950 [Arthrobacter arilaitensis Re117]
gi|307745740|emb|CBT76712.1| hypothetical membrane protein [Arthrobacter arilaitensis Re117]
Length = 224
Score = 40.2 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 9/186 (4%)
Query: 145 PFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL--DLLLICVESGISIDQ 202
F L + A ++ KR+ DA L + SG+S
Sbjct: 8 AFALWLWIPPHAAAANPGALRRIWTHGATKRKDGHSVLNADARVIRELSALLRSGLSFYP 67
Query: 203 ALRRVAEDIGGQSVPL-SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ + + + + + L L+ R A + Q V+ L S
Sbjct: 68 AIDALLDAEEEHGKIVGALKELQATHRLNNSAPRGDALDG----NQSPAVQRLHWCLELS 123
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI--IFFLPVLILVIIGPAI 319
R G S+ D L L + + + + AA GPK T+ ++ + + +++G +
Sbjct: 124 ARSGASLADVLERLAEDLENALVAQQAFDAAMAGPKATIKLLTWLPLVGFGFGMLLGIDV 183
Query: 320 LSIIDT 325
L I +
Sbjct: 184 LGTIAS 189
>gi|197335879|ref|YP_002156984.1| type IV pilus assembly protein TapC [Vibrio fischeri MJ11]
gi|197317369|gb|ACH66816.1| type IV pilus assembly protein TapC [Vibrio fischeri MJ11]
Length = 412
Score = 40.2 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 50/155 (32%), Gaps = 8/155 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + ++ L + SG+ + Q+L+ +AE+ + + +
Sbjct: 64 KMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAEN--NTKAEMKSILHQVCLSIEAG 121
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + + LI + S+ + L + ++ A
Sbjct: 122 TQLSKALS-----SSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREKSDALRSKVIKA 176
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ P + ++ + +L+L + P +I
Sbjct: 177 MIYPSMVF-LVAITVTILMLTFVIPEFENIFKGFG 210
>gi|114564899|ref|YP_752413.1| type II secretion system protein [Shewanella frigidimarina NCIMB
400]
gi|114336192|gb|ABI73574.1| type II secretion system protein [Shewanella frigidimarina NCIMB
400]
Length = 404
Score = 40.2 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 12/138 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ SGI I +A+ ++E S + + + +L+ A
Sbjct: 65 LQIFSRQMYSLTRSGIPILRAIAGLSET--THSDRMKKALDDISEQLTSGRPLSSAMNQ- 121
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + ++I + D+ L E+ KAA + PM
Sbjct: 122 ----HPDIFDSLFVSMIHVGENTGKLEDAFIQLSGYIEREQETRRRIKAA-----MRYPM 172
Query: 303 IIFFLPVLILVIIGPAIL 320
+ + +VI+ ++
Sbjct: 173 FVLIAITIAMVILNIMVI 190
>gi|239981064|ref|ZP_04703588.1| hypothetical protein SalbJ_16627 [Streptomyces albus J1074]
Length = 147
Score = 40.2 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + + A++ + + A+ + + + L ++ G + L +
Sbjct: 35 GAVGQGLARAAADVRLGGDPEAAWRHVAE---VPGASALARCLQRAAASGAPAAEPLARI 91
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+E R++ A ++A +T P+ + FLP + + + P ++ + +
Sbjct: 92 AAEARADGNRAATERARRAAVAVTAPVGLCFLPAFLTLGVAPVVIGLASGL 142
>gi|254445165|ref|ZP_05058641.1| Bacterial type II secretion system protein F domain
[Verrucomicrobiae bacterium DG1235]
gi|198259473|gb|EDY83781.1| Bacterial type II secretion system protein F domain
[Verrucomicrobiae bacterium DG1235]
Length = 390
Score = 40.2 bits (92), Expect = 0.46, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 8/145 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L +E+G+ + AL + + + + A++S N A F
Sbjct: 52 LAVFTQQLASMLEAGLPLVSALDALQD--QTEDPVFRIIIREVKADVSQGNNFSAACAKF 109
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N +++++ + + L + + + + K+A P + +
Sbjct: 110 PR-----AFNNLFISMVEAGEASGGLAEILGKVAGYFEATTKLTKKVKSAMTYPVAVIAL 164
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
I + VL++ ++ P +
Sbjct: 165 AIMLVNVLLIFVV-PTFADMFTDFG 188
>gi|256372059|ref|YP_003109883.1| hypothetical protein Afer_1279 [Acidimicrobium ferrooxidans DSM
10331]
gi|256008643|gb|ACU54210.1| hypothetical protein Afer_1279 [Acidimicrobium ferrooxidans DSM
10331]
Length = 267
Score = 40.2 bits (92), Expect = 0.46, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 5/176 (2%)
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRR 206
V ++ V + ++ + ++ W L + V +G S+ AL
Sbjct: 91 APAVSGALMAPVVVVALRVAMVMATARRVRERLRATWSSELGEIRHLVAAGASLPGALT- 149
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
P S + +AE+ + +VA + R + V A + L S G
Sbjct: 150 ---TRRDADTPWSTQWHGALAEMGEGTDLEVALAHVAERLRDANVGAALRLLGSSWAVGA 206
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ +L L + + R +A + A+ + +P+ + L + +++ P +
Sbjct: 207 -VTPALGELERDALARRRADALRLASRREQLVWIPVAVSALVPGVTLVVVPLAAGL 261
>gi|240103600|ref|YP_002959909.1| flagellar assembly protein J [Thermococcus gammatolerans EJ3]
gi|239911154|gb|ACS34045.1| Flagella-related protein J, type II secretion system protein F
(flaJ) [Thermococcus gammatolerans EJ3]
Length = 576
Score = 40.2 bits (92), Expect = 0.47, Method: Composition-based stats.
Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 10/219 (4%)
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
A + + +L+ +V+ + I+ I + L V+L+ Y
Sbjct: 12 KADLDMKTYIRKILLPNVVISAVLFIVASIISRLFMLSSALTTMLYAIPVVLLVYAA--- 68
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
++ ++ SI P + + S + ++ +A + ++ E+
Sbjct: 69 --IYPYIQADSKKISINSRIPYFITYFAVLSTSEMGRSDLIKVLAS--DPKLGAIASELK 124
Query: 224 LTIAEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ + AF RT + L S G + + L +
Sbjct: 125 KVYIIVDKLHRSMPEAFRFLARRTPSKVFADFLDRLAYSLDSGVDMKEYLFQEQKTVMDD 184
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLIL--VIIGPAI 319
E L + I V + +IIGP I
Sbjct: 185 YETFYEGALYDLDVFKEIYESIIISVVFMASFIIIGPLI 223
>gi|83338372|gb|ABC11879.1| PilC [Aliivibrio fischeri]
Length = 412
Score = 40.2 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 50/155 (32%), Gaps = 8/155 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + ++ L + SG+ + Q+L+ +AE+ + + +
Sbjct: 64 KMKHAVKRKDITLFTRQLSTMLASGVPVVQSLQLIAEN--NTKAEMKSILHQVCLSIEAG 121
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A + + LI + S+ + L + ++ A
Sbjct: 122 TQLSKALS-----SSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREKSDALRSKVIKA 176
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ P + ++ + +L+L + P +I
Sbjct: 177 MIYPTMVF-LVAITVTILMLTFVIPEFENIFKGFG 210
>gi|59712794|ref|YP_205570.1| pilus assembly protein PilC [Vibrio fischeri ES114]
gi|59480895|gb|AAW86682.1| pilus assembly protein PilC [Vibrio fischeri ES114]
gi|83338469|gb|ABC11894.1| PilC [Vibrio fischeri ES114]
Length = 412
Score = 40.2 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 8/155 (5%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + ++ L + SG+ + Q+L +AE+ + + +
Sbjct: 64 KMKHAVKRKDITLFTRQLSTMLASGVPVVQSLHLIAEN--NTKAEMKSILHQVCLSIEAG 121
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A T + LI + S+ + L + ++ A
Sbjct: 122 TQLSKALS-----TSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREKSDALRSKVIKA 176
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ P + ++ + +L+L + P +I
Sbjct: 177 MIYPTMVF-LVAITVTILMLTFVIPEFENIFKGFG 210
>gi|255657468|ref|ZP_05402877.1| type IV pilus assembly protein [Clostridium difficile QCD-23m63]
gi|296449063|ref|ZP_06890853.1| type IV pilus assembly protein [Clostridium difficile NAP08]
gi|296879886|ref|ZP_06903859.1| type IV pilus assembly protein [Clostridium difficile NAP07]
gi|296262156|gb|EFH08961.1| type IV pilus assembly protein [Clostridium difficile NAP08]
gi|296429175|gb|EFH15049.1| type IV pilus assembly protein [Clostridium difficile NAP07]
Length = 402
Score = 40.2 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 57/154 (37%), Gaps = 8/154 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++++ I V SGI+ L +A ++ L EE+ +AE+
Sbjct: 55 RKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLAR--RSTNITLREEINRIVAEIKV 112
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + ++ A++ + + + L+ + S SE ++ + +
Sbjct: 113 GSTIADSMLSSKSKFP-----KLLGAMVATGEATGKLDEVLKSMASFYASEHRVKQKLR- 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ L V + F + + + P +++ I T
Sbjct: 167 NAATYPLIVLISSFIMIFIFTAFMVPKMINSITT 200
>gi|149174858|ref|ZP_01853482.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
gi|148846195|gb|EDL60534.1| MSHA biogenesis protein MshG [Planctomyces maris DSM 8797]
Length = 368
Score = 40.2 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
D D L+ + +GI +DQ LR A + S E++ L ++ + + A +
Sbjct: 17 LVDLNDELIAMIRAGIPLDQGLRNAAAHLNRDSKQFIEQLAL---KIEEGSSLEEAIQLG 73
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ + A+ + ++L S RS + E A L P + + M
Sbjct: 74 ADKLPPSYISLLKSAIRM-----GKLPEALSAYTSFARSRMELRQEIGMALLYPGIVLVM 128
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
FFL + II P +L I
Sbjct: 129 -AFFLSLFACFIIFPKLLVIHQMF 151
>gi|323495863|ref|ZP_08100931.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM
21326]
gi|323319079|gb|EGA72022.1| type IV pilin biogenesis protein PilC [Vibrio sinaloensis DSM
21326]
Length = 408
Score = 40.2 bits (92), Expect = 0.50, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 8/163 (4%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
IS + + ++ L + +G+ + QAL+ VA++ + +
Sbjct: 52 RRNISFIKRATHRVKRKDITILTRQLATMLVTGVPLIQALKLVADNHR--KAEMKSILAQ 109
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + + RT + L+ S ++ + + +
Sbjct: 110 IVKGVESGTPLSKSM-----RTASQHFDSLYIDLVTSGEQSGNLPEVFERIATYREKSEQ 164
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ A+ A + P + + + L+L ++ P S+
Sbjct: 165 LRAKVIKALIYPSMVMLTALSV-TYLMLTVVIPEFESMFKGFG 206
>gi|302205374|gb|ADL09716.1| Putative membrane protein [Corynebacterium pseudotuberculosis C231]
Length = 72
Score = 39.8 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 257 ALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
S+R G ++ ++ L + R+ + +A G + +P+ + FLP L+ +
Sbjct: 1 MARASERSGATLAEACERLARQLRARASDLSLARAERAGVLIALPLTVCFLPAFFLLGLA 60
Query: 317 PAILSI 322
P ++S+
Sbjct: 61 PVVISL 66
>gi|149198877|ref|ZP_01875919.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa
HTCC2155]
gi|149138075|gb|EDM26486.1| type IV pilus biogenesis protein PilC [Lentisphaera araneosa
HTCC2155]
Length = 414
Score = 39.8 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 45/139 (32%), Gaps = 6/139 (4%)
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
+ L + +G+ + +A+R +A+ + V L + + +
Sbjct: 69 KMTSKNLTVFTRQLATLLGAGLPMVRAIRTLAKQAK-KDVILRQILTQIADSIEGGNGFS 127
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
A +Q +I++ ++ L L ++ + K A + P
Sbjct: 128 DALA-----SQPKSFNKLYVNMIRAGEASGAMEAVLNRLAEFMEKSEKLKRKVKGALMYP 182
Query: 297 KLTVPMIIFFLPVLILVII 315
+ + + L+ I+
Sbjct: 183 CSVLFIAVCITWGLMTFIV 201
>gi|325109102|ref|YP_004270170.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324969370|gb|ADY60148.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 416
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 48/133 (36%), Gaps = 7/133 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L ++G+ I ++LR + + + PL ++ I ++ A
Sbjct: 79 LCTFTRQLSTLQDAGLPILRSLRIL--ESQSKPGPLKNSLIGVIEDVESGNTLSEAMTR- 135
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q N ++++ G ++ L+ L + ++ + + A + P + +
Sbjct: 136 ----QPKAFDNLYCNMVKAGEAGGALEVILQRLAEFKEKSQSLKRKVQGAMIYPVSVLTV 191
Query: 303 IIFFLPVLILVII 315
+ ++ II
Sbjct: 192 AGGIVGFIMYFII 204
>gi|325288257|ref|YP_004264438.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
8271]
gi|324963658|gb|ADY54437.1| hypothetical protein Sgly_0063 [Syntrophobotulus glycolicus DSM
8271]
Length = 309
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 64/225 (28%), Gaps = 5/225 (2%)
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ V E K + + R E + ++ F +L + + +
Sbjct: 32 FGKLTDRPKSLRDEVGEFTRRK-KQSYLRREIAEVQSILKVTGRTARFPMLCALSLLCFA 90
Query: 140 KLLEYPFQLR-VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L V ++ P W+ + I AL ++
Sbjct: 91 VGASIAIMLSNFFLVPVMAVGCMFLPFWWVKLTASHFKRDIAAELETALSIITTAYLRNE 150
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
I A+ + LS P+ A + +R AL
Sbjct: 151 DILTAVDENLPYL--NPPVLSVFKGFVSRVRLVDPDVTAALHDLKDRIDNAVYVEWCDAL 208
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ ++ S+ +L +VS+ R++ E + P+ ++
Sbjct: 209 -IACQHDRSLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIM 252
>gi|296130609|ref|YP_003637859.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296022424|gb|ADG75660.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 235
Score = 39.8 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+L V G + AL +GG + L+ A+
Sbjct: 98 VLELCAAAVRGGAPVPTALAVTGRHLGGADGD---ALARAGTALALGAPWDAAWAGAP-- 152
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
V +AL G S +LR + R E A +LG +LT+P+
Sbjct: 153 ---PSVAALARALRGGWDAGASPRPALRAAAAGLRREHRAHVRAAAGALGVRLTLPLGAC 209
Query: 306 FLPVL 310
FLP
Sbjct: 210 FLPAF 214
>gi|256829538|ref|YP_003158266.1| type II secretion system protein [Desulfomicrobium baculatum DSM
4028]
gi|256578714|gb|ACU89850.1| type II secretion system protein [Desulfomicrobium baculatum DSM
4028]
Length = 401
Score = 39.8 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ +G+ I QAL+ + E ++ L ++ ++ + A +
Sbjct: 64 MVVFSRQFATMINAGVPILQALQIMCE--QTENPKLRRKLYAVRNDIEGGSSLYEALKK- 120
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
D ++ + G + L L
Sbjct: 121 ----HPDIFDALYSNMVNAGETGGILDQVLIRLAEYIE 154
>gi|126701135|ref|YP_001090032.1| type IV pilus assembly protein [Clostridium difficile 630]
gi|254977136|ref|ZP_05273608.1| type IV pilus assembly protein [Clostridium difficile QCD-66c26]
gi|255094465|ref|ZP_05323943.1| type IV pilus assembly protein [Clostridium difficile CIP 107932]
gi|255102721|ref|ZP_05331698.1| type IV pilus assembly protein [Clostridium difficile QCD-63q42]
gi|255308542|ref|ZP_05352713.1| type IV pilus assembly protein [Clostridium difficile ATCC 43255]
gi|255316216|ref|ZP_05357799.1| type IV pilus assembly protein [Clostridium difficile QCD-76w55]
gi|255518878|ref|ZP_05386554.1| type IV pilus assembly protein [Clostridium difficile QCD-97b34]
gi|255652057|ref|ZP_05398959.1| type IV pilus assembly protein [Clostridium difficile QCD-37x79]
gi|260685031|ref|YP_003216316.1| type IV pilus assembly protein [Clostridium difficile CD196]
gi|260688689|ref|YP_003219823.1| type IV pilus assembly protein [Clostridium difficile R20291]
gi|306521793|ref|ZP_07408140.1| type IV pilus assembly protein [Clostridium difficile QCD-32g58]
gi|115252572|emb|CAJ70415.1| putative type IV pilus secretion protein [Clostridium difficile]
gi|260211194|emb|CBA66676.1| type IV pilus assembly protein [Clostridium difficile CD196]
gi|260214706|emb|CBE07364.1| type IV pilus assembly protein [Clostridium difficile R20291]
Length = 402
Score = 39.8 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 57/154 (37%), Gaps = 8/154 (5%)
Query: 172 VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF 231
++++ I V SGI+ L +A ++ L EE+ +AE+
Sbjct: 55 RKRKKDLGADQISHFCRQFAIIVSSGINSISGLETLAR--RSTNITLREEINRIVAEIKV 112
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
+ + ++ A++ + + + L+ + S SE ++ + +
Sbjct: 113 GSTIADSMLSSKSKFP-----KLLGAMVATGEATGKLDEVLKSMASFYASEHRVKQKLR- 166
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ L V + F + + + P +++ I T
Sbjct: 167 NAATYPLIVLISSFIMIFIFTTFMVPKMINSITT 200
>gi|299537659|ref|ZP_07050950.1| hypothetical protein BFZC1_16644 [Lysinibacillus fusiformis ZC1]
gi|298726911|gb|EFI67495.1| hypothetical protein BFZC1_16644 [Lysinibacillus fusiformis ZC1]
Length = 246
Score = 39.8 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 22/186 (11%), Positives = 63/186 (33%), Gaps = 11/186 (5%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
I F +L L + V IG + F + ++K Q +
Sbjct: 17 IAFYLLIWFLANYQFFYLISKERTISIIVGCIGALFFFFVFTVQNRQLKKYQMHLSELLK 76
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+++ +++G ++ A + E + + + ++I +L +
Sbjct: 77 YVTNMI-FFLQTGENVLHAFK---ETKATVHPDIQKAIEISIQQLEKEAQLN---TKQFE 129
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRSERLMEAEKKAASLGPKLTV 300
+ + Q L +G + GD + ++ E + + +++ ++ + +
Sbjct: 130 KYDFPTLDQFHQNLKIQYEHGGNPGDLFSQIHKNMIFELKKRDELYRKRRGFAMAVYMLL 189
Query: 301 PMIIFF 306
M++
Sbjct: 190 GMVMGI 195
>gi|257464379|ref|ZP_05628756.1| FimO [Fusobacterium sp. D12]
gi|317061883|ref|ZP_07926368.1| predicted protein [Fusobacterium sp. D12]
gi|313687559|gb|EFS24394.1| predicted protein [Fusobacterium sp. D12]
Length = 391
Score = 39.8 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 22/215 (10%), Positives = 60/215 (27%), Gaps = 20/215 (9%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + +L+ + + + ++Y + + + + + S +
Sbjct: 176 LLYFVFPKLLSLFQDTGMQLPFFTRILLKIKYFLPVFLLIFSIFSILLYWIFSRKYDEKI 235
Query: 173 QKRQSSIKRAWPD------------ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSE 220
Q + + + L I ++SG S + + ++I +
Sbjct: 236 QCKIDKFIFHYVYQSGIYRKILSLQISNYLEILLKSGFSFQETFAILEKEIENL--EFKK 293
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+ A + +I + + TR
Sbjct: 294 RFSSMKKRIYKGEKVYHALREL-EIFSQKDLYFLAL-----GEESGNIDEIFHKIARYTR 347
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
E ++ +K + L P + + + V+I V +
Sbjct: 348 EEIHLKIQKYLSWLEPSIFIIFGLCIGAVIIAVYL 382
>gi|163781562|ref|ZP_02176562.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
gi|159882782|gb|EDP76286.1| fimbrial assembly protein PilC [Hydrogenivirga sp. 128-5-R1-1]
Length = 415
Score = 39.8 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L V +G+ I AL VAE + + L+E + E+S + A N
Sbjct: 80 FCRQLGAMVNAGVGIIDALDIVAEQMPNKK--LAEAVAEVAKEVSEGMSMSEAMSKRANI 137
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L+ + +L +++++ K+A+ P + V +I
Sbjct: 138 FP-----ELVVNLVAVGEETGELDRALLRASEYYEKLAMIKSKIKSAAFYP-VFVLVIAT 191
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ IL + P I
Sbjct: 192 VIVTGILYFLVPTFAQIYSGFG 213
>gi|94499731|ref|ZP_01306268.1| general secretion pathway protein F [Oceanobacter sp. RED65]
gi|94428485|gb|EAT13458.1| general secretion pathway protein F [Oceanobacter sp. RED65]
Length = 404
Score = 39.8 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ I++ALR A+ + + ++ +++ + A +F
Sbjct: 67 LALLTRQLSTLIGAGLPIEEALRATAD--QTEKRRIKTMIMDVRSKVLEGHSLANALNDF 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+A + + + + L L + + + K A P+
Sbjct: 125 SYAFP-----QLYRATVAAGEHAGHLDTVLNRLADYMERAQENQQKIKLA-----AVYPI 174
Query: 303 IIFFLPVLILV-IIGPAILSIIDTMKDH 329
I+ + + I+V ++ + I++ +
Sbjct: 175 ILCIVAIAIVVGLLTYVVPDIVEVFVKN 202
>gi|72160531|ref|YP_288188.1| integral membrane protein [Thermobifida fusca YX]
gi|71914263|gb|AAZ54165.1| putative integral membrane protein [Thermobifida fusca YX]
Length = 250
Score = 39.8 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 24/206 (11%), Positives = 53/206 (25%), Gaps = 3/206 (1%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
+V +L ++W+ L A +++
Sbjct: 12 VVWTAGWLGCAVVWVLPSAAELRLRALTTARAPRPSLRALAAVVRRRLTHRPGLLARRRL 71
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R D + + G S +AL A + G ++ E+ + A
Sbjct: 72 RGCADVCRAIAAELRCGSSPGKAL---AAALRGADPLIAAELAEAAVLAEAGHDPVPALR 128
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
R + + GT + + L + + E GP+ T
Sbjct: 129 AASRRPGGTAWASLAVCWQVAASSGTGVAAVVERLADALAHQDALHRELDIHLAGPRTTA 188
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTM 326
++ +L+ ++
Sbjct: 189 VLLAGLPIAGLLMASALGGAPLLFLF 214
>gi|150391218|ref|YP_001321267.1| type II secretion system protein [Alkaliphilus metalliredigens
QYMF]
gi|149951080|gb|ABR49608.1| type II secretion system protein [Alkaliphilus metalliredigens
QYMF]
Length = 405
Score = 39.8 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + SGI I AL A + +S+ + + + ++ + V F+
Sbjct: 274 FTRTLSTLLTSGIPIISALEASANV--TNNKVVSDGIEMVVDDIRKGVSLAVLFKKMNVF 331
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + G S+ D L E ++ + L P + V M +
Sbjct: 332 PP-----MMVSMVSIGEESG-SLDDMLSKTADFYDEELEAAIQQMVSMLEPLMIVVMAVI 385
Query: 306 FLPVLIL 312
++I
Sbjct: 386 IGFIVIA 392
>gi|194364325|ref|YP_002026935.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
gi|194347129|gb|ACF50252.1| type II secretion system protein [Stenotrophomonas maltophilia
R551-3]
Length = 406
Score = 39.8 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 49/144 (34%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + + + + A E
Sbjct: 69 LLQFTQQLATLLGAGQPLDRALSILLGLPEDERS--RRAITDIRDVVRGGAPLSTALER- 125
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q ++++ G S+ D+L+ L R ++ + A + P + + +
Sbjct: 126 ----QHGLFSRLYVNMVRAGEAGGSLHDTLQRLADYLERSRALQGKVINALVYPAILLVV 181
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L + +L + P + +++
Sbjct: 182 VGGAL-LFLLGYVVPQFAQMYESL 204
>gi|237733196|ref|ZP_04563677.1| predicted protein [Mollicutes bacterium D7]
gi|229383740|gb|EEO33831.1| predicted protein [Coprobacillus sp. D7]
Length = 413
Score = 39.8 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 50/296 (16%), Positives = 117/296 (39%), Gaps = 30/296 (10%)
Query: 38 SGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDEN 97
EL+K ++ ++ ++ SL + + L+
Sbjct: 138 HNELDKAIEQSNIQILEESSRKENSLGHKLTAKDKIISYTTETDLNSLIFILENETTSSY 197
Query: 98 IVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ +L + SL I L + +V +I + + L + L + A ++I
Sbjct: 198 VEKRL-------KKSLYIFLGLAGIVAVIG-----VANLLLNLHLAINYPLFIIASVIIS 245
Query: 158 YVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
Y + I ++ + +Q S+K A+P + L + + + +I LR + + P
Sbjct: 246 YGIYKIDYFMIKSVFKNQQKSVKDAFPLWMSTLEVLIVT-NNIPNTLR---KSLPSCPKP 301
Query: 218 LSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ---------SDRYGTSI 268
+ +++ IA L P + A+++F ++ + ++ L Q S + ++
Sbjct: 302 IVKDLERFIARLDVNPVDKEAYKDFLSQYNIPEIQEIVLDLYQFNFVDKNNISTEF-AAL 360
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILV-IIGPAILSII 323
L + S+TR R E +G ++P+++ L +L++ ++ AI+ +
Sbjct: 361 HKRLNRISSDTRKRRQ---ESDTFLIGALNSLPLMVVSLYILMISNLLSSAIMGNM 413
>gi|225848333|ref|YP_002728496.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644500|gb|ACN99550.1| pilin biogenesis protein [Sulfurihydrogenibium azorense Az-Fu1]
Length = 408
Score = 39.8 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 10/149 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L + +GI I QAL +A+ + + L E + ++ +
Sbjct: 69 ELDLAIFTRQLGAMINAGIGITQALEILAQQMP--NPTLQEAINKVRDDVVTGMSLSKTM 126
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
N L+ + + ++L+ ++ + K S T
Sbjct: 127 AKHPNVFPP-----FLVNLVDAAEESGKLDETLKRATVYYEKLAAIKGKIK--SASWYPT 179
Query: 300 VPMIIFFLPVL-ILVIIGPAILSIIDTMK 327
++I L VL +L + P I +M
Sbjct: 180 AVLVIATLIVLGLLTFVVPTFAEIYSSMG 208
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 32/251 (12%), Positives = 80/251 (31%), Gaps = 37/251 (14%)
Query: 94 VDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAV 153
I K+++A + + +++ +V+ ++ ++ E PF ++
Sbjct: 163 KLAAIKGKIKSASWY--PTAVLVIATLIVLGLLTFVVPTFAEIYSSMGGELPFLTQILIN 220
Query: 154 I-------LIGYVGFCAPSVWISNLVQKRQSSIKRA------------------WPDALD 188
I ++ +GF V I+ + K S +
Sbjct: 221 ISNNLKSNILFIIGFIIAVVVINKQIYKTYSGKRFYHKLFLKIPLIGKILHKGALAKFAR 280
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ G+SI +A+ + +G + E + T ++ + + Y
Sbjct: 281 TFATLINGGVSIIRAIEIASSTVGNVL--IEESLQKTKTDVEKGKPFSQSLDKNY----- 333
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
A+ + + L + S E E + ++L P + V +I +
Sbjct: 334 --FPLMFTAMAAVGENTGRLDEMLDTIASFYEDEVDREVDALISTLEPLMMV-VIGGIVG 390
Query: 309 VLILVIIGPAI 319
+++ + P
Sbjct: 391 FILIALYLPIF 401
>gi|147920827|ref|YP_685367.1| putative type II secretion system protein, N-terminal fragment
[uncultured methanogenic archaeon RC-I]
gi|110620763|emb|CAJ36041.1| putative bacterial type II secretion system protein, N-terminal
fragment [uncultured methanogenic archaeon RC-I]
Length = 280
Score = 39.8 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 22/196 (11%), Positives = 54/196 (27%), Gaps = 1/196 (0%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ LI G V L F +S+ R + I
Sbjct: 47 CLVLIAGAAVALATRADAAQALAYTVAGAALAAPAVFLGRLWSVSSFKDYRGALIDSTLV 106
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENFY 243
A+ L+L + I + ++ L+ E +A + + A
Sbjct: 107 YAVGLMLAMASFNVPIRRIFSNLSNLSDVYGKELALEATYVLALIEEDGMDVISAMRKAQ 166
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
+ + + G + + L +++ + + ++ +V +
Sbjct: 167 ATSPSMLWQELLIGITAVYSSGGLLKEYLEGRYRALAEKKMADVRRYNEAVQGMASVYLS 226
Query: 304 IFFLPVLILVIIGPAI 319
+ + + + II
Sbjct: 227 VIGIASIFIAIINLVF 242
>gi|145300645|ref|YP_001143486.1| general secretion pathway protein F [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853417|gb|ABO91738.1| general secretion pathway protein F [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 388
Score = 39.8 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++ALR VAE L + +++ +
Sbjct: 42 RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAH--LRSLVATVRSKVVEGYS 99
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M + A
Sbjct: 100 LADSLGAFPH-----VFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQA-- 152
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAIL 320
+ P+++ + V ++ I+ A++
Sbjct: 153 ---MIYPIVLTLVAVGVISILLTAVV 175
>gi|187736073|ref|YP_001878185.1| type II secretion system protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426125|gb|ACD05404.1| type II secretion system protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 422
Score = 39.8 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 19/141 (13%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L +++G+ + Q+L +A+ + L + + A
Sbjct: 79 LMIFTRQLATLIDAGLPLLQSLNVLAK--QEANPNLRVTIEALGDSVQGGSTFSEALAQH 136
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++++ G + L L ++KA L K+ M
Sbjct: 137 PR-----IFDRLFVNMVKAGELGGVLEVVLNRLAEY---------QEKAQKLKSKVISAM 182
Query: 303 IIFFLPVLILVIIGPAILSII 323
+ P ++L I ++ ++
Sbjct: 183 VY---PSIVLFIAVGIVIFLM 200
>gi|149191273|ref|ZP_01869528.1| type IV pilin biogenesis protein PilC [Vibrio shilonii AK1]
gi|148834871|gb|EDL51853.1| type IV pilin biogenesis protein PilC [Vibrio shilonii AK1]
Length = 408
Score = 39.8 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 50/166 (30%), Gaps = 10/166 (6%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
IS + ++ L + + + + QAL+ ++E + +
Sbjct: 52 RHRISFWTRLTHKISRKDITLFTRQLATLLTTRVPLVQALKLISES--HSKAEMKSVLNQ 109
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+ + A + +I + +I +L L + E+
Sbjct: 110 VASRVESGVPIAQALQAL-----STHFDRFYIDMIATGESSGNIAVTLDRLATY--REKH 162
Query: 285 MEAEKKAASLGPKLTVPMII-FFLPVLILVIIGPAILSIIDTMKDH 329
+ K ++ +I+ + L+L + P S+ +
Sbjct: 163 DALQSKVVKAMIYPSMVLIVSCAVTYLMLTSVIPEFESMFKGFNAN 208
>gi|292654784|ref|YP_003534681.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
gi|291372968|gb|ADE05195.1| type IV pilus biogenesis complex membrane subunit [Haloferax
volcanii DS2]
Length = 639
Score = 39.8 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 15/200 (7%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + V L GYV + AP + + + R D +
Sbjct: 365 AAAVFVFSGLVVAGVAAFVGADAVGVALAGYVAYAAPVGLVGVRRARLDDAKDRELKDFV 424
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN--------RQVAF 239
+ V G +A+ RV D+ PL ++ L F R A
Sbjct: 425 HAVSGHVNLGRPFGEAVERVGRDVDL--GPLDADVADLALNLRFTAPSSGTDVNLRTAAL 482
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
F +R ++ + G+ G L +E + EK+A G L
Sbjct: 483 ARFVDRVGTPMAEQTIGLVVGALDGGSDTGTVFDTLQTEI---GRLYHEKRALRSG--LL 537
Query: 300 VPMIIFFLPVLILVIIGPAI 319
V + + + L++V I A+
Sbjct: 538 VYVAVGWTTALLVVGITVAV 557
>gi|284050859|ref|ZP_06381069.1| type II secretion system protein [Arthrospira platensis str.
Paraca]
gi|291567073|dbj|BAI89345.1| pilin biogenesis protein [Arthrospira platensis NIES-39]
Length = 377
Score = 39.8 bits (91), Expect = 0.63, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 8/142 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+GIS+ + L + E ++ I L
Sbjct: 37 LAIFARQFAAMFNAGISMARCLSVLGEQCENA------KLKRAINTLRADVEEGEELS-L 89
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
R D +++ + G + ++L L ++E K+A+ PK TV
Sbjct: 90 SMRKFPDVFDQLFVSMVWAGETGGVLDETLERLAVMMEKNHKTQSEIKSATSYPK-TVLF 148
Query: 303 IIFFLPVLILVIIGPAILSIID 324
I + + + P I +
Sbjct: 149 IAIAVFFGMATFLLPTFSGIFE 170
>gi|328883372|emb|CCA56611.1| putative integral membrane protein [Streptomyces venezuelae ATCC
10712]
Length = 321
Score = 39.8 bits (91), Expect = 0.66, Method: Composition-based stats.
Identities = 21/187 (11%), Positives = 48/187 (25%), Gaps = 4/187 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
W+ ++ + ++ + + ++
Sbjct: 99 AWLCLPAAGALALLGASPLPLVAGALAVPLVERRLRAAERRRAREARAERVVSLCGAVVG 158
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ +G QAL A + + L E +A F + A ++ D +
Sbjct: 159 ELRAGWQPAQALSFAARE----TGALGAEEAAVLAAARFGGDVPEALRKAADQDGADGLA 214
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ G + L L + R R +A G TV ++ +
Sbjct: 215 GMAACWQVAVDGGAGLAAGLDRLEAALRDHREQRERLRAELAGAWATVAVLAVLPLAGVA 274
Query: 313 VIIGPAI 319
+
Sbjct: 275 LGAALGA 281
>gi|83338417|gb|ABC11885.1| PilC [Aliivibrio fischeri]
Length = 412
Score = 39.4 bits (90), Expect = 0.67, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 10/156 (6%)
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + + ++ L + SG+ + Q+L+ +AE+ + + +
Sbjct: 64 KMKHAVKRKDITLFTRQLSTMLASGVPVIQSLQLIAEN--NTKAEMKSILHQVCLSIEAG 121
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKA 291
A + + LI + S+ + L + ++ KA
Sbjct: 122 TQLSKALS-----SSCSHFDSFYIDLIATGEETGSLAQAFARLAEYREKSDALRSKVIKA 176
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V ++ + +L+L + P +I
Sbjct: 177 MXYPT--MVFLVAITVTILMLTFVIPEFENIFKGFG 210
>gi|312143781|ref|YP_003995227.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus']
gi|311904432|gb|ADQ14873.1| Type II secretion system F domain [Halanaerobium sp. 'sapolanicus']
Length = 403
Score = 39.4 bits (90), Expect = 0.67, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 10/143 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+++GIS+ AL +A+ L + ++ ++ + A
Sbjct: 70 FSQQFAAMIDAGISLVDALNILAD--QSDHKHLKKVLMQVRDDVETGVSLADAVSK---- 123
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
D LI++ G + L L + +R E S V + +
Sbjct: 124 -HPDSFPELYSQLIRAGESGGVLDTILNKLANHY--DRQHELNSMVKSALYYPAVILSVG 180
Query: 306 FLPVLILVI-IGPAILSIIDTMK 327
+ V+ LV + P + +
Sbjct: 181 LIVVIFLVTQVVPQFVGMFQDFG 203
>gi|301064212|ref|ZP_07204655.1| type IV fimbrial assembly protein PilC family protein [delta
proteobacterium NaphS2]
gi|300441657|gb|EFK05979.1| type IV fimbrial assembly protein PilC family protein [delta
proteobacterium NaphS2]
Length = 313
Score = 39.4 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A L I + +GI++ AL + + + + T ++ + A
Sbjct: 74 ATRQLAILLGAGITLVAALEAM--LMQVSNPAFKRVLAQTKESVNEGNSLAHALGRHPR- 130
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ L+++ S+ L L + E+ + KAA P L
Sbjct: 131 ----VFSDVYINLVRAGEASGSLELVLHRLADLSEQEQALRGRLKAAMAYPFLM 180
>gi|29831152|ref|NP_825786.1| hypothetical protein SAV_4609 [Streptomyces avermitilis MA-4680]
gi|29608266|dbj|BAC72321.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 101
Score = 39.4 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ A+ + L ++ G + L +E R+E A
Sbjct: 1 MRLGGEPADAWRRLA---SVPRAGALALLLERAGESGVPAAGPVGRLAAEARAEWGRTAT 57
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
+A G +T P+ + FLP I V + P ++
Sbjct: 58 ARARRAGVLITAPVGLCFLPAFITVGVLPVVI 89
>gi|149193938|ref|ZP_01871036.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
gi|149135891|gb|EDM24369.1| msha biogenesis protein mshg [Caminibacter mediatlanticus TB-2]
Length = 415
Score = 39.4 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 62/166 (37%), Gaps = 12/166 (7%)
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEE 221
++++ +V+K+ ++ AL L + +++GIS+ AL + E+ + E
Sbjct: 55 LLKDIFLTRIVRKKLKY--PSYISALRQLSVLIKAGISLKDALEDIGEN--SADPLIKEV 110
Query: 222 MLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRS 281
L + + F + + A+++ + ++ L +
Sbjct: 111 FLNAAEAIDSGKSLSDVFAEYEEYLG-----GLSLAMVRLGEKTGDLAMAIDYLAQIYEN 165
Query: 282 ERLMEAE-KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ KA + +++ F V +++++ P +I +
Sbjct: 166 MYENRRKMIKALRYPIITLIAIVVAF--VFLILLVVPKFKAIFEQF 209
>gi|307825437|ref|ZP_07655656.1| Type II secretion system F domain protein [Methylobacter
tundripaludum SV96]
gi|307733612|gb|EFO04470.1| Type II secretion system F domain protein [Methylobacter
tundripaludum SV96]
Length = 404
Score = 39.4 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L +ESG+ +D++L + + + + +++ + + ++ A E Q
Sbjct: 73 LATLLESGLPLDKSLLVLID-LTEDNERVTKLIGRVLEKVKGGATLADALEK-----QSG 126
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+I++ G S+G+ L L R ++ A + P + + M + L
Sbjct: 127 IFSKFYLNMIRAGEAGGSLGEVLGRLSEYLERSRELKETVSTALIYPAILLIMSLASL-F 185
Query: 310 LILVIIGPAILSIIDT 325
++L + P + ++
Sbjct: 186 VMLTFVVPQFSEMFES 201
>gi|294792016|ref|ZP_06757164.1| putative bacterial type II secretion system protein F domain
protein [Veillonella sp. 6_1_27]
gi|294457246|gb|EFG25608.1| putative bacterial type II secretion system protein F domain
protein [Veillonella sp. 6_1_27]
Length = 390
Score = 39.4 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 64/167 (38%), Gaps = 15/167 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G+ + + + +K + + D L + +ESG+ + +AL+ + +
Sbjct: 36 GYRIYRISLQDERKKHKWN-HTMVVDVTYQLGLLIESGVPLRRALQLLCQGKR------V 88
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ A + + AL++S ++G+SL+ +
Sbjct: 89 LLYTALYESIERGQTLSQAL-------RSEGCPPIALALLESGEAAGTLGESLQYISRHY 141
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
ER ++ + +A + L + +++ ++ ++ I P+ + TM
Sbjct: 142 DWERQLKQKVMSA-ISYPLFLLLMMNIFFLVTILFIIPSFEKVFTTM 187
>gi|190572738|ref|YP_001970583.1| putative general secretion pathway protein F [Stenotrophomonas
maltophilia K279a]
gi|190010660|emb|CAQ44269.1| putative general secretion pathway protein F [Stenotrophomonas
maltophilia K279a]
Length = 406
Score = 39.4 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 49/144 (34%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G +D+AL + + + + A E
Sbjct: 69 LLQFTQQLATLLGAGQPLDRALSILLGLPEDERS--RRAITDIRDVVRGGAPLSTALER- 125
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q ++++ G S+ ++L+ L R ++ + A + P + + +
Sbjct: 126 ----QHGLFSRLYVNMVRAGEAGGSLHETLQRLADYLERSRALQGKVINALVYPAILLVV 181
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L + +L + P + +++
Sbjct: 182 VGGAL-LFLLGYVVPQFAQMYESL 204
>gi|89892803|ref|YP_516290.1| hypothetical protein DSY0057 [Desulfitobacterium hafniense Y51]
gi|89332251|dbj|BAE81846.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 309
Score = 39.4 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 5/181 (2%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
++ + +F V ++ P W+ + I AL
Sbjct: 80 MLCALSLLFFAVGASIAVMLSNFFLVPVMAMGCMLLPFWWVKLTASHFKKDIAAELETAL 139
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN-RQVAFENFYNRT 246
++ I A+ E++ + P+ ++ + + A + R
Sbjct: 140 SIITTAYLRNEDILTAVE---ENLPYLNPPVLSVFKGFVSRVRLVDPNVTAALHDVKMRI 196
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
ALI S+ +L +VS+ R++ E + P+ +++
Sbjct: 197 DNAVFHEWCDALISCQHD-RSLKTTLTPIVSKLSDMRVVNGELENMVFEPRKEFIIMVVL 255
Query: 307 L 307
+
Sbjct: 256 V 256
>gi|301169007|emb|CBW28604.1| putative type IV pilin secretion protein [Haemophilus influenzae
10810]
Length = 405
Score = 39.4 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 14/222 (6%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + I + + L + L A+ + + F +
Sbjct: 184 VPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQTWFHQK 243
Query: 173 QKRQSSIK---------RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
+ + SI + L I +++GI ++QAL +
Sbjct: 244 KNQLISITPIFGTIQKLSRLVNFSQSLQIMLQAGIPLNQALDSFLPRTQTWQTKTLVNDI 303
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ E+ + F + D Q ++Q + L + + +
Sbjct: 304 ILDKEVRSILQWVSQGYAFSDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKL 363
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + P+++ + LI +I+ L I +
Sbjct: 364 NHQIDLLSQ-----MLEPLMMVIIGSLIGIIMMGMYLPIFNM 400
>gi|110802764|ref|YP_699126.1| pilus biogenesis protein [Clostridium perfringens SM101]
gi|110683265|gb|ABG86635.1| putative pilus biogenesis protein [Clostridium perfringens SM101]
Length = 339
Score = 39.4 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+ + ++L + + G+ E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMPVGRSLDLIKNTVKGKK--YKESLKRIEKKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ N + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGNLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYITYILPQFVDMYE 141
>gi|282899279|ref|ZP_06307250.1| type II secretion system protein [Cylindrospermopsis raciborskii
CS-505]
gi|281195848|gb|EFA70774.1| type II secretion system protein [Cylindrospermopsis raciborskii
CS-505]
Length = 419
Score = 39.4 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 52/144 (36%), Gaps = 12/144 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
V SG++I ++L ++ + + L + + ++ N + + +
Sbjct: 84 FSRQFATLVNSGVTIIKSLDIIS--LQCPNPKLKKALNQISTDIKTGINLSDSMKKHPDC 141
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+++Q+ G + D L L ++ + K+A L+ P+ +
Sbjct: 142 -----FDALYISMVQAGEAGGVLDDVLHRLAKLLEDLAKLQNQIKSA-----LSYPIFVG 191
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+ I + + I+ I + +
Sbjct: 192 CFAIAIALAMTIFIIPIFANVFKN 215
>gi|266619934|ref|ZP_06112869.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288868472|gb|EFD00771.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 292
Score = 39.4 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 33/255 (12%), Positives = 71/255 (27%), Gaps = 31/255 (12%)
Query: 52 REILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEY 111
R + Q+ + +L + + L + + L AG
Sbjct: 29 SRTSRTMLMVRKQQGGRNEKLAEVYLTKIAVLLAPCLKLDRLRRNKLQSALNIAGLELTP 88
Query: 112 SLNILLVVRLVVPIIFLILGIIWIF--------GYDKLLEYPFQLRVGAVILIGYVGFCA 163
+ L +++ G L + +
Sbjct: 89 EVYTAKAWVTAGMTGLCALPAVFVMPLMVPLIIGLAVALWFSTYYAAFDFV--------- 139
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
+KR+ I+ P + +E+ + + L G E+
Sbjct: 140 ---------RKRRKLIEAEIPRFALTIGQNLENDRDVLKILTSYRRVAGR---DFGAELD 187
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
TIA++ N + A +F R + + + L+ R G +++ + R
Sbjct: 188 QTIADM-ITSNYENALLHFETRIGSPMLSDVIRGLVGVLR-GDDQRMYFKMICFDMRQIE 245
Query: 284 LMEAEKKAASLGPKL 298
+K+AA K+
Sbjct: 246 QNNLKKEAAKRPKKI 260
>gi|18310825|ref|NP_562759.1| fimbrial assembly protein [Clostridium perfringens str. 13]
gi|18145507|dbj|BAB81549.1| probable fimbrial assembly protein [Clostridium perfringens str.
13]
Length = 339
Score = 39.4 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+SI ++L + + + E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKK--YKESLKRIERKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ N + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGNLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYVTYILPQFVDMYE 141
>gi|291616286|ref|YP_003519028.1| HofC [Pantoea ananatis LMG 20103]
gi|291151316|gb|ADD75900.1| HofC [Pantoea ananatis LMG 20103]
Length = 404
Score = 39.4 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 18/216 (8%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + V I ++L + F L ++L+
Sbjct: 191 LPEFVSVYASFNAPLPAFTAAVIGLSERLQAWGFPLSGLIILLVAGWQQWRRRSENWQRR 250
Query: 173 QKRQSSIK---------RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
++R +L + ++G+++ Q L A + S + +
Sbjct: 251 EQRVLMHIPIVGGLWQGNQLTQIYSVLQLTQQAGLTLLQGLE--AAKVTLSSRLWQDAIR 308
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
L ++ +A + LIQ ++ L L +
Sbjct: 309 LLQNHIAQGNPLYLAL------SNHPLFSPLCSQLIQVGEEAGALDVMLARLAEWHEGQT 362
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
LM A+ AASL P + V +I + L++ + P
Sbjct: 363 LMRADNLAASLEPVMMV-VIGGIVGTLVIAMYLPVF 397
>gi|331004876|ref|ZP_08328293.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989]
gi|330421330|gb|EGG95579.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC1989]
Length = 408
Score = 39.4 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 10/154 (6%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR+ + ++G+ + Q L ++ I S PL E ++ L
Sbjct: 62 KRKKVSDEELVMFCRQMYTINKAGLPLMQGLESLSVSI--SSGPLQECLIDVTHRLETGV 119
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAA 292
+ A + N +I+ + + + R ++ K A
Sbjct: 120 SLSSAMGYHRH-----IFNNLFLGMIKIGEETGKLDNIFAQMGVYISRDIETKKSIKSAL 174
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ M++ V ++VI PA +
Sbjct: 175 RYPSFVLSAMVVALFVVNLMVI--PAFADMFSRF 206
>gi|258511183|ref|YP_003184617.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257477909|gb|ACV58228.1| hypothetical protein Aaci_1197 [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 293
Score = 39.4 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 22/210 (10%), Positives = 66/210 (31%), Gaps = 4/210 (1%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
VR + I ++G E + + ++R++
Sbjct: 61 GVRPGILIAGTVIGFAVGAIVLSFAEKSVVFGILVSLAASVAVAVG--WIRRRYRKQRRA 118
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+A+ + + + + ++ A VA I +E +L +
Sbjct: 119 LFDAILREAMPIAITTLRATNRLEAAFEDVAR-IARDKRLKTEFDMLAKTWRGLRVTPEQ 177
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A +R +++ + +A ++ +Y + + + + + +A +L +
Sbjct: 178 ALMLAASRWEIEEIVQLAKATEEATKYHADLAELWLKYREQIERDEDKRRKLRAKTLAGR 237
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+I + V + + P + + +
Sbjct: 238 RNG-LIYAGIVVSMFGLAYPRVQRYMTPLA 266
>gi|307595026|ref|YP_003901343.1| type II secretion system F domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550227|gb|ADN50292.1| Type II secretion system F domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 507
Score = 39.4 bits (90), Expect = 0.78, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 8/200 (4%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L +I I + +W + V + +I+ P + LL I
Sbjct: 32 LMPIPLITFLLTKSLFPSLILIPIPALPILLTLIWAAYSVDAVKENIEWELPFFVVLLDI 91
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G I A +S E L + A + +
Sbjct: 92 IHDVGGDITHAFEVSGRIGLKW---ISREWSLIRRYSLTTNSITKAMQLRARLHPSIEFQ 148
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSET---RSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+ Y +G+ +R + S S RL K+ + + +I+ L V
Sbjct: 149 RFINGYVSVWGYSGDLGNYVRSVESTYLSTLSNRLSSLSKQIIDIVVAIVSSLIVLILFV 208
Query: 310 LI--LVIIGPAILSIIDTMK 327
+I ++ + AIL ++ +
Sbjct: 209 IITTILGMNYAILYLMPAIA 228
>gi|145294433|ref|YP_001137254.1| hypothetical protein cgR_0388 [Corynebacterium glutamicum R]
gi|140844353|dbj|BAF53352.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 258
Score = 39.4 bits (90), Expect = 0.78, Method: Composition-based stats.
Identities = 23/192 (11%), Positives = 63/192 (32%), Gaps = 10/192 (5%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ L ++ + + +I+ + + + K+
Sbjct: 31 NGVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQTHAAAQRTKQ----SLQ 86
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L L + +G+++ A+ ++ LS + + + +
Sbjct: 87 LASFLSLCAGNLRAGVTMVDAMDYALDN-TTPDKFLSPTLQTAARQARSGGSGPRVLIDA 145
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ ++ S+R+G + + + S S++ +AA GP+ T +
Sbjct: 146 S----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATA-V 200
Query: 303 IIFFLPVLILVI 314
I+ LP+ L++
Sbjct: 201 ILTVLPLAGLLM 212
>gi|331701309|ref|YP_004398268.1| type II secretion system F domain-containing protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128652|gb|AEB73205.1| Type II secretion system F domain protein [Lactobacillus buchneri
NRRL B-30929]
Length = 353
Score = 39.4 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ D L + G S+ QAL + I LS + + I L +
Sbjct: 33 NFFDSLANLLSIGFSLTQAL----KFIADTDKQLSRGVNVVIGSLKSGREFSESVRPLIE 88
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
A L+ ++++G + D L L + R + KA + P L + +I+
Sbjct: 89 -------TQAYHQLLIAEKHG-QLSDILNELANFDRLRLKQLKKIKAMLVYP-LFLCLIL 139
Query: 305 FFLPVLILVIIGPAILSIIDT 325
L ++I V + P I ++ T
Sbjct: 140 GTLILMIRVYVLPQIQDLMPT 160
>gi|11498653|ref|NP_069881.1| flagellar assembly protein J [Archaeoglobus fulgidus DSM 4304]
gi|2649538|gb|AAB90189.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 541
Score = 39.4 bits (90), Expect = 0.82, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 82/230 (35%), Gaps = 14/230 (6%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVG-----AVILIGYVGF 161
+S+ I + +++PI F + + + + V +
Sbjct: 217 IKSKEQTAISRLAPMLIPIAFFAVLFLTVLPTLLNFTGGGLGILPKADYRGVGFLLAGLV 276
Query: 162 CAPSVWISNLVQKRQSSIKRAWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVPLSE 220
P +++ + ++ S A+ + L I +G+S+ +AL R+ + L E
Sbjct: 277 LLPVGYLARIDDQKISKRDEAFTAFIRSLGAIKSGAGVSVAEALSRIDQK---NLGELRE 333
Query: 221 EMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
++ LS + ++++E F + + T + + G ++ S
Sbjct: 334 LVMQLYRRLSMGLDAKLSWERFVGESGSYLISKLTAIFVDATDLGGDADVVGEIVSSSNL 393
Query: 281 SERLMEAEKKAASLG-PKLTVP----MIIFFLPVLILVIIGPAILSIIDT 325
L+ ++ S G L +P M+ L + ++ I +S +
Sbjct: 394 EMVLLRLKRDLISSGFINLIIPLHLAMVGLVLFITQILAIFSDYISNLFA 443
>gi|281357007|ref|ZP_06243497.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
gi|281316565|gb|EFB00589.1| Type II secretion system F domain protein [Victivallis vadensis
ATCC BAA-548]
Length = 419
Score = 39.4 bits (90), Expect = 0.84, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 19/144 (13%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
++ L I + +G+ + ++L + ++ + + T + A
Sbjct: 76 RKELTVVTRQLAILLSAGLPLIRSLHTLER--QAKNPAVKIVLSKTAETVEGGATFAEAL 133
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++++ ++ L L S +KAA + K+
Sbjct: 134 AQHPR-----SFDKLYLNMVRAGEASGAMEIILDRLASFM---------EKAARISGKVK 179
Query: 300 VPMIIFFLPVLILVIIGPAILSII 323
MI P ++L I A++ ++
Sbjct: 180 SAMIY---PCVVLTIALLAVVGLM 200
>gi|223982948|ref|ZP_03633160.1| hypothetical protein HOLDEFILI_00439 [Holdemania filiformis DSM
12042]
gi|223965109|gb|EEF69409.1| hypothetical protein HOLDEFILI_00439 [Holdemania filiformis DSM
12042]
Length = 290
Score = 39.4 bits (90), Expect = 0.85, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 5/184 (2%)
Query: 131 GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLL 190
I L + + ++ F PS + NL + Q ++ +
Sbjct: 64 AAILGTLCGLLCYATTEHWFYSAVIASLAVFFLPSFFYMNLKRLAQEKEEKEMLTYVSTA 123
Query: 191 LICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
++ + + + L+ A + PL +++ L + ++ + A ++ + +
Sbjct: 124 ILYIREDKNSLRILKDCAALVE---APLKKDLELCVGQIEANSDFAQALDDLEKKYEYSQ 180
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP--MIIFFLP 308
VRN L G + L T L+ + + + MI+ L
Sbjct: 181 VRNLHLLLKGKKIEGGRNEQLVDYLFDNTEESELLINDYRQKKAASRSVFYFMMILNLLA 240
Query: 309 VLIL 312
L++
Sbjct: 241 ALVM 244
>gi|121999149|ref|YP_001003936.1| general secretion pathway protein F [Halorhodospira halophila SL1]
gi|121590554|gb|ABM63134.1| general secretion pathway protein F [Halorhodospira halophila SL1]
Length = 410
Score = 39.0 bits (89), Expect = 0.87, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 53/154 (34%), Gaps = 8/154 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + V SG+ +++ LR V+ + L +L ++ +
Sbjct: 65 RRGVRAGDLALVTRQMATLVRSGLPLEEVLRTVSRQTERKR--LKSVLLAVRTRVTEGHS 122
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A +F + + + + + + L L + M + + +L
Sbjct: 123 LAQALGDFPHIFP-----DIYRTSVAAGEQSGHLEVVLERLAEYAEKRQQMRQKVQ-LAL 176
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ + ++ + V +L + P ++ + D +
Sbjct: 177 FYPILLTVMAILVTVALLGYVVPEVIQVFDNIGQ 210
>gi|118619398|ref|YP_907730.1| hypothetical protein MUL_4230 [Mycobacterium ulcerans Agy99]
gi|118571508|gb|ABL06259.1| conserved hypothetical alanine-rich membrane protein [Mycobacterium
ulcerans Agy99]
Length = 200
Score = 39.0 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 6/143 (4%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE-- 240
+ LD+ + SG+++ A L+ + L + VA+
Sbjct: 51 FASCLDVFATSLASGMAVP---AAAAATARSAPPGLARVLSRAAELLMLGADPSVAWSAP 107
Query: 241 -NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ V + +S G ++ D++ L +++R + A A G +
Sbjct: 108 PELPLSSVDGHVDALLRLARRSACSGAALSDAVGELAAQSRHDATHAATAAAERAGVLIA 167
Query: 300 VPMIIFFLPVLILVIIGPAILSI 322
P+ + FLP + + I P + +
Sbjct: 168 GPLGLCFLPAFVCLGIVPVLAGL 190
>gi|186680664|ref|YP_001863860.1| type II secretion system protein [Nostoc punctiforme PCC 73102]
gi|186463116|gb|ACC78917.1| type II secretion system protein [Nostoc punctiforme PCC 73102]
Length = 407
Score = 39.0 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 12/153 (7%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P + + + + + +G++I ++L ++E L + ++
Sbjct: 50 PDIALKKFQNSLVKVSVKDKAVFSRQFAVLMNAGVAIVRSLGVLSEQCSNTK--LKQALI 107
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ N + R DC ++IQ+ G + + L L
Sbjct: 108 EISNDVQSGMNLSESM-----RKHPDCFDGLYVSMIQAGEVGGVLDEVLNRLAKLLEDVA 162
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
++ + K+A L+ P ++ F+ V I + +
Sbjct: 163 RLQNQIKSA-----LSYPTVVGFIAVSIFLGMT 190
>gi|317046911|ref|YP_004114559.1| type II secretion system F domain-containing protein [Pantoea sp.
At-9b]
gi|316948528|gb|ADU68003.1| Type II secretion system F domain protein [Pantoea sp. At-9b]
Length = 399
Score = 39.0 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 30/216 (13%), Positives = 56/216 (25%), Gaps = 18/216 (8%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL- 171
L + V L + L +G +
Sbjct: 186 LPEFVAVYASFDAPLPALTASVMALSALFQAAALPLLLGCAMAAILAQQIYRRSAPWQRH 245
Query: 172 --------VQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
D+L + +G+++ Q+L+ V + E +
Sbjct: 246 CQLWLLRLPLLAPLWRGSQLTQIFDILQLTQRAGLTLLQSLQAVEVTLTSLLW--REAIS 303
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+S A T LI+ ++ L L R
Sbjct: 304 QLQQHISAGAPLHQALHQHQLFTP------LCAQLIKVGEEVGALDVMLSRLAEWHRENT 357
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
L AE AA+L P + + +I + L++ + P
Sbjct: 358 LGRAESLAAALEP-MMMVVIGGIVGTLVIAMYLPVF 392
>gi|399798|sp|P31743|GSPF_AERHY RecName: Full=General secretion pathway protein F
gi|809648|emb|CAA47127.1| ExeF [Aeromonas hydrophila]
Length = 388
Score = 39.0 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++ALR VAE L + +++ +
Sbjct: 42 RRGASTSELALITRQLATLVGAGLTIEEALRAVAEQCEKAH--LRSLVATVRSKVVEGYS 99
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M + A
Sbjct: 100 LADSLGAFPH-----VFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQA-- 152
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAIL 320
+ P+++ + V ++ I+ A++
Sbjct: 153 ---MIYPIVLTLVAVGVISILLTAVV 175
>gi|320102340|ref|YP_004177931.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319749622|gb|ADV61382.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 357
Score = 39.0 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 9/149 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
L + G+ +++ L + + G L + L A
Sbjct: 10 SNTLARFCRLWSQSLSGGVDLNRTLATLEQRFGQSG--LGSALGAVRRSLQGGATLVEAL 67
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E + +L++ ++LR L + + A + P +
Sbjct: 68 E------DSGAFDSFFVSLMRVAEARGGYAETLRELADHYEQRHRLIRTARGALIQPAIV 121
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+ + F + +L+ + PA S++ + D
Sbjct: 122 LAL-AFLVTILVASLALPAFASLLTDLGD 149
>gi|302390459|ref|YP_003826280.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
gi|302201087|gb|ADL08657.1| Type II secretion system F domain protein [Thermosediminibacter
oceani DSM 16646]
Length = 404
Score = 39.0 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
+ K+ L + +G+ I AL+ +A + ++ L + + L
Sbjct: 58 RRVGKQDLAVFCRQLATMLGAGLPIVPALQILA--MQAENKILRRNIEEIVRSLEGGETF 115
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
A I++ G S+ ++L L + E ++ + K+A
Sbjct: 116 HEALARL------QVFPPIMVHAIEAAELGGSLDEALEELAAHLEREHELQEKVKSA 166
>gi|332674441|gb|AEE71257.1| type II secretion system protein [Propionibacterium acnes 266]
Length = 273
Score = 39.0 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 78 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 134
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 135 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 194
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 195 RAKPRVVVRQVSIIIGVVLAGAL 217
>gi|149181786|ref|ZP_01860277.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1]
gi|148850527|gb|EDL64686.1| hypothetical protein BSG1_01190 [Bacillus sp. SG-1]
Length = 403
Score = 39.0 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 59/165 (35%), Gaps = 8/165 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ + + L +++G+++ A ++ S LS+ +
Sbjct: 44 VPETLLTKDIAIGNPVKLQHMVIFLRQFATLLQAGVTVVDATEILSS--QTGSKALSKAL 101
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
EL A + R + ++++ S+ ++L L + +
Sbjct: 102 DEVQLELKDGNPLSDALAK-HRRIFEPML----INMVRAGEASGSLDETLESLATHYEKQ 156
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + + +A P + + I + + +LV + P ++++
Sbjct: 157 HMTKQKIISALAYPAVVGVIAIAVV-IFLLVAVVPTFVTMLADFG 200
>gi|329939412|ref|ZP_08288748.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329301641|gb|EGG45535.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 316
Score = 39.0 bits (89), Expect = 1.00, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 73/284 (25%), Gaps = 25/284 (8%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
T + + + L R R + ++ S SS
Sbjct: 1 MTGIGAVGTGTGLACAGAAAWLLGGRNGGPGRARWLFADADSSASSDSSDSSDSSDSSGG 60
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGY 138
S + + A R LG W
Sbjct: 61 SGGSGGGAGAVGAEGRS---------------------AARRRRAQARVRGLGPEWWSVA 99
Query: 139 DKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGI 198
L + V ++ ++ VQ+ + A +L V +G
Sbjct: 100 VGALLALLGMSVLPLLAGVLGVPALRKARVARTVQRDRERRGEAVIALCAVLAGEVRAGR 159
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
+ALR A+D GG L +A F + A + +
Sbjct: 160 QPGEALRHAAQDSGG----LGGARAAVLAAARFGGDVPGALTEAARGPGAEGLLGLAACW 215
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ G + L L + R+ER A+ +A G + T M
Sbjct: 216 RVAVDRGAGLAAGLDRLEAALRAERDQRADLRAQLAGARSTAVM 259
>gi|320104346|ref|YP_004179937.1| type II secretion system F domain-containing protein [Isosphaera
pallida ATCC 43644]
gi|319751628|gb|ADV63388.1| Type II secretion system F domain protein [Isosphaera pallida ATCC
43644]
Length = 415
Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 22/137 (16%)
Query: 173 QKRQSSI------KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+KR+ S + L ++G+ I ++L+ + + L + +
Sbjct: 61 RKRKKSFTIGGLSNKKLCLFTRQLSTLQDAGLPILRSLKILEN--QAKPGVLKNVLGDVV 118
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
++ A +I++ G ++ L+ L
Sbjct: 119 EDIESGSTLSEAMAKHPK-----AFDRLYCNMIKAGEAGGALETILQRLADF-------- 165
Query: 287 AEKKAASLGPKLTVPMI 303
++KA SL ++ M+
Sbjct: 166 -KEKAQSLRRRIKGAMV 181
>gi|328950485|ref|YP_004367820.1| Type II secretion system F domain protein [Marinithermus
hydrothermalis DSM 14884]
gi|328450809|gb|AEB11710.1| Type II secretion system F domain protein [Marinithermus
hydrothermalis DSM 14884]
Length = 406
Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 17/146 (11%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ I QAL + ++ + ++ A +
Sbjct: 70 FSRQLATMLSAGLPIVQALAILER--QAENKKFKGILKEIRTDVEGGEPFSDALKKHS-- 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L+++ ++ L L + E + + ++A +T P I+
Sbjct: 126 ----AFTRLYINLVRAGETSGTLDLVLERLATFLEKELELRGKIRSA-----MTYPAIVL 176
Query: 306 FLPV----LILVIIGPAILSIIDTMK 327
+ +L I P I+ +
Sbjct: 177 VFAIGVTYFLLAGIVPQFAQILTDLG 202
>gi|330892307|gb|EGH24968.1| putative general secretion pathway protein F [Pseudomonas syringae
pv. mori str. 301020]
Length = 401
Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 8/153 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
KR+ D L I +E+G ++ AL A ++ + + +
Sbjct: 56 KRKKISDAEVARFTDQLAILLEAGQPLESALALQARQSDR--PAMASLLNGLLERVKGGS 113
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ VA + N +L+++ +G++L L + R M ++ +A
Sbjct: 114 SLSVAMGA-----EHRTFSNFYLSLVRAGEAAGMLGETLSQLATNLERSRAMRSDLISAL 168
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ P V + L VL+L + P + I +
Sbjct: 169 IYPAFLVCGVFGSL-VLLLTYVVPQFVPIFRDL 200
>gi|108761173|ref|YP_630731.1| general secretion pathway protein F [Myxococcus xanthus DK 1622]
gi|108465053|gb|ABF90238.1| general secretion pathway protein F [Myxococcus xanthus DK 1622]
Length = 418
Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 58/169 (34%), Gaps = 10/169 (5%)
Query: 159 VGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL 218
A + + L + R ++ L + +G+++ ++L + + +
Sbjct: 59 AALVARDIDLRKLGRGRVNT--DDVAIFTRQLSTLLGAGVTLVESLSALVDQVE--KERF 114
Query: 219 SEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSE 278
+ ++ + A ++++ ++ L L
Sbjct: 115 KRALSDIKQRVNEGSSLAEAMGQHPKIFPS-----IYVNMVRAGEASGALDAVLTRLADF 169
Query: 279 TRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
T ++ ++ + + L P + + + L L++ + P + I +TMK
Sbjct: 170 TENQARLQQKILSTMLYPAIMMVVGGGILVALMVF-VVPKVTKIFETMK 217
>gi|126696027|ref|YP_001090913.1| Type II secretory pathway component PulF-like protein
[Prochlorococcus marinus str. MIT 9301]
gi|126543070|gb|ABO17312.1| Type II secretory pathway component PulF-like protein
[Prochlorococcus marinus str. MIT 9301]
Length = 453
Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 15/137 (10%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
A L + +G+ + ++L +A+ S + + +S + +
Sbjct: 114 LAVATKQLSSMIRTGLPLLESLNIIADTSENIS--IRYSFKEIASGISKGSTMSEMLDKY 171
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL-------- 294
+AL+ + + ++L S ++ + K+A
Sbjct: 172 PE-----VFNEMYRALVSAGETAGLLPNTLDRQAKLLESLAKIKGQIKSALAYPSAIAIL 226
Query: 295 GPKLTVPMIIFFLPVLI 311
+ M++F +P+ +
Sbjct: 227 TVVIVFIMMLFVIPIFV 243
>gi|117619869|ref|YP_855104.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561276|gb|ABK38224.1| general secretion pathway protein F [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 406
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++AL+ VAE L + +++ +
Sbjct: 60 RRGASTAELAMITRQLATLVGAGLTIEEALKAVAEQCEKAH--LRSMVATVRSKVVEGYS 117
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M + A
Sbjct: 118 LADSLAAFPH-----VFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQA-- 170
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAIL 320
+ P+++ + + ++ I+ A++
Sbjct: 171 ---MIYPIVLTCVAIGVISILLTAVV 193
>gi|159041006|ref|YP_001540258.1| hypothetical protein Cmaq_0423 [Caldivirga maquilingensis IC-167]
gi|157919841|gb|ABW01268.1| hypothetical protein Cmaq_0423 [Caldivirga maquilingensis IC-167]
Length = 307
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 66/200 (33%), Gaps = 6/200 (3%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
+L + + P +V + + + + I P +
Sbjct: 33 VLVTLSFMNISLNIPLPSNYVYVSVYVASAALVILIASIPEYGRWRINNYITGELPIFIR 92
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
++ + +G++I + + + G + L + L++ A +
Sbjct: 93 VIRDGLSTGLTITETINLTFKQGGVLARELGGRLRLSVVGP---GELSAALMGLAHELNN 149
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-- 306
+ A+ L + R GT + L + E + + E +K + II
Sbjct: 150 RYLELASIVLESALRSGTKAAEVLDLAYRELDNVVVNELDKVNSLKPYIALAYTIIIIYV 209
Query: 307 -LPVLILVIIGPAILSIIDT 325
L +IL I+ P ++S+ T
Sbjct: 210 FLGSVILAILIPRLISVTST 229
>gi|289424230|ref|ZP_06426013.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
gi|289154927|gb|EFD03609.1| type II secretion system F domain protein [Propionibacterium acnes
SK187]
Length = 291
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 96 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 152
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 153 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 212
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 213 RAKPRVVVRQVSIIIGVVLAGAL 235
>gi|295129571|ref|YP_003580234.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
gi|291376277|gb|ADE00132.1| type II secretion system F domain protein [Propionibacterium acnes
SK137]
Length = 291
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 96 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 152
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 153 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 212
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 213 RAKPRVVVRQVSIIIGVVLAGAL 235
>gi|328757930|gb|EGF71546.1| type II secretion system F domain protein [Propionibacterium acnes
HL020PA1]
Length = 293
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|304313087|ref|YP_003812685.1| General secretion pathway protein F [gamma proteobacterium HdN1]
gi|301798820|emb|CBL47053.1| General secretion pathway protein F [gamma proteobacterium HdN1]
Length = 404
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R S L V +GI I+ ALR V++ + ++ ML + +
Sbjct: 58 RRGSMGSADLALVTRQLATLVRAGIPIEGALRAVSK--QSEKPKVASIMLAVRSRVVEGH 115
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ + A F + +A I + + + L L T S + + A
Sbjct: 116 SLESALAEFPQAFP-----DLYRATIGAGEHSGHLDLVLEQLSDYTESRHRTQRTIQGA- 169
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
+ P+++ VLI+V +
Sbjct: 170 ----MIYPIVLTAFAVLIVVGM 187
>gi|300867503|ref|ZP_07112154.1| type II secretion system protein [Oscillatoria sp. PCC 6506]
gi|300334497|emb|CBN57322.1| type II secretion system protein [Oscillatoria sp. PCC 6506]
Length = 375
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 8/140 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+G+++ + L + E + L + A++ A F
Sbjct: 35 LAIFARQFAAMFNAGVAMVRCLAVLNEQC--SNPKLKNALTSISADVEQGSELSTAMRKF 92
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D +++ + G + + L L ++E K+A PK TV
Sbjct: 93 P-----DVFDQLFLSMVGAGEVGGVLDEVLERLAVLMEKNHKTQSEIKSAMSYPK-TVLF 146
Query: 303 IIFFLPVLILVIIGPAILSI 322
I + + + + P I
Sbjct: 147 IAIIIFFAMTIFLLPTFAKI 166
>gi|294101766|ref|YP_003553624.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
gi|293616746|gb|ADE56900.1| Type II secretion system F domain protein [Aminobacterium
colombiense DSM 12261]
Length = 396
Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 22/218 (10%), Positives = 64/218 (29%), Gaps = 18/218 (8%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF------CAPSVWIS 169
V + ++ + + L F L VG I+ G +G
Sbjct: 186 FKVFPQIEAVLADLGIALPASTRLFLSFSKFFLTVGIGIICGVLGMLSFTNCFLKKSLWD 245
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ K + + + L + SG+ + +A++ + + +
Sbjct: 246 KIISKNKLWKEVFLSRSFQTLAALLNSGVPLLEAIKLSGSV--TGNKKVERSFFTVAENV 303
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ + R Q D ++ ++ +L ++ + E +
Sbjct: 304 EKGLSLGESL-----RFQEDFFSPLIVRILSLSEKSGTLRQTLPLVSDRLKEEAQDRMK- 357
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+ MI ++++ +G +++ +
Sbjct: 358 ---RIEVLAEPIMIFSLGGIVLIF-VGMLFFPLLNAFQ 391
>gi|302864764|ref|YP_003833401.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|315501058|ref|YP_004079945.1| type ii secretion system f domain protein [Micromonospora sp. L5]
gi|302567623|gb|ADL43825.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
gi|315407677|gb|ADU05794.1| Type II secretion system F domain protein [Micromonospora sp. L5]
Length = 299
Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 5/188 (2%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQA 203
+ +L+ P ++ ++R + A + L +G + QA
Sbjct: 75 FLLTGLPVVGLLVALAVPGVPWLFAVGRAEQRAIARVEAVGEWTRRLKDISATGQGLQQA 134
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSD- 262
+ I + EE+ A L + A F + ALI
Sbjct: 135 IIGT---IATAPEEIQEEVRTLAARLQAGWLARSALLAFADEIADPVADQVVAALILHLT 191
Query: 263 RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF-LPVLILVIIGPAILS 321
G +GD L + + +E E +A P+ V + L L ++ +
Sbjct: 192 DRGERLGDVLGSIATAASAEVATRREVEAKRTQPRFAVRFLTGMTLATLAYGLVNSDYIR 251
Query: 322 IIDTMKDH 329
T+
Sbjct: 252 PYGTLTGQ 259
>gi|160896747|ref|YP_001562329.1| type II secretion system protein [Delftia acidovorans SPH-1]
gi|160362331|gb|ABX33944.1| type II secretion system protein [Delftia acidovorans SPH-1]
Length = 405
Score = 38.6 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 8/161 (4%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ K+ L I + +G+S+D AL+ + E V + + +
Sbjct: 53 LAARALKKGRIKADDIQGMTTELAIMMRAGLSLDNALKVLVEM--SHKVQMQAMLQSVLD 110
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ A D + +++S + L LV +R +
Sbjct: 111 SVKAGMPLSQALGK-----HHDLFGDFYINMVRSGEASGQMSGVLNRLVEHMARQRALRD 165
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
+A++ P + + + + L V +L + P + + M D
Sbjct: 166 SVVSATIYPAILLGVAVLSL-VAMLGFVVPQFEQLFNDMGD 205
>gi|326204947|ref|ZP_08194799.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
gi|325984876|gb|EGD45720.1| Type II secretion system F domain [Clostridium papyrosolvens DSM
2782]
Length = 405
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 15/143 (10%), Positives = 49/143 (34%), Gaps = 8/143 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ +G+S+ L + Q+ L + M ++ + +
Sbjct: 65 LSILCRQFHTMLNAGVSVIGCLDLL--RSQTQNPTLRDAMSQLYEDVQKGKTLSESMKLL 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ ++I+ ++ L L + + ++++ A + P +
Sbjct: 123 SKVFPV-----LMVSMIEVGEVSGTLEQVLERLSVQFEKDTKVKSKVSTAMMYP-AVIGC 176
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
I + ++V I P ++++++
Sbjct: 177 IALVMVTFMIVFIVPKFVNMVNS 199
>gi|169831115|ref|YP_001717097.1| type II secretion system protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169637959|gb|ACA59465.1| type II secretion system protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 402
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 18/154 (11%), Positives = 52/154 (33%), Gaps = 8/154 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+ V + + L +++GI + +AL +++ I + L +
Sbjct: 50 VRGAVFRSRKVGLGDLTLFSRQLTSMLDAGIPLTRALFTLSKQIA--NPTLRNAVSDVAR 107
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + A ++ ++ G + ++L L ++ E+ +
Sbjct: 108 NVEGGQSFSDALSAHPG-----IFSTLFVSMTRAGEVGGFLSEALSRLSTQLEQEKSIRD 162
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILS 321
++AS P + + + +L + P +
Sbjct: 163 HVRSASFYPIAVLG-FAGVVVLAMLYFLVPVFMQ 195
>gi|290580424|ref|YP_003484816.1| putative histidine kinase [Streptococcus mutans NN2025]
gi|254997323|dbj|BAH87924.1| putative histidine kinase [Streptococcus mutans NN2025]
Length = 437
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 26/237 (10%), Positives = 61/237 (25%), Gaps = 9/237 (3%)
Query: 3 HYFFDLFDATELAVAITTA--VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
+F L L V + ++ L++ + G + E +A +
Sbjct: 5 KFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKIAQSSQQDAFNIS 64
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
QK+ + V+ L L + + VR
Sbjct: 65 KRSQKEMDKQKTWAMVLNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVR 124
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++F + ++ L F + + + + + R
Sbjct: 125 GQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFVFLGIIFLFIFVLFSRSKLRIKKEI 184
Query: 181 RAWPDALDLLLICVESGIS-------IDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
AL L + ++ I AL + + ++ + + +L
Sbjct: 185 EPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDLR 241
>gi|270284519|ref|ZP_05966266.2| potassium uptake protein [Bifidobacterium gallicum DSM 20093]
gi|270277059|gb|EFA22913.1| potassium uptake protein [Bifidobacterium gallicum DSM 20093]
Length = 658
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 18/190 (9%), Positives = 59/190 (31%), Gaps = 1/190 (0%)
Query: 1 MPHYFFDLFDAT-ELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQ 59
+P+ FF++ T + ++ A++ + R+ + + +
Sbjct: 280 VPNPFFEMMHPTMRFIAVLLAVLAGIIASQALISGAFTIVSEATRLNWMPHLQVRYPART 339
Query: 60 ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVV 119
+ + L + F ++ A + + + + + +I V
Sbjct: 340 RGQIYIPVVNGVLCVATIGVMLLFHDSEHIAAAYGLALTITMIMTSILVTVHLWHINRVS 399
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
++ ++F + +++ + + +I+I + + Q+R
Sbjct: 400 AVLFGVLFPTIMVMFFLASMAKFLHGGWFTMLLMIVILGIMYVWNEGTKIERAQRRHMRP 459
Query: 180 KRAWPDALDL 189
+ P L
Sbjct: 460 EDCLPVLQRL 469
>gi|148825424|ref|YP_001290177.1| putative type IV pilin secretion protein [Haemophilus influenzae
PittEE]
gi|229846386|ref|ZP_04466494.1| putative type IV pilin secretion protein [Haemophilus influenzae
7P49H1]
gi|148715584|gb|ABQ97794.1| putative type IV pilin secretion protein [Haemophilus influenzae
PittEE]
gi|229810479|gb|EEP46197.1| putative type IV pilin secretion protein [Haemophilus influenzae
7P49H1]
Length = 405
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 23/203 (11%), Positives = 58/203 (28%), Gaps = 15/203 (7%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS----------SIKRA 182
+ L+ + + + + I +K Q
Sbjct: 203 AILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQIWFHQKKNQLISVTPIFGTIQKLSR 262
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ L I +++G+ ++QAL ++ E+ + F
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N D Q ++Q + L + + + + + + + P+
Sbjct: 323 SNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQ-----MLEPL 377
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
++ + LI +I+ L I +
Sbjct: 378 MMVIIGSLIGIIMMGMYLPIFNM 400
>gi|296129670|ref|YP_003636920.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
gi|296021485|gb|ADG74721.1| Type II secretion system F domain protein [Cellulomonas flavigena
DSM 20109]
Length = 409
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 15/133 (11%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L ++SG+S+ +AL + E +S PL++ + ++ A
Sbjct: 75 MSRQLATMIDSGLSLLRALAILVE--QTESKPLAKILSQVRNDVEVGTAFSTALGKHPET 132
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL--------GPK 297
++++ G + +L + +E + A+ K+A
Sbjct: 133 FPP-----LMVNMVRAGEVGGFLDQTLVSIADNFETEVRLRAKIKSAMAYPVIVLVIAVL 187
Query: 298 LTVPMIIFFLPVL 310
V M++F +PV
Sbjct: 188 AVVGMLLFIVPVF 200
>gi|297627215|ref|YP_003688978.1| hypothetical protein PFREUD_20700 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922980|emb|CBL57562.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 265
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 9/169 (5%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
V ++ +G + ++ + A ++ + G + QAL
Sbjct: 59 VPHYVAWGLIACVLGATLAWELRMHRAERSAIKRSQEVAHACRVMSAQLRIGQTPAQALA 118
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
AE+ E + A + + + +A +R G
Sbjct: 119 VAAEE--------CEVLAGCRAAQQVGADVPRTLMAAGDLPGCSGLAALGRAWKLCERSG 170
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ + + + + + A+ A P+ T + + LP+L + +
Sbjct: 171 SPLAPAATRVSQTVDGDARLRADIAAELAVPRATGRL-LTALPLLGIGM 218
>gi|313817685|gb|EFS55399.1| type II secretion system F domain protein [Propionibacterium acnes
HL046PA2]
gi|314961705|gb|EFT05806.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA2]
gi|315086655|gb|EFT58631.1| type II secretion system F domain protein [Propionibacterium acnes
HL002PA3]
Length = 293
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|313792523|gb|EFS40609.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA1]
gi|313803524|gb|EFS44706.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA2]
gi|313806902|gb|EFS45400.1| type II secretion system F domain protein [Propionibacterium acnes
HL087PA2]
gi|313814177|gb|EFS51891.1| type II secretion system F domain protein [Propionibacterium acnes
HL025PA1]
gi|313821488|gb|EFS59202.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA1]
gi|313824567|gb|EFS62281.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA2]
gi|313826238|gb|EFS63952.1| type II secretion system F domain protein [Propionibacterium acnes
HL063PA1]
gi|313839669|gb|EFS77383.1| type II secretion system F domain protein [Propionibacterium acnes
HL086PA1]
gi|314926290|gb|EFS90121.1| type II secretion system F domain protein [Propionibacterium acnes
HL036PA3]
gi|314964235|gb|EFT08335.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA1]
gi|314980211|gb|EFT24305.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA2]
gi|314987067|gb|EFT31159.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA2]
gi|314990440|gb|EFT34531.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA3]
gi|315078858|gb|EFT50876.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA2]
gi|315083127|gb|EFT55103.1| type II secretion system F domain protein [Propionibacterium acnes
HL027PA2]
gi|315088059|gb|EFT60035.1| type II secretion system F domain protein [Propionibacterium acnes
HL072PA1]
gi|327333718|gb|EGE75435.1| membrane spanning protein [Propionibacterium acnes HL096PA3]
gi|327444423|gb|EGE91077.1| type II secretion system F domain protein [Propionibacterium acnes
HL013PA2]
gi|327457369|gb|EGF04024.1| type II secretion system F domain protein [Propionibacterium acnes
HL092PA1]
Length = 293
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|313771160|gb|EFS37126.1| type II secretion system F domain protein [Propionibacterium acnes
HL074PA1]
gi|313811814|gb|EFS49528.1| type II secretion system F domain protein [Propionibacterium acnes
HL083PA1]
gi|313832350|gb|EFS70064.1| type II secretion system F domain protein [Propionibacterium acnes
HL007PA1]
gi|313832809|gb|EFS70523.1| type II secretion system F domain protein [Propionibacterium acnes
HL056PA1]
gi|314975242|gb|EFT19337.1| type II secretion system F domain protein [Propionibacterium acnes
HL053PA1]
gi|314977657|gb|EFT21752.1| type II secretion system F domain protein [Propionibacterium acnes
HL045PA1]
gi|314985158|gb|EFT29250.1| type II secretion system F domain protein [Propionibacterium acnes
HL005PA1]
gi|315081601|gb|EFT53577.1| type II secretion system F domain protein [Propionibacterium acnes
HL078PA1]
gi|315097118|gb|EFT69094.1| type II secretion system F domain protein [Propionibacterium acnes
HL038PA1]
gi|327332545|gb|EGE74280.1| membrane spanning protein [Propionibacterium acnes HL096PA2]
gi|327446676|gb|EGE93330.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA2]
gi|327448881|gb|EGE95535.1| type II secretion system F domain protein [Propionibacterium acnes
HL043PA1]
gi|328759744|gb|EGF73340.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
Length = 293
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|149174204|ref|ZP_01852832.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM
8797]
gi|148847184|gb|EDL61519.1| type IV fimbrial assembly protein PilC [Planctomyces maris DSM
8797]
Length = 420
Score = 38.6 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 16/139 (11%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
L ++G+ I ++LR + + + PL + I ++ A
Sbjct: 82 QLCTFTRQLSTLQDAGLPILRSLRIL--EAQAKPGPLKASLDGVIEDIESGNTLSEAMAK 139
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
N ++++ G ++ L+ L +++A SL K+
Sbjct: 140 QPKC-----FDNLYVNMVKAGEAGGALEVILQRLAEF---------KERAQSLKKKVQGA 185
Query: 302 MIIFFLPVLILVIIGPAIL 320
MI + + +I I+
Sbjct: 186 MIYPVAVITVAGLIVGFIM 204
>gi|288931829|ref|YP_003435889.1| type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
gi|288894077|gb|ADC65614.1| Type II secretion system F domain protein [Ferroglobus placidus DSM
10642]
Length = 555
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 26/203 (12%), Positives = 74/203 (36%), Gaps = 4/203 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA-PSVWISNLVQKRQSSIKRAWP 184
+F + +I++ + LL + + + + P + + +K + IK
Sbjct: 268 LFALSMVIFLAVFTALLFANYVYHLIDLPFSFLMAISLTPLLIPGFVAKKEEGMIKDKDK 327
Query: 185 DALD-LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+A ++ + + L + L+E++ L N++ A+E F
Sbjct: 328 NAPSFIMSLGASASARGGNILESLKYLTAHDFGALTEDIRALYKRLKTRINKRRAWEKFA 387
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + + T +++ GT D+ ++ + + A +A S + +
Sbjct: 388 ISTNSNLIYRFTDMFVEALNLGTDPIDAAEIISENFIAINNLRAR-RAQSASSFVGIAYG 446
Query: 304 IFFLPVLILVIIGPAILSIIDTM 326
+ + + + I ++ ++ +
Sbjct: 447 V-IIGIAFALYISFGVVEAMNNL 468
>gi|152991618|ref|YP_001357339.1| type II secretion system protein F [Sulfurovum sp. NBC37-1]
gi|151423479|dbj|BAF70982.1| type II secretion system protein F [Sulfurovum sp. NBC37-1]
Length = 404
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 14/165 (8%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P+ S ++ L + SG++I A+R + + +S +
Sbjct: 43 PTREFSLEAFAKREMPGEMLATFSRELSSYLNSGMTILTAIRLLENQHENEKKYVS-FLN 101
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ + A + Q+L + + G + + L + + ++
Sbjct: 102 SIRTMIDEGKSLYHALNT-QKVYALPEF--FVQSLNIAGQSG-KMVEVLTNMGNFFSAQN 157
Query: 284 LMEAEKKAASLGPKLTVPMIIF----FLPVLILVIIGPAILSIID 324
++ + K A + P +IF + ++ + P I I +
Sbjct: 158 KVKKQVKGA-----MVYPTVIFTVAIAMTSFLIAFVVPKITGIFE 197
>gi|309810893|ref|ZP_07704694.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
gi|308435199|gb|EFP59030.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
Length = 232
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 3/130 (2%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLLTIAELSFLPNRQ 236
+ +D L+ + +G ++ AL + +G S S E +
Sbjct: 44 EAECLQLVDALVTVLRAGSAVTPALIMALDGVGATSAGGSATSAGWQRLRLEAVRDGDVV 103
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
+ + + A S R+G + D++ R+ R A A+ G
Sbjct: 104 QVWRDLGRLWRSAAFEEVAAAWQLSARHGCPLADAMEGAARSVRARRSHRACVDGATAGA 163
Query: 297 KLTVPMIIFF 306
K + +++
Sbjct: 164 KASTSVLLGL 173
>gi|56476318|ref|YP_157907.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
gi|56312361|emb|CAI07006.1| general secretion pathway protein F [Aromatoleum aromaticum EbN1]
Length = 438
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 47/139 (33%), Gaps = 8/139 (5%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + + +G+ +D+AL+ + ++ + + + A +
Sbjct: 108 LAVMLRAGLPLDRALKVMVSMSQR--PSITALLDDLLDSVKSGKGFSQALQPHQRLFG-- 163
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
+++S G +G+ L L E ++L + ++
Sbjct: 164 ---EFYINMVRSGEAGGQLGEVLSRLAEHL-ERTRALRESVVSALIYPAILVLVAAVSVF 219
Query: 310 LILVIIGPAILSIIDTMKD 328
L+L + P S+ + M +
Sbjct: 220 LMLAFVVPQFESLFNDMGE 238
>gi|23308787|ref|NP_599553.2| hypothetical protein NCgl0296 [Corynebacterium glutamicum ATCC
13032]
gi|62389199|ref|YP_224601.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
gi|41324532|emb|CAF18872.1| membrane protein [Corynebacterium glutamicum ATCC 13032]
Length = 258
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 22/192 (11%), Positives = 63/192 (32%), Gaps = 10/192 (5%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ L ++ + + +I+ + + + K+
Sbjct: 31 NGVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQTHAAAQRTKQ----SLQ 86
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L L + +G+++ A+ ++ LS + + + +
Sbjct: 87 LASFLSLCAGNLRAGVTMVDAMDYALDN-TTPDKFLSPTLQTAARQARSGGSGPRVLIDA 145
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ ++ S+R+G + + + S S++ +AA GP+ T +
Sbjct: 146 S----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATA-V 200
Query: 303 IIFFLPVLILVI 314
I+ LP+ +++
Sbjct: 201 ILTVLPLAGMLM 212
>gi|307595210|ref|YP_003901527.1| type II secretion system F domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550411|gb|ADN50476.1| Type II secretion system F domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 302
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 4/191 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ I + P+ + + I P + + + I P + ++
Sbjct: 33 VSIGKLTLSVPIPYGILGTTLTAIAIAAELLPLSITEYRLWRVNNEILVDMPAVVRVIRD 92
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN-RQVAFENFYNRTQMDCV 251
+ SG + + G+ L + I + S + + +
Sbjct: 93 GLGSGQPLVGVAEMLTRVGKGR---LGRIIAEAITKESMGITTMKEGLAEVSRELGNNYL 149
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
L + R G + ++L + + EK + +++ VL
Sbjct: 150 AVLAVILDTAIRSGARLQETLDMAYKSLEDMVSYQLEKANQVKPYLALIYVVMAIYVVLA 209
Query: 312 LVIIGPAILSI 322
+II + SI
Sbjct: 210 GIIIYLMMPSI 220
>gi|168206103|ref|ZP_02632108.1| putative pilus biogenesis protein [Clostridium perfringens E str.
JGS1987]
gi|169343782|ref|ZP_02864781.1| putative pilus biogenesis protein [Clostridium perfringens C str.
JGS1495]
gi|169298342|gb|EDS80432.1| putative pilus biogenesis protein [Clostridium perfringens C str.
JGS1495]
gi|170662446|gb|EDT15129.1| putative pilus biogenesis protein [Clostridium perfringens E str.
JGS1987]
Length = 339
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+SI ++L + + + E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMSIGRSLDLIKNTVKDKK--YKESLRRIEKKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGKLYP-----DLMKDMMRIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYVTYILPQFVDMYE 141
>gi|293380456|ref|ZP_06626523.1| type II secretion system F domain protein [Lactobacillus crispatus
214-1]
gi|290922963|gb|EFD99898.1| type II secretion system F domain protein [Lactobacillus crispatus
214-1]
Length = 333
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L +++G S+ ++ E + + M + + +
Sbjct: 20 FLDYLKHSLDNGFSLLNSI----ELMPALWPKRRQLMERMASRMKEGASFSTELLKLGFS 75
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + + G ++ + L+ L + R ++ + +A L+ P+++
Sbjct: 76 ------KTTVTQVNLALQQG-NLVECLQHLATLNRLKQEQMKKLRAE-----LSYPLVLA 123
Query: 306 FLPVLILVII 315
+ V++LV +
Sbjct: 124 IMMVILLVFM 133
>gi|325282694|ref|YP_004255235.1| Type II secretion system F domain-containing protein [Deinococcus
proteolyticus MRP]
gi|324314503|gb|ADY25618.1| Type II secretion system F domain protein [Deinococcus
proteolyticus MRP]
Length = 406
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 10/142 (7%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G+ + QAL + + I E + ++ A
Sbjct: 71 FSRQMATLINAGVPLVQALFIMQKQIE--HKSFQEVVRKVRIDVEGGLPLSEAMAKHPK- 127
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L+++ ++ L + E+ + K T+ ++
Sbjct: 128 ----AFNRLYLNLVRAGETSGTLELILGRIAD--FQEKDLALRGKVKKALTYPTIVLVFA 181
Query: 306 FLPV-LILVIIGPAILSIIDTM 326
L ++ + P I+ +M
Sbjct: 182 LLITWGLIRFVVPTFGDILTSM 203
>gi|296103140|ref|YP_003613286.1| general secretion pathway protein F [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057599|gb|ADF62337.1| general secretion pathway protein F [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 402
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 10/148 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L V + + ++ AL+ +++ + L+ + ++ AF F
Sbjct: 65 LSMFTRQLSTLVNASLPLESALKAISKQTEDKK--LAAMVTEIREKVVEGHTLFDAFSQF 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK-KAASLGPKLTVP 301
L+ + +GD L L + M+++ +A LTV
Sbjct: 123 PRT-----FDKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKSKLTQAMVYPITLTVV 177
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ ++LV + P ++ MK
Sbjct: 178 AVAVI--SILLVAVVPQVIEQFVHMKQQ 203
>gi|70608026|ref|YP_256896.1| hypothetical protein Saci_2318 [Sulfolobus acidocaldarius DSM 639]
gi|68568674|gb|AAY81603.1| conserved Archaeal membrane protein [Sulfolobus acidocaldarius DSM
639]
Length = 611
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 28/223 (12%), Positives = 81/223 (36%), Gaps = 18/223 (8%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW---- 167
+ + L++ + + + + + I + +++ ++G P +
Sbjct: 53 ASRLFLILLVCIVLAVMFISFALIIFLRFYRVTLLPAYLALSLVMLFLGVIIPPIAYLIS 112
Query: 168 ---ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
IS + K ++ + L +I ++SG+S R++ + + + ++
Sbjct: 113 ILDISQKIDKIKNGVDAESFSFATLFVIFLKSGLSPVLLFRKL--EGSKAFSFVQDIVVY 170
Query: 225 TIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ +L + + A + + A + + R G + +++ + + +
Sbjct: 171 VNRRVQYLSESIEQALLKAMDINPGKLFNDFMLAYVTAIRTGAPVIETMEAKLKDLSKQF 230
Query: 284 LMEAEKKAASLG-------PKLTVPMIIFFLPVLILVIIGPAI 319
+ A + L L+ I+ +L VLI+ I P +
Sbjct: 231 SLAANLASDRLQGVAESYVVWLSSGYIMLYL-VLIMGAILPFV 272
>gi|197117666|ref|YP_002138093.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem]
gi|197087026|gb|ACH38297.1| type II secretion system protein PulF [Geobacter bemidjiensis Bem]
Length = 401
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 10/146 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ A L + SGI I +A+R + + L +LL + + A
Sbjct: 264 RYALAGFTRTLATVLGSGIPIVEAMRMSVGTL--NNKVLERGLLLAVHRVEEGSKLSTAL 321
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
E ++ S+ + L + E + S+ P +
Sbjct: 322 EGMKLMPP------LALRMLTVGETTGSLEEMLSDISDYFEEEIERDLHVLTTSIEPAIM 375
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDT 325
V M + +I+V + I I T
Sbjct: 376 VAMGVVI--GVIIVTMYLPIFKIAST 399
>gi|261339185|ref|ZP_05967043.1| hypothetical protein ENTCAN_05411 [Enterobacter cancerogenus ATCC
35316]
gi|288319032|gb|EFC57970.1| general secretion pathway protein F [Enterobacter cancerogenus ATCC
35316]
Length = 402
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 10/163 (6%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ + L V + + ++ AL+ +++ + L+ ++
Sbjct: 50 VAGKAKTGTKLSTPVLSMFTRQLSTLVNAALPLESALKAISKQTEDKK--LAAMVVEIRE 107
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ AF F L+ + +GD L L + M++
Sbjct: 108 KVVEGHTLFDAFSQFPRT-----FDKLYCTLVMAGEKTGHLGDVLEKLAEYNEQRQKMKS 162
Query: 288 EK-KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ +A LTV I ++LV + P ++ MK
Sbjct: 163 KLTQAMVYPITLTVVAIAVI--SILLVAVVPQVIEQFTHMKQQ 203
>gi|21323066|dbj|BAB97695.1| Hypothetical membrane protein [Corynebacterium glutamicum ATCC
13032]
Length = 272
Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 22/192 (11%), Positives = 63/192 (32%), Gaps = 10/192 (5%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ L ++ + + +I+ + + + K+
Sbjct: 45 NGVHLFALIALFCLATVLFIVVDAYTMIAGIIIATTLFWYLRQTHAAAQRTKQ----SLQ 100
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L L + +G+++ A+ ++ LS + + + +
Sbjct: 101 LASFLSLCAGNLRAGVTMVDAMDYALDN-TTPDKFLSPTLQTAARQARSGGSGPRVLIDA 159
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ ++ S+R+G + + + S S++ +AA GP+ T +
Sbjct: 160 S----LPDLQRLGHLWETSERHGIPLVALIDQMRSRISSKQRHGESTRAALQGPQATA-V 214
Query: 303 IIFFLPVLILVI 314
I+ LP+ +++
Sbjct: 215 ILTVLPLAGMLM 226
>gi|126700914|ref|YP_001089811.1| putative type IV pilus-assembly protein [Clostridium difficile 630]
gi|254976894|ref|ZP_05273366.1| putative type IV pilus-assembly protein [Clostridium difficile
QCD-66c26]
gi|255094281|ref|ZP_05323759.1| putative type IV pilus-assembly protein [Clostridium difficile CIP
107932]
gi|255316034|ref|ZP_05357617.1| putative type IV pilus-assembly protein [Clostridium difficile
QCD-76w55]
gi|255518691|ref|ZP_05386367.1| putative type IV pilus-assembly protein [Clostridium difficile
QCD-97b34]
gi|255651813|ref|ZP_05398715.1| putative type IV pilus-assembly protein [Clostridium difficile
QCD-37x79]
gi|260684839|ref|YP_003216124.1| putative type IV pilus-assembly protein [Clostridium difficile
CD196]
gi|260688497|ref|YP_003219631.1| putative type IV pilus-assembly protein [Clostridium difficile
R20291]
gi|306521601|ref|ZP_07407948.1| putative type IV pilus-assembly protein [Clostridium difficile
QCD-32g58]
gi|115252351|emb|CAJ70192.1| putative type II secretion system protein [Clostridium difficile]
gi|260211002|emb|CBA66306.1| putative type IV pilus-assembly protein [Clostridium difficile
CD196]
gi|260214514|emb|CBE07020.1| putative type IV pilus-assembly protein [Clostridium difficile
R20291]
Length = 361
Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + SGI I +A+ A I + + E + ++ + + +
Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVID--NEFIYERLKISNNYIKKGNSIGKSLNLAN-- 286
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + SL V+ +E + E+ + P + + +
Sbjct: 287 ----VFPKLFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEP-MLIVFMGL 341
Query: 306 FLPVLILVIIGPAI 319
+ IL ++ P
Sbjct: 342 IIGTFILAMVVPMF 355
>gi|56459482|ref|YP_154763.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
gi|56178492|gb|AAV81214.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
Length = 412
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ ++GI + +A+ +A+ Q+ L + + +L N A +
Sbjct: 73 LIIFCRQMYSLTQAGIPMLRAIEGLADT--TQNKRLRKTLQDVHEQLERGRNLSSAMSHH 130
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
A++ + +S + L E+ KAA+ P +
Sbjct: 131 RGVFP-----RLVIAIVHVGENTGQLEESFQQLSVYLEKEQDTRKRIKAATRYPSFVLIA 185
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
++ + VL + +I P S+
Sbjct: 186 LVIAMFVLNIFVI-PTFASMFSRF 208
>gi|310778053|ref|YP_003966386.1| Type II secretion system F domain protein [Ilyobacter polytropus
DSM 2926]
gi|309747376|gb|ADO82038.1| Type II secretion system F domain protein [Ilyobacter polytropus
DSM 2926]
Length = 402
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 12/125 (9%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L +E+GISI AL A+ + L + I ++ + A
Sbjct: 65 MTQFTTELSTLIEAGISIVSALEIEAKQLKD--GVLKTAISKAIEDIKGGESFSDALSKH 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ L++S + + L L ++ K+A + P
Sbjct: 123 PK-----VFKKIYTGLVKSGEVSGQLDNILLDLAKYLDVSYKNRSKVKSA-----IIYPC 172
Query: 303 IIFFL 307
++F +
Sbjct: 173 VMFIV 177
>gi|256842813|ref|ZP_05548301.1| competence protein [Lactobacillus crispatus 125-2-CHN]
gi|256614233|gb|EEU19434.1| competence protein [Lactobacillus crispatus 125-2-CHN]
Length = 333
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L +++G S+ ++ E + + M + + +
Sbjct: 20 FLDYLKHSLDNGFSLLNSI----ELMPALWPKRRQLMERMASSMKEGASFSTELLKLGFS 75
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + + G ++ + L+ L + R ++ + +A L+ P+++
Sbjct: 76 ------KTTVTQVNLALQQG-NLVECLQHLATLNRLKQEQMKKLRAE-----LSYPLVLA 123
Query: 306 FLPVLILVII 315
+ V++LV +
Sbjct: 124 IMMVILLVFM 133
>gi|327310804|ref|YP_004337701.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
gi|326947283|gb|AEA12389.1| type II secretion system protein [Thermoproteus uzoniensis 768-20]
Length = 250
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 4/180 (2%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + ++ ++ PDAL + V G+ + A
Sbjct: 2 LPESWLPFLAASASLLFFVLGYRPYRRAVFRARLESQIPDALRAIADAVSGGLDLRSAFE 61
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFL-PNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
V+ P+++ +A S A + + + ++++ R
Sbjct: 62 VVSTL---GLSPIADVFRRVVALSSVGGATAPDALWSVAEELGVPNFKRFALIVVEAARS 118
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
G + + L + + A L ++ L V++ + +
Sbjct: 119 GAKLPEVLGTAARTFATVVEFRRDLSAQLRPYVLLYYAVVGVFAALSDVLVYFMLPRLAQ 178
>gi|255308367|ref|ZP_05352538.1| putative type IV pilus-assembly protein [Clostridium difficile ATCC
43255]
Length = 361
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + SGI I +A+ A I + + E + ++ + + +
Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVID--NEFIYERLKISNNYIKKGNSIGKSLNLAN-- 286
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + SL V+ +E + E+ + P + + +
Sbjct: 287 ----IFPKLFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEP-MLIVFMGL 341
Query: 306 FLPVLILVIIGPAI 319
+ IL ++ P
Sbjct: 342 IIGTFILAMVVPMF 355
>gi|145628636|ref|ZP_01784436.1| putative type IV pilin secretion protein [Haemophilus influenzae
22.1-21]
gi|144979106|gb|EDJ88792.1| putative type IV pilin secretion protein [Haemophilus influenzae
22.1-21]
Length = 405
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 25/222 (11%), Positives = 66/222 (29%), Gaps = 14/222 (6%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + I + + L + L A+ + + F +
Sbjct: 184 VPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQTWFHQK 243
Query: 173 QKRQSSIK---------RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
+ + SI + L I +++G+ ++QAL +
Sbjct: 244 KNQLISITPIFGTIQKLSRLVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDI 303
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ E+ + F + D Q ++Q + L + + +
Sbjct: 304 VLDKEVRSILQWVSQGYAFSDSISSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKL 363
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + P+++ + LI +I+ L I +
Sbjct: 364 NHQIDLLSQ-----MLEPLMMVIIGSLIGIIMMGMYLPIFNM 400
>gi|298675221|ref|YP_003726971.1| type II secretion system F domain-containing protein
[Methanohalobium evestigatum Z-7303]
gi|298288209|gb|ADI74175.1| Type II secretion system F domain protein [Methanohalobium
evestigatum Z-7303]
Length = 550
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 8/162 (4%)
Query: 116 LLVVRLVVPIIFLIL--GIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQ 173
+ + +P++F + ++ L PF + + +I + + ++I N +
Sbjct: 16 FYIKKYAIPLVFFGILTSVLIYLIVPWLFTGPFISILILIPIICTIIVFSYPIYIVNAQK 75
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS-FL 232
R I + + + +R V+++ L+EE +S +
Sbjct: 76 TR---INNNMHYYITQMGAVATANTPRIDVIRIVSKN--EDFQDLAEENREIYNLVSVWN 130
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
N A + RT + + G ++ + L
Sbjct: 131 LNLGDACKFVSKRTPSVIFEDFLDRFAHALHSGENVNEFLST 172
>gi|260596530|ref|YP_003209101.1| type IV pilin biogenesis protein [Cronobacter turicensis z3032]
gi|260215707|emb|CBA28060.1| Protein transport protein hofC [Cronobacter turicensis z3032]
Length = 406
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+L + +GI + Q+L V E + S + + ++ A E
Sbjct: 269 LSQIYTVLSLMQGAGIPLLQSLSSVEETLA--SPLWRQAVRRVKEGIASGLPLWRALE-- 324
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
Q L+++ S+ L L ++ A+ AA+L P + M
Sbjct: 325 ----QETVFTALCIQLVRTGEETGSLDLMLEKLAGWHLAQTSERAQTLAATLEPLMM--M 378
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+I + ++V + I + D M
Sbjct: 379 VIGLIVGTLVVAMYLPIFRLGDAMS 403
>gi|20091901|ref|NP_617976.1| flagellar assembly protein J [Methanosarcina acetivorans C2A]
gi|19917097|gb|AAM06456.1| flagella accessory protein J [Methanosarcina acetivorans C2A]
Length = 520
Score = 38.2 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 95/234 (40%), Gaps = 15/234 (6%)
Query: 83 FVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLL 142
F+ L L I K+ A F+S+ I L+ R+++PI ++L + + G +
Sbjct: 197 FISGLALYIIYKAAPAEKKVHALRFKSKEQEQIRLLSRVLLPIGAIVLIALILRGTELKF 256
Query: 143 EYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV-ESGISID 201
IL+G F P I+ ++ + ++P + L +GI+I
Sbjct: 257 -----------ILLGVTVFTLPIGIIAMEDDRKINERDSSFPTFIKTLGTLAGTTGITIR 305
Query: 202 QALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQS 261
A+ ++ + G P EE+ + LS ++ +E F T + + ++ +
Sbjct: 306 SAMEKLDRENIGCLKPGVEELH---SGLSMGFKSKLCWEKFIGETGSELINRCSRIFTDA 362
Query: 262 DRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
G + ++ + + + L+ +++ S G + + + L++ ++
Sbjct: 363 VELGGDPAEIGNIVSNSSLAIVLLRMKRQMVSSGFRGLAIALHAVMVGLLVFVL 416
>gi|149174856|ref|ZP_01853480.1| fimbrial assembly protein PilC [Planctomyces maris DSM 8797]
gi|148846193|gb|EDL60532.1| fimbrial assembly protein PilC [Planctomyces maris DSM 8797]
Length = 507
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 63/228 (27%), Gaps = 16/228 (7%)
Query: 105 AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAP 164
AGF + + + + + + I D ++ F I +
Sbjct: 291 AGFIMYWIIPKFKKIFMDFDANLPTMTLTVINLSDFIIANFFLFLPIFSIPFTLLILIHM 350
Query: 165 SVWISNLVQKRQSSIKRAWP-----DALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
+ R +P D L + + + AL ++ +
Sbjct: 351 GNYFGW-SNLRIPLFTTWFPRLNTPDCLRQIAQSISAQQQPQIALSSASQY--HLWADVR 407
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
++ N + ++ + + AL + ++ + LR L
Sbjct: 408 IRSESVKNRVNQGENLWASLQHA------KIISRSEAALCVTAERVGNLPEVLRALALSI 461
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
R + A L K + + + L ++ + I+ +I
Sbjct: 462 EQRRNRKLRVLADLL--KPVIVCTLGLVVGLFVIALFIPIVQLIFDFS 507
>gi|309972542|gb|ADO95743.1| Type II secretory pathway, component PilC [Haemophilus influenzae
R2846]
Length = 405
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 25/222 (11%), Positives = 66/222 (29%), Gaps = 14/222 (6%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + I + + L + L A+ + + F +
Sbjct: 184 VPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQTWFHQK 243
Query: 173 QKRQSSIK---------RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
+ + SI + L I +++G+ ++QAL +
Sbjct: 244 KNQLISITPIFGTIQKLSRLVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDI 303
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ E+ + F + D Q ++Q + L + + +
Sbjct: 304 ILDKEVRSILQWVSQGYAFSDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKL 363
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + P+++ + LI +I+ L I +
Sbjct: 364 NHQIDLLSQ-----MLEPLMMVIIGSLIGIIMMGMYLPIFNM 400
>gi|325294496|ref|YP_004281010.1| type II secretion system F domain [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064944|gb|ADY72951.1| Type II secretion system F domain [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 404
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +GISI ALR + E I +S L + + + + A + N
Sbjct: 70 FTRQLYAMIHAGISIVTALRIIKEQIQNKS--LKKIIEDIASHIEEGGKFSTALSKYKN- 126
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
++I++ ++ ++L+ L + + K+A
Sbjct: 127 ----IFGELYISMIRAAEESGTLEETLKRLAEYLEKIEKLRGKIKSA 169
>gi|325107203|ref|YP_004268271.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324967471|gb|ADY58249.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 345
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 28/253 (11%), Positives = 74/253 (29%), Gaps = 35/253 (13%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW---------IFGYDKLLEYPFQ 147
+ A + + L++ V+ + +LG+I + G+
Sbjct: 104 RLRKDFYQA---ISWPVIQLVLAVFVIAGLIFLLGMIADSNQSEPIDVLGWGLTGTSGAL 160
Query: 148 LRVGAVILIGYVGFCAPSVWISNLVQKR-------------QSSIKRAWPDALDLLLICV 194
+G V + F + ++L +R A +
Sbjct: 161 TWLGLVFGGAFSFFICYRMLQASLFGQRYLDKFLLQVPILGNCLQSFAIARFAWSYHLTQ 220
Query: 195 ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
E+G+ +D+++ + ++ A + + +
Sbjct: 221 EAGMPVDESIDTATR--ATNNGAFMAAAPYINYDIRSGETVTDALRH------SNLFPSD 272
Query: 255 TQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+I ++ ++L L + E A LG + + + IF + V+ +
Sbjct: 273 VIEMIHVGETSGTVPETLERLGPHFEDQARRSLETLAGMLGWAVWIAVAIFIIFVVFSIA 332
Query: 315 IGPAILSIIDTMK 327
+ +I+ +
Sbjct: 333 FW--YIGLINELG 343
>gi|50841533|ref|YP_054760.1| membrane spanning protein [Propionibacterium acnes KPA171202]
gi|50839135|gb|AAT81802.1| membrane spanning protein [Propionibacterium acnes KPA171202]
gi|315107454|gb|EFT79430.1| type II secretion system F domain protein [Propionibacterium acnes
HL030PA1]
Length = 293
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|9507535|ref|NP_052542.1| integral membrane protein [Plasmid ColIb-P9]
gi|32470256|ref|NP_863480.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|83404879|ref|YP_424894.1| integral membrane protein [Escherichia coli]
gi|168758370|ref|ZP_02783377.1| integral membrane protein [Escherichia coli O157:H7 str. EC4401]
gi|168770669|ref|ZP_02795676.1| integral membrane protein [Escherichia coli O157:H7 str. EC4486]
gi|194447049|ref|YP_002039157.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194447184|ref|YP_002043948.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|195940167|ref|ZP_03085549.1| integral membrane protein [Escherichia coli O157:H7 str. EC4024]
gi|299836180|ref|YP_003717749.1| putative transmembrane protein [Escherichia coli ETEC 1392/75]
gi|300819638|ref|ZP_07099830.1| type II secretion system F domain protein [Escherichia coli MS
107-1]
gi|300907592|ref|ZP_07125227.1| type II secretion system F domain protein [Escherichia coli MS
84-1]
gi|301306614|ref|ZP_07212675.1| type II secretion system F domain protein [Escherichia coli MS
124-1]
gi|4512532|dbj|BAA75181.1| integral membrane protein [Plasmid ColIb-P9]
gi|4903093|dbj|BAA77978.1| integral membrane protein [Plasmid R64]
gi|20521624|dbj|BAB91688.1| PilR integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|46949074|gb|AAT07428.1| PilR [Escherichia coli]
gi|70610250|gb|AAZ05397.1| integral membrane protein [Salmonella enterica]
gi|83308605|emb|CAI79598.1| integral membrane protein [Escherichia coli]
gi|85813731|emb|CAJ65892.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|189354763|gb|EDU73182.1| integral membrane protein [Escherichia coli O157:H7 str. EC4401]
gi|189360487|gb|EDU78906.1| integral membrane protein [Escherichia coli O157:H7 str. EC4486]
gi|194358493|gb|ACF56937.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194405488|gb|ACF65709.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|297374529|emb|CBL93612.1| putative transmembrane protein [Escherichia coli ETEC 1392/75]
gi|300400660|gb|EFJ84198.1| type II secretion system F domain protein [Escherichia coli MS
84-1]
gi|300527805|gb|EFK48867.1| type II secretion system F domain protein [Escherichia coli MS
107-1]
gi|300838175|gb|EFK65935.1| type II secretion system F domain protein [Escherichia coli MS
124-1]
gi|315252983|gb|EFU32951.1| type II secretion system F domain protein [Escherichia coli MS
85-1]
gi|315295829|gb|EFU55146.1| type II secretion system F domain protein [Escherichia coli MS
16-3]
gi|321271463|gb|ADW79553.1| IncI1 conjugal transfer protein PilR [Escherichia coli]
gi|321271657|gb|ADW79745.1| IncI1 conjugal transfer pilus biogenesis protein PilR [Salmonella
enterica subsp. enterica serovar Kentucky]
gi|323133135|gb|ADX20563.1| integral membrane protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323959234|gb|EGB54898.1| type II secretion system protein F [Escherichia coli H489]
gi|330907918|gb|EGH36441.1| incI1 plasmid conjugative transfer inner membrane protein PilR
[Escherichia coli AA86]
Length = 365
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 16/194 (8%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD-- 185
LG ++ + Y V ++ G + + P+ + V+ I
Sbjct: 168 GALGFLYGLSV-FVDNYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQD 226
Query: 186 -----ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
L + +++ ++ +L + E S LS + I + + +A
Sbjct: 227 IQGATFLLNMAALLKAKMTTLNSLNILQEF---ASPWLSTRLDSIIYRVRQGDHLGLALR 283
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ N L G + + S+ L +K+A + + +
Sbjct: 284 QCGYQFPSREAANFLSLLQ-----GDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLI 338
Query: 301 PMIIFFLPVLILVI 314
+++ + ++ ++
Sbjct: 339 FLVMSLMLLVFAIM 352
>gi|312883018|ref|ZP_07742749.1| hypothetical protein VIBC2010_07014 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369178|gb|EFP96699.1| hypothetical protein VIBC2010_07014 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 387
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 31/87 (35%)
Query: 19 TTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSK 78
+ L+ + + L +KR++ EREI +++ + ++ S R+ +S
Sbjct: 3 IAIGATGLLLLGMFLWMLALSMRKKRLEQERKEREIAQRKALEKNRQKEQSERIAKAESG 62
Query: 79 SLRNFVKKLNLKAILVDENIVNKLRAA 105
+ + E V A
Sbjct: 63 HIPTILYLAKEAERAQPEEAVYWYTQA 89
>gi|256367614|ref|YP_003108173.1| integral membrane protein [Escherichia coli]
gi|228480869|gb|ACQ42195.1| integral membrane protein [Escherichia coli]
Length = 365
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 16/194 (8%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD-- 185
LG ++ + Y V ++ G + + P+ + V+ I
Sbjct: 168 GALGFLYGLSV-FVDNYGAICAVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQD 226
Query: 186 -----ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
L + +++ ++ +L + E S LS + I + + +A
Sbjct: 227 IQGATFLLNMAALLKAKMTTLNSLNILQEF---ASPWLSTRLDSIIYRVRQGDHLGLALR 283
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ N L G + + S+ L +K+A + + +
Sbjct: 284 QCGYQFPSREAANFLSLLQ-----GDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLI 338
Query: 301 PMIIFFLPVLILVI 314
+++ + ++ ++
Sbjct: 339 FLVMSLMLLVFAIM 352
>gi|188997645|ref|YP_001931896.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932712|gb|ACD67342.1| type II secretion system protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 406
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 10/154 (6%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
++ + L + +GI I QAL ++E + + L E ++ ++ +
Sbjct: 62 KKKVKEEDLAIFARQLGAMIGAGIGIAQALEILSEQMP--NPTLKEALINVKDDVITGMS 119
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + LI + + + L+ + E+L +K S
Sbjct: 120 LSKSMQKHPKVFPP-----FLINLIAAAEESGKLDEILKR--ATIYYEKLAAIRRKIISA 172
Query: 295 GPKLTVPMIIFFLPVL-ILVIIGPAILSIIDTMK 327
+II + VL +L + P I +
Sbjct: 173 SWYPAAVVIIATVIVLGLLTFVVPTFAEIYASFG 206
>gi|326475004|gb|EGD99013.1| hypothetical protein TESG_06375 [Trichophyton tonsurans CBS 112818]
gi|326483189|gb|EGE07199.1| hypothetical protein TEQG_06272 [Trichophyton equinum CBS 127.97]
Length = 383
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 15/165 (9%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+D+A + V ++ A + E + + AG + + + +
Sbjct: 126 QDAAMQERKLDQRPRANVIVMGHSVGAYMAMEIMRRRREKAGLQRQIQTHDVNGNGDTNG 185
Query: 125 IIFLILGIIWIFG------------YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ I+G I +F L Y L + + + P + + +V
Sbjct: 186 LGLDIIGGIMLFPTVVDIAKSPNGRILTKLLYIPCLPLLVSLFAWLLVLVLPEMLLYAVV 245
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVP 217
+ ++ A++ + + + + QAL A+++ S
Sbjct: 246 SR---FMRNPRKQAVETTVSMLRNAHIVRQALYMAADEMTEISAD 287
>gi|314922727|gb|EFS86558.1| type II secretion system F domain protein [Propionibacterium acnes
HL001PA1]
gi|314965811|gb|EFT09910.1| type II secretion system F domain protein [Propionibacterium acnes
HL082PA2]
gi|315094494|gb|EFT66470.1| type II secretion system F domain protein [Propionibacterium acnes
HL060PA1]
gi|315105215|gb|EFT77191.1| type II secretion system F domain protein [Propionibacterium acnes
HL050PA2]
gi|327328988|gb|EGE70748.1| membrane spanning protein [Propionibacterium acnes HL103PA1]
Length = 293
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|319775834|ref|YP_004138322.1| putative type IV pilin secretion protein [Haemophilus influenzae
F3047]
gi|319896630|ref|YP_004134823.1| type iv pilin secretion protein [Haemophilus influenzae F3031]
gi|317432132|emb|CBY80483.1| putative type IV pilin secretion protein [Haemophilus influenzae
F3031]
gi|317450425|emb|CBY86641.1| putative type IV pilin secretion protein [Haemophilus influenzae
F3047]
Length = 405
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 25/222 (11%), Positives = 66/222 (29%), Gaps = 14/222 (6%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + I + + L + L A+ + + F +
Sbjct: 184 VPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQTWFHQK 243
Query: 173 QKRQSSIK---------RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
+ + SI + L I +++G+ ++QAL +
Sbjct: 244 KNQLISITPIFGTIQKLSRLVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDI 303
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ E+ + F + D Q ++Q + L + + +
Sbjct: 304 ILDKEVRSILQWVSQGYAFSDSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKL 363
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + P+++ + LI +I+ L I +
Sbjct: 364 NHQIDLLSQ-----MLEPLMMVIIGSLIGIIMMGMYLPIFNM 400
>gi|305664054|ref|YP_003860342.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
gi|304378623|gb|ADM28462.1| Type II secretion system F domain [Ignisphaera aggregans DSM 17230]
Length = 302
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 56/151 (37%), Gaps = 4/151 (2%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+I + +++ D + L V +G S+ +L A+ IG PLS+ +
Sbjct: 79 YFIYRNRMVLINMLRKQVLDFIPLTSSYVATGASLLTSLEESAKIIGR---PLSDYVYRY 135
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ + + +F+ + +R ++ + G + + L +R +
Sbjct: 136 VEFVKMGRDPVESFDECFKIFPS-DLRAILSSIAIAITSGGRVSEMLMYADRYSRQMARL 194
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
E ++ G K + + I + +V +
Sbjct: 195 EELRRNRIEGYKAVIFLAIVAFIISAIVTLV 225
>gi|282853084|ref|ZP_06262421.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
gi|282582537|gb|EFB87917.1| type II secretion system F domain protein [Propionibacterium acnes
J139]
Length = 291
Score = 38.2 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 96 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 152
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 153 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 212
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 213 RAKPRVVVRQVSIIIGVVLAGAL 235
>gi|308274905|emb|CBX31504.1| hypothetical protein N47_E50160 [uncultured Desulfobacterium sp.]
Length = 391
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 29/269 (10%)
Query: 65 KDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVP 124
+ +S + +F++ + V L AG +L + + V+P
Sbjct: 131 QAGETSGSLDMVLVKIADFLETQASIKAKIRSATVYPLLMAGV---STLILFFLFSFVMP 187
Query: 125 IIFLILG------IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS 178
I I L + + + + + + Q
Sbjct: 188 KIVRIFTETGGSLPFLTVVIVALSNFVSKYWWAILAVSVAAAVSLRKILLKYRTQIDGII 247
Query: 179 I--------KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ + + + GI + +AL+ A+ IG + L +L ++ +++
Sbjct: 248 LKLPGNIIQSLYYARFARTMGALLGGGIPLLKALKLSAKSIG--NRKLENSVLNSVEKVA 305
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ LI + ++ +L + + E+
Sbjct: 306 AGQQMSSSL---------PGFPPIILRLISTGEKSGNLAQTLNRAAYSYEEQFNRKIERA 356
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ P + + M F + +++L ++ P
Sbjct: 357 LSLFEPIMILVMG-FVVCIIVLAVLLPIF 384
>gi|296120678|ref|YP_003628456.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296013018|gb|ADG66257.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 419
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 49/141 (34%), Gaps = 16/141 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ L ++G+ I ++LR + ++ + L ++ I ++ A
Sbjct: 79 AKQLCTFTRQLSTLQDAGLPILRSLRIL--EVQAKPGALKNSLMGVIEDIESGSTLSEAM 136
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
Q N ++++ G ++ L+ L +++ SL K+
Sbjct: 137 GK-----QPKAFDNLYVNMVRAGEAGGALEVILQRLAEF---------KERQQSLKRKVQ 182
Query: 300 VPMIIFFLPVLILVIIGPAIL 320
MI + + +I I+
Sbjct: 183 GAMIYPAAVITVATLIVGFIM 203
>gi|325290043|ref|YP_004266224.1| Type II secretion system F domain protein [Syntrophobotulus
glycolicus DSM 8271]
gi|324965444|gb|ADY56223.1| Type II secretion system F domain protein [Syntrophobotulus
glycolicus DSM 8271]
Length = 387
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 9/187 (4%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ L + L + I+ G+ W+ L R+ +L
Sbjct: 203 LLTKTVFTLGKMVPHLVISIPIITALAGWKYKQAWLERLPLIREIIKYHQLIHFCGILGR 262
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+E+GIS++++L ++ + + G L + L AF N
Sbjct: 263 LLEAGISVNESLEQLRKTVTG--PKLLGFIDDLQVRLLQGQPLDSAF--LANNYFPGETA 318
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
QS R+ ++L + + E + E+ + P + + I F + + L
Sbjct: 319 EILAVGEQSGRF----AETLLNISVIFKQELGTKMERMVKLIEPMMILG-ISFLVGFVAL 373
Query: 313 VIIGPAI 319
++ P
Sbjct: 374 GVLLPVF 380
>gi|314982954|gb|EFT27046.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA3]
gi|315091258|gb|EFT63234.1| type II secretion system F domain protein [Propionibacterium acnes
HL110PA4]
Length = 293
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|6176560|gb|AAF05620.1|AF190908_1 XpsF [Xanthomonas oryzae pv. oryzae]
Length = 156
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+++ A L + +G +D+AL + + + + +
Sbjct: 45 RKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMDLPEDEKS--RRVIGDVRDTVRGGA 102
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
A E Q ++++ G S+ D+L+ L R + +
Sbjct: 103 PLSSALER-----QHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKV 153
>gi|226227974|ref|YP_002762080.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
gi|226091165|dbj|BAH39610.1| type IV pilus assembly protein PilC [Gemmatimonas aurantiaca T-27]
Length = 398
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 12/130 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ +G+ + QAL +A+ ++ LS + + ++ A R
Sbjct: 64 FTRQFSTMINAGLPLVQALDILAK--QSENKALSAVVRQVVFDVESGNTVADAM-----R 116
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ + G + L L + + K A + P +I
Sbjct: 117 KHPKAFSDLYTNMVAAGEAGGILDTILNRLAIFMEKNDALVRKVKGA-----MIYPTVIM 171
Query: 306 FLPVLILVII 315
+ L +VI+
Sbjct: 172 CVAGLCVVIL 181
>gi|153003600|ref|YP_001377925.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5]
gi|152027173|gb|ABS24941.1| general secretion pathway protein F [Anaeromyxobacter sp. Fw109-5]
Length = 409
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 44/151 (29%), Gaps = 7/151 (4%)
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
++ R A L + +GI + +AL + + + L +
Sbjct: 53 KREVNVRRWMLGRVGARDLAVATRQLAVLAHAGIPLVEALTALVDQVE--HERLKRVLGD 110
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
++ A +I++ ++ L L T S+
Sbjct: 111 VKQRVNEGSALADALAAHPR-----VFSTLYVNMIRAGESSGALEIVLVRLADFTESQAR 165
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ ++ P + + + +L V+I
Sbjct: 166 LRSKIAGTMAYPIAMMVIGTLIMGILFTVVI 196
>gi|289427386|ref|ZP_06429099.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
gi|289159316|gb|EFD07507.1| type II secretion system F domain protein [Propionibacterium acnes
J165]
Length = 293
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 4/143 (2%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+ + RA + L+ +G S+ A+R L E + +A L
Sbjct: 98 RHDLDVMRALERWVRLVSGSASTGKSVIDAIRATRRQAPEL---LIEPLTRVVARLDSRW 154
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGD-SLRVLVSETRSERLMEAEKKAA 292
+ + A + + A++ + G + +L L + + E +
Sbjct: 155 DTRAALQGLADDLDSADADQVIAAIMMAAERGGTGATGTLDALAASLQERIRAAREIRVE 214
Query: 293 SLGPKLTVPMIIFFLPVLILVII 315
P++ V + + V++ +
Sbjct: 215 RAKPRVVVRQVSIIIGVVLAGAL 237
>gi|260438825|ref|ZP_05792641.1| type 4 fimbrial assembly protein PilC [Butyrivibrio crossotus DSM
2876]
gi|292808815|gb|EFF68020.1| type 4 fimbrial assembly protein PilC [Butyrivibrio crossotus DSM
2876]
Length = 403
Score = 38.2 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 54/145 (37%), Gaps = 15/145 (10%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+++G+ + AL + + ++ L + + + + +
Sbjct: 65 LSAFCRQFNSLLKAGVGVITALDMLGD--QTENRTLKQSIYNVRDGVQKGDTLANSMKK- 121
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE-RLMEAEKKAASLGPKLTVP 301
DC + +++++ +I +L + + R A KKA + P
Sbjct: 122 -----EDCFPSLLVSMMEAGEQSGNIEIALERMAEHFEKDGRAKAALKKA------MMYP 170
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+I+ + + +LVI+ A++ +M
Sbjct: 171 IILGIVAIAVLVIMVVAVIPSFSSM 195
>gi|182625667|ref|ZP_02953436.1| putative pilus biogenesis protein [Clostridium perfringens D str.
JGS1721]
gi|177909069|gb|EDT71544.1| putative pilus biogenesis protein [Clostridium perfringens D str.
JGS1721]
Length = 339
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+ I ++L + + + E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKK--YKESLKRIEKKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ N + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYVTYILPQFVDMYE 141
>gi|89895157|ref|YP_518644.1| hypothetical protein DSY2411 [Desulfitobacterium hafniense Y51]
gi|89334605|dbj|BAE84200.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 401
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 8/138 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + V SG ++ + L + + + L + + + I +S + A +
Sbjct: 67 FCSQLAMMVRSGANLVRGLEVLKLQLDDKQ--LQKVLEIIIQGVSRGDSLSQAMRDCKGA 124
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ L+ ++ L + E + + ++AS+ P + + M++
Sbjct: 125 LP-----DLLINLVAVGEESGNLESVLTSMAEYYDRENFIRKKIQSASVYPAILL-MVLI 178
Query: 306 FLPVLILVIIGPAILSII 323
+ V + + P I+ ++
Sbjct: 179 GIIVFFMNFLLPEIMGML 196
>gi|288921590|ref|ZP_06415862.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
gi|288347008|gb|EFC81313.1| hypothetical protein FrEUN1fDRAFT_5560 [Frankia sp. EUN1f]
Length = 294
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 65/208 (31%), Gaps = 16/208 (7%)
Query: 125 IIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP 184
+ +G++ +G VIL G P + + + A
Sbjct: 56 LGTAAVGLLIATATRLPALGLIVAVLGYVILENRAGMSVPQL----------TRLGDAVA 105
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ + +++G + A+ + L++ + A L A
Sbjct: 106 TWAEQIREGLDAGQHLRAAIAASTDH---PPAELADPLQRLAARLRSAMPLPDALWALRA 162
Query: 245 RTQMDCVRNATQALIQSDRYG-TSIGDSLRVLVSETRSERLMEAEKKAASLGPK--LTVP 301
+ AL + R G + + + TR + ++ A + +T+
Sbjct: 163 EVPHPTLGPVIIALDVAYRRGAGDLPRLMASQTAATREATALLRDQHALRARHRRAMTLL 222
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
+ +F + +L++ P L+ ++
Sbjct: 223 LALFTGAITVLLVAWPNFLAPYRNLQGQ 250
>gi|167628382|ref|YP_001678881.1| type ii secretion system protein, putative [Heliobacterium
modesticaldum Ice1]
gi|167591122|gb|ABZ82870.1| type ii secretion system protein, putative [Heliobacterium
modesticaldum Ice1]
Length = 415
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 8/153 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+S + L V +G++I AL + + ++ L + ++ +L
Sbjct: 68 RRSVPAKDLAVFCRQLSTLVNAGVAIHSALSILIQ--QSRNAALRQALIDLSGDLQRGFT 125
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A +I++ G + + L+ L + + KAA L
Sbjct: 126 LSQAVGRHPKVFP-----EVFVHMIEAGELGGVLEEVLQRLAGHFEKDNETRNKVKAA-L 179
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V +I +L + P ++ +
Sbjct: 180 TYPAVVLLIGMAAVAFLLGFVIPRFAGVLGELG 212
>gi|219852457|ref|YP_002466889.1| flagellar assembly protein J [Methanosphaerula palustris E1-9c]
gi|219546716|gb|ACL17166.1| type II secretion system protein [Methanosphaerula palustris E1-9c]
Length = 545
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 22/203 (10%), Positives = 69/203 (33%), Gaps = 14/203 (6%)
Query: 130 LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDL 189
L + + + +++G +G + +R +
Sbjct: 243 LVAVISLIMVAFGVNAGFVCLFIGLMMGPLGIIG--YIDDTNISQRDDDFSIFIRSLGSV 300
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
+ G ++ AL +V + PL + ++++ + + +E F + +
Sbjct: 301 MEGQ---GATLPIALDQVDKKSLIALEPL---VRSVHSKMNLGLDEEQIWERFIGESGSN 354
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV----PMIIF 305
+ + G G+ +V+ + ++ L+ ++ + + + M++
Sbjct: 355 LIYKYLNIFRDTVATGGPAGEIGKVVGNSMQNMVLLRQKRDMLAKSFIILLIPMHVMMVG 414
Query: 306 FLPVLI--LVIIGPAILSIIDTM 326
L L ++ + AI S+++
Sbjct: 415 ILVALFDIMLTLTTAITSMMNKF 437
>gi|160940638|ref|ZP_02087981.1| hypothetical protein CLOBOL_05532 [Clostridium bolteae ATCC
BAA-613]
gi|158436373|gb|EDP14140.1| hypothetical protein CLOBOL_05532 [Clostridium bolteae ATCC
BAA-613]
Length = 306
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 62/186 (33%), Gaps = 10/186 (5%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ +F ++ IL AP ++ + + A+ ++
Sbjct: 83 VLLFSLGAVVSLLLNNPFLIPILGAGFA-LAPVWYLRATASVYKKHLNEELETAISVVTT 141
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQMDCV 251
+ +A++ E+I + P+ I E N A + +
Sbjct: 142 SYLRSGDLMKAVK---ENIPYLNPPVKGNFEAFITEAEMLNANMISAINSLKMKIPNRIF 198
Query: 252 RNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA----SLGPKLTVPMIIFFL 307
LIQ + ++ ++L V + R+++ E +A + +++ +
Sbjct: 199 HEWCNTLIQC-QSDRNMMNTLTFTVQKFSDMRIVQTELEAIINEPKREAFAMMFLVLCNI 257
Query: 308 PVLILV 313
P+L ++
Sbjct: 258 PLLYVL 263
>gi|83648785|ref|YP_437220.1| type II secretory pathway subunit PulF [Hahella chejuensis KCTC
2396]
gi|83636828|gb|ABC32795.1| Type II secretory pathway, component PulF [Hahella chejuensis KCTC
2396]
Length = 409
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 10/163 (6%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+W+ L R+ + +GI I +A+R +AE ++ L+E +
Sbjct: 53 LWLKKLPIFRKKVTLDELVILCRQMHALSRAGIPIIRAIRGLAESTRSET--LAEVLDDV 110
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
L N A R ++I + +S R L ER
Sbjct: 111 ARRLEGGVNLATAM-----RAHPRTFNELFVSMILVGENTGQLEESFRQLGENIELERDT 165
Query: 286 EAEK-KAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
+A + V + I L V VI PA +
Sbjct: 166 RKRVGQAVRYPIMVVVAITIALLVVNFFVI--PAFAGVFAKFG 206
Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 8/133 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + +G+ + AL VAE + + + IA++ R
Sbjct: 273 LSRFSRNFSMMLAAGLPVTSALTLVAEAVDNKY------VGSAIADMRNGIERGDTLVRT 326
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
T M ++ S+ L + + E ++ A S+ P L V M
Sbjct: 327 ARATNM--FSPLVMQMLAVGEETGSVDSLLVEVANFYDEEIEYSLKRLAESIEPILLVVM 384
Query: 303 IIFFLPVLILVII 315
+ L + + V +
Sbjct: 385 GVMVLILALGVFL 397
>gi|329939413|ref|ZP_08288749.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
gi|329301642|gb|EGG45536.1| type II secretion system F protein [Streptomyces griseoaurantiacus
M045]
Length = 282
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
P+ E + AE+ A+ + + L ++ G + L
Sbjct: 169 GPVGERLATGAAEVRLGGEPAAAWRRLAE---LPGAAPLARLLERAGDSGAPAAVPVARL 225
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
++ R++R A +A G +T+P+ +FFLP ++V + P ++
Sbjct: 226 AADARADRGRAATARARRAGVLITLPLGLFFLPAFLVVGVLPVVI 270
>gi|145596965|ref|YP_001161262.1| type II secretion system protein [Salinispora tropica CNB-440]
gi|145306302|gb|ABP56884.1| type II secretion system protein [Salinispora tropica CNB-440]
Length = 300
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 4/185 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ + L + +L+ P ++ ++R A + L
Sbjct: 64 LLAGAVFAGALGFLLTGLPVVGLLVAVAVPGTPWLFSVGRAEQRAIGRIEAVGEWTRRLK 123
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+G + A+ + + EE+ L A L + A F +
Sbjct: 124 DISATGQGLQAAITGT---VATAPEEIQEEVRLLAARLQAGWLARPALLAFADEIADPVC 180
Query: 252 RNATQALIQSD-RYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
ALI G +GD L + S +E E +A P+ V + +
Sbjct: 181 DQVVAALILHLTDRGERLGDVLGSIASAASAEVATRREIEAKRTQPRFAVRFLTGMTLAV 240
Query: 311 ILVII 315
+ +
Sbjct: 241 LAYGL 245
>gi|255102462|ref|ZP_05331439.1| putative type IV pilus-assembly protein [Clostridium difficile
QCD-63q42]
Length = 361
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + SGI I +A+ A + + + E + ++ + + +
Sbjct: 231 FSRALSVLISSGIQIVEAIDMSASVVD--NEFIYERLKISNNYIKKGNSIGKSLNLAN-- 286
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ + + SL V+ +E + E+ + P + + +
Sbjct: 287 ----IFPKLFISMANTGEESGKLDKSLNVINKFYENELNNKIEQIMKFIEP-MLIVFMGL 341
Query: 306 FLPVLILVIIGPAI 319
+ IL ++ P
Sbjct: 342 IIGTFILAMVVPMF 355
>gi|78223072|ref|YP_384819.1| type II secretion system protein [Geobacter metallireducens GS-15]
gi|78194327|gb|ABB32094.1| type II secretion system protein [Geobacter metallireducens GS-15]
Length = 402
Score = 38.2 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 53/159 (33%), Gaps = 8/159 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + + + LL+ +++G+ I QAL + E L++ +
Sbjct: 46 PLQFLWERGGRNRRVDNKTLLTLNQELLVLIKAGLPIIQALDTILERFDR--GQLADILK 103
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
+ A E + A +++ + ++R ++ +
Sbjct: 104 EVRENVKGGMALSDALEKYPKAFPH-----LYVASVRAGERTGDLPLTIRRYIAFLKRVE 158
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ +A + P + V + +LV + P +
Sbjct: 159 EVRKRFVSALVYPSILV-TVATIAIAFLLVYVVPTFSQV 196
>gi|94984864|ref|YP_604228.1| type II secretion system protein [Deinococcus geothermalis DSM
11300]
gi|94555145|gb|ABF45059.1| type II secretion system protein [Deinococcus geothermalis DSM
11300]
Length = 406
Score = 38.2 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 16/145 (11%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ + QAL + I ++ + ++ A
Sbjct: 71 FSKQLATLINAGVPLVQALAILQRQIENKT--FQNIIKSIRTDVESGTPLSEALVKHPK- 127
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L+++ ++ L + + E + + K+A LT P+++
Sbjct: 128 ----VFNRLYINLVRAGETSGTLDSILERIAAFQEKELGLRGKLKSA-----LTYPVVVL 178
Query: 306 FLPV----LILVIIGPAILSIIDTM 326
+ +L I P I+ +
Sbjct: 179 VFAIGITYFLLTTIVPQFAGILAQL 203
>gi|325296998|ref|NP_001191511.1| G-protein-coupled 5-hydroxytryptamine receptor 2 [Aplysia
californica]
gi|21309892|gb|AAM46088.1|AF372526_1 G-protein-coupled 5-hydroxytryptamine receptor 2 [Aplysia
californica]
Length = 567
Score = 38.2 bits (87), Expect = 1.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 278 ETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
R + ++ E+KAA +T +I +LP I+ +IGP +
Sbjct: 474 RAREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPFV 515
>gi|282850373|ref|ZP_06259752.1| type II secretion system F domain protein [Veillonella parvula ATCC
17745]
gi|282579866|gb|EFB85270.1| type II secretion system F domain protein [Veillonella parvula ATCC
17745]
Length = 335
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 182 AWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN 241
D L + +ESG+ + +AL+ + + G + A
Sbjct: 1 MVVDVTYQLGLLIESGVPLRRALQLLCQGKRG------LLYTALYESIERGQTLSQAL-- 52
Query: 242 FYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVP 301
+ + AL++S ++G+SL+ + ER ++ + +A + L +
Sbjct: 53 -----RSEGCSPIALALLESGEAAGTLGESLQYISRHYDWERQLKQKVISA-ISYPLFLL 106
Query: 302 MIIFFLPVLILVIIGPAILSIIDTM 326
+++ ++ ++ I P+ ++ TM
Sbjct: 107 LMMNIFFLVTILFIIPSFENVFTTM 131
>gi|168214417|ref|ZP_02640042.1| putative pilus biogenesis protein [Clostridium perfringens CPE str.
F4969]
gi|170714108|gb|EDT26290.1| putative pilus biogenesis protein [Clostridium perfringens CPE str.
F4969]
Length = 339
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+ I ++L + + + E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKK--YKESLKRIEKKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ N + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYVTYILPQFVDMYE 141
>gi|149029663|gb|EDL84834.1| v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian),
isoform CRA_a [Rattus norvegicus]
Length = 1339
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGEL--EKRMKSVAVEREILRKQQITSLQK 65
L L +A+T +++ +I + ++ M+ E + +
Sbjct: 636 LMSKPHLVIAVTVGLAVILMILGGSFLYWRGRRIQNKRAMRRYLERGESIEPLDPSEKAN 695
Query: 66 DSASSRLRTRDSKSLRNFVK 85
+ + + + L+
Sbjct: 696 KVLARIFKETELRKLKVLGS 715
>gi|17432904|ref|NP_058914.2| receptor tyrosine-protein kinase erbB-3 precursor [Rattus
norvegicus]
gi|21431758|sp|Q62799|ERBB3_RAT RecName: Full=Receptor tyrosine-protein kinase erbB-3; AltName:
Full=Proto-oncogene-like protein c-ErbB-3; Flags:
Precursor
gi|17352449|gb|AAC28498.2| ErbB3/Her3 precursor [Rattus norvegicus]
Length = 1339
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 8 LFDATELAVAITTAVSIFSLIYAVVIPSLGSGEL--EKRMKSVAVEREILRKQQITSLQK 65
L L +A+T +++ +I + ++ M+ E + +
Sbjct: 636 LMSKPHLVIAVTVGLAVILMILGGSFLYWRGRRIQNKRAMRRYLERGESIEPLDPSEKAN 695
Query: 66 DSASSRLRTRDSKSLRNFVK 85
+ + + + L+
Sbjct: 696 KVLARIFKETELRKLKVLGS 715
>gi|318060836|ref|ZP_07979559.1| type II secretion system F protein [Streptomyces sp. SA3_actG]
Length = 305
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 4/114 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LL V +G +AL L +A F + A
Sbjct: 131 LCGLLAGEVRAGSGPAEALAHAVN----ACGELGPARADILAAARFGGDVPAALRQAARV 186
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + G + L L ++R A+ A G + T
Sbjct: 187 PGAEGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARAT 240
>gi|262184094|ref|ZP_06043515.1| hypothetical protein CaurA7_08891 [Corynebacterium aurimucosum ATCC
700975]
Length = 248
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 12/188 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L +++ + + V ++ + A + + ++ ++ +
Sbjct: 28 LAPAAVFLGVGCCVFFGRPTVVVAVGCIVACALWFANDLAAARRERRGAEALASYFGS-- 85
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ + +G + ALRR + + + L + + + VA
Sbjct: 86 --IAAELRAGSTTASALRRGTDALPDFTPESLRTALSTAAGLAAQGGSPAVALTA----- 138
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V+ L S R+G ++ + + S+ + R E A+ GP+ T ++
Sbjct: 139 --PEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILACL 196
Query: 307 LPVLILVI 314
IL+
Sbjct: 197 PLAGILMG 204
>gi|238754449|ref|ZP_04615804.1| Type II secretion system protein [Yersinia ruckeri ATCC 29473]
gi|238707278|gb|EEP99640.1| Type II secretion system protein [Yersinia ruckeri ATCC 29473]
Length = 339
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 22/205 (10%), Positives = 60/205 (29%), Gaps = 19/205 (9%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK------ 180
L + ++ L+ Y I+ + ++R
Sbjct: 140 LPGLTLGLLYLSGVLVSYGVYFITALTIIFLTYSYKIRKKLHWQQREQRFLLRLPLIAPL 199
Query: 181 ---RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
L + +G+++D+ L+ A + + P + + ++
Sbjct: 200 IQGHCLSQIFRTLSVTQNAGLTLDRGLQAAA--MSVNNWPYKKAINHIYQLINQGVPLNE 257
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A + + L++ S+ L L + + + A+ L P
Sbjct: 258 ALSHQSL------FPPLCRQLVRIGEESGSLDMMLEKLANWQQQQTEELADNLTQILEPT 311
Query: 298 LTVPMIIFFLPVLILVIIGPAILSI 322
L +I+ + +++ + I +
Sbjct: 312 LM--LIVGIIIGTLVIAMYLPIFQL 334
>gi|319789966|ref|YP_004151599.1| Type II secretion system F domain protein [Thermovibrio
ammonificans HB-1]
gi|317114468|gb|ADU96958.1| Type II secretion system F domain protein [Thermovibrio
ammonificans HB-1]
Length = 404
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 8/145 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +GI + QALR + E + + L + + + + A +
Sbjct: 67 LLIFTRQLHAMIHAGIPLVQALRIIKEQLP--NRRLRQIVEEIASFIEEGGKFSTAISRY 124
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + +++++ ++ ++L+ L + + K+A P +
Sbjct: 125 R-----DIFGDLYISMVRAAEEAGTLEETLKRLADYLEKVEKLRGKVKSALFYPVFVFIV 179
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+ + ILV + P + M
Sbjct: 180 AMLIV-TGILVFVIPTFEQLYADMG 203
>gi|291279501|ref|YP_003496336.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans
SSM1]
gi|290754203|dbj|BAI80580.1| type IV pilus assembly protein PilC [Deferribacter desulfuricans
SSM1]
Length = 402
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
A L + +G+ I +AL ++ + + L ++ + A E N
Sbjct: 65 ATRQLATMINAGLPIVRALDIISAQTPKKK--FRKIFLEIKEDIEQGQSFSRALEKHKN- 121
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ ++ + G + D L L ++ + K+A +
Sbjct: 122 ----IFGDLYINMVAAGEAGGLLDDILDRLSQYMEKAISLKRKVKSAMM 166
>gi|227877250|ref|ZP_03995323.1| competence protein [Lactobacillus crispatus JV-V01]
gi|256848888|ref|ZP_05554322.1| competence protein [Lactobacillus crispatus MV-1A-US]
gi|262045780|ref|ZP_06018744.1| competence protein [Lactobacillus crispatus MV-3A-US]
gi|312977666|ref|ZP_07789413.1| competence protein [Lactobacillus crispatus CTV-05]
gi|227863106|gb|EEJ70552.1| competence protein [Lactobacillus crispatus JV-V01]
gi|256714427|gb|EEU29414.1| competence protein [Lactobacillus crispatus MV-1A-US]
gi|260573739|gb|EEX30295.1| competence protein [Lactobacillus crispatus MV-3A-US]
gi|310895405|gb|EFQ44472.1| competence protein [Lactobacillus crispatus CTV-05]
Length = 333
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L +++G S+ ++ E + + M + + +
Sbjct: 20 FLDYLKHSLDNGFSLLNSI----ELMPALWPKRCQLMERMASRMKEGASFSTELLKLGFS 75
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + + G ++ + L+ L + R ++ + +A L+ P+++
Sbjct: 76 ------KTTVTQVNLALQQG-NLVECLQHLATLNRLKQEQMKKLRAE-----LSYPLVLA 123
Query: 306 FLPVLILVII 315
+ V++LV +
Sbjct: 124 IMMVILLVFM 133
>gi|153930642|ref|YP_001393316.1| type II secretion system protein F [Yersinia pseudotuberculosis IP
31758]
gi|152958183|gb|ABS45645.1| bacterial type II secretion system protein F domain [Yersinia
pseudotuberculosis IP 31758]
Length = 359
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 15/198 (7%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS-----SIKRAWPDALD 188
+ ++Y + + V L P + + ++ + L
Sbjct: 171 LYLLSEYTVDYGLYVVIFLVSLTTASIVSLPYLKGNIRIKLDRIPPYSLYRMLHGSAFLL 230
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ + + +GI + +ALR ++ G S L + + + + N A E
Sbjct: 231 NISVMMSAGIQMQEALRIISN---GSSPWLMQRVNSALFGIGLGKNLGEALEISGYDFPD 287
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLP 308
L + ++ + L +E E + + A + L++ +I+ L
Sbjct: 288 RKAIPFISILADT----GNLDEVLPDYANEWLEESVRNIDTIANWM---LSIGLILIGLV 340
Query: 309 VLILVIIGPAILSIIDTM 326
+ +++I I + + TM
Sbjct: 341 IALIMIGTNEISNYMQTM 358
>gi|85860074|ref|YP_462276.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
gi|85723165|gb|ABC78108.1| general secretion pathway protein F [Syntrophus aciditrophicus SB]
Length = 409
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 7/133 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ + QAL + Q L + ++ + +F
Sbjct: 71 LSVTTRHLATLLSAGMPLVQALNILVTQTDNQ--ALQSILSQIRKDVVEGISLSAGMSSF 128
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +++++ ++ L L + ++ + KAA P L
Sbjct: 129 PR-----VFSSFYISMVRAGEASGTLPVVLERLADYSEKQQEFARKIKAALAYPILMFLF 183
Query: 303 IIFFLPVLILVII 315
L LI +I
Sbjct: 184 GALILFFLITFVI 196
>gi|182413437|ref|YP_001818503.1| type II secretion system protein [Opitutus terrae PB90-1]
gi|177840651|gb|ACB74903.1| type II secretion system protein [Opitutus terrae PB90-1]
Length = 417
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 7/137 (5%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+++R++ + L+ L SG+S +A+R ++ I L LS
Sbjct: 66 RLERRRNVARAQRLPFLESLHDLTTSGMSAGEAVRLLSTRIKE--PALRALCSALWERLS 123
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
A +F AT LIQ+ S+ ++L L++ +R + +
Sbjct: 124 EGAPLSRAMSDFP-----AVFDAATVNLIQAGEATGSLNETLDRLITHLNEQRELRRQLV 178
Query: 291 AASLGPKLTVPMIIFFL 307
AA P V + +
Sbjct: 179 AALAYPIFMVVVATGVI 195
>gi|58337050|ref|YP_193635.1| competence protein [Lactobacillus acidophilus NCFM]
gi|227903613|ref|ZP_04021418.1| competence protein [Lactobacillus acidophilus ATCC 4796]
gi|58254367|gb|AAV42604.1| competence protein [Lactobacillus acidophilus NCFM]
gi|227868500|gb|EEJ75921.1| competence protein [Lactobacillus acidophilus ATCC 4796]
Length = 334
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S+ ++ E + M + +
Sbjct: 21 FLDYLKNSLNNGFSLSNSI----ELMPVLWPKQRVLMGKLARRMKNGASLSEELIKLGFS 76
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R + S + G ++ + L L +R ++ + +A L+ P+++
Sbjct: 77 ------RTMVTQVNLSLQQG-NLTECLEQLAILSRLKQEQIKKLRAE-----LSYPLVLA 124
Query: 306 FLPVLILVIIGPAILSIIDT 325
+ +++L+ + + +S+
Sbjct: 125 IMMIVLLMFMQ-SFISMQFN 143
>gi|226949206|ref|YP_002804297.1| bacterial type II secretion system protein F [Clostridium botulinum
A2 str. Kyoto]
gi|226841646|gb|ACO84312.1| bacterial type II secretion system protein F [Clostridium botulinum
A2 str. Kyoto]
Length = 396
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 67/201 (33%), Gaps = 16/201 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSSIKRAW 183
++ I +F + + V Y + + ++ Q
Sbjct: 204 LGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKIKYAVDNLKIKTPILGQIYKNIFI 263
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + + + ++SGI I+++L+ + E + E + + + +
Sbjct: 264 CNFSNSMNLMIKSGIPINKSLKLLEEV--TDNYIFKENIKNLNKNIKDGKSISTSLNKCG 321
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + + G + +S + + E+K + KL P I
Sbjct: 322 FSNKI-----LLSMVHIGEESG-RLEESFYSVYKIL----KKDLEEK-LKVSVKLIEPTI 370
Query: 304 IFFLPVLILVIIGPAILSIID 324
I F+ ++I +I + +++
Sbjct: 371 IIFMSLIICIIFIYVFIPMMN 391
>gi|119472644|ref|ZP_01614635.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium
TW-7]
gi|119444848|gb|EAW26149.1| type IV pilus biogenesis protein PilC [Alteromonadales bacterium
TW-7]
Length = 409
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 10/143 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ + +G+ + QA+ + G + + + M E+ A R
Sbjct: 75 VTRQIATMLMAGVPLIQAIEMIGT--GSTNKSVGKLMETIGDEVKAGQPLSQAL-----R 127
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK-LTVPMII 304
+ L+ S ++ + E+ + K ++V +I
Sbjct: 128 KHPRYFDDLYCDLVASGEQSGALDKIFDRVA--LYKEKSEALKSKIKKAMFYPISVLVIA 185
Query: 305 FFLPVLILVIIGPAILSIIDTMK 327
+ ++L+ + P I
Sbjct: 186 GIVTSILLIFVVPQFQDIFSGFG 208
>gi|322434575|ref|YP_004216787.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
gi|321162302|gb|ADW68007.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX9]
Length = 399
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 9/147 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ L +++G+ I +L +A + ++ + + AFE
Sbjct: 62 FLVFNQQFLTLIKAGLPILGSLDLLARRQKVLN--FRAQLEDVATRVKTGESISSAFEAQ 119
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + ++ + L+ + R + KA+ + P L + M
Sbjct: 120 G------GFPIVYTTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLIYPSLLIVM 173
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKDH 329
+I + ++ + P + D + H
Sbjct: 174 VIGLF-IFLITFVVPRFAQLYDQLNTH 199
>gi|254785262|ref|YP_003072690.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901]
gi|237684077|gb|ACR11341.1| MSHA biogenesis protein, MshG [Teredinibacter turnerae T7901]
Length = 409
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 10/146 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ ++GI + + +R +A + E + +L + A
Sbjct: 69 LVMFCRQMYTVTKAGIPLTRGIRGLAASVR--HEHFREVLNDVAEKLETGMSLSRAM--- 123
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVP 301
R + ++I + + R + R E + K A + V
Sbjct: 124 --RQHPKVFDSLFVSMINVGESSGKLDEIFRQIGFYLERDEETRKRVKSAMRYPSFVVVA 181
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMK 327
++I F V+I + + P +
Sbjct: 182 LVIAF--VVINIYVIPPFAKMFSKFG 205
>gi|307327612|ref|ZP_07606797.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
gi|306886724|gb|EFN17725.1| Type II secretion system F domain protein [Streptomyces
violaceusniger Tu 4113]
Length = 305
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 4/167 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ G LL + + + G P V + + A L+ L
Sbjct: 64 LVTTAGTVTLLVWAYTGWPVHGLFAGAAVLGLPYVLYPGSAAQARIERLEALGQWLNHLA 123
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+GIS+ Q +R A+ + + L + AF F +
Sbjct: 124 GVHTAGISLTQTIRASAKAAPAPI---AANVQALAERLRAGMDAHAAFALFADELADGVS 180
Query: 252 RNATQALI-QSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+ + G + D+L L + + +A +
Sbjct: 181 DHVVLLFQSHAVYKGPGLADALEALAITIHQQAADARDVEADRAKVR 227
>gi|299139220|ref|ZP_07032396.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX8]
gi|298598900|gb|EFI55062.1| Type II secretion system F domain protein [Acidobacterium sp.
MP5ACTX8]
Length = 396
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 18/153 (11%), Positives = 51/153 (33%), Gaps = 9/153 (5%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
++ + L + +G+ I +L +A+ +S ++ + + +
Sbjct: 53 KKKVKLDIFLVFNQQFLTLIRAGLPILSSLDLLAKRQKEES--FQAQLEDVTSRIKTGES 110
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
AFE + + ++ + L+ + R + KA+ +
Sbjct: 111 ISSAFEAQG------SFPLVYTTTLLAGERSGNLEEVLQRFLDFQRVSLTFRKKLKASLI 164
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
P + M+I + ++ + P + D +
Sbjct: 165 YPAFLIVMVIGLF-IFLITFVVPRFAQLYDQLG 196
>gi|262192440|ref|ZP_06050592.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
gi|262031704|gb|EEY50290.1| general secretion pathway protein F [Vibrio cholerae CT 5369-93]
Length = 393
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 49/149 (32%), Gaps = 9/149 (6%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + + L L ESG+ +DQ + + E+ + + L +
Sbjct: 41 MLAEQRSSGVKQLSREVLITTLRELATLRESGMPLDQCINSLLENSADKQMVL--VLKRL 98
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+++ + A Q D ++++ +G++L + E +
Sbjct: 99 HSDIESGSSLSEAIAA-----QPDSFPYYVSSMLRLGEASGQLGNALFSISERIEREEKL 153
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+E K S +++ + + +
Sbjct: 154 VSEVK--SALTYPAFLLVVCVATIFFMFL 180
Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 48/142 (33%), Gaps = 9/142 (6%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R + ++SG+ + +++ I L +++ + ++
Sbjct: 251 RMLMDSWNIVQFSSSMQKLLQSGVELVESVEITLNSISDVR--LRKKLRHVVVKVREGKG 308
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ + LI + G S+ R + + RL + K+ ++
Sbjct: 309 LAESLD------DYQTFPPMVLRLISTGEAGASLVPCFREI-NNLYERRLSKGLKQILTI 361
Query: 295 GPKLTVPMIIFFLPVLILVIIG 316
L + ++ + +++V+I
Sbjct: 362 LEPLVIVIMGGIVGSIMIVLIS 383
>gi|168701870|ref|ZP_02734147.1| type IV fimbrial assembly protein PilC [Gemmata obscuriglobus UQM
2246]
Length = 414
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 46/141 (32%), Gaps = 16/141 (11%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
++ ++G+ + ++LR + + L M+ + ++ A
Sbjct: 73 QKQLVTFTRQFSTLQDAGLPVLRSLRILERQMPPS--ALKNSMIDVVDDVESGSALSEAL 130
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
++++ G ++ L+ L +KA SL K+
Sbjct: 131 SRHPK-----AFSKLYVNMVRAGEAGGALEIILQRLADFL---------EKAQSLKSKII 176
Query: 300 VPMIIFFLPVLILVIIGPAIL 320
M+ + + + V I I+
Sbjct: 177 GAMVYPAVVIFVAVAILTFIM 197
>gi|145634703|ref|ZP_01790412.1| putative type IV pilin secretion protein [Haemophilus influenzae
PittAA]
gi|145268248|gb|EDK08243.1| putative type IV pilin secretion protein [Haemophilus influenzae
PittAA]
Length = 406
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 29/230 (12%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + I + + L + L A+ + + F +
Sbjct: 184 VPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQTWFHQK 243
Query: 173 QKRQSSIK---------RAWPDALDLLLICVESGISIDQALRRVAEDIGGQ--------S 215
+ + SI + L I +++G+ ++QAL
Sbjct: 244 KNQLISITPIFGTIQKLSRLVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVND 303
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ L +E+ + +S + D Q ++Q + L +
Sbjct: 304 IVLDKEVRSILQWVSQGYAFSDS-------VSSDLFPMEVQQMLQIGEQSGKLALMLEHI 356
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + + + P+++ + LI +I+ L I +
Sbjct: 357 ADNYQEKLNHQIDLLSQ-----MLEPLMMVIIGSLIGIIMMGMYLPIFNM 401
>gi|227497416|ref|ZP_03927648.1| possible type II secretion system protein [Actinomyces urogenitalis
DSM 15434]
gi|226833092|gb|EEH65475.1| possible type II secretion system protein [Actinomyces urogenitalis
DSM 15434]
Length = 218
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 5/151 (3%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+ + + V+ R+ +WP+A+DLL + G+ + +AL +AE L
Sbjct: 28 LALRHGVEVRRRRQVESWPEAVDLLGAALSQGVGLPEALSGLAE---AGPPALRPAFRAF 84
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRSERL 284
+ A + + + + GT+ + +L L + R ER
Sbjct: 85 ALSYTLSGILDEALDRLDGELDDWVGEHLMALVRLAQETGTAGLATALHELSATLRVERA 144
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+SL ++ F+P L++ +
Sbjct: 145 SR-RLMVSSLAWGARGSCLLAFVPWLVIGAL 174
>gi|168215471|ref|ZP_02641096.1| putative pilus biogenesis protein [Clostridium perfringens NCTC
8239]
gi|182382167|gb|EDT79646.1| putative pilus biogenesis protein [Clostridium perfringens NCTC
8239]
Length = 339
Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+ I ++L + + + E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKK--YKESLKRIEKKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ N + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPVS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYVTYILPQFVDMYE 141
>gi|160895357|ref|ZP_02076128.1| hypothetical protein CLOL250_02916 [Clostridium sp. L2-50]
gi|156863050|gb|EDO56481.1| hypothetical protein CLOL250_02916 [Clostridium sp. L2-50]
Length = 402
Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 13/147 (8%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
IK A + + SGIS+ A+ +VA+ + + + + ++ +++
Sbjct: 262 IKSACSRFARTMSTLMASGISMIDAVEQVAKMMD--NKIIRDGLMDAKTQVAKGIPLSKP 319
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
++ + + A+ + I + L + E K A++
Sbjct: 320 LKDM------EVLPPMLSAMTKIGEETGDIEEMLSKVADYYDEEVDAATNKLTAAME--- 370
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDT 325
P+I+ L ++ +I+ I+
Sbjct: 371 --PLIMVILACIVGMIVAAVYGPIMSM 395
Score = 36.7 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRV 274
S L A + A E ++ + ++ A G ++ D+LRV
Sbjct: 60 SRDLGVFCKQFSAVIKAGVTIISALELMGDQIENPTLKRAVMDAKTYVEKGGTLADALRV 119
Query: 275 LVSET 279
Sbjct: 120 NSDVF 124
>gi|330958320|gb|EGH58580.1| general secretion pathway protein F [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 403
Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 11/146 (7%), Positives = 43/146 (29%), Gaps = 11/146 (7%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + +G+ +D+AL E + + + + ++ A
Sbjct: 66 LASVTRQMASLLGAGLPLDEALSATVEQAERKH--IIQTLGEVRTDVRSGMRLAEALAA- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + +ALI + + + L ++ + L + +
Sbjct: 123 ----RPRDFPDIYRALIAAGEESGDLAQVMERLADYIEERNMLRGKI----LTAFIYPCV 174
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ +++ ++ + ++
Sbjct: 175 VGLVSIAIVIFLLSYVVPQVVSAFSQ 200
>gi|325116702|emb|CBZ52255.1| hypothetical protein NCLIV_020420 [Neospora caninum Liverpool]
Length = 2292
Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 34/251 (13%), Positives = 71/251 (28%), Gaps = 15/251 (5%)
Query: 12 TELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSR 71
T L +AVSIF++ V I S + RM E+ ++ K
Sbjct: 1398 TVLFFIFISAVSIFAVKMCVGIIVDASRRKKARM-------EMEGSLLSATVHKWIEIQE 1450
Query: 72 LRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILG 131
L + + + +L A SE+ + + + ++ + G
Sbjct: 1451 LLFNSPLQHGDTMPDFANADSKKVAFLRKRLA-AIVTSEWFRTAVALHTCICCLLLFLYG 1509
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
+ + A+ ++ F + I + R R D +D ++
Sbjct: 1510 PWYDLTLGPYSQARRVYLHIAIAILSIFFF----LEIGVKIFVRGRLFFRDTLDIMDAII 1565
Query: 192 ICVESGISIDQALRRVAEDIGGQS---VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
C+ GI + + + + LS + L + R
Sbjct: 1566 CCLLIGIFVVDIVWWTLWQMPPEPLTFWLLSFRLFRVARFLYRQMSFFQTLFTTICRVMK 1625
Query: 249 DCVRNATQALI 259
+ +
Sbjct: 1626 SFLNVLALLCL 1636
>gi|148263980|ref|YP_001230686.1| type II secretion system protein [Geobacter uraniireducens Rf4]
gi|146397480|gb|ABQ26113.1| type II secretion system protein [Geobacter uraniireducens Rf4]
Length = 402
Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 26/198 (13%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS-------------IKRAWP 184
+ A + + + W + + IK A
Sbjct: 210 MLIAFTGILKKFFWAGVGLFILAIFIFRRWAETERGRYRVDALLIKVPFIGQLLIKYAVS 269
Query: 185 DALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN 244
+ L + SGI I ++L+ + ++ L ++L + + A E
Sbjct: 270 SFMRTLATVLGSGIPIIESLKMSVGTL--NNMVLERKLLEAVVRVEEGVQLSTALE---- 323
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
+ ++ S+ + L + E S+ P I+
Sbjct: 324 --GAKIMPPLALRMLGVGETTGSLEEMLGDISDYFEEEIERHLNVLTTSIE-----PAIM 376
Query: 305 FFLPVLILVIIGPAILSI 322
+ V+I VII L I
Sbjct: 377 IIMGVVIGVIIVTMYLPI 394
Score = 35.6 bits (80), Expect = 9.8, Method: Composition-based stats.
Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 8/159 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ R+ + LL+ +++G+ I QAL + E + L E +
Sbjct: 46 PLQFLLESGITRRKVDNKDLLTFNQELLVLIKAGLPIIQALDTILERVE--KGKLGEILS 103
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ VAFE A IQ+ + ++R ++ +
Sbjct: 104 EIREDVKGGAALSVAFEKHPKVFPH-----LYIASIQAGERTGDLPQTIRRYIAFLKKAE 158
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ +A + P + + + F L+LV + P +
Sbjct: 159 GFRKKVLSALVYPAIVI-TVAFVAVTLLLVYVVPTFSQV 196
>gi|302349264|ref|YP_003816902.1| Archaeal flagellar like-protein J [Acidilobus saccharovorans
345-15]
gi|302329676|gb|ADL19871.1| Archaeal flagellar like-protein J [Acidilobus saccharovorans
345-15]
Length = 541
Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 68/188 (36%), Gaps = 6/188 (3%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+LG+I + + + ++ P+ ++ N ++ + +P
Sbjct: 257 GFVLGVIISYLVLSHGVNYVTVGISFIVFGLL---FVPAGYVINNMENLIDDYDKFFPVM 313
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ L I + + QA++ +++ + L + + A L+ ++ +A F +T
Sbjct: 314 IRSLGIYLSQVPDLRQAVKELSKI---ELGRLRKLLENLQASLAMGVDKGIAMAKFAVQT 370
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ + + Q +G + ++ L + K + T+ ++
Sbjct: 371 GSENIYRSLQVFTDVMDHGGDLSEAGVALSDHMNLLLTLRERKLQVTGNFLSTLILMHAS 430
Query: 307 LPVLILVI 314
+ +++ +
Sbjct: 431 VIAIMVFM 438
>gi|75992383|dbj|BAE45049.1| TadB-like protein [Terrabacter sp. DBF63]
Length = 288
Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 1/112 (0%)
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-Y 264
+ + + + ++ +A L + + +F +LIQ+ +
Sbjct: 124 AIVQTLPSTPTAIRPQVERLVARLRGNAPLEASLYSFAEELDSQTGDYIAASLIQAAQFS 183
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIG 316
G + +L + +E E E + P I ++V++
Sbjct: 184 GAGLSAALEAIAAEVAVEVRARREIEVDRAKPLTESRWISIITIASVIVLVF 235
>gi|260771888|ref|ZP_05880806.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP
69.14]
gi|260613180|gb|EEX38381.1| type 4 fimbrial assembly protein PilC [Vibrio metschnikovii CIP
69.14]
Length = 408
Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 51/148 (34%), Gaps = 9/148 (6%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
+S + + + + L + +G+ I QAL+ VA+ Q + +
Sbjct: 55 LSLITRLTHRATNKEITLLTRQLSTMLATGVPIVQALKLVADS--HQKAEMKSIITQISK 112
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
++ A RT L+Q+ ++ + L + + A
Sbjct: 113 GVAAGTPISKAM-----RTASSLFDPLYVDLVQTGEQSGNLAEVFERLATYREKTEQLRA 167
Query: 288 E-KKAASLGPK-LTVPMIIFFLPVLILV 313
+ KA + V + + +L + +++
Sbjct: 168 KVIKALIYPAMVMLVALGVSYLMLTMII 195
>gi|37522234|ref|NP_925611.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421]
gi|35213234|dbj|BAC90606.1| pilin biogenesis protein [Gloeobacter violaceus PCC 7421]
Length = 410
Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 15/133 (11%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L +G+S+ ++L + E + L + + ++ + + F
Sbjct: 74 FARQLAAMTSAGVSLVRSLTVLEE--QSTNRKLKKVLTQVSFDVQQGSSLAASMRKFPQ- 130
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL--------GPK 297
N A+IQ+ G + L L + ++ + ++A
Sbjct: 131 ----AFDNLFVAMIQAGEAGGLLDQVLDRLSKLLEDQDRLQRQVRSALAYPVTVLILAVI 186
Query: 298 LTVPMIIFFLPVL 310
+ + M+ F LPV
Sbjct: 187 IFLAMVTFILPVF 199
>gi|295692601|ref|YP_003601211.1| competence protein [Lactobacillus crispatus ST1]
gi|295030707|emb|CBL50186.1| Competence protein [Lactobacillus crispatus ST1]
Length = 333
Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L +++G S+ ++ E + + M + + +
Sbjct: 20 FLDYLKHSLDNGFSLLNSI----ELMPALWPKRRQLMERMASRMKEGASFSTELLKLGFS 75
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + + GT + + L+ L + R ++ + +A L+ P+++
Sbjct: 76 ------KTTVTQVNLALQQGT-LVECLQHLATLNRLKQEQMKKLRAE-----LSYPLVLA 123
Query: 306 FLPVLILVII 315
+ V++LV +
Sbjct: 124 IMMVILLVFM 133
>gi|225024579|ref|ZP_03713771.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC
23834]
gi|224942730|gb|EEG23939.1| hypothetical protein EIKCOROL_01456 [Eikenella corrodens ATCC
23834]
Length = 411
Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 16/152 (10%)
Query: 168 ISNLVQKRQSSI-KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ + R+ I + L +++G+ + QA VA+ G + +++ ++
Sbjct: 57 LHKKKKVREKRITQGDITVFTRQLATMMKAGLPVMQAFDIVAK--GHSNASMTKLLMEVR 114
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
++ + AF R + L+ + G + L L ++
Sbjct: 115 NDIEQGTSMANAF-----RKHPKYFDDFYCNLVDAGEAGGVLESLLDKLAVYKEKTLAIK 169
Query: 287 AEKKAA--------SLGPKLTVPMIIFFLPVL 310
+ K+A + L + M++F LP
Sbjct: 170 KKIKSALTYPIAVVVVAIVLVIIMMMFVLPEF 201
>gi|320165365|gb|EFW42264.1| solute carrier family 22 member 15 [Capsaspora owczarzaki ATCC
30864]
Length = 709
Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 53/186 (28%), Gaps = 11/186 (5%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKR--MKSVAVEREILRKQQITS 62
D + + + A+ A + + + +R + + IL S
Sbjct: 196 IVDELNLSSVLKAVLVAATFAGWLVGAFFWGFIIDKYGRRPGLLASLAGVTILGAALSAS 255
Query: 63 LQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLV 122
+ S ++ + L + + + G S + ++
Sbjct: 256 QDFPTLISLRVLTGAQIGGTMLCSFTLLSEYIAPSKR------GIVSTLWQTAFGIGIML 309
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + I + + +L + +++ + F P LVQKR +
Sbjct: 310 MALGGYIAVQVLEASWHWVLA---IACIPSLLAFAVLYFVLPESPRYLLVQKRYDDLTDC 366
Query: 183 WPDALD 188
+D
Sbjct: 367 LQTVVD 372
>gi|145551406|ref|XP_001461380.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429214|emb|CAK94007.1| unnamed protein product [Paramecium tetraurelia]
Length = 2402
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 60/173 (34%), Gaps = 5/173 (2%)
Query: 20 TAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKS 79
++ S + + S + + + ++ + + + K +S+
Sbjct: 2056 AGFAVISALVEGYLYFSISDVIPEYVTALEHAVQFNESEIEITEYKLKSSALDTNGGQTI 2115
Query: 80 LRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLN----ILLVVRLVVPIIFLILGIIWI 135
R F +K + L E I+++L++AG + ++ + +L +F + I +
Sbjct: 2116 ERQFKEKRKSRIELSIEQIISRLQSAGQSRQAAIVNRILQFFMSQLFKFDLFGDVTFILV 2175
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
E F L + V F I + K+ I++ ++
Sbjct: 2176 LQNCNYNEL-FYLTIAITAATSGVHFLYFMYLILKRISKQNRQIQQLSSQYIN 2227
>gi|21226514|ref|NP_632436.1| flagellar assembly protein J [Methanosarcina mazei Go1]
gi|20904782|gb|AAM30108.1| flagella related protein FlaJ [Methanosarcina mazei Go1]
Length = 515
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 87/230 (37%), Gaps = 15/230 (6%)
Query: 87 LNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPF 146
L L I KL A +S I + R+++P+ L ++ + G K
Sbjct: 196 LALYIIYKAAPAEKKLHALSRKSREQERIKFLSRVLLPLGAFSLTVLILLGTRKEY---- 251
Query: 147 QLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICV-ESGISIDQALR 205
IL+G F P ++ ++ ++P + L +GI+I A+
Sbjct: 252 -------ILLGVPFFTLPIGVLAVADDRKIDERDSSFPAFIKTLGTLAGTTGITIRSAME 304
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ + G P EE+ LS ++ +E F T + + +++ + G
Sbjct: 305 NLDRETIGCLKPGVEELHK---GLSMGFKSRLCWEKFIGETGSELINRSSRIFNDAVELG 361
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ ++ + + + L+ +++ S G K + + L++ ++
Sbjct: 362 GDPAEIGNIVSASSLAIVLLRMKRQLVSSGFKGLALTLHAVMVGLLIFVM 411
>gi|295091373|emb|CBK77480.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine
kinase. [Clostridium cf. saccharolyticum K10]
Length = 347
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 33/99 (33%), Gaps = 1/99 (1%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ ++ + ++ V +FL+ +I + L + + F +
Sbjct: 1 MDKKGNVYLFCRMQAVTAALFLLSALILAVSFLSGLSEGRPVWLWTAGFAVLAAFGWINY 60
Query: 167 WISNLVQKRQ-SSIKRAWPDALDLLLICVESGISIDQAL 204
+R +++ + L +G++ +A+
Sbjct: 61 IWVIRPYRRMEKTMRLFLDGYITELSELQGAGMTPAEAM 99
>gi|310779619|ref|YP_003967952.1| Type II secretion system F domain protein [Ilyobacter polytropus
DSM 2926]
gi|309748942|gb|ADO83604.1| Type II secretion system F domain protein [Ilyobacter polytropus
DSM 2926]
Length = 400
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 34/262 (12%), Positives = 81/262 (30%), Gaps = 37/262 (14%)
Query: 90 KAILVDENIVNKLRAA-GFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQL 148
++ E I K+R A + S + +V L++ + +++ + +
Sbjct: 150 QSQEKAEEIKGKIRTAMIYPSIVLVLSFTIVFLLMSFVIPNFVVLFTDTGVPMPSLTLFV 209
Query: 149 ----------RVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWP------------DA 186
++ +G + F + ++ S+ P
Sbjct: 210 IGISKWFNKNWYWILLGVGILAFIGYKYQKTPKGKRNSHSLILRLPLFGKIFKKASVARF 269
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
L ++SG+ I A VA+ +G + E + ++ E
Sbjct: 270 SRTLETLLDSGVPILSAFDIVADTVGNIL--MGESIREVKDKIKSGHTIAKPLE------ 321
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
+ ++ + L L +ER +E + + PM+I
Sbjct: 322 ESGSFPPMVVNMVDVGEESGELVKMLSKLAD--FNERELEETIRDSLAA---FEPMMILI 376
Query: 307 LPVLILVIIGPAILSIIDTMKD 328
+ + + VI+ L + ++ D
Sbjct: 377 MALTVGVIVVAMYLPV-FSLSD 397
>gi|271962054|ref|YP_003336250.1| Flp pilus assembly protein TadB-like protein [Streptosporangium
roseum DSM 43021]
gi|270505229|gb|ACZ83507.1| Flp pilus assembly protein TadB-like protein [Streptosporangium
roseum DSM 43021]
Length = 234
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 3/141 (2%)
Query: 160 GFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLS 219
G + KR ++ + A + L + +G + +AL R +
Sbjct: 38 GSLYARFAGRSRPSKRTAAWRIASIELCQGLAAELAAGRTAGEALARAVSTVEFPDPV-- 95
Query: 220 EEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET 279
+ IA + A + S G + + +
Sbjct: 96 -ALRPLIAAARDGGDVPAALLAAAPEQGGEAFSRLAACWKVSVTAGAGLSVLVDRVAGSL 154
Query: 280 RSERLMEAEKKAASLGPKLTV 300
R + + A GP+ T
Sbjct: 155 REAQAHRQDVAAQLAGPRATA 175
>gi|224437100|ref|ZP_03658081.1| hypothetical protein HcinC1_03990 [Helicobacter cinaedi CCUG 18818]
Length = 368
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 25/210 (11%), Positives = 68/210 (32%), Gaps = 14/210 (6%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L L + L + I I I +F +++ + + + G+ +
Sbjct: 154 LPQFLEMFLSMQIELPIYTRILLFMQTFFIDFGLIFALCVLCAVALFGYAY-KNTLHFKA 212
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + L+ +++ + + + L+ + I+ L+
Sbjct: 213 KIHAYILHIP------LVGAIIKAHFYYQYSFSLYIQLKSATPMDLALALSKDISNLALK 266
Query: 233 PNRQVAFENFYNRTQMDC-------VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ A E+ N + + + ALI + ++ + L V
Sbjct: 267 AKFESALESVKNGKALSVSLKEQNALDDIALALINAGEQSGNLAEMLEVCAKHFEEIATE 326
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + + + P L++ M I L + + + +
Sbjct: 327 KTDMLISLIEPSLSLTMGILLLFLALGIFV 356
>gi|209922063|ref|YP_002296136.1| PilR protein [Escherichia coli SE11]
gi|209915241|dbj|BAG80314.1| PilR protein [Escherichia coli SE11]
Length = 365
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 16/194 (8%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD-- 185
LG ++ + Y V ++ G + + P+ + V+ I
Sbjct: 168 GALGFLYGLSV-FVDNYGAICSVLFAVITGLISWSLPNWKSPDSVRTFADKIMPWSIYQD 226
Query: 186 -----ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
L + +++ ++ +L + E S LS + I + + +A
Sbjct: 227 IQGATFLLNIAALLKAKMTTLNSLNILQEF---ASPWLSTRLDSIIYRVRQGDHLGLALR 283
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ N L G + + S+ L +K+A + + +
Sbjct: 284 QCGYQFPSREAANFLSLLQ-----GDGATELISNYGQRWLSQTLQRVKKRANVIRLIMLI 338
Query: 301 PMIIFFLPVLILVI 314
+++ + ++ ++
Sbjct: 339 FLVMSLMLLVFAIM 352
>gi|134298809|ref|YP_001112305.1| hypothetical protein Dred_0945 [Desulfotomaculum reducens MI-1]
gi|134051509|gb|ABO49480.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 261
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 24/208 (11%), Positives = 67/208 (32%), Gaps = 7/208 (3%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWIS 169
+++ ++ + + I + I +L F + + L+ +G+ P
Sbjct: 16 SWTVGKYPEIKTIKQFLIRIGLPLIISISFFVLFTMFFMTPLSGALMAVLGWHLPGWLRE 75
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ + + + +G+ Q L+ +A+ P + E A
Sbjct: 76 KNEYRKLKKHRDQAKNFITSAGGLYGAGLETPQVLKAIAQSF---PEPFASEFQSISARR 132
Query: 230 SF--LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL--RVLVSETRSERLM 285
+ ++ + ++ + + G + + L R +
Sbjct: 133 ELDPTTSVPKMLMELADKYNLPEMKAEAAVIAAASTAGGPAAAARGSKRLGKALRLRDEL 192
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILV 313
E+ A+ PK+ +I + V +L+
Sbjct: 193 IQERIQATYEPKIASIFVITIIGVGLLL 220
>gi|148241117|ref|YP_001226274.1| Type II secretory pathway, component PulF [Synechococcus sp.
RCC307]
gi|147849427|emb|CAK26921.1| Type II secretory pathway, component PulF [Synechococcus sp.
RCC307]
Length = 410
Score = 37.5 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+ V +G+ I ++L +AE + +++ + A +
Sbjct: 75 FASQMAALVSAGVPIVRSLEILAEQQKL--PMFKRALQRLSLDVNQGSSLGSALRRWPQ- 131
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ A++++ G + + L+ L ++ + + A LG +TV +I
Sbjct: 132 ----VFDALSVAMVEAGEAGGVLEEVLKRLAKLLEDNAKLQNQIRGA-LGYPVTVLVIAI 186
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ + + + + P I + +
Sbjct: 187 AVFLGMTIFLIPTFAGIFEDLG 208
>gi|90020993|ref|YP_526820.1| glyceraldehyde-3-phosphate dehydrogenase, type I [Saccharophagus
degradans 2-40]
gi|89950593|gb|ABD80608.1| type II secretion system protein [Saccharophagus degradans 2-40]
Length = 400
Score = 37.5 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 57/151 (37%), Gaps = 14/151 (9%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+R + + L +SG+S+ + L+ + + + + + + + +
Sbjct: 59 RRDLINMVFQLEQLTKSGVSLLEGLKDLRDSVPESY--FKDVLAGLVESIEGGKTFSESL 116
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL- 298
+NF N +L++ + L+ + R E AA++ +
Sbjct: 117 KNFPN-----DFDTVFVSLVEVGEESGELAKILKDMGETLRWT----DEIVAATVKIIMY 167
Query: 299 --TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
V +++F + +++ + P I+ ++ M
Sbjct: 168 PAIVALVVFCVTAFLMIYLVPKIIPFVEEMG 198
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
+ K + + + +GI++ +AL + S LS + +++ +
Sbjct: 261 NFKLKVARMTNYMALMYSAGITVLRALEISKPLV--SSDVLSGAIDDVYDQIAEGNSISD 318
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
+F + + +++ ++ ++L + E +K ++ P
Sbjct: 319 SFA------RTEIFPPLVVRMVRVGETTGNLDEALLNVSYFYNREVKEAIDKIEPAISPI 372
Query: 298 LTVPMIIFFLPVLILVIIGPA 318
LTV M L ++L ++GP
Sbjct: 373 LTVVMG-TLLGWIMLSVLGPV 392
>gi|218288158|ref|ZP_03492457.1| type II secretion system protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218241517|gb|EED08690.1| type II secretion system protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 412
Score = 37.5 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 8/144 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ V +G+ + AL+ + E + PL + + A++ + +
Sbjct: 70 FVPFCRQFATLVRAGVPLVPALQVLEEQLR--KGPLKKAVGEVAAKVEGGTALWESLAEY 127
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++++ S+ + L +R ++ K+A + P L M
Sbjct: 128 PKVFPP-----MFVQMVRAGEASGSLEEVLESTARFEEGQRETVSKIKSALMYPALVSLM 182
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ L++ +I P+ +S+ +M
Sbjct: 183 SVLVAGFLMINVI-PSFVSVFASM 205
>gi|119872899|ref|YP_930906.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
gi|119674307|gb|ABL88563.1| type II secretion system protein [Pyrobaculum islandicum DSM 4184]
Length = 248
Score = 37.5 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 2/147 (1%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ P L +L V +G+S+ A+ A + +L
Sbjct: 22 WRRAVYVYRLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRRVLTLSEV- 80
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A R + ++ R G + + L V +
Sbjct: 81 -GGLTVEEALWRVAGEVPSPNFRRFALIVTEAARSGARLPEVLDVSARSFATVVEFRQSV 139
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIG 316
+ I+ L VL V+I
Sbjct: 140 ASQLRPYVALYYAIVVVLAVLTDVLIY 166
>gi|85712757|ref|ZP_01043801.1| Type II secretory pathway [Idiomarina baltica OS145]
gi|85693397|gb|EAQ31351.1| Type II secretory pathway [Idiomarina baltica OS145]
Length = 417
Score = 37.5 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 10/162 (6%)
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLT 225
+W+ S + +GI I +A+ +A+ Q+ L +
Sbjct: 60 LWMQLKALTEPSVELDQLIIFCRQMYSLTNAGIPILRAIEGLADT--TQNKRLERALRDV 117
Query: 226 IAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
++L A++ + +S L E+
Sbjct: 118 HSQLERGRTLSAGMAQHPK-----VFSRLIVAIVHVGENTGQLEESFEQLALYLEKEQDT 172
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLIL-VIIGPAILSIIDTM 326
KAA+ P T MI + + +L + + P ++
Sbjct: 173 RKRIKAATRYP--TFVMIALVVALFVLNIFVIPTFANMFSRF 212
>gi|227832052|ref|YP_002833759.1| hypothetical protein cauri_0222 [Corynebacterium aurimucosum ATCC
700975]
gi|227453068|gb|ACP31821.1| putative membrane protein [Corynebacterium aurimucosum ATCC 700975]
Length = 249
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 12/188 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
L +++ + + V ++ + A + + ++ ++ +
Sbjct: 29 LAPAAVFLGVGCCVFFGRPTVVVAVGCIVACALWFANDLAAARRERRGAEALASYFGS-- 86
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVP-LSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ + +G + ALRR + + + L + + + VA
Sbjct: 87 --IAAELRAGSTTASALRRGTDALPDFTPESLRTALSTAAGLAAQGGSPAVALTA----- 139
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
V+ L S R+G ++ + + S+ + R E A+ GP+ T ++
Sbjct: 140 --PEVKRFAALLTLSGRHGVALANLIEQAQSQLDTARRHAGETAASLQGPQATAVILACL 197
Query: 307 LPVLILVI 314
IL+
Sbjct: 198 PLAGILMG 205
>gi|169825592|ref|YP_001695767.1| hypothetical protein Bsph_p180 [Lysinibacillus sphaericus C3-41]
gi|168994869|gb|ACA42408.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 679
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 8/167 (4%)
Query: 150 VGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVE-SGISIDQALRRVA 208
+ ++LI + + P + + R+ ++ L ++ I E + I + L +
Sbjct: 499 LLIILLIVFGIWYIPEILLQLQKNLRRKDMENEVHQFLTIISILREFNSIGVLTLLVWLE 558
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI 268
PL + + L+F + A E N + + + L S S+
Sbjct: 559 RFSVTFKEPLQKCI------LNFDSGPEEALEELSNDISFEAFQQIVERLKLSISR-LSV 611
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVII 315
++ + E E S+ + + PV L+I+
Sbjct: 612 KEAFEDIELEREFYLEQREEYNTRSISNRGDFAYLASVSPVATLLIL 658
>gi|269128337|ref|YP_003301707.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268313295|gb|ACY99669.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 331
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 4/148 (2%)
Query: 151 GAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAED 210
A I + + ++R + A + L + + ++QA+
Sbjct: 73 VAAIGAALLVLGWEGLVGGAAEERRAMARLEALAAWTESLRDTIAGAVGLEQAI---PSS 129
Query: 211 IGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR-YGTSIG 269
+ + L + + + L A F + ALI + R G +
Sbjct: 130 VRAAAPALQQPLRTLVDRLHTRMPMPEALRRFADDLNDPSADLVVAALILNARLRGPGLR 189
Query: 270 DSLRVLVSETRSERLMEAEKKAASLGPK 297
D L L + R+E M +A +
Sbjct: 190 DMLTALSASARAELDMRRRVEADRRATR 217
>gi|126137628|ref|XP_001385337.1| Synaptic vesicle transporter SVOP [Scheffersomyces stipitis CBS
6054]
gi|126092615|gb|ABN67308.1| Synaptic vesicle transporter SVOP [Scheffersomyces stipitis CBS
6054]
Length = 604
Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 6/172 (3%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
V I +V++F + + V E K + + I L
Sbjct: 185 VIILASVTVFVIGFGVGPLLFAPMSEEVGRKPIYATTLAIAVVFIVPCGAAKNIGTLLVC 244
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWI 135
F + L + + G ++ I + P+ I G +
Sbjct: 245 RLIDGIAFSAPMTLIGGSLADIWE------GKDRGTAMAIFSAAPFLGPVTGPIFGGLLA 298
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+ + A + P L++KR +++ D+
Sbjct: 299 DHAPTWRWIYWTFLIIAGFVYVLFISIVPETHAGTLLKKRAKQLRKETGDSR 350
>gi|152993257|ref|YP_001358978.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1]
gi|151425118|dbj|BAF72621.1| general secretory pathway protein F [Sulfurovum sp. NBC37-1]
Length = 417
Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 26/206 (12%), Positives = 60/206 (29%), Gaps = 24/206 (11%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK----------RQSSIKRA 182
+ + L + + F ++ + K ++
Sbjct: 221 LLKLEWALSNYGLLILAILVGGVFALKYFYQNNMDFKYRMDKLMIHPKFYLINKAIFLST 280
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ V SGI + +AL + + E++L A + N AF
Sbjct: 281 MHKYNLVFGELVRSGIPVSEALETAVGMVDNL--AIKEQLLTVNANIGRGMNLAEAFALT 338
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+N +I++ G + L + E + AA + P
Sbjct: 339 GL------YQNMLLQMIKAGEAGGQLDAMLEKVTDYYDMEFQDLIDNLAAYIEP------ 386
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
I+ F ++++++ I + +
Sbjct: 387 IMLFFIAILVLLMALGIFMPMWDLGK 412
>gi|89098207|ref|ZP_01171092.1| hypothetical protein B14911_10612 [Bacillus sp. NRRL B-14911]
gi|89087064|gb|EAR66180.1| hypothetical protein B14911_10612 [Bacillus sp. NRRL B-14911]
Length = 298
Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 32/258 (12%), Positives = 78/258 (30%), Gaps = 11/258 (4%)
Query: 68 ASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIF 127
LR R + + +L ++ + +G+ + ++ ++
Sbjct: 35 EKQHLRLRFKEEIAKRQNRLKVQ--AETGKAEEIFKESGYPLGITGVRWTIIYWILLAFL 92
Query: 128 LI--LGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
I + ++ L + +L F + L++ +++
Sbjct: 93 FINYIAYPYMAKGTISLISIAIIVSVMTLLSAAFPFSLTRFILKRLIEYKKAKRNSELFS 152
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
D+LL +E + + L + +A + + A + F
Sbjct: 153 LYDMLLSEIEMMQQTRINAYSLIRTLKPYFKELDGTITRLLANWTNDKGPEYALDIFAKE 212
Query: 246 TQMDCVRNATQALIQSDRYGTS-IGDSLRVLVSETRS------ERLMEAEKKAASLGPKL 298
+ ++ L + D I SL+ + + R + A L K
Sbjct: 213 IGTNEAKSLANVLKKFDENKRDTIILSLKGMEDMFINSQIENYRRKRKLYVDLAKLPIKA 272
Query: 299 TVPMIIFFLPVLILVIIG 316
T +II V+I+ ++
Sbjct: 273 THGLIILNFVVVIIFMVS 290
>gi|217964508|ref|YP_002350186.1| general secretion pathway protein F [Listeria monocytogenes HCC23]
gi|217333778|gb|ACK39572.1| general secretion pathway protein F [Listeria monocytogenes HCC23]
gi|307570927|emb|CAR84106.1| general secretion pathway protein F [Listeria monocytogenes L99]
Length = 343
Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 24/204 (11%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK----------RQSSIKRAWPD 185
F Y L + P L + + L F N + RQ S
Sbjct: 153 FTYFLLEKVPVLLGIFLLSLFLIFSFIIRKQKQKNAYDRAYFYCRIPYIRQFSRIHYSQY 212
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L ++SG+SI + A+ + L + A E
Sbjct: 213 LSRELGYLLKSGLSITHIMHLFAQ--EESPAFFQAIARQILPTLEQGLSLTKALEKM--- 267
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ + + + L + EK + I+F
Sbjct: 268 ---PIFEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKL------FSFIQPIVF 318
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+ +++V I +IL + +M +H
Sbjct: 319 IVIGILIVSIYLSILYPMFSMVNH 342
>gi|307720366|ref|YP_003891506.1| Type II secretion system F domain-containing protein [Sulfurimonas
autotrophica DSM 16294]
gi|306978459|gb|ADN08494.1| Type II secretion system F domain protein [Sulfurimonas
autotrophica DSM 16294]
Length = 412
Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 9/143 (6%)
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
++++ + + + V++GI + +AL ++ I L E++ + +
Sbjct: 271 KATLNAMISRFMYVFQVLVDAGIPMLEALNIASDIIENSY--LKEKIKRISTSIEEGKSL 328
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
FE + N +I++ G + L + + + A +
Sbjct: 329 YQGFEK------TEVFENMIVEMIKAGEIGGGLDKMLNKITKIYKDRFDYIVDNIATLIE 382
Query: 296 PKLTVPMIIFFLPVLILVIIGPA 318
P + + I F+ VL L I P
Sbjct: 383 P-ILIAAIAGFVMVLALGIFLPM 404
>gi|225374680|ref|ZP_03751901.1| hypothetical protein ROSEINA2194_00300 [Roseburia inulinivorans DSM
16841]
gi|225213470|gb|EEG95824.1| hypothetical protein ROSEINA2194_00300 [Roseburia inulinivorans DSM
16841]
Length = 547
Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 31/304 (10%), Positives = 96/304 (31%), Gaps = 33/304 (10%)
Query: 21 AVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSL 80
+ L + + + E + + + + L + + A +++ + + +
Sbjct: 246 FFAAALLGSVLFLTVYQNAERSQILTQIKIPSYQLM------MLPERAQEQVKKQYQELV 299
Query: 81 RNFV-KKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
V + + E++ + E SL + + +++
Sbjct: 300 AQVVPETFKMDQEAFKEHLEQLAVWEELKQELSLTESVQGAEE------FVKALFLQVRA 353
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWI-SNLVQKRQSSIKRAWPDALDLLLICVESGI 198
+ ++++ + F P +++ + + R+ + +LL+
Sbjct: 354 YQGIRIAWYHILFIVVVSILAFQIPELFLVAEQWKSREKRMSECLRLQTVVLLLIHYEKT 413
Query: 199 SIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQAL 258
++++ L ++ ++E + +R + + + V+ AL
Sbjct: 414 TVEEILSQMENFAVLFQSQMAEAVDHFSY------DRIRSLQKLKQEIPDEPVQRICDAL 467
Query: 259 IQSDRYGTSIGDSLRVLVSE--------TRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ + ++ L E R + E A K+ + +F L +L
Sbjct: 468 EFCEEL--PVEEAFLNLEDEREYFLKKNMEERRNYQGECIAL---AKMAAYLPMFLLIIL 522
Query: 311 ILVI 314
LV+
Sbjct: 523 KLVV 526
>gi|163840096|ref|YP_001624501.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
gi|162953572|gb|ABY23087.1| tyrosine phenol-lyase [Renibacterium salmoninarum ATCC 33209]
Length = 158
Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 37/131 (28%), Gaps = 3/131 (2%)
Query: 31 VVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLK 90
+ +P + R++ + L L++ LN +
Sbjct: 24 LRLPFMRQRSFSARIEPQLRSVAADSRLLRPVEATLRFFGPLERILRALLKDTSSWLN-R 82
Query: 91 AILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRV 150
+ + +L AG + + +L+ +L ++ + + + V
Sbjct: 83 FNTGNAALTARLERAG--KDQAAIDFRAEQLIWGSCSFVLAVVTVIVFASSGAFNLLFAV 140
Query: 151 GAVILIGYVGF 161
+ G+
Sbjct: 141 LICLGAAIFGY 151
>gi|161617502|ref|YP_001591467.1| hypothetical protein SPAB_05361 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161366866|gb|ABX70634.1| hypothetical protein SPAB_05361 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 371
Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 12/188 (6%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS-------SIKRAWPDA 186
+ + + ++ + V + + + + R+ S+ + A
Sbjct: 178 ALGFMNGVAKWSSEWGVASAATAAGLVLLSFWSLPRWRGRLRRCADWLLPWSVYKDLQGA 237
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRT 246
+ L+ I G + + L+ + G L E + + +S + A N
Sbjct: 238 VFLMNIGALLGSGVQE-LKALQILNGFAPPWLQERIEAAMECMSEGDSLGRALRNSGYDF 296
Query: 247 QMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
N L G + R + L ++A + V ++ FF
Sbjct: 297 PSREAVNYLSLL----DKGDGAASLITNYADRWREQALARVARRANATKLFSLVLIMSFF 352
Query: 307 LPVLILVI 314
L +L++V+
Sbjct: 353 LLILMMVM 360
>gi|156935375|ref|YP_001439291.1| type IV pilin biogenesis protein [Cronobacter sakazakii ATCC
BAA-894]
gi|156533629|gb|ABU78455.1| hypothetical protein ESA_03233 [Cronobacter sakazakii ATCC BAA-894]
Length = 399
Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 10/147 (6%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ +L + +GI + Q+L V E + S + + A ++ A E
Sbjct: 260 QQLSQIYTVLSLMQRAGIPLLQSLGSVEETLA--SPLWQQAVGRVKASIAGGLPFWKALE 317
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
Q L+++ S+ L L + A+ AA+L P +
Sbjct: 318 ------QESVFTALCIQLVRTGEETGSLDLMLEKLAEWHLGQTSERAQTLAATLEPLMM- 370
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
M+I + ++V + I + D M
Sbjct: 371 -MVIGLIVGTLVVAMYLPIFRLGDAMS 396
>gi|326383473|ref|ZP_08205160.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
B-59395]
gi|326197879|gb|EGD55066.1| hypothetical protein SCNU_11071 [Gordonia neofelifaecis NRRL
B-59395]
Length = 265
Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 11/184 (5%)
Query: 137 GYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK----RAWPDALDLLLI 192
+ + P + + G G + + + ++ R AL ++
Sbjct: 42 PWLLVWVLPAAALLVFGVAPGVAGALVAGLVTRQRRRSCREALADRDSRQLIAALAVMSA 101
Query: 193 CVESGISIDQALRRVAEDIGGQS--VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDC 250
+ G + QA R A D+ + E+ A + + T+
Sbjct: 102 ELSVGAPVVQACRAAAADLARIDHDGAVGPELARMAARAELGGDPGP-----ESATRAGP 156
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
VR ++ S YG +GD L L + S + A +A GP+ T ++ V
Sbjct: 157 VRRLARSWAVSLEYGLPVGDVLAALREDLVSRQDFAARTRAGLAGPRATAVVLAGLPVVG 216
Query: 311 ILVI 314
+++
Sbjct: 217 LVLG 220
>gi|322391488|ref|ZP_08064957.1| hypothetical protein HMPREF9180_0347 [Streptococcus peroris ATCC
700780]
gi|321145571|gb|EFX40963.1| hypothetical protein HMPREF9180_0347 [Streptococcus peroris ATCC
700780]
Length = 640
Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 277 SETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII--DTMKDH 329
R + +E E KA+ + L + I P++ +V++ +++I+ + H
Sbjct: 232 ERLRDFKKIEIEIKASKVQASLMIKWI---FPIIFIVLL---MMTIMYYRVFRKH 280
>gi|118431778|ref|NP_148457.2| hypothetical protein APE_2206.1 [Aeropyrum pernix K1]
gi|116063100|dbj|BAA81218.2| hypothetical protein [Aeropyrum pernix K1]
Length = 284
Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 3/149 (2%)
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
L + K LR+ + + + P V + I A + L
Sbjct: 18 ALSGVNSILAGKDPTKADILRISGLAGLYLIVVSIPPAVSHFNVTRANKGIGLAMSNFLR 77
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
+ ++G+S +Q++ ++ PL++ + L + + + R +
Sbjct: 78 DIAETRKTGLSPEQSIISLS---ARDYGPLTKVVRRIATSLQLGMSLEDSVRRSVRRIKD 134
Query: 249 DCVRNATQALIQSDRYGTSIGDSLRVLVS 277
+A + L+ S G + L L
Sbjct: 135 WASLSALRFLVDSISVGGGSPEVLDALAR 163
>gi|145638797|ref|ZP_01794406.1| putative type IV pilin secretion protein [Haemophilus influenzae
PittII]
gi|145272392|gb|EDK12300.1| putative type IV pilin secretion protein [Haemophilus influenzae
PittII]
gi|309750287|gb|ADO80271.1| Type II secretory pathway, component PilC [Haemophilus influenzae
R2866]
Length = 406
Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 25/230 (10%), Positives = 68/230 (29%), Gaps = 29/230 (12%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + + I + + L + L A+ + + F +
Sbjct: 184 VPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQIWFHQQ 243
Query: 173 QKRQSSIK---------RAWPDALDLLLICVESGISIDQALRRVAEDIGGQ--------S 215
+ + S+ + L I +++G+ ++QAL
Sbjct: 244 KNQLISVTPIFGTIQKLSRLVNFSRSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVND 303
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ L +E+ + +S + D Q ++Q + L +
Sbjct: 304 IVLDKEVRSILQWVSQGYAFSDS-------VSSDLFPMEAQQMLQIGEQSGKLALMLEHI 356
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ + + + + + P+++ + LI +I+ L I +
Sbjct: 357 ADNYQEKLNHQIDLLSQ-----MLEPLMMVIIGSLIGIIMMGMYLPIFNM 401
>gi|229824690|ref|ZP_04450759.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC
49176]
gi|229791019|gb|EEP27133.1| hypothetical protein GCWU000182_00038 [Abiotrophia defectiva ATCC
49176]
Length = 404
Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 84/267 (31%), Gaps = 19/267 (7%)
Query: 53 EILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
+ ++ + D+ + + + + + + + + + G +E
Sbjct: 148 SRMAERFEKKAKLDAMLKKASVYPTIVIVVSIIVIIVMLVQIIPTYKSMFDQLG--AELP 205
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ +L V+L II II + + ++ + I G + P I
Sbjct: 206 IQTVLAVKLSDFIIAKWYLIIAVLIAFIVFIAVYKKTISGQIFFGTIARKLPVFGI---- 261
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+IK A L V +G+ + +AL A + + + + E+
Sbjct: 262 ----INIKNAASSFARTLSTLVYAGLPMVEALEITANTMDNY--VYKQCLKIVKDEVVKG 315
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ + + + L L E M + A
Sbjct: 316 VPMSEPIQ------NSKLFPPMVGYMTKIGEETGDVEGMLSRLADYYDEEVEMATQTLMA 369
Query: 293 SLGPKLTVPMIIFFLPVLILVIIGPAI 319
+L P + + + + +LI VI+GP I
Sbjct: 370 ALEPFIMMVL-AGIVIMLISVIMGPMI 395
>gi|329123678|ref|ZP_08252238.1| type IV pilus assembly protein PilC [Haemophilus aegyptius ATCC
11116]
gi|327469877|gb|EGF15342.1| type IV pilus assembly protein PilC [Haemophilus aegyptius ATCC
11116]
Length = 405
Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 22/203 (10%), Positives = 57/203 (28%), Gaps = 15/203 (7%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS----------SIKRA 182
+ L+ + + + + +K Q
Sbjct: 203 AILLSISNFLKQNIGILLFFALSFVLFYYFYLKRQTWFHQKKNQLISVTPIFGTIQKLSR 262
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ L I +++G+ ++QAL ++ E+ + F
Sbjct: 263 LVNFSHSLQIMLQAGVPLNQALDSFLPRTQTWQTKTLVNDIILDKEVRSILQWVSQGYAF 322
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N D Q ++Q + L + + + + + + + P+
Sbjct: 323 SNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQ-----MLEPL 377
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
++ + LI +I+ L I +
Sbjct: 378 MMVIIGSLIGIIMMGMYLPIFNM 400
>gi|171186313|ref|YP_001795232.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
gi|170935525|gb|ACB40786.1| type II secretion system protein [Thermoproteus neutrophilus
V24Sta]
Length = 248
Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 2/147 (1%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
++ P L +L V +G+S+ A+ A + +L
Sbjct: 22 WRRAVYVYRLEGQIPQVLRVLSDAVSAGLSLRGAVESAAALALRPMADVLRHVLTLSEM- 80
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ A R + ++ R G + + L V +
Sbjct: 81 -GGLTVEEALWRVAGEIPSPNFRRFALIVTEATRSGAKLPEVLDVSARSFATVVEFRQSV 139
Query: 290 KAASLGPKLTVPMIIFFLPVLILVIIG 316
+ I+ L VL V+I
Sbjct: 140 ASQLRPYVALYYAIVVVLAVLTDVLIY 166
>gi|313143570|ref|ZP_07805763.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128601|gb|EFR46218.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 371
Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 25/210 (11%), Positives = 68/210 (32%), Gaps = 14/210 (6%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L L + L + I I I +F +++ + + + G+ +
Sbjct: 157 LPQFLEMFLSMQIELPIYTRILLFMQTFFIDFGLIFALCVLCAVALFGYAY-KNTLHFKA 215
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ + L+ +++ + + + L+ + I+ L+
Sbjct: 216 KIHAYILHIP------LVGAIIKAHFYYQYSFSLYIQLKSATPMDLALALSKDISNLALK 269
Query: 233 PNRQVAFENFYNRTQMDC-------VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLM 285
+ A E+ N + + + ALI + ++ + L V
Sbjct: 270 AKFESALESVKNGKALSVSLKEQNALDDIALALINAGEQSGNLAEMLEVCAKHFEEIATE 329
Query: 286 EAEKKAASLGPKLTVPMIIFFLPVLILVII 315
+ + + + P L++ M I L + + + +
Sbjct: 330 KTDMLISLIEPSLSLTMGILLLFLALGIFV 359
>gi|171914419|ref|ZP_02929889.1| type IV pilus biogenesis protein PilC [Verrucomicrobium spinosum
DSM 4136]
Length = 426
Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 20/137 (14%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L ++SG+ + + L + + + + + + + F
Sbjct: 83 LMIFTRQLATLIDSGLPLLRGLTVLGR--QEPNPIMKRTINTLADSVQTGSTFSESLQQF 140
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK----L 298
++++ G + L L ++KA L K +
Sbjct: 141 PR-----IYNKLYINMVKAGELGGVLELVLNRLAEY---------QEKAQKLKNKIVAAM 186
Query: 299 TVPMIIFFLPVLILVII 315
PMI+ + V I++ +
Sbjct: 187 VYPMIVMIIAVGIMIFL 203
>gi|55378674|ref|YP_136524.1| hypothetical protein rrnAC1950 [Haloarcula marismortui ATCC 43049]
gi|55231399|gb|AAV46818.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 559
Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 68/209 (32%), Gaps = 14/209 (6%)
Query: 128 LILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDAL 187
+L + + R V L+ Y P ++ + + R D +
Sbjct: 285 ALLACAPLGAVVAAGLWSLGYRPVNVALLSYATVGVPVGVVTVRRARADDAKDREIQDFV 344
Query: 188 DLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR--------QVAF 239
+ V G +A+RRVA+D+ L+ ++ LS + A
Sbjct: 345 HAVAGHVALGRPFPEAVRRVADDVEL--GALASDVQSLAFTLSLGDSPGDAAADRRAAAL 402
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ F +R ++ + G+ D L +E + ++A L +
Sbjct: 403 DQFVDRVGTPMAEQTIGLVVGALDTGSDAEDVFETLQTEIGQLYHLRKSIRSALL-VYVA 461
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMKD 328
V L + I V + + ++D+
Sbjct: 462 VGWTTALLVIGITVAVN---IYVLDSFAQ 487
>gi|11497992|ref|NP_069216.1| transmembrane oligosaccharyl transferase, putative [Archaeoglobus
fulgidus DSM 4304]
gi|2650253|gb|AAB90856.1| transmembrane oligosaccharyl transferase, putative [Archaeoglobus
fulgidus DSM 4304]
Length = 868
Score = 37.5 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 41/162 (25%), Gaps = 9/162 (5%)
Query: 15 AVAITTAV-SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
A+ + +I ++ + + L +KR +A + Q +
Sbjct: 105 LRAVLAFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGQFLQRSILGFNDHHI 164
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRA--------AGFRSEYSLNILLVVRLVVPI 125
+ L ++ + L A AG + ++ PI
Sbjct: 165 WEAFWQVSALGTFLLAYNRWKGHDLSHNLTARQMAYPVIAGITIGLYVLSWGAGFIIAPI 224
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
I + ++ + V V P +
Sbjct: 225 ILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAF 266
>gi|309389143|gb|ADO77023.1| Type II secretion system F domain protein [Halanaerobium praevalens
DSM 2228]
Length = 343
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 11/138 (7%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L I ++SG+S+++ L +A+ + +E + + A + +
Sbjct: 15 LKIMLQSGLSLNRTLLIMAQQSRSERE--AEIYSNLLKNIESGLTLASALK------EEK 66
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
++ ++++ S+ L L +S+ ++ E K +I L
Sbjct: 67 IFKDLFIEIVRAGEKSGSLVSVLTSLEEYYKSKNELKKEIK--KACFYPLTVIITLILAA 124
Query: 310 LILV-IIGPAILSIIDTM 326
+ I P + +
Sbjct: 125 FFIFKFILPVFVDLFAEF 142
>gi|212638472|ref|YP_002314992.1| type II secretory pathway component PulF [Anoxybacillus
flavithermus WK1]
gi|212559952|gb|ACJ33007.1| Type II secretory pathway component PulF [Anoxybacillus
flavithermus WK1]
Length = 403
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
+ + L +++G++I A R +AE +S L + ++ +L A
Sbjct: 63 QHFVIYLRQFATLLKAGVTIVDATRILAE--QTESKALKKALVHIEEQLRSGQPLSTAMT 120
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
+ N +I++ ++ ++L L + +A P +
Sbjct: 121 DHPNIFPP-----LVINMIRAGEASGNMDETLERLADHFEKVHRTRQKIVSALAYPVVVG 175
Query: 301 PMIIFFLPVLILVIIGPAILSIIDTMK 327
+ + + + +LV + P +S+
Sbjct: 176 IIAVIVV-IFLLVQVVPTFVSMFADFG 201
>gi|333025387|ref|ZP_08453451.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071]
gi|332745239|gb|EGJ75680.1| hypothetical protein STTU_2891 [Streptomyces sp. Tu6071]
Length = 275
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 4/114 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LL V +G +AL L +A F + A
Sbjct: 101 LCGLLAGEVRAGSGPAEALAHTVN----ACGELGPARADILAAARFGGDVPAALRQAARV 156
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + G + L L ++R A+ A G + T
Sbjct: 157 PGAEGLVGLAACWRVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARAT 210
>gi|294788003|ref|ZP_06753247.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC
29453]
gi|294484296|gb|EFG31979.1| type IV pilin biogenesis protein PilC [Simonsiella muelleri ATCC
29453]
Length = 424
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L +++G+ + QA VA+ G + ++ ++ A++ + AF
Sbjct: 89 FTRQLCTMMKAGLPLMQAFDIVAK--GHSNASMTNLLMSVRADVEQGTSMADAFSKHPKY 146
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
L+ + G + L L + ++ + K+A
Sbjct: 147 -----FSKFYCNLVGAGEAGGVLDSLLDKLATYMEKTEAIKKKVKSA 188
>gi|325109734|ref|YP_004270802.1| type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
gi|324970002|gb|ADY60780.1| Type II secretion system F domain protein [Planctomyces
brasiliensis DSM 5305]
Length = 402
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 40/299 (13%), Positives = 87/299 (29%), Gaps = 30/299 (10%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVN--K 101
R+ E + S+ + K + +F + V ++V
Sbjct: 113 RLAEAMKRHERVFGDLAVSMVRAGEEGSFMEDVLKRIASFTEHQEELKSRVIGSMVYPFF 172
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLIL--GIIWIFGYDKLLEYPFQLRVGAVILIGYV 159
L + G ++ V + + + W L Q + VILI
Sbjct: 173 LLSIGTVVVAAMMTFFVPKFEPIFEGMAGRGSLPWATVALMSLSDVLQNYLWIVILILIA 232
Query: 160 GFCAPSVWISNLVQKRQSS-------------IKRAWPDALDLLLICVESGISIDQALRR 206
G A S W+ + + A +L +++G+ I Q+LR
Sbjct: 233 GGVALSRWLKTEEGRMKFDAIRLKMIGIGPVVHSLAIARFCRILGTLLKNGVPILQSLRI 292
Query: 207 VAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGT 266
+ + LS + LS + +I
Sbjct: 293 AKD--ATGNRVLSRAIGQAAESLSAGEALANPLGASGQ------FPDEVVEMIAVGEEAN 344
Query: 267 SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
++ L + ++ L ++ P+++ F+ + L ++ +L I+ +
Sbjct: 345 NLEQVLINVADNME-----RQTERQLELFVRMLEPILLTFMAAITLFVVVALMLPIMQS 398
>gi|253577454|ref|ZP_04854769.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843154|gb|EES71187.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 690
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 9/184 (4%)
Query: 148 LRVGAVILIGYVGFC---APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQAL 204
L+ V+L + G+ AP + + RQ +K ++ + E ++
Sbjct: 501 LKWWEVMLALFGGWVGYSAPVGVLQFRRRMRQMEMKHEVDQLQSVIAMLSEMDRM---SV 557
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRY 264
+ E + + + + + A EN + L +
Sbjct: 558 EHMLEWMERFAHIFKTPIQHCLLHYEHGA--EQALENLKAEAPFLPFVRMVEKLQMAVER 615
Query: 265 GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
I D+ L SE + + L K +I F P+++L+ +
Sbjct: 616 -IPIRDAFDDLESEQTYLQEQRKQDYEGLLDAKAGWGKMIGFAPMMVLIFGYLVFPLVYV 674
Query: 325 TMKD 328
++
Sbjct: 675 SLSQ 678
>gi|294668186|ref|ZP_06733293.1| bacterial type II secretion system protein F domain protein
[Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291309894|gb|EFE51137.1| bacterial type II secretion system protein F domain protein
[Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 352
Score = 37.1 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 7/123 (5%)
Query: 170 NLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+++ + L +++G+ + QA VA G + +++ ++ +++
Sbjct: 1 MKATRKKRITQEDITVFTRQLATMMKAGLPLMQAFEIVAR--GHVNPSMTQLLMAVRSDV 58
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ AF LI + G + L L + ++ +
Sbjct: 59 EQGSSMGAAFAKHPKY-----FDKFYCNLISAGEAGGVLEHLLDKLAVYKEKTQSIKKKV 113
Query: 290 KAA 292
K+A
Sbjct: 114 KSA 116
>gi|168180496|ref|ZP_02615160.1| bacterial type II secretion system protein F [Clostridium botulinum
NCTC 2916]
gi|182668647|gb|EDT80625.1| bacterial type II secretion system protein F [Clostridium botulinum
NCTC 2916]
Length = 396
Score = 37.1 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 68/201 (33%), Gaps = 16/201 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSSIKRAW 183
++ I +F + + V Y + + ++ Q
Sbjct: 204 LGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKIKYAVDNLKIKTPILGQIYKNIFI 263
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + + + ++SGI I+++L+ + E + E + + + ++
Sbjct: 264 CNFSNSMNLMIKSGIPINKSLKLLEEV--TDNYIFKENIKNLNKNIKDGKSISISLNKCG 321
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + + G + +S + + E+K + KL P I
Sbjct: 322 FSNKI-----LLSMVHIGEESG-RLEESFYSVYKIL----KKDLEEK-LKVSVKLIEPTI 370
Query: 304 IFFLPVLILVIIGPAILSIID 324
I F+ ++I +I + +++
Sbjct: 371 IIFMSLIICIIFIYVFIPMMN 391
>gi|148663519|ref|YP_001285042.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|289555918|ref|ZP_06445128.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
KZN 605]
gi|308379570|ref|ZP_07486790.2| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu010]
gi|148507671|gb|ABQ75480.1| putative conserved alanine rich membrane protein [Mycobacterium
tuberculosis H37Ra]
gi|289440550|gb|EFD23043.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
KZN 605]
gi|308356401|gb|EFP45252.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
SUMu010]
gi|328460427|gb|AEB05850.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
KZN 4207]
Length = 226
Score = 37.1 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN---FY 243
LD+L +C+ +G+++ A L+ + L+ + +A+
Sbjct: 81 LDVLAVCLAAGMAVS---TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLP 137
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + +S G ++ D + L + R + A A G + P+
Sbjct: 138 PGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLG 197
Query: 304 IFFLPVLILVIIGPAILSI 322
+ FLP + V I P ++ +
Sbjct: 198 LCFLPAFLCVGIVPLVVGL 216
>gi|89098206|ref|ZP_01171091.1| hypothetical protein B14911_10607 [Bacillus sp. NRRL B-14911]
gi|89087063|gb|EAR66179.1| hypothetical protein B14911_10607 [Bacillus sp. NRRL B-14911]
Length = 343
Score = 37.1 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 25/197 (12%), Positives = 74/197 (37%), Gaps = 6/197 (3%)
Query: 120 RLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI 179
+ + + I+ + I L ++IG V P + + ++ ++++
Sbjct: 100 KWTMGVSTFIVLSLLIGFLTFSLILVKYQDAFLGLIIGTVVSIIPYIILHVQLRNTRNAV 159
Query: 180 KRAWPDALDLLLICV-ESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV- 237
+ ++L++ S + QAL+ I L ++ I++L +
Sbjct: 160 GNQLTEIVELIIHAYGSSSSDMYQALKVTQSHIAE--KELRSILVRLISDLQTARTEEEM 217
Query: 238 --AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + F +++S + ++ +L L ++ + + M ++KA+S
Sbjct: 218 RLSIDLFIFTCGNSWSMRLGNIILKSYLHQENVMSALIQLQNQMVNNQKMLEQEKASSYD 277
Query: 296 PKLTVPMIIFFLPVLIL 312
+ + + P+ ++
Sbjct: 278 AFVDATLTVILFPISLI 294
>gi|24379576|ref|NP_721531.1| putative histidine kinase; homolog of RumK and ScnK [Streptococcus
mutans UA159]
gi|24377522|gb|AAN58837.1|AE014951_8 putative histidine kinase [Streptococcus mutans UA159]
Length = 437
Score = 37.1 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 26/237 (10%), Positives = 59/237 (24%), Gaps = 9/237 (3%)
Query: 3 HYFFDLFDATELAVAITTA--VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQI 60
+F L L V + ++ L++ + G + E +A +
Sbjct: 5 KFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKIAQSSQQDAFNIS 64
Query: 61 TSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVR 120
QK+ + V+ L L + + VR
Sbjct: 65 KRSQKEMDKQKTWAMVLNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVR 124
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
++F + ++ L F + + + + + R
Sbjct: 125 GQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFVFLGIIFLFIFVLFSHSKLRIKKEI 184
Query: 181 RAWPDALDLLLICVES-------GISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
AL L + I AL + + ++ + + +L
Sbjct: 185 EPIVSALTFLSQGQSAALNEKGNFSEIKTALNETSHILEESNMMKEQWIRGVSHDLR 241
>gi|290893545|ref|ZP_06556528.1| general secretion pathway protein F [Listeria monocytogenes FSL
J2-071]
gi|290556890|gb|EFD90421.1| general secretion pathway protein F [Listeria monocytogenes FSL
J2-071]
Length = 343
Score = 37.1 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 24/204 (11%)
Query: 136 FGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK----------RQSSIKRAWPD 185
F Y L + P L + + L F N + RQ S
Sbjct: 153 FTYFLLEKVPVLLGIFLLSLFLIFSFIIRKQKQKNAYDRAYFYCRIPYIRQFSRIHYSQY 212
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L ++SG+SI + A+ + L + A E
Sbjct: 213 LSRELGYLLKSGLSITHIMHLFAQ--EESPAFFQAIARQILPTLEQGLSLTKALEKM--- 267
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ ++ + + + L + EK + I+F
Sbjct: 268 ---PIFEKELYYIAIHGEKNGNLAEEFLFYYNLCHQKSLQKTEKL------FSFIQPIVF 318
Query: 306 FLPVLILVIIGPAILSIIDTMKDH 329
+ +++V I +IL + +M +H
Sbjct: 319 IVIGILIVSIYLSILYPMFSMVNH 342
>gi|238897818|ref|YP_002923497.1| component in type IV pilin biogenesis, transmembrane protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465575|gb|ACQ67349.1| component in type IV pilin biogenesis, transmembrane protein
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 405
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 22/224 (9%), Positives = 62/224 (27%), Gaps = 13/224 (5%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + +F +KL+ Y + ++L
Sbjct: 186 LPEFAKIYASFDATLPWFTRALLFLSNKLINYGLYIASILILLGIVYCQILRKKMNWQQR 245
Query: 173 QKR---------QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
++ + L I +G+S+ L+ ++ ++ + +
Sbjct: 246 EQAFLFRLPFFSKLIRGHCLTQIFRTLAITQLAGLSLASGLKVS--ELSSNNLFYQKAVN 303
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ A + Q I+ S+ L L + +
Sbjct: 304 KIYEKIKQGLTFSDALSQQNELSSYRLFPVLCQQFIRVGEESGSLDILLEKLATWYQKHT 363
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
AE + P L +++ + ++++ + + + +K
Sbjct: 364 QELAENFTQMIEPILM--LVVGVIVGILIIAMYLPVFQLSHVIK 405
>gi|302520916|ref|ZP_07273258.1| integral membrane protein [Streptomyces sp. SPB78]
gi|302429811|gb|EFL01627.1| integral membrane protein [Streptomyces sp. SPB78]
Length = 255
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 4/114 (3%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LL V +G +AL L +A F + A
Sbjct: 81 LCGLLAGEVRAGSGPAEALAHAVN----ACGELGPARADILAAARFGGDVPAALRQASRV 136
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ + + G + L L ++R A+ A G + T
Sbjct: 137 PGAEGLVGLAACWHVALDRGAGLAVGLERLERALLADRDQRADLLAQLSGARAT 190
>gi|296129507|ref|YP_003636757.1| hypothetical protein Cfla_1661 [Cellulomonas flavigena DSM 20109]
gi|296021322|gb|ADG74558.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109]
Length = 354
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 13/168 (7%)
Query: 5 FFDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ------ 58
D +++ A+++ + A + L +++++ E+E LR Q
Sbjct: 1 MIDFRYHIVSLISVFLALAVGIALGAGPLKETIGDTLTGQVEALRAEKETLRAQLDETQG 60
Query: 59 --QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNIL 116
DSAS RL R + L+ + +L AG S + +
Sbjct: 61 DLAAEGAFVDSASDRLLAGALTDRRVALVLLDQVTEEEVAALTERLEQAG-ASVSATATV 119
Query: 117 LVVRLVVPII----FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVG 160
+ L ++ + + + ++ G VG
Sbjct: 120 NSTWTDPALATYRRTLAGTLVSYLDEPPAADAGTESELAEALVAGLVG 167
>gi|300854277|ref|YP_003779261.1| putative general secretion pathway protein F [Clostridium
ljungdahlii DSM 13528]
gi|300434392|gb|ADK14159.1| predicted general secretion pathway protein F [Clostridium
ljungdahlii DSM 13528]
Length = 340
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 8/140 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + + +GI+I + L + S L + ++ + + F N
Sbjct: 6 LCSQLSVMLGAGINISRVLDNLETQCNKSS--LRLALKSIKEDVIKGQSIHSSMAKFKNI 63
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+I+ + + L L + + + KA+ + P +T IF
Sbjct: 64 FPN-----FMIEMIRVGETSGKLDEVLIKLSEYYEKKNNIISTIKASLIYPVVTFITSIF 118
Query: 306 FLPVLILVIIGPAILSIIDT 325
+ L++ II P II +
Sbjct: 119 IVMFLMIKII-PQFTDIIQS 137
>gi|168210794|ref|ZP_02636419.1| putative pilus biogenesis protein [Clostridium perfringens B str.
ATCC 3626]
gi|170711113|gb|EDT23295.1| putative pilus biogenesis protein [Clostridium perfringens B str.
ATCC 3626]
Length = 339
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+ I ++L + + + E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKK--YKESLKRIEKKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ N + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPIS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYVTYILPQFVDMYE 141
>gi|146303967|ref|YP_001191283.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
gi|145702217|gb|ABP95359.1| type II secretion system protein [Metallosphaera sedula DSM 5348]
Length = 620
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 21/201 (10%), Positives = 53/201 (26%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
+ + +G+ L + L A I V + P + ++
Sbjct: 88 VLEWPGRWCNEMVNLYYVGLPVSAMLGMALMMMYPLASPAGGAIVLVTYFLPWMRYMDIR 147
Query: 173 QKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFL 232
+ ++ P L+ E G + + + + ++ E + +F
Sbjct: 148 STLKRQVELELPVVSLLMWGLSEIGYDVMRIINALRKETSELVAIPREFAKIHRDFTTFN 207
Query: 233 PNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAA 292
+ A + I G + L E + E
Sbjct: 208 LSPDEAVLRETDNHPSKLFERLLGGAITISSIGGELSVHLSRTTQEILAWMKETWEAYGR 267
Query: 293 SLGPKLTVPMIIFFLPVLILV 313
++ + M+ + L+ +
Sbjct: 268 AVSNLGELSMLFLLMVPLVAI 288
>gi|315653337|ref|ZP_07906259.1| competence protein [Lactobacillus iners ATCC 55195]
gi|315489262|gb|EFU78902.1| competence protein [Lactobacillus iners ATCC 55195]
Length = 331
Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S +Q+L + + + + ++ + +
Sbjct: 19 FLDYLQQSLNNGFSFNQSL----KILPHVWNEKVNIIQKLSSNIAQGNDIGQSLVAIGFS 74
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R Q + + ++G ++ +SL L R + + K+ P + + M++
Sbjct: 75 ------RMIAQQISFAIKHG-NLIESLSQLTKIMRLKNEQIKKIKSEMAYPAVLIVMMVS 127
Query: 306 FLPVL 310
L +
Sbjct: 128 LLIAM 132
>gi|152964449|ref|YP_001360233.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
gi|151358966|gb|ABS01969.1| type II secretion system protein [Kineococcus radiotolerans
SRS30216]
Length = 165
Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 3/143 (2%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ + P LDL+ VE+G+ +AL + + G +
Sbjct: 5 LTQRRGSLRREPPVDVPLVLDLVAAAVEAGLPPGRALEAAVDALAGTGAE-ETALRRVAV 63
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+LS+ + + A+ + + + +AL+ S R G L + R+ R EA
Sbjct: 64 QLSWGSSPEEAWRDLTG--ESERWDELAEALLLSTRTGAPAASLLASAAASARAARRWEA 121
Query: 288 EKKAASLGPKLTVPMIIFFLPVL 310
E AA L L +P+ + LP
Sbjct: 122 EAAAARLSALLVLPLGLCTLPAF 144
>gi|297544540|ref|YP_003676842.1| Type II secretion system F domain-containing protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842315|gb|ADH60831.1| Type II secretion system F domain protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 403
Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 13/139 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +GI + A+ V + +G +SE + ++ +
Sbjct: 271 FTRTLGTLISAGIPLIAAMEVVEKVVGNTI--VSEGLRKAQEDIKKGLPLSEPLKKMG-- 326
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+I S+ L E A S L P+II
Sbjct: 327 ----IFPPMVIQMISVGESSGSLDSILNKAADFYDGEVDT-----AVSQMTTLLEPLIIV 377
Query: 306 FLPVLILVIIGPAILSIID 324
L +++ I+ I+ + +
Sbjct: 378 MLAIVVGFIVVSIIMPLFE 396
>gi|110798866|ref|YP_696526.1| putative pilus biogenesis protein [Clostridium perfringens ATCC
13124]
gi|110673513|gb|ABG82500.1| putative pilus biogenesis protein [Clostridium perfringens ATCC
13124]
Length = 339
Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
K L V+SG+ I ++L + + + E + ++ A
Sbjct: 4 FKDEASYICLNLSTYVKSGMPIGRSLDLIKNTVKDKK--YKESLKRIEKKVLNGEALSKA 61
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE-KKAASLGPK 297
F+ N + + +++ ++ + L +E+ ++ + K+
Sbjct: 62 FKEEGNLYP-----DLMKDMMKIGEESGNLEEVLEKCARNILAEKEIKNKIIKSLRYPIS 116
Query: 298 LTVPMIIFFLPVLILVIIGPAILSIID 324
L + +I + + I P + + +
Sbjct: 117 LLIGLI--IMIFGYVTYILPQFVDMYE 141
>gi|153938465|ref|YP_001391230.1| type II secretion system protein F [Clostridium botulinum F str.
Langeland]
gi|152934361|gb|ABS39859.1| bacterial type II secretion system protein F [Clostridium botulinum
F str. Langeland]
gi|295319266|gb|ADF99643.1| bacterial type II secretion system protein F [Clostridium botulinum
F str. 230613]
Length = 396
Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 68/201 (33%), Gaps = 16/201 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSSIKRAW 183
++ I +F + + V Y + + ++ Q
Sbjct: 204 LGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKIKYAVDNLKIKTPILGQIYKNIFI 263
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + + + ++SGI I+++L+ + E + E + + + ++
Sbjct: 264 CNFSNSMNLMIKSGIPINKSLKLLEEV--TDNYIFKENIKNLNKNIKDGKSISISLNKCG 321
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + + G + +S + + E+K + KL P I
Sbjct: 322 FSNKI-----LLSMVHIGEESG-RLEESFYSVYKIL----KKDLEEK-LKVSVKLIEPTI 370
Query: 304 IFFLPVLILVIIGPAILSIID 324
I F+ ++I +I + +++
Sbjct: 371 IIFMSLIICIIFIYVFIPMMN 391
>gi|332531030|ref|ZP_08406949.1| general secretion pathway protein F [Hylemonella gracilis ATCC
19624]
gi|332039511|gb|EGI75918.1| general secretion pathway protein F [Hylemonella gracilis ATCC
19624]
Length = 412
Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDI--GGQSVPLSEEMLLTIAELSF 231
+R+ L V +G+ +++AL +A+D+ S + E++
Sbjct: 62 QRRVFNASQLAVWTRQLAGLVAAGLPLERALASLAQDLSQDSGSPEQQRLIAQLRDEVNG 121
Query: 232 LPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKA 291
A V ++ + G +G L L E + ++ A+
Sbjct: 122 GSTFARALAQHPRTFDDSYVA-----VVSAGEQGGQLGQVLDRLADELDGQEVLRAKLMG 176
Query: 292 ASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A+L P + + F V++ ++ + + +
Sbjct: 177 AALYPLI----VSGFSCVIVAFLLTYVVPQVANAFS 208
>gi|260222245|emb|CBA31615.1| General secretion pathway protein F [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 422
Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 8/130 (6%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ I +AL+ AE + + + ++ L + + A
Sbjct: 291 FASTLAMLAAAGVPILKALQAAAETL--SNRAMRDDALEALTLVREGAPLASALA----- 343
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ + + L + R+E A + A L P L V M +
Sbjct: 344 -RNQRFPALLSMFARLGEQTGRLPHMLDRAALQLRTEVQRRALQLATLLEPLLIVAMGLV 402
Query: 306 FLPVLILVII 315
+ +++ V++
Sbjct: 403 VMLIVLAVLM 412
>gi|88799609|ref|ZP_01115185.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
gi|88777694|gb|EAR08893.1| Type II secretory pathway, component PulF [Reinekea sp. MED297]
Length = 410
Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 46/136 (33%), Gaps = 8/136 (5%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ A + +++G+ + QAL + +G + + + + + +
Sbjct: 273 RVALGRFARPFAMMLDAGVPLLQALTVSSRTVGNAY--IGKGIENMLHGIERGESL---- 326
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ +I ++ D L + E + ++ A SL P L
Sbjct: 327 --LSTASASGMFNPLILQMIAVGEETGNVSDLLVDIADFYDQEVEYDLKRLAESLEPILL 384
Query: 300 VPMIIFFLPVLILVII 315
+ M + L + + V +
Sbjct: 385 IFMGLMVLVLALGVFL 400
>gi|320324666|gb|EFW80740.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
glycinea str. B076]
Length = 403
Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 42/146 (28%), Gaps = 11/146 (7%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ +D+AL E Q + + + ++ A
Sbjct: 66 LASVTRQLASLLSAGLPLDEALGATVEQAERQH--IIQTLGAIRTDVRSGMRLAEALAA- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + +ALI + + + L + + L + +
Sbjct: 123 ----RSRDFPDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKI----LTAFIYPGV 174
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ +++ ++ + I+
Sbjct: 175 VGLVSIAIVIFLLSYVVPQIVSAFSQ 200
>gi|312874397|ref|ZP_07734427.1| type II secretion system F domain protein [Lactobacillus iners LEAF
2052A-d]
gi|311090009|gb|EFQ48423.1| type II secretion system F domain protein [Lactobacillus iners LEAF
2052A-d]
Length = 331
Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S +Q+L + + + + ++ + +
Sbjct: 19 FLDYLQQSLNNGFSFNQSL----KILPHVWNEKVNIIQKLSSNIAQGNDIGQSLVAIGFS 74
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R Q + + ++G ++ +SL L R + + K+ P + + M++
Sbjct: 75 ------RMIAQQISFAIKHG-NLIESLSQLTKIMRLKNEQIKKIKSEMAYPAVLIVMMVS 127
Query: 306 FLPVL 310
L +
Sbjct: 128 LLIAM 132
>gi|288817362|ref|YP_003431709.1| metal dependent phosphohydrolase [Hydrogenobacter thermophilus
TK-6]
gi|288786761|dbj|BAI68508.1| metal dependent phosphohydrolase [Hydrogenobacter thermophilus
TK-6]
gi|308750969|gb|ADO44452.1| metal dependent phosphohydrolase [Hydrogenobacter thermophilus
TK-6]
Length = 578
Score = 37.1 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 10 DATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ---QITSLQKD 66
+ E+ + + S+FS + + L E +R+ V +E+ L + Q Q +
Sbjct: 1 MSIEVLLMVLLVASVFSGLVGFFLSKLLRKEESQRVPQVDLEKVELEAKHILQRAQAQAE 60
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAA 105
+ + + ++ L E + L A
Sbjct: 61 KIRQDAKEETERLIGITKEEAERYRKLAKEEAESLLLRA 99
>gi|87301567|ref|ZP_01084407.1| pili biogenesis protein [Synechococcus sp. WH 5701]
gi|87283784|gb|EAQ75738.1| pili biogenesis protein [Synechococcus sp. WH 5701]
Length = 466
Score = 37.1 bits (84), Expect = 4.1, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L V+SG+ I + L VA+ + + +++S + VA +
Sbjct: 131 FASKLSALVDSGVPIVRGLTLVAKQQK--KPIFRQALEAVASDVSQGVSLGVAMRRWPK- 187
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T A++++ G + ++L+ L ++ + K A P + + +I
Sbjct: 188 ----VFDRITIAMVEAGELGGVLDETLKRLALLLEQNAKLQNQIKGALAYPVIVL-LIAI 242
Query: 306 FLPVLILVIIGPAILSIIDTMK 327
+ + + + + P I + +
Sbjct: 243 AVFLGMTIFLIPTFADIFEQLG 264
>gi|309805401|ref|ZP_07699449.1| type II secretion system F domain protein [Lactobacillus iners
LactinV 09V1-c]
gi|308165286|gb|EFO67521.1| type II secretion system F domain protein [Lactobacillus iners
LactinV 09V1-c]
Length = 331
Score = 37.1 bits (84), Expect = 4.2, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S +Q+L + + + + ++ + +
Sbjct: 19 FLDYLQQSLNNGFSFNQSL----KILPHVWNEKVNIIQKLSSNIAQGNDIGQSLVAIGFS 74
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R Q + + ++G ++ +SL L R + + K+ P + + M++
Sbjct: 75 ------RMIAQQISFAIKHG-NLIESLSQLTKIMRLKNEQIKKIKSEMAYPAVLIVMMVS 127
Query: 306 FLPVL 310
L +
Sbjct: 128 LLIAM 132
>gi|104783252|ref|YP_609750.1| type II secretion system protein F [Pseudomonas entomophila L48]
gi|95112239|emb|CAK16966.1| putative type II secretion system protein F [Pseudomonas
entomophila L48]
Length = 400
Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 45/142 (31%), Gaps = 7/142 (4%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+RQ + + L V +GI + AL + + L ++ L+
Sbjct: 53 RRQRLSRAQLCELTRQLATLVGAGIPLVDALATLERQLR--QPALHAVLVALRGSLAEGL 110
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ AL+++ +G L L + + + A
Sbjct: 111 GLARSLARQGQ-----PFTGLYCALVEAGERSGRLGQVLARLADHLEQVQRQRHKARTAL 165
Query: 294 LGPKLTVPMIIFFLPVLILVII 315
+ P + + + + + L+ ++
Sbjct: 166 IYPAVLMGVSLAVVVGLMTFVV 187
>gi|215435046|gb|ACJ66890.1| hypothetical protein Bsb_10 [Bacillus subtilis]
Length = 255
Score = 36.7 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 29/215 (13%), Positives = 76/215 (35%), Gaps = 18/215 (8%)
Query: 110 EYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWI- 168
+ + L++ + +L + IF R+ + L+ + F PS++
Sbjct: 3 PKRVREVFRAMLLLFSGWSLLFQLVIFSLIYGAYLYISTRMLILSLVVGLIFAVPSLYYI 62
Query: 169 --SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
N KR+ ++ + + ++SG ++ AL + S L ++ +
Sbjct: 63 SYRNKKMKREIALLKDLNTYATTMTFFLQSGKNLRAALEATRPSL---SERLQNDIERVL 119
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSET-----RS 281
L + + +++ + ++ LI S G + +
Sbjct: 120 KSLD--EDSLSPDMSVFDKYKFSPIKAFNDVLIISRDEGGDKSTMFNRVNENINFAITKH 177
Query: 282 ERLMEAEKKAAS-----LGPKLTVPMIIFFLPVLI 311
+ ++ +K A +G L++P+++ L +
Sbjct: 178 DEMVRGKKIVAKQIYFIIGAMLSIPVMLSCLSTFL 212
>gi|316972253|gb|EFV55936.1| facilitated glucose transporter member 14 [Trichinella spiralis]
Length = 602
Score = 36.7 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 19/186 (10%), Positives = 52/186 (27%), Gaps = 2/186 (1%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
+ + + +I L A+ +P +K E K +
Sbjct: 258 LGSEQNWPLAFSFTAILGLALALYLPLTHESSTWLFIKRNNKEAAFRSIDFFIKDSKIAN 317
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
R + + + ++ K + N + + + ++++
Sbjct: 318 EKREQLEREHQMIRYFQR--KKKEQSKSKLYNLFHRSELLTPLKVVVVVIFAQQFTAGPA 375
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I L P + I P+ ++ + +R+ + + +
Sbjct: 376 IFSYSTDLFVTAKLSLPVAQYSTLALGIMCFFTALPASYLIEKIGRRKLYLVQLIGCFIS 435
Query: 189 LLLICV 194
+LLI +
Sbjct: 436 MLLISI 441
>gi|302870514|ref|YP_003839151.1| Type II secretion system F domain-containing protein
[Micromonospora aurantiaca ATCC 27029]
gi|302573373|gb|ADL49575.1| Type II secretion system F domain [Micromonospora aurantiaca ATCC
27029]
Length = 282
Score = 36.7 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 4/184 (2%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
+ A +L + P V + R + A +LL
Sbjct: 47 LLAAIVAGFAAAAATRWPVAALLTAAAVWALPRVLGPDREHTRAIARIEAIATWAELLRD 106
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ S ++QA+ A P+ ++ + A F
Sbjct: 107 TLSSAAGLEQAITATAPV---TPQPIRPQVQALAGAVRGGARLPDALRAFAADLADPTAD 163
Query: 253 NATQALIQSDRY-GTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLI 311
+AL Q+ Y G + L L + R + + +I ++
Sbjct: 164 LVVRALTQAAGYHGGQLSQCLTSLAATARELAGIRMRVATKRAATRTAARVITGTSVAMV 223
Query: 312 LVII 315
+I
Sbjct: 224 AGLI 227
>gi|322784640|gb|EFZ11507.1| hypothetical protein SINV_05316 [Solenopsis invicta]
Length = 244
Score = 36.7 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 280 RSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
R +R +E+KA++ + I+ +LP +L +I P
Sbjct: 22 RQQRRKRSERKASTTLGIIVGAFIVCWLPFFMLALIRPFY 61
>gi|311280235|ref|YP_003942466.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
gi|308749430|gb|ADO49182.1| general secretion pathway protein F [Enterobacter cloacae SCF1]
Length = 400
Score = 36.7 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L V + + ++ AL+ ++ + LS + ++ AF F
Sbjct: 63 LTLFTRQLSTLVNAALPLESALKAISRQSEDKK--LSALVSDIRDKVVEGHTLNEAFGQF 120
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK-KAASLGPKLTVP 301
L+ + ++G L L + M+++ +A LTV
Sbjct: 121 PR-----IFDKLYCTLVMAGEKSGALGQVLEKLADYNEQRQKMKSQLSQAMVYPITLTVV 175
Query: 302 MIIFFLPVLILVIIGPAILSIIDTMKDH 329
I ++LV + P ++ MK
Sbjct: 176 AIAVI--GILLVAVVPQVIDQFTHMKQQ 201
>gi|28868145|ref|NP_790764.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28851382|gb|AAO54459.1| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 405
Score = 36.7 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 33/257 (12%), Positives = 77/257 (29%), Gaps = 28/257 (10%)
Query: 94 VDENIVNKLRA-AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+ + L A ++ + + + + +++ + + G + P + A
Sbjct: 142 QAGALESLLDRVASYKEKTEKLKAKIKKAMTYPAAVLIVAVIVSGILLIKVVPQFQSIFA 201
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
F + +S++VQK I A+ + +L + + AL R +
Sbjct: 202 SFGADLPAFTLMVIGLSDIVQKWWLIIVIAFFATIFMLKRAYKKSQNFRDALDRFLLKLP 261
Query: 213 GQSV-----PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTS 267
++ + A ++ T +NA + Q G
Sbjct: 262 IIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFKNAVNRVKQDVSTGMQ 321
Query: 268 IGDSLRVLV-------------------SETRSERLMEAEKKAASLG---PKLTVPMIIF 305
+ S+R + E++ ++ L PMI+
Sbjct: 322 LNFSMRSTGVFPSLAIQMTSIGEESGALDAMLDKVATYYEEEVDNMVDNLTSLMEPMIMA 381
Query: 306 FLPVLILVIIGPAILSI 322
L V++ ++ L I
Sbjct: 382 ILGVIVGGLVIAMYLPI 398
>gi|95931257|ref|ZP_01313976.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM
684]
gi|95132693|gb|EAT14373.1| General secretion pathway protein F [Desulfuromonas acetoxidans DSM
684]
Length = 404
Score = 36.7 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 21/155 (13%), Positives = 52/155 (33%), Gaps = 8/155 (5%)
Query: 174 KRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLP 233
+R LL +++G+ +D+AL+ V E + + + E+
Sbjct: 58 RRSRLPVNDLATTTRLLATLLQAGVPLDEALQSVVEQVE--NPAQARLYTQVREEVRQGS 115
Query: 234 NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAAS 293
+ A + Q +++ ++ L L + + + +A
Sbjct: 116 SLFQALAEQGRSFP-----DLYQRMVEVGENSGTLDQVLLRLADFLEEQARLRSRTVSAL 170
Query: 294 LGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKD 328
P L + + L + +L + P I ++ +
Sbjct: 171 AYPVLMAIVGVGVL-LFLLSFVVPKITRMLTDLGQ 204
>gi|160893680|ref|ZP_02074464.1| hypothetical protein CLOL250_01234 [Clostridium sp. L2-50]
gi|156864665|gb|EDO58096.1| hypothetical protein CLOL250_01234 [Clostridium sp. L2-50]
Length = 309
Score = 36.7 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 35/300 (11%), Positives = 80/300 (26%), Gaps = 45/300 (15%)
Query: 9 FDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSA 68
A +L V +F L+ ++ + T
Sbjct: 1 MTAIQLLACAGMIVGVFLLL-------------------------EMKPVEFTDSLFGFL 35
Query: 69 SSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFL 128
+ R+ + +K + + N L+ G + +S
Sbjct: 36 LNPKRSLREDIRESSGRKKSGILRRELKEAQNILQMTGRGNRFS---------------F 80
Query: 129 ILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALD 188
I + ++ P ++ + + AL
Sbjct: 81 ICAVALALFCAGGSIAILLGNFFLAPVMAVGFLFLPFWYVKLTANHYKRDVSAELETALS 140
Query: 189 LLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSF-LPNRQVAFENFYNRTQ 247
++ I A+ + + P+S + ++ P+ Q A R
Sbjct: 141 VITTAYLRTEDIVTAVEENTAYL---NPPVSRVFQDFLIQIKMVNPDVQAALRILRGRID 197
Query: 248 MDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFL 307
+ R A+ S+ +L +VS+ R + AE + P+ +++ F+
Sbjct: 198 NEVFREWCDAVSDCQHD-RSLKTTLPPIVSKLSDMRNVNAELEYMIAEPRKEFMIMVVFV 256
>gi|126176022|ref|YP_001052171.1| type II secretion system protein [Shewanella baltica OS155]
gi|125999227|gb|ABN63302.1| type II secretion system protein [Shewanella baltica OS155]
Length = 406
Score = 36.7 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 12/138 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ SGI I +A+ ++E Q + + + +L+ +
Sbjct: 66 LQIFTRQMYSLTRSGIPILRAIAGLSETAHSQR--MKDALNDISEQLTAGRPLSSSMNQ- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + +++ + D+ L E+ K+A + PM
Sbjct: 123 ----HPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSA-----MRYPM 173
Query: 303 IIFFLPVLILVIIGPAIL 320
+ L +VI+ ++
Sbjct: 174 FVLIAIALAMVILNIMVI 191
>gi|283795700|ref|ZP_06344853.1| sensor histidine kinase [Clostridium sp. M62/1]
gi|291077375|gb|EFE14739.1| sensor histidine kinase [Clostridium sp. M62/1]
Length = 347
Score = 36.7 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 33/99 (33%), Gaps = 1/99 (1%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
+ ++ + ++ V +FL+ +I + L + + F +
Sbjct: 1 MDKKGNVYLFCRMQAVTAALFLLSALILAVSFLSGLSEGRPVWLWTAGFAVLAAFGWINY 60
Query: 167 WISNLVQKRQ-SSIKRAWPDALDLLLICVESGISIDQAL 204
+R +++ + L +G++ +A+
Sbjct: 61 IWVIRPYRRMEKTMRLFLDGYITELSELQGAGMTHAEAM 99
>gi|228912296|ref|ZP_04075996.1| hypothetical protein bthur0013_63720 [Bacillus thuringiensis IBL
200]
gi|228847340|gb|EEM92294.1| hypothetical protein bthur0013_63720 [Bacillus thuringiensis IBL
200]
Length = 253
Score = 36.7 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 13/203 (6%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
I+ + + + + G V + + V+ Q +
Sbjct: 22 WSIVGWLAFLFIMHTGYVYIILKDVPISIIAGSFGSVIWFFAFTVANKKVKVYQFQLNEL 81
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
A + + ++SG ++ +L + + + +E+ T+ +L +
Sbjct: 82 LKYATN-MTFFMQSGKNLYYSLIETKKTLDIS---IQKEIDKTLVKLE---GEAKLDTHH 134
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + + + L D G S + ++ E + G T+ M
Sbjct: 135 FEKYDFPALNQFHKILKIKDEKGGSAREMFGPVLKSMNFEISKRDDLHRKKKGKAKTIYM 194
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
II + + P +L ++ +
Sbjct: 195 IIGMVGAM------PVMLDLMTS 211
>gi|330952551|gb|EGH52811.1| type II secretion system protein [Pseudomonas syringae Cit 7]
Length = 363
Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 50/167 (29%), Gaps = 8/167 (4%)
Query: 146 FQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALR 205
+ + L+ F P + L + + + + I +AL
Sbjct: 190 VVIVLIVTSLVTLPYFRGPWRTRFERLPPWSIYKALHGSTFLLNIAVMLRANIDPLEALD 249
Query: 206 RVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYG 265
+ G + L E + + N A + +R L +
Sbjct: 250 TLKR---GANPWLRERLEAAHYGVRMGKNFGEALDLSGHRFPDHEAIQFLIVLSTTH--- 303
Query: 266 TSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
S ++ L + E+ A SL +++ +I + ++++
Sbjct: 304 -SFSAAVHRYSLRWLEISLKQVERYAKSLS-LVSMVLIGLLMILVMV 348
>gi|163816763|ref|ZP_02208126.1| hypothetical protein COPEUT_02953 [Coprococcus eutactus ATCC 27759]
gi|158448020|gb|EDP25015.1| hypothetical protein COPEUT_02953 [Coprococcus eutactus ATCC 27759]
Length = 403
Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 49/143 (34%), Gaps = 13/143 (9%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ + SGIS+ A+ +VA+ + + + + ++ ++S ++
Sbjct: 267 CSRFARTMSTLMASGISMIDAVEQVAKMMD--NKIIRDGLMDAKVQVSKGVPLSKPLKDM 324
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + A+ + I + L + E + A + P+
Sbjct: 325 ------EMLPPMLSAMTKIGEETGDIEEMLSKVADYYDEEV-----EAATNALTSAMEPI 373
Query: 303 IIFFLPVLILVIIGPAILSIIDT 325
I+ L ++ +I+ I+
Sbjct: 374 IMVILACIVGMIVAAVYGPIMSM 396
>gi|54022574|ref|YP_116816.1| hypothetical protein nfa6070 [Nocardia farcinica IFM 10152]
gi|54014082|dbj|BAD55452.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 197
Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 14 LAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
+ ++ AV+ + + G+L++R A ER R +Q+ + A++
Sbjct: 34 IGWSVALAVATVLAVVFGALWWSARGDLDERDARAADER---RAEQVATDYAVGAATVNY 90
Query: 74 TRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYS 112
+ + + + KL +++
Sbjct: 91 QDVTAWVGKLKANTTPQLATKFDATAPKLEQILVPLKWT 129
>gi|220933414|ref|YP_002512313.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
gi|219994724|gb|ACL71326.1| general secretion pathway protein F [Thioalkalivibrio sp. HL-EbGR7]
Length = 404
Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 16/190 (8%)
Query: 134 WIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSI--------KRAWPD 185
I D L +Y + +G V+ VG+ + +
Sbjct: 213 LIAVSDGLRDYGLWMLLGLVLAGMAVGWLLKKPGPRTAWHRVILRMPLAGRMARGMNTAR 272
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L I SG+S+ +ALR A+ + P+ + + + A E
Sbjct: 273 FARTLSILSASGVSVLEALRISAQVVASL--PMRDAIQTVAQRVREGSGIGNALERTGY- 329
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
T LI+S S+ L E L P L + M +
Sbjct: 330 -----FPPITVHLIKSGEASGSLDAMLERAAVNQERELEARIGMIMGILEPVLILVMGLV 384
Query: 306 FLPVLILVII 315
L +++ +++
Sbjct: 385 VLVIVLAILL 394
>gi|150019029|ref|YP_001311283.1| type II secretion system protein [Clostridium beijerinckii NCIMB
8052]
gi|149905494|gb|ABR36327.1| type II secretion system protein [Clostridium beijerinckii NCIMB
8052]
Length = 400
Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 17/215 (7%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV--------GFCAP 164
+ + + + + Y + + + + + G
Sbjct: 189 MPTFTEIFEQSGTVLPWSTKFLLSLSSGIKNYWYIIIIVIGLAGFLINIFLKSDEGIYFS 248
Query: 165 SVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
S L ++ + L + SG+ + +AL+ VA+ G + + E+L
Sbjct: 249 SNLKLKLPVLKKLNQMIIVSRFTRTLSTLIASGLPLVEALKIVADVAGNKIAEI--ELLK 306
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
++ + + + ++++ S+ D L E
Sbjct: 307 IRDKVVRGESLYTSMR------ESGIFPEMLYSMVKIGEETGSLDDILNKTADFYDEELD 360
Query: 285 MEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAI 319
+ A + P L V M + + ++ I+ P
Sbjct: 361 SIIQSSVALMEPILIVVMGL-IIGFMVASIMIPMF 394
>gi|167970802|ref|ZP_02553079.1| putative conserved alanine rich membrane protein [Mycobacterium
tuberculosis H37Ra]
gi|215413582|ref|ZP_03422250.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
94_M4241A]
gi|215424897|ref|ZP_03422816.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
T92]
gi|219559728|ref|ZP_03538804.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
T17]
gi|254233153|ref|ZP_04926479.1| hypothetical protein TBCG_03579 [Mycobacterium tuberculosis C]
gi|260184574|ref|ZP_05762048.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
CPHL_A]
gi|260198697|ref|ZP_05766188.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
T46]
gi|260202855|ref|ZP_05770346.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
K85]
gi|294992923|ref|ZP_06798614.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
210]
gi|297636333|ref|ZP_06954113.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
KZN 4207]
gi|297733326|ref|ZP_06962444.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
KZN R506]
gi|313660658|ref|ZP_07817538.1| putative alanine rich membrane protein [Mycobacterium tuberculosis
KZN V2475]
gi|124602946|gb|EAY61221.1| hypothetical protein TBCG_03579 [Mycobacterium tuberculosis C]
Length = 200
Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN---FY 243
LD+L +C+ +G+++ A L+ + L+ + +A+
Sbjct: 55 LDVLAVCLAAGMAVS---TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLP 111
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + +S G ++ D + L + R + A A G + P+
Sbjct: 112 PGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLG 171
Query: 304 IFFLPVLILVIIGPAILSI 322
+ FLP + V I P ++ +
Sbjct: 172 LCFLPAFLCVGIVPLVVGL 190
>gi|171912199|ref|ZP_02927669.1| type II secretory pathway component [Verrucomicrobium spinosum DSM
4136]
Length = 424
Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 8/110 (7%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
++ + L + +G+ ++ AL + L+ + ++ A
Sbjct: 83 EKLVIQFTEELSDLLGAGLQLEPALHSLENRNKSSLQVLAGRLR---EKVRDGTPFSAAL 139
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK 289
+ L+ + G S+ LR + A+
Sbjct: 140 SQVC-----ASFGDLYCNLVAAGEAGGSLAAILRRQARYMNQMAALRAKV 184
>gi|322806159|emb|CBZ03727.1| late competence protein ComGB, access of DNA to ComEA [Clostridium
botulinum H04402 065]
Length = 396
Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 25/201 (12%), Positives = 69/201 (34%), Gaps = 16/201 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSSIKRAW 183
++ I +F + + V Y + + ++ Q
Sbjct: 204 LGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKIKYAIDNLKIKTPILGQIYKNIFI 263
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + + + ++SGI I+++L+ + E + E + + + ++
Sbjct: 264 CNFSNSMNLMIKSGIPINKSLKLLEEV--TDNYIFKENIKNLNKNIKDGKSISISLNKCG 321
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + + G + +S + + E+K +G KL P I
Sbjct: 322 FSNKI-----LLSMVHIGEESG-RLEESFYSVYKIL----KKDLEEK-LKVGVKLIEPTI 370
Query: 304 IFFLPVLILVIIGPAILSIID 324
I F+ ++I +I + +++
Sbjct: 371 IIFMSLIICIIFIYVFIPMMN 391
>gi|300715324|ref|YP_003740127.1| outer membrane protein export (MTB) system (type II secretion
system) [Erwinia billingiae Eb661]
gi|299061160|emb|CAX58267.1| outer membrane protein export (MTB) system (Type II secretion
system) [Erwinia billingiae Eb661]
Length = 399
Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 19/224 (8%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLV 172
L + V I L Y FQL VG +L +
Sbjct: 186 LPEFMSVYQAFNAPLPAFTAGVIALSGGLQHYGFQLLVGLTVLAFSWRWQTKRSPEWQKR 245
Query: 173 QKR---------QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
++R + L + ++G+++ Q+L+ V + + E +
Sbjct: 246 EQRWLLALPLTGKLYQGGLLSRIFMTLALTQQAGLTLLQSLQAVEKTLTSLLW--REAIQ 303
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ A + Q LI+ S+ L L
Sbjct: 304 QLQQHIATGYPLYQALK------QHPLFSPVCYQLIKVGEESGSLDSMLVRLGELHEDMT 357
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMK 327
A+ AA+L P + V I L +++ + I ++ D +
Sbjct: 358 HELADNLAAALEPMMMV--ITGVLVGALVIAMYLPIFNLGDALG 399
>gi|95929090|ref|ZP_01311835.1| type II secretion system protein [Desulfuromonas acetoxidans DSM
684]
gi|95134991|gb|EAT16645.1| type II secretion system protein [Desulfuromonas acetoxidans DSM
684]
Length = 410
Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 7/145 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
L ++ + + SG+ + ++L + E Q+ + + + I L
Sbjct: 61 LKRRPKKVRLDDLILFCRQMYSLTRSGVPMMRSLYGLIES--SQNPTMQQALRGVIENLE 118
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ A F ++Q ++ +S R L E+L + K
Sbjct: 119 SGRDLSGAMAAFPEVFPN-----LMTRMVQVGESSGNLEESFRQLGEYLEFEKLTREQIK 173
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
AA P + I + +L L +I
Sbjct: 174 AALRYPTFVIIAIGVAMTILSLFVI 198
>gi|290243116|ref|YP_003494786.1| Type II secretion system F domain protein [Thioalkalivibrio sp.
K90mix]
gi|288945621|gb|ADC73319.1| Type II secretion system F domain protein [Thioalkalivibrio sp.
K90mix]
Length = 358
Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 9/155 (5%)
Query: 169 SNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAE 228
V + + D + L E+GI AL+ V + + PL+ I
Sbjct: 9 YRRVMAKLAFGASKRADMYEDLAAFQEAGIPPFDALKSVNDVHRKRRNPLAYMTDEWIRV 68
Query: 229 LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAE 288
+ A + +A A+I S + ++L + TR+ M AE
Sbjct: 69 MEGGGTLADAM--------VPWADSAEVAMIASGDRSGELQEALVEVSKLTRARHEMMAE 120
Query: 289 KKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
A L + + +F L I + I P ++
Sbjct: 121 -AAQKLTMPMVMIAALFGLVYYIAITIVPTAQDLL 154
>gi|297537794|ref|YP_003673563.1| Type II secretion system F domain-containing protein [Methylotenera
sp. 301]
gi|297257141|gb|ADI28986.1| Type II secretion system F domain protein [Methylotenera sp. 301]
Length = 405
Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats.
Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 27/209 (12%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQ 176
+ V+ I I IW F Y Q + +IL V P + R+
Sbjct: 220 IFVQWWWAIFGSIGFGIWFFFYTWKRSLSMQATMDRLILKVPV--FGPLI--------RK 269
Query: 177 SSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQ 236
++I R L +G+ + +AL VA + + +E+S +
Sbjct: 270 ATIARW----ARTLATMFSAGVPLVEALDSVA--GASGNRVYYDATKKVQSEISTGTSLT 323
Query: 237 VAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
VA + D N + ++ L + +E + A+
Sbjct: 324 VAMQ------NTDVFPNMVLQMTAIGEESGALDAMLSKVADFFEAEVDDAVDALAS---- 373
Query: 297 KLTVPMIIFFLPVLILVIIGPAILSIIDT 325
L P+I+ L VLI ++ + I
Sbjct: 374 -LMEPVIMVVLGVLIGGLVIAMYMPIFKM 401
>gi|26987784|ref|NP_743209.1| general secretion pathway protein F [Pseudomonas putida KT2440]
gi|24982479|gb|AAN66673.1|AE016295_6 type II secretion pathway protein XcpS [Pseudomonas putida KT2440]
Length = 400
Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 7/145 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+RQ + + L +GI + AL + + L ++ L+
Sbjct: 50 RQPRRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLR--QPALHSVLVALRGSLA 107
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ AL+++ + L L + + + +
Sbjct: 108 EGLGLARSLARQG-----APFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKAR 162
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
A + P + + + + + L+ ++
Sbjct: 163 TALIYPAVLMGVSLAVVIGLMTFVV 187
>gi|330719879|gb|EGG98361.1| MSHA biogenesis protein MshG [gamma proteobacterium IMCC2047]
Length = 151
Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 16/148 (10%), Positives = 45/148 (30%), Gaps = 14/148 (9%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ +G+ I QAL+ VA +G +++ + + + +
Sbjct: 14 RINLGRFARTYATVTNAGVPIIQALKVVANAVGNAY--VADRIAKMSSSIERGESFSR-- 69
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
T +I ++ + L + E + +K + P
Sbjct: 70 ----TATNSGLFSPLVLQMIAVGEETGNMDELLDEVADFYEQEVDYDLKKLGDRIEP--- 122
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
I+ + +++I+ + + +
Sbjct: 123 ---ILLIVVAGMVLILALGVFLPMWDLS 147
>gi|319949003|ref|ZP_08023102.1| hypothetical protein ES5_06367 [Dietzia cinnamea P4]
gi|319437331|gb|EFV92352.1| hypothetical protein ES5_06367 [Dietzia cinnamea P4]
Length = 85
Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+ L+++ G S+ +L S RSE A +A + P+ + FLP
Sbjct: 4 LAPVAPVLVRAGDGGGSVRSALEHAASRMRSEADAAATARAERASVLVAGPLGLCFLPAF 63
Query: 311 ILVIIGPAILSIIDTM 326
+ + + P ++ + D M
Sbjct: 64 VCLGVLPVVVGLADGM 79
>gi|313291990|gb|ADR51188.1| general secretion pathway protein F [Aeromonas veronii]
Length = 406
Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++AL+ VAE L + +++ +
Sbjct: 60 RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAH--LRSLVATVRSKVVEGYS 117
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M + A
Sbjct: 118 LADSLGAFPH-----VFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQA-- 170
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAIL 320
+ P+++ + + ++ I+ A++
Sbjct: 171 ---MIYPIVLTCVAIGVISILLTAVV 193
>gi|18312169|ref|NP_558836.1| hypothetical protein PAE0772 [Pyrobaculum aerophilum str. IM2]
gi|18159604|gb|AAL63018.1| hypothetical protein PAE0772 [Pyrobaculum aerophilum str. IM2]
Length = 509
Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 26/204 (12%), Positives = 63/204 (30%), Gaps = 4/204 (1%)
Query: 126 IFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPD 185
+F +LG+ I L ++ G + F P + +S + +
Sbjct: 29 LFTLLGLGIISAGAAFLLLGLFPLGPMLLGAGGLVFFLPKLVVSIRAGSIRELLSTEMVF 88
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L+ + + ++ + R+ + + A + +
Sbjct: 89 FTALVQMAFATKAHLNLLIERMTR-YRELPGVRTLAIAAWNNAKMIGMEPLDAMKRAVEK 147
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLR---VLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +L S R G I L + + + + + SL L V +
Sbjct: 148 LAPQKLVYRFNSLYTSLRIGEDIVAKLSLYMDMDTVEFATAMQRRMDRLTSLIASLVVGL 207
Query: 303 IIFFLPVLILVIIGPAILSIIDTM 326
+ + +++ PA+L I+ +
Sbjct: 208 AMLSVTAVVIGRGNPAMLIIMGGL 231
>gi|315446284|ref|YP_004079163.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
gi|315264587|gb|ADU01329.1| Flp pilus assembly protein TadB [Mycobacterium sp. Spyr1]
Length = 261
Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats.
Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 19/219 (8%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+LRA R + L L I L + + L +
Sbjct: 16 PTDARLRAPVLRRTSTPRRRLPGPLPAAIACLTVAAVHTPTTAAALGLLLATLGARRRVT 75
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
++S A DALD+L+ + G A+ + G+
Sbjct: 76 RAHRR--------------RTSEATALQDALDVLVGELRVGAHPVAAITVAGHEARGR-- 119
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD-CVRNATQALIQSDRYGTSIGDSLRVL 275
++E + A + R+ + +G +I +R
Sbjct: 120 -IAESLNAVAARALLGADVPAGLRAEGRRSPSPGHWDRLAVCWQLAQTHGLAIAALMRAA 178
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ ++ G + T +I+ LPVL +++
Sbjct: 179 QRDITERERFRGRVESGMAGARATA-VILAGLPVLGVLL 216
>gi|259501490|ref|ZP_05744392.1| competence protein [Lactobacillus iners DSM 13335]
gi|302191536|ref|ZP_07267790.1| Type II secretory pathway/competence component [Lactobacillus iners
AB-1]
gi|312871496|ref|ZP_07731590.1| type II secretion system F domain protein [Lactobacillus iners LEAF
3008A-a]
gi|325913082|ref|ZP_08175453.1| type II secretion system protein F domain protein [Lactobacillus
iners UPII 60-B]
gi|259167008|gb|EEW51503.1| competence protein [Lactobacillus iners DSM 13335]
gi|311093016|gb|EFQ51366.1| type II secretion system F domain protein [Lactobacillus iners LEAF
3008A-a]
gi|325477638|gb|EGC80779.1| type II secretion system protein F domain protein [Lactobacillus
iners UPII 60-B]
Length = 331
Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S +Q+L + + + + ++ + +
Sbjct: 19 FLDYLQQSLNNGFSFNQSL----KILPHVWNEKVNIIKKLSSNIAQGNDIGQSLVAIGFS 74
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R Q + + ++G ++ +SL L R + + K+ P + + M++
Sbjct: 75 ------RMIAQQISFAIKHG-NLIESLSQLTKIMRLKNEQIKKIKSEMAYPAVLIVMMVS 127
Query: 306 FLPVL 310
L +
Sbjct: 128 LLIAM 132
>gi|89901674|ref|YP_524145.1| type II secretion system protein [Rhodoferax ferrireducens T118]
gi|89346411|gb|ABD70614.1| type II secretion system protein [Rhodoferax ferrireducens T118]
Length = 405
Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 29/141 (20%)
Query: 215 SVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIG----- 269
L+ + AF+ V + GTS+
Sbjct: 65 PKDLAIFTRQLATMMKAGVPLLQAFDIVGRGNPNPSVTKLLNDIRTDVETGTSLSVAFRK 124
Query: 270 -----------------------DSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFF 306
L L ++++ K+A + P ++V ++ F
Sbjct: 125 FPLYFDNLYCNLIEAGESAGILDQLLDRLAVYMEKTEAIKSKIKSALMYP-ISVLIVAFV 183
Query: 307 LPVLILVIIGPAILSIIDTMK 327
+ +I++ + PA +
Sbjct: 184 VTAVIMIFVVPAFKEVFSNFG 204
>gi|38232935|ref|NP_938702.1| hypothetical protein DIP0314 [Corynebacterium diphtheriae NCTC
13129]
gi|38199193|emb|CAE48818.1| Putative membrane protein [Corynebacterium diphtheriae]
Length = 248
Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 3/196 (1%)
Query: 133 IWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLI 192
I LL + +I + + + + + A AL ++
Sbjct: 27 IVSLAALVLLPIMLVIWEPVMIAAVLITATVIRTVMGIRRNRADRTTQEALSSALGIIAG 86
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+ G+ AL RVA++ PL+ + ++ + + ++
Sbjct: 87 DLRCGLGTWDALARVAQE-PTTHAPLAAACAAAARRARAGGSAADVLADYSH--SIAGLQ 143
Query: 253 NATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLIL 312
+ S+ +G S+ + L +E KAA G + T ++ +
Sbjct: 144 RVARVWKLSETHGISVAPLVEQLHNEIDDRLRHRDRTKAALQGAQATAIVLSLLPLFGLG 203
Query: 313 VIIGPAILSIIDTMKD 328
+ IG + + +
Sbjct: 204 MGIGLGAPVLAFLLNN 219
>gi|312872427|ref|ZP_07732496.1| type II secretion system F domain protein [Lactobacillus iners LEAF
2062A-h1]
gi|311092009|gb|EFQ50384.1| type II secretion system F domain protein [Lactobacillus iners LEAF
2062A-h1]
Length = 331
Score = 36.7 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S +Q+L + + + + ++ + +
Sbjct: 19 FLDYLQQSLNNGFSFNQSL----KILPHVWNEKVNIIQKLSSNIAQGNDIGQSLVAIGFS 74
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R Q + + ++G ++ +SL L R + + K+ P + + M++
Sbjct: 75 ------RMIAQQISFAIKHG-NLIESLSQLTKIMRLKNEQIKKIKSEMAYPAVLIVMMVS 127
Query: 306 FLPVL 310
L +
Sbjct: 128 LLIAM 132
>gi|187930467|ref|YP_001900954.1| general secretion pathway protein F [Ralstonia pickettii 12J]
gi|187727357|gb|ACD28522.1| general secretion pathway protein F [Ralstonia pickettii 12J]
Length = 403
Score = 36.7 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ +D+AL +A+ + E + AE+ + VA
Sbjct: 69 VTRQLASLLVAGLPLDEALAALADQAERAY--VGELLAAIRAEVLGGSSLSVALAQHPK- 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +AL+ + + ++G L L S + ++ K A P + V ++ F
Sbjct: 126 ----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAI-VTVVAF 180
Query: 306 FLPVLILVIIGPAILSI 322
+ + +L + P ++S+
Sbjct: 181 AIVIFLLSYVVPQVVSV 197
>gi|217076182|ref|YP_002333898.1| type II secretion system protein [Thermosipho africanus TCF52B]
gi|217036035|gb|ACJ74557.1| type II secretion system protein [Thermosipho africanus TCF52B]
Length = 398
Score = 36.3 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 11/137 (8%)
Query: 160 GFCAPSVWISNLVQKRQSSIK----RAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
G+ + ++ V+K +I + L V++G+ + +A+ ++ S
Sbjct: 35 GYIVIDIKEASKVKKFNFNIFSIRLKDIVFFTRQLETMVKAGLRLREAIYILSNQ-EIFS 93
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
++ ++EL + AF+ + +I++ G + ++L L
Sbjct: 94 KRFRSILVNIVSELDVGTSLSEAFKK------QKAFDDVFINMIKAGEEGGVLEETLEKL 147
Query: 276 VSETRSERLMEAEKKAA 292
S + + K+A
Sbjct: 148 ASYYENLNRTNQQVKSA 164
>gi|34556964|ref|NP_906779.1| MSHA biogenesis protein MshG [Wolinella succinogenes DSM 1740]
gi|34482679|emb|CAE09679.1| MSHA BIOGENESIS PROTEIN MSHG [Wolinella succinogenes]
Length = 415
Score = 36.3 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 14/149 (9%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
A + L + +++GIS+++AL + + L E+ + A
Sbjct: 275 FLHAMNQYVSTLSLLLKAGISLEEALESGS--GMTGNEHLREKFEGVSDAIRRGVGLTEA 332
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
F + T +I + + L V + + + +A + P
Sbjct: 333 FRETHL------FEPTTLQMINTGEQSGDLDQMLGVAANYYKMRYDNIIDNLSAYIEP-- 384
Query: 299 TVPMIIFFLPVLILVIIGPAILSIIDTMK 327
I+ +++++ I + +
Sbjct: 385 ----ILTAFIAGMVLLLALGIFMPMWDLA 409
>gi|330830592|ref|YP_004393544.1| general secretion pathway protein F [Aeromonas veronii B565]
gi|328805728|gb|AEB50927.1| General secretion pathway protein F [Aeromonas veronii B565]
Length = 406
Score = 36.3 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+ + L V +G++I++AL+ VAE L + +++ +
Sbjct: 60 RRGASTAELALITRQLATLVGAGLTIEEALKAVAEQCEKAH--LRSLVATVRSKVVEGYS 117
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ F + ++++ + + L L T + M + A
Sbjct: 118 LADSLGAFPH-----VFDQLFRSMVAAGEKSGHLEKVLNRLADYTEQRQHMRTKLLQA-- 170
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAIL 320
+ P+++ + + ++ I+ A++
Sbjct: 171 ---MIYPIVLTCVAIGVISILLTAVV 193
>gi|284162483|ref|YP_003401106.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
gi|284012480|gb|ADB58433.1| type II secretion system protein [Archaeoglobus profundus DSM 5631]
Length = 542
Score = 36.3 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 6/210 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGF-CAPS 165
+S + I + ++++PI F ++ + + E + + G P
Sbjct: 221 IKSVEQMIIARLQKVLLPISFFVIIMFSVVPTIFNPEAKLLGIDMKGLGLVLSGIILLPL 280
Query: 166 VWISNLVQKRQSSIKRAWPDALDLL-LICVESGISIDQALRRVAEDIGGQSVPLSEEMLL 224
+ K+ + A+ + + I +G+S+ +AL R+ + L + +
Sbjct: 281 GIFGWIDDKKITKRDEAYTAFIRSVGSIVAGAGVSVAEALSRIDQK---NLSELKDLVTK 337
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
LS + ++++E F + + T+ + + G ++ S L
Sbjct: 338 LYRRLSMGLDHRLSWEKFMGESGSYLIHKLTKIFVDAADMGGDTDAIGEIVSSSNLEMVL 397
Query: 285 MEAEK-KAASLGPKLTVPMIIFFLPVLILV 313
+ ++ AS L +P+ I + +L+ +
Sbjct: 398 LRLKRGLIASGFVNLVIPLHISMVGLLLFI 427
>gi|257791237|ref|YP_003181843.1| ABC transporter-like protein [Eggerthella lenta DSM 2243]
gi|257475134|gb|ACV55454.1| ABC transporter related [Eggerthella lenta DSM 2243]
Length = 1228
Score = 36.3 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 26/286 (9%), Positives = 74/286 (25%), Gaps = 28/286 (9%)
Query: 8 LFDATELAVAITTAVSIFSLIY---------AVVIPSLGSGELEKRMKSVAVEREILRKQ 58
L + V+ F+ + A + S+ + L + R +K
Sbjct: 662 TLSDLALMIPFVCTVAAFAALVGTLAGEPFDAAALWSIFAVGLAGMVVVFVASRNDYKKT 721
Query: 59 QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILLV 118
+ + + + + L ++ ++ +++ + + ++
Sbjct: 722 YVAAYTESEGTRLRLADHLRKLP-----MSFFNRRDTTDVADRIM-----GDVTAQESML 771
Query: 119 VRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW---ISNLVQKR 175
+ +I I+ + I ++ V + + + +
Sbjct: 772 SSTLPQLIAGIVSTVVICAMLAFFDWRLACCVMVTLPLSAGVIALSRRHQSRLFERQNRV 831
Query: 176 QSSIKRAWPDALD---LLLICVESGIS---IDQALRRVAEDIGGQSVPLSEEMLLTIAEL 229
+ D L+ + C G ++QA+ + + + + L A L
Sbjct: 832 RLDALACVQDYLEGIKDMRACRAVGKDSAAMEQAMLELKRVTMRVELAVDVSVSLASAIL 891
Query: 230 SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ L+ R I + L
Sbjct: 892 RSGVGLTACVGAVLLASGGVDFMVLLMFLLIVSRVYGPILALVSQL 937
>gi|188532947|ref|YP_001906744.1| type IV pilin biogenesis protein [Erwinia tasmaniensis Et1/99]
gi|188027989|emb|CAO95846.1| Putative outer membrane protein export (MTB) system [Erwinia
tasmaniensis Et1/99]
Length = 399
Score = 36.3 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 46/137 (33%), Gaps = 9/137 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+++ +L+ + + + E + ++ A ++
Sbjct: 265 LSQIFTTLSLTQRAGLTLLHSLQAIEKTLTPLLW--REAIRQLQQHIAAGYPLHQALKS- 321
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
LI+ S+ L L + + A+ AA+L P + + +
Sbjct: 322 -----HPLFTPLCYQLIKVGEESGSLDTLLTRLAMWHKQQTHQLADTLAATLEPLMMI-V 375
Query: 303 IIFFLPVLILVIIGPAI 319
I + L++ + P
Sbjct: 376 IGGIVGTLVVAMYLPVF 392
>gi|70732017|ref|YP_261762.1| integral membrane protein [Pseudomonas fluorescens Pf-5]
gi|68346316|gb|AAY93922.1| integral membrane protein, putative [Pseudomonas fluorescens Pf-5]
Length = 388
Score = 36.3 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 64/219 (29%), Gaps = 14/219 (6%)
Query: 112 SLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNL 171
+ + LV F ILG + I L P + +
Sbjct: 176 PALLYHLSNLVSHYGFFILGAVVIVILTSTLTLPVFCGLALEPTSPTWKIQLSKIMQGAR 235
Query: 172 VQK-----RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++ + L + + + SGI+ AL + G L E +
Sbjct: 236 LKMESAPPWSTYKVLHGSIFLMNMSVMLRSGINQLDALTILKR---GAPPWLRERLDAIH 292
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
+ N A + +R + + R G +S+ S R
Sbjct: 293 YGVRSGKNFGQALKLAGHRF--PDAMAIHYLEVLAVRKG--FAESMERFAS--RWLEQTL 346
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ +A S + + L +L++V I ++D+
Sbjct: 347 RKVEATSKFLIAFSSVCMGVLMILVVVGIFQMARGVMDS 385
>gi|92112920|ref|YP_572848.1| hypothetical protein Csal_0792 [Chromohalobacter salexigens DSM
3043]
gi|91796010|gb|ABE58149.1| hypothetical protein Csal_0792 [Chromohalobacter salexigens DSM
3043]
Length = 567
Score = 36.3 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 73/268 (27%), Gaps = 15/268 (5%)
Query: 23 SIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRN 82
+FS + +VV L +R+ + + + + L+ S L
Sbjct: 292 GVFSEVASVVNDRTHPDSLLERLTAAIKRVARRVQGKFKDALGEFFKGGLQGFISNLLTF 351
Query: 83 FVKKLNLKAILVDENIVNKLRA---AGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYD 139
+ L + V I + A + + + I + G+ +
Sbjct: 352 LINNLITTSAKVVTIIREGIHQLWDALKMMLWPPEGMSHEARLRAIAKSVAGLFTLGAGM 411
Query: 140 KLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSS-------IKRAWPDALDLLLI 192
E +G L GF +P + I L
Sbjct: 412 LWEESLNAFLLGIPPLAPIAGFISPVLTGLLTGLATALLMYAIDSIIDWMLDKGTACLNS 471
Query: 193 CVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVR 252
+++ +R+ AE I Q + S + Q A E + +
Sbjct: 472 QIDALEGYQSLMRQTAERIDVQLRLSASYRASLGLNDSISHDWQEAGEALADANRTAEAT 531
Query: 253 NAT-----QALIQSDRYGTSIGDSLRVL 275
AT +L + R + +L L
Sbjct: 532 RATHDDTRTSLDNATRTQQDVNAALTRL 559
>gi|329919944|ref|ZP_08276846.1| type II secretion system protein F domain protein [Lactobacillus
iners SPIN 1401G]
gi|328936831|gb|EGG33267.1| type II secretion system protein F domain protein [Lactobacillus
iners SPIN 1401G]
Length = 331
Score = 36.3 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S +Q+L + + + + ++ + +
Sbjct: 19 FLDYLQQSLNNGFSFNQSL----KILPHVWNEKVNIIKKLSSNIAQGNDIGQSLVAIGFS 74
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R Q + + ++G ++ +SL L R + + K+ P + + M++
Sbjct: 75 ------RMIAQQISFAIKHG-NLIESLSQLTKIMRLKNEQIKKIKSEMAYPAVLIVMMVS 127
Query: 306 FLPVL 310
L +
Sbjct: 128 LLIAM 132
>gi|150016556|ref|YP_001308810.1| type II secretion system protein [Clostridium beijerinckii NCIMB
8052]
gi|149903021|gb|ABR33854.1| type II secretion system protein [Clostridium beijerinckii NCIMB
8052]
Length = 371
Score = 36.3 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 8/159 (5%)
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIA 227
++ + + L + GI I +AL VA+ + S + + +
Sbjct: 22 FKKRIKFKHKVNEEQLALISGSLAQIYKDGIRITEALDLVADIL--SSKIYKDSLYGVLE 79
Query: 228 ELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEA 287
+ + F F + +I + + L+ L ++
Sbjct: 80 LIKQGSSLSQGFSEFKDLYP-----EFFIGIISIGENTGKLYEVLKGLSVYYDKSLFIKK 134
Query: 288 EKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
E K A + P + + + + L + ++ + P I +M
Sbjct: 135 EIKNACIYP-MFIFISMILLSIFLVNEVIPNFFEIYKSM 172
>gi|303228391|ref|ZP_07315224.1| type II secretion system F domain protein [Veillonella atypica
ACS-134-V-Col7a]
gi|302516893|gb|EFL58802.1| type II secretion system F domain protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 390
Score = 36.3 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 16/138 (11%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + ++SGIS+ ++L + + G L + + A
Sbjct: 64 LGLLLQSGISLRRSLELL---MDGSKTMLYRSL---YEGIQRGQPLSEALRE-------K 110
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFLP 308
AL++S ++G++L+ + S R + + A S L V M +FFL
Sbjct: 111 GFPPIALALLESGEMSGNVGEALQYIASYYERERKYQQKIVSAISYPLFLLVLMNVFFLV 170
Query: 309 VLILVIIGPAILSIIDTM 326
++ +I P+ + TM
Sbjct: 171 TILFII--PSFTRVFATM 186
>gi|46190542|ref|ZP_00206508.1| COG2064: Flp pilus assembly protein TadC [Bifidobacterium longum
DJO10A]
Length = 58
Score = 36.3 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 272 LRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
L + + + E+ AA L KL +P + FLP +LV + PAI S +
Sbjct: 6 LESAIEQLDRDERAAIERNAAKLSVKLLMPTGLCFLPAFVLVGVIPAIASFM 57
>gi|145221977|ref|YP_001132655.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
gi|145214463|gb|ABP43867.1| type II secretion system protein [Mycobacterium gilvum PYR-GCK]
Length = 261
Score = 36.3 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 19/219 (8%)
Query: 97 NIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156
+LRA R + L +L I L + + L +
Sbjct: 16 PTDARLRAPVLRRTSTPRRRLPGQLPAAIACLTVAAVHTPTTAAALGLLLATLSARRRVT 75
Query: 157 GYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV 216
A DALD+L+ + G A+ + G+
Sbjct: 76 RAHRRRTAE--------------AAALQDALDVLVGELRVGAHPVAAITVAGHEARGR-- 119
Query: 217 PLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD-CVRNATQALIQSDRYGTSIGDSLRVL 275
++E + A + R+ + +G +I +R
Sbjct: 120 -IAESLNAVAARALLGADVPAGLRAEGRRSPSPGHWDRLAVCWQLAQTHGLAIAALMRAA 178
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVI 314
+ ++ G + T +I+ LPVL +++
Sbjct: 179 QRDITERERFRGRVESGMAGARATA-VILAGLPVLGVLL 216
>gi|313497414|gb|ADR58780.1| XcpS [Pseudomonas putida BIRD-1]
Length = 400
Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 7/145 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+RQ + + L +GI + AL + + L ++ L+
Sbjct: 50 RQPRRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLR--QPALHSVLVALRGSLA 107
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ AL+++ + L L + + + +
Sbjct: 108 EGLGLARSLARQG-----APFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKAR 162
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
A + P + + + + + L+ ++
Sbjct: 163 TALIYPAVLMGVSLAVVIGLMTFVV 187
>gi|319956473|ref|YP_004167736.1| type II secretion system f domain protein [Nitratifractor
salsuginis DSM 16511]
gi|319418877|gb|ADV45987.1| Type II secretion system F domain protein [Nitratifractor
salsuginis DSM 16511]
Length = 416
Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 20/160 (12%), Positives = 52/160 (32%), Gaps = 19/160 (11%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ N V + + + V +GI + +AL+ + + E++
Sbjct: 265 PKFYLINRV-----IFLSSMYNYTLVFGELVRAGIPVSEALQTAVNMVNNDY--IREKLE 317
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
A + + AFE N +I++ + L+ +
Sbjct: 318 TVNANIGRGMSLTEAFEQTGL------FENMLLQMIKAGEASGQLDKMLQKVTDYYNMRF 371
Query: 284 LMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
+ ++ + P I+ F +++++ I +
Sbjct: 372 QDIIDNLSSYIEP------IMLFFIAGLVLLMALGIFLPM 405
>gi|325275747|ref|ZP_08141627.1| type II secretion system protein [Pseudomonas sp. TJI-51]
gi|324099124|gb|EGB97090.1| type II secretion system protein [Pseudomonas sp. TJI-51]
Length = 89
Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 37/88 (42%)
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+ ++ + L Q G+ SL L + RL +++ + + K++
Sbjct: 1 DKAAQVLAVEEFTDTCVILRQLLAQGSGAMKSLLALKALLDDRRLTRLQERVSMMSAKMS 60
Query: 300 VPMIIFFLPVLILVIIGPAILSIIDTMK 327
M++F P L++V+ GP ++ +
Sbjct: 61 AVMMVFLFPALLIVLAGPGFSALARALS 88
>gi|312222619|dbj|BAJ33524.1| fatty acid transport protein [Ostrinia scapulalis]
Length = 650
Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 10/108 (9%), Positives = 37/108 (34%)
Query: 123 VPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRA 182
+ + +L + + + ++++ + F ++++ +R +
Sbjct: 1 MLVALAVLVASCAVAWVFQDWQTSLIVLAILVVVYLLVFYWRWLYVAARTARRDFTALFH 60
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+ L L +S +I V ++ L ++ + T ++
Sbjct: 61 YIKILSLSRRLTKSNSAIPDVFHDVVLKHPNKNCFLIDDEVWTFRQVE 108
>gi|307081837|ref|ZP_07491007.1| putative bacterial type II secretion system protein F domain
protein [Mycobacterium tuberculosis SUMu011]
gi|308360501|gb|EFP49352.1| putative bacterial type II secretion system protein F domain
protein [Mycobacterium tuberculosis SUMu011]
Length = 171
Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN---FY 243
LD+L +C+ +G+++ A L+ + L+ + +A+
Sbjct: 26 LDVLAVCLAAGMAVS---TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLP 82
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + +S G ++ D + L + R + A A G + P+
Sbjct: 83 PGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLG 142
Query: 304 IFFLPVLILVIIGPAILSI 322
+ FLP + V I P ++ +
Sbjct: 143 LCFLPAFLCVGIVPLVVGL 161
>gi|330890301|gb|EGH22962.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
mori str. 301020]
Length = 403
Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 42/146 (28%), Gaps = 11/146 (7%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ +D+AL E Q + + + ++ A
Sbjct: 66 LASVTRQLASLLSAGLPLDEALGATVEQAERQH--IIQTLSAIRTDVRSGMRLAEALAA- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + +ALI + + + L + + L + +
Sbjct: 123 ----RPRDFPDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKI----LTAFIYPGV 174
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ +++ ++ + I+
Sbjct: 175 VGLVSIAIVIFLLSYVVPQIVSAFSQ 200
>gi|303230740|ref|ZP_07317487.1| type II secretion system F domain protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302514500|gb|EFL56495.1| type II secretion system F domain protein [Veillonella atypica
ACS-049-V-Sch6]
Length = 390
Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 16/138 (11%)
Query: 190 LLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMD 249
L + ++SGIS+ ++L + + G L + + A
Sbjct: 64 LGLLLQSGISLRRSLELL---MDGSKTMLYRSL---YEGIQRGQPLSEALRE-------K 110
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSET-RSERLMEAEKKAASLGPKLTVPMIIFFLP 308
AL++S ++G++L+ + S R + + A S L V M +FFL
Sbjct: 111 GFPPIALALLESGEMSGNVGEALQYIASYYERERKYQQKIVSAISYPLFLLVLMNVFFLV 170
Query: 309 VLILVIIGPAILSIIDTM 326
++ +I P+ + TM
Sbjct: 171 TILFII--PSFTRVFATM 186
>gi|218778336|ref|YP_002429654.1| pilus assembly protein PilO [Desulfatibacillum alkenivorans AK-01]
gi|218759720|gb|ACL02186.1| Pilus assembly protein PilO [Desulfatibacillum alkenivorans AK-01]
Length = 215
Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 18 ITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDS 77
I V+ F +I A+ L + + + E + S K + ++R +
Sbjct: 27 ILIFVAAFLVIGALFTFLLFK-PYWTQKSELTTKLENKLNEVRVSQAKAAKLPKVREQRK 85
Query: 78 KSLRNFVKKL-NLKAILVDENIVNKLRAAGFRSEYSLNIL 116
K+ K +L +++++ +G + +
Sbjct: 86 KAEERLAKSAESLPKKKEVPELLDRMSLSGKEAGLEWTLF 125
>gi|241664635|ref|YP_002982995.1| general secretion pathway protein F [Ralstonia pickettii 12D]
gi|240866662|gb|ACS64323.1| general secretion pathway protein F [Ralstonia pickettii 12D]
Length = 403
Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ +D+AL +A+ + E + AE+ + VA
Sbjct: 69 VTRQLASLLVAGLPLDEALAALADQAERAY--VGELLAAIRAEVVGGSSLSVALAQHPK- 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +AL+ + + ++G L L S + ++ K A P + V ++ F
Sbjct: 126 ----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAI-VTVVAF 180
Query: 306 FLPVLILVIIGPAILSI 322
+ + +L + P ++S+
Sbjct: 181 AIVIFLLSYVVPQVVSV 197
>gi|239827897|ref|YP_002950521.1| type II secretion system protein [Geobacillus sp. WCH70]
gi|239808190|gb|ACS25255.1| type II secretion system protein [Geobacillus sp. WCH70]
Length = 403
Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 55/164 (33%), Gaps = 8/164 (4%)
Query: 163 APSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEM 222
P ++ + ++ + + L +++G+SI + R +A +S L +
Sbjct: 45 VPQTLLTKEITFGKAVKLQDFVIYLRQFATLIKAGVSIVDSTRILAS--QTESKALKNAL 102
Query: 223 LLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSE 282
+ L A ++++ G ++ ++L L
Sbjct: 103 MEVEESLRAGNPLSAAAAKHPRIFPA-----MFVNMVKAGEAGGNMDETLERLADHFEKI 157
Query: 283 RLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ + +A P + + + + +LV + P +++
Sbjct: 158 HRTKQKIVSALAYPIAVAIIAVAVV-IFLLVTVVPTFVAMFADF 200
>gi|148379869|ref|YP_001254410.1| type II secretion system protein F [Clostridium botulinum A str.
ATCC 3502]
gi|153933284|ref|YP_001384166.1| type II secretion system protein F [Clostridium botulinum A str.
ATCC 19397]
gi|153934559|ref|YP_001387707.1| type II secretion system protein F [Clostridium botulinum A str.
Hall]
gi|148289353|emb|CAL83449.1| general secretion pathway protein [Clostridium botulinum A str.
ATCC 3502]
gi|152929328|gb|ABS34828.1| bacterial type II secretion system protein F [Clostridium botulinum
A str. ATCC 19397]
gi|152930473|gb|ABS35972.1| bacterial type II secretion system protein F [Clostridium botulinum
A str. Hall]
Length = 396
Score = 36.3 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 68/201 (33%), Gaps = 16/201 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQK---RQSSIKRAW 183
++ I +F + + V Y + + ++ Q
Sbjct: 204 LGMITAIKVFNVILGILFISISFVLLGSNFFYKRYKIKYAVDNLKIKTPILGQIYKNIFI 263
Query: 184 PDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFY 243
+ + + + ++SGI I+++L+ + E + E + + + ++
Sbjct: 264 CNFSNSMNLMIKSGIPINKSLKLLEEV--TDNYIFKENIKNLNKNIKDGKSISISLNKCG 321
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
++ + + G + +S + + E+K + KL P I
Sbjct: 322 FSNKI-----LLSMVHIGEESG-RLEESFYSVYKIL----KKDLEEK-LKVSVKLIEPTI 370
Query: 304 IFFLPVLILVIIGPAILSIID 324
I F+ ++I +I + +++
Sbjct: 371 IIFMSLIICIIFIYVFVPMMN 391
>gi|260893568|ref|YP_003239665.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
gi|260865709|gb|ACX52815.1| Type II secretion system F domain protein [Ammonifex degensii KC4]
Length = 409
Score = 36.3 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 8/160 (5%)
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+ R + R +E+G+ + +LR + ++ L + +
Sbjct: 50 HLDLRALLRLKAKSRDMAVLTRQFATLLEAGVPLLTSLRVLER--QTKNRQLKKCLAEVA 107
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLME 286
AE+ + AF + +++ ++ +L L + + +
Sbjct: 108 AEVQKGRSLAEAFGHHREILP-----EIFLSMVAVGETSGTLDKALGRLAAYFERQADLT 162
Query: 287 AEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTM 326
+ K A+ P L + + L+++I+ P I M
Sbjct: 163 DKLKTATSYPLLVAGVALVTAIALLVLIV-PIFADIFRQM 201
>gi|159463540|ref|XP_001690000.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283988|gb|EDP09738.1| predicted protein [Chlamydomonas reinhardtii]
Length = 4666
Score = 36.3 bits (82), Expect = 6.9, Method: Composition-based stats.
Identities = 36/289 (12%), Positives = 74/289 (25%), Gaps = 49/289 (16%)
Query: 26 SLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVK 85
+L+ + L++R+ ++A ++ + A + LR + L +
Sbjct: 760 ALLATSLRALHNRVSLQQRVSALARRCGAALARRAVRGWRQQALAGLRLQSFGRLLH--- 816
Query: 86 KLNLKAILVDENIVNKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYP 145
L A RS L + + + L
Sbjct: 817 ----------AKWRRTLSRAVLRS-----WFLAAHS---------ASLQLHLLEALEAAN 852
Query: 146 FQLRVGAVILIGYVGFCAPSVWISN---LVQKRQSSIKRAWPDALDLLLICVESGISID- 201
A G+ P V ++ ++R + + RAW +G +
Sbjct: 853 LTSTTSAGTGGDVAGYYVPPVRLAKLASRARRRATEVLRAWHSRASYTAGLSRAGARLQR 912
Query: 202 --------QALRRVAEDIGGQSVPLSEEMLLTIAELS-FLPNRQVAFENF---YNRTQMD 249
R + MLL + A+ R +
Sbjct: 913 RCRQLLLGSCFRGWRSSVTAVRARRGTAMLLVRRAVKALGVECLRAWRQATARAVRLRRT 972
Query: 250 CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + + ++ R L + E RL E + +L
Sbjct: 973 LLEVLARRVERTKRV------VLLGWLEEVHETRLRREEVRCVKADARL 1015
>gi|320328776|gb|EFW84775.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330881976|gb|EGH16125.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 403
Score = 36.3 bits (82), Expect = 6.9, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 42/146 (28%), Gaps = 11/146 (7%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ +D+AL E Q + + + ++ A
Sbjct: 66 LASVTRQLASLLSAGLPLDEALGATVEQAERQH--IIQTLGAIRTDVRSGMRLAEALAA- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + +ALI + + + L + + L + +
Sbjct: 123 ----RPRDFPDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKI----LTAFIYPGV 174
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ +++ ++ + I+
Sbjct: 175 VGLVSIAIVIFLLSYVVPQIVSAFSQ 200
>gi|289578260|ref|YP_003476887.1| type II secretion system F domain protein [Thermoanaerobacter
italicus Ab9]
gi|289527973|gb|ADD02325.1| Type II secretion system F domain protein [Thermoanaerobacter
italicus Ab9]
Length = 402
Score = 36.3 bits (82), Expect = 6.9, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 13/137 (9%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +GI + A+ V + +G +SE + ++ +
Sbjct: 271 FTRTLGTLISAGIPLIAAMEVVEKVVGNTI--VSEGLRKAQEDIKKGLPLSEPLKKMG-- 326
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+I S+ L E A S L P+II
Sbjct: 327 ----IFPPMVIQMISVGESSGSLDSILNKAADFYDGEVDT-----AVSQMTTLLEPLIIV 377
Query: 306 FLPVLILVIIGPAILSI 322
L ++ I+ I+ +
Sbjct: 378 MLATVVGFIVVSIIMPL 394
>gi|257868320|ref|ZP_05647973.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257802434|gb|EEV31306.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
Length = 278
Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 15/196 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ L F L+ L VI G+ + + V++R + +
Sbjct: 22 LIFLIGYPAFIIGGLVFLMTYLWWAVVIAAFAGGYLGYRIILPMTVERRYETQSFLARNK 81
Query: 187 LDLLLICVESG--ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA---FEN 241
L+ V ++DQ+L+ V + + G L+ E+ IA L+ + Q +
Sbjct: 82 FLTLMTQVMEDQTRTVDQSLQLVVKRLDG---ELARELTQLIAALNVGSDPQRVSALLKE 138
Query: 242 FYNRTQMD-----CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
R D + L + + D K + G
Sbjct: 139 LGERYSADLFFGQYLDQLETILQEGKENVEVLQDIFTYHNKVLEKMNEFRKIKDSLLSGV 198
Query: 297 KLTVPMIIFFLPVLIL 312
K+ I F L +L++
Sbjct: 199 KIM--TIAFLLLILLM 212
>gi|229591511|ref|YP_002873630.1| putative general secretion pathway protein F [Pseudomonas
fluorescens SBW25]
gi|229363377|emb|CAY50524.1| putative general secretion pathway protein F [Pseudomonas
fluorescens SBW25]
Length = 400
Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 8/145 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G ++++L + + + ++ A E
Sbjct: 64 LVSFTQQLATLLGAGQPLERSLGILLK--QPGQPQTRALIERIREQVKAGQPLSKALEEE 121
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D +++++ G ++ D+LR L +L+ E A + P V
Sbjct: 122 G-----DQFSPLYLSMVRAGEAGGALEDTLRQLSDYLERSQLLRGEVINALIYPAFLVVG 176
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
++ L L+L + P + I +
Sbjct: 177 VLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|148546332|ref|YP_001266434.1| general secretion pathway protein F [Pseudomonas putida F1]
gi|148510390|gb|ABQ77250.1| general secretion pathway protein F [Pseudomonas putida F1]
Length = 400
Score = 36.3 bits (82), Expect = 7.1, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 7/145 (4%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
+RQ + + L +GI + AL + + L ++ L+
Sbjct: 50 RQPRRQRLSRAQLCELTRQLATLTGAGIPLVDALATLERQLR--QPALHSVLVALRGSLA 107
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ AL+++ + L L + + + +
Sbjct: 108 EGLGLARSLARQG-----APFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKAR 162
Query: 291 AASLGPKLTVPMIIFFLPVLILVII 315
A + P + + + + + L+ ++
Sbjct: 163 TALIYPAVLMGVSLAVVIGLMTFVV 187
>gi|309780544|ref|ZP_07675291.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA]
gi|308920699|gb|EFP66349.1| general secretion pathway protein F [Ralstonia sp. 5_7_47FAA]
Length = 403
Score = 36.3 bits (82), Expect = 7.2, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G+ +D+AL +A+ + E + AE+ + VA
Sbjct: 69 VTRQLASLLVAGLPLDEALAALADQAERAY--VGELLAAIRAEVVGGSSLSVALAQHPK- 125
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
+ +AL+ + + ++G L L S + ++ K A P + V ++ F
Sbjct: 126 ----DFPDIYRALVSAGEHSGNLGLVLSRLADYIESRNALTSKIKLAFTYPAI-VTVVAF 180
Query: 306 FLPVLILVIIGPAILSI 322
+ + +L + P ++S+
Sbjct: 181 AIVIFLLSYVVPQVVSV 197
>gi|30983816|gb|AAP41216.1| 5-HT receptor [Haliotis laevigata]
Length = 237
Score = 36.3 bits (82), Expect = 7.2, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + + ++ E+KAA +T I+ +LP I+ ++ P + +
Sbjct: 183 SKMAMSRKEKLELKRERKAARTLAIITGAFIMCWLPFFIVALVNPFLPEV 232
>gi|30983814|gb|AAP41215.1| 5-HT receptor [Haliotis rubra]
Length = 237
Score = 36.3 bits (82), Expect = 7.2, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 273 RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSI 322
+ + + ++ E+KAA +T I+ +LP I+ ++ P + +
Sbjct: 183 SKMAMSRKEKLELKRERKAARTLAIITGAFIMCWLPFFIVALVNPFLPEV 232
>gi|291455824|ref|ZP_06595214.1| hypothetical protein BIFBRE_03019 [Bifidobacterium breve DSM 20213]
gi|291382752|gb|EFE90270.1| hypothetical protein BIFBRE_03019 [Bifidobacterium breve DSM 20213]
Length = 200
Score = 36.3 bits (82), Expect = 7.2, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 34/175 (19%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
L ++ + + G S+ +AL V +GG + + L + A+
Sbjct: 28 AAWAMLVLRMVQVSLRQGASVPRALDVVGRAVGGAYG---QCLSRVGESLLRGVSWSDAW 84
Query: 240 ------------ENFYNRTQMD-------------------CVRNATQALIQSDRYGTSI 268
N R + ++L + G S
Sbjct: 85 CAALAGTDASAGMNHSARLGGAKRRGRSGQHGDTDGGAGDIALGMIRESLEPAWLQGDSP 144
Query: 269 GDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSII 323
G + V + + E+ AA L +L +P + FLP ++V + PAI S +
Sbjct: 145 GVLIDAAVEQLDKDERARIERAAARLSVRLLMPTGLCFLPAFVIVGVLPAIASFL 199
>gi|332023689|gb|EGI63913.1| 5-hydroxytryptamine receptor 1 [Acromyrmex echinatior]
Length = 557
Score = 35.9 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
+F R + +RN Q I+ R G S R R ++E+KA++ +
Sbjct: 296 RHFSER-RESLIRNMLQKSIRILRTGNSRACICNK-----RQLRRRKSERKASTTLGIIV 349
Query: 300 VPMIIFFLPVLILVIIGPAI 319
II +LP +L +I P
Sbjct: 350 GAFIICWLPFFMLALIRPFY 369
>gi|217971718|ref|YP_002356469.1| type II secretion system protein [Shewanella baltica OS223]
gi|217496853|gb|ACK45046.1| type II secretion system protein [Shewanella baltica OS223]
Length = 406
Score = 35.9 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 12/138 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ SGI I +A+ ++E Q + + + +L+ +
Sbjct: 66 LQIFTRQMYSLTRSGIPILRAIAGLSETAHSQR--MKDALNDISEQLTAGRPLSSSMNQ- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + +++ + D+ L E+ K+A + PM
Sbjct: 123 ----HPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSA-----MRYPM 173
Query: 303 IIFFLPVLILVIIGPAIL 320
+ L +VI+ ++
Sbjct: 174 FVLISIALAMVILNIMVI 191
>gi|75074880|sp|Q9TUQ2|CFTR_MACNE RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|5679250|gb|AAD46905.1|AF162400_1 cystic fibrosis transmembrane conductance regulator [Macaca
nemestrina]
Length = 1481
Score = 35.9 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|257485210|ref|ZP_05639251.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331010891|gb|EGH90947.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 403
Score = 35.9 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 42/146 (28%), Gaps = 11/146 (7%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+ +D+AL E Q + + + ++ A
Sbjct: 66 LASVTRQLASLLSAGLPLDEALGATVEQAERQH--IIQTLSAIRTDVRSGMRLAEALAA- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + +ALI + + + L + + L + +
Sbjct: 123 ----RPRDFPDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKI----LTAFIYPGV 174
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ +++ ++ + I+
Sbjct: 175 VGLVSIAIVIFLLSYVVPQIVSAFSQ 200
>gi|118572192|sp|Q2IBA1|CFTR_CERAE RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|86211686|gb|ABC87491.1| cystic fibrosis transmembrane conductance regulator, ATP-binding
cassette (sub-family C, member 7) [Chlorocebus aethiops]
Length = 1481
Score = 35.9 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|238916728|ref|YP_002930245.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
27750]
gi|238872088|gb|ACR71798.1| type IV pilus assembly protein PilC [Eubacterium eligens ATCC
27750]
Length = 425
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 13/146 (8%), Positives = 47/146 (32%), Gaps = 10/146 (6%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ +++G+ + AL A + + + +S +
Sbjct: 289 CASFARTMSTLLQAGMPMIDALEISASTMKNVL--FYDGLEKAKNGVSLGLPLSNQLKAT 346
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
++ ++ + L + E ++ + + + P + V M
Sbjct: 347 GL------FPAMVVHMVGIGEETGNVEEMLTNSAAYYEEEVEVQTQTLTSLMEPIIIVLM 400
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ V++++ I ++ + +T+ +
Sbjct: 401 ALVV--VMLIMAIYQPMIQLYNTLGN 424
>gi|62510444|sp|Q7JII8|CFTR_MACFA RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|75072565|sp|Q7JII7|CFTR_MACFU RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|76803546|sp|Q00553|CFTR_MACMU RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|5679221|gb|AAD46904.1|AF162373_1 cystic fibrosis transmembrane conductance regulator [Macaca fuscata]
gi|8886465|gb|AAF80467.1|AF162177_1 cystic fibrosis transmembrane conductance regulator [Macaca
fascicularis]
gi|3057116|gb|AAC14012.1| cystic fibrosis transmembrane conductance regulator [Macaca mulatta]
Length = 1481
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|148272103|ref|YP_001221664.1| hypothetical protein CMM_0924 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830033|emb|CAN00961.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 341
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 6/127 (4%)
Query: 205 RRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM------DCVRNATQAL 258
RR+ + + L +S + A + D + +
Sbjct: 210 RRLVSRALPREPAPGLVLDLVAMAMSGGASVPRAVAVVRRACERAGLRAGDDLDAVGSVV 269
Query: 259 IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPA 318
+ R G + L R + AE+ AA L +L +P+ + LP + V + P
Sbjct: 270 DAAARTGAPVAVLLGSEAERIRRDAATWAERAAARLAARLMLPLGVCILPAFLAVGVVPM 329
Query: 319 ILSIIDT 325
+L+++ +
Sbjct: 330 LLAVVSS 336
>gi|38322668|gb|AAR16227.1| cystic fibrosis transmembrane conductance regulator, ATP-binding
cassette (sub-family C, member 7) [Papio anubis]
Length = 1481
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|74136425|ref|NP_001028110.1| cystic fibrosis transmembrane conductance regulator [Macaca mulatta]
gi|3047171|gb|AAC14011.1| cystic fibrosis transmembrane conductance regulator [Macaca mulatta]
Length = 1481
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|68270990|gb|AAY89007.1| cystic fibrosis transmembrane conductance regulator, ATP-binding
cassette (sub-family C, member 7) [Macaca mulatta]
Length = 1481
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|162952000|ref|NP_001106085.1| cystic fibrosis transmembrane conductance regulator [Papio anubis]
gi|75074803|sp|Q9TSP5|CFTR_PAPAN RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|5679281|gb|AAD46907.1|AF162427_1 cystic fibrosis transmembrane conductance regulator [Papio anubis]
Length = 1481
Score = 35.9 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|302036148|ref|YP_003796470.1| type IV pilus biogenesis protein PilC [Candidatus Nitrospira
defluvii]
gi|300604212|emb|CBK40544.1| Type IV pilus biogenesis protein PilC [Candidatus Nitrospira
defluvii]
Length = 405
Score = 35.9 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 16/138 (11%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ +G+ + Q L ++ ++ L E + + A +
Sbjct: 65 LVVFTRQFGTMINAGLPLIQCLDILST--QSENKVLRETVGDVKNSVEAGSTFSDALKRH 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +I + G + L L +KA L ++ M
Sbjct: 123 PK-----VFDDLYVNMIHAGEVGGLLDTILTRLAKHI---------EKAMKLKGQIKSAM 168
Query: 303 IIFFLPVLILVIIGPAIL 320
+ V + V+I ++
Sbjct: 169 VYPTAIVGVAVVIISVLM 186
>gi|113475417|ref|YP_721478.1| type II secretion system protein [Trichodesmium erythraeum IMS101]
gi|110166465|gb|ABG51005.1| type II secretion system protein [Trichodesmium erythraeum IMS101]
Length = 377
Score = 35.9 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 8/142 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+G+ + + LR + + + + + E+ A +
Sbjct: 37 LSIFARQFAAMFNAGVPMIRCLRVLKD--QTSNAKIKYALKQISGEVEKGNELSEAMKEH 94
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+++ + G + + L L +E +A PK TV
Sbjct: 95 PAC-----FDELFISMVAAGEVGGVLDEVLDRLAVMLEKNAKTISEINSAMSYPK-TVMF 148
Query: 303 IIFFLPVLILVIIGPAILSIID 324
I + + + P I +
Sbjct: 149 IALAVFFGMTTFLLPTFAGIFE 170
>gi|183221064|ref|YP_001839060.1| general secretion pathway protein F [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911158|ref|YP_001962713.1| type II secretory pathway protein F [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775834|gb|ABZ94135.1| Type II secretory pathway component, protein F [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779486|gb|ABZ97784.1| General secretion pathway protein F [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 408
Score = 35.9 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 26/204 (12%), Positives = 65/204 (31%), Gaps = 24/204 (11%)
Query: 116 LLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKR 175
++ I+ I G F K E ++ ++ + +G + +SN +
Sbjct: 220 YVLTNYWYFILAFIAGSFLSFLKWKSSEDGKKVWDTFLLRLPVIGTLLRKILVSNFARN- 278
Query: 176 QSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNR 235
L I + + + + +L V++ +G EE+ I ++
Sbjct: 279 --------------LSILLLNRVPLIVSLNIVSDVVG--HTVFKEEIDAAIIKIKEGGKL 322
Query: 236 QVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLG 295
+ + + ++ + + + + L SE + SL
Sbjct: 323 SDSLQ------GSQVLPQMVLGMLSAGEASDKVPEMMNKLSEIYESEVDTAIKSLTQSLE 376
Query: 296 PKLTVPMIIFFLPVLILVIIGPAI 319
P + + M + ++ I+ P
Sbjct: 377 PMMIIVMG-GIIFTIMAAIMTPMY 399
>gi|158334812|ref|YP_001515984.1| transglutaminase-like protein [Acaryochloris marina MBIC11017]
gi|158305053|gb|ABW26670.1| transglutaminase-like protein, putative [Acaryochloris marina
MBIC11017]
Length = 739
Score = 35.9 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 6/123 (4%)
Query: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIK 180
L + G+ G+ + + + I +G+ AP W ++R +++
Sbjct: 599 LTAIFAMIGAGLAQALGFFTGGWQGWMAGLLVLSGIAVLGWLAPQGWQWWRYRRRLATLP 658
Query: 181 RAWPDALDLLLICVESGIS------IDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
+L + G+ + R+ + G L E+ +
Sbjct: 659 PMEKLYQRMLHVLANRGVPKRPHETPFEYTHRLHQKGEGAIADLVTEISQIYVSWRYGHQ 718
Query: 235 RQV 237
Sbjct: 719 PYD 721
>gi|227891631|ref|ZP_04009436.1| type II secretory pathway/competence component protein
[Lactobacillus salivarius ATCC 11741]
gi|227866547|gb|EEJ73968.1| type II secretory pathway/competence component protein
[Lactobacillus salivarius ATCC 11741]
Length = 357
Score = 35.9 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 17/130 (13%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
+L + +G S+ Q+L + + L A + +
Sbjct: 34 FFSILSDLLSAGFSLRQSLISIQNIM----PEFYSVSHKVKKNLLMGTKISDALKENIS- 88
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
++ L+ ++++G + S++ L S + + K+ + PMI+F
Sbjct: 89 ------KSTYYQLLIAEQHG-EMEKSIKQLGSLLERRVEQQNKLKSL-----MVYPMILF 136
Query: 306 FLPVLILVII 315
F+ ++I++ I
Sbjct: 137 FMLIIIMLGI 146
>gi|296120429|ref|YP_003628207.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
gi|296012769|gb|ADG66008.1| type II secretion system protein [Planctomyces limnophilus DSM
3776]
Length = 402
Score = 35.9 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 57/152 (37%), Gaps = 16/152 (10%)
Query: 181 RAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE 240
R + + +G+ + +++ + ++ L + + ++ + +
Sbjct: 62 RMLATLFSQMSDLLRAGVPLLRSIELLER--QTKNQALKRVLEDVRSRVADGGRLADSMK 119
Query: 241 NFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
N T +++ + G + DSL + T + ++++ AA ++
Sbjct: 120 EHPN-----AFNKLTVSIVHAGEEGGFLEDSLSRVAVFTEHQEELKSKVVAA-----MSY 169
Query: 301 PMIIFFLP----VLILVIIGPAILSIIDTMKD 328
P+++ L V ++V P + D+MK
Sbjct: 170 PLVLMVLGTIVVVGMIVFFVPGFEPMFDSMKQ 201
>gi|111225902|ref|YP_716696.1| hypothetical protein FRAAL6567 [Frankia alni ACN14a]
gi|111153434|emb|CAJ65190.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a]
Length = 432
Score = 35.9 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 22/60 (36%)
Query: 251 VRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
+R A A ++ G +L L R E E+ A G P+ + FLP
Sbjct: 354 MRAAVAAFDRAQTSGAKPAAALVRLAQRARDEAHAESIAAARRAGVLAVAPLGLCFLPAF 413
>gi|326392591|ref|ZP_08213935.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
gi|325991368|gb|EGD50016.1| Type II secretion system F domain [Thermoanaerobacter ethanolicus
JW 200]
Length = 144
Score = 35.9 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
P+ +DL + + + ++ A+ Q+ + + AE ++VA + F
Sbjct: 1 MPEIVDLFELGAAADVPLEDIFLITAQS--AQAKEVRNALTKLAAEYIMTKEKEVALKRF 58
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
N + AL+Q +R G ++ + L L + + + ++ S+ K+
Sbjct: 59 INEVNLPEANVLAMALLQGERTGRTL-EILSTLSTSLFNTAASKIARQDKSMEYKVLAA- 116
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
+ F + ++ + I +I ++
Sbjct: 117 VFFLMASIVTLYIYSYFTNIQGGLR 141
>gi|318080258|ref|ZP_07987590.1| hypothetical protein SSA3_27100 [Streptomyces sp. SA3_actF]
Length = 966
Score = 35.9 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 27/243 (11%), Positives = 68/243 (27%), Gaps = 30/243 (12%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R++ V + +R+ + ++ R + R ++ +A ++ +L
Sbjct: 111 RLRLVHAIADAVREVDQQGEARVDPAAERRALVEQLAR---QRWRPRAAHRRNSLGERLS 167
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AG + + + +++ V +
Sbjct: 168 EAG----------------TAGLLAAVLAVLTALLPLFEAPIAFSVACGFLMLLAVLYFV 211
Query: 164 PS----VWISNLVQKRQSSIKRAWPDALDLLLICVESGISID-QALRRVAEDIGGQSVPL 218
P + + + R E+G+ ++ R V E + L
Sbjct: 212 PVGRAPLLLWMRRESRWFLTTTFLLPVQG--RQSYEAGLLHPFRSWRSVTERAADVAGSL 269
Query: 219 SE--EMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ L + L+ L + + A + +R L ++D I L+ +
Sbjct: 270 RDGGNAQLQLHVLALLEDLRDAHRRWSWDLRGFKRLRPPVLFLRRADASDGGIA-LLQAI 328
Query: 276 VSE 278
Sbjct: 329 SDV 331
>gi|302518513|ref|ZP_07270855.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302427408|gb|EFK99223.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 958
Score = 35.9 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 27/243 (11%), Positives = 68/243 (27%), Gaps = 30/243 (12%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R++ V + +R+ + ++ R + R ++ +A ++ +L
Sbjct: 111 RLRLVHAIADAVREVDQQGEARVDPAAERRALVEQLAR---QRWRPRAAHRRNSLGERLS 167
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AG + + + +++ V +
Sbjct: 168 EAG----------------TAGLLAAVLAVLTALLPLFEAPIAFSVACGFLMLLAVLYFV 211
Query: 164 PS----VWISNLVQKRQSSIKRAWPDALDLLLICVESGISID-QALRRVAEDIGGQSVPL 218
P + + + R E+G+ ++ R V E + L
Sbjct: 212 PVGRAPLLLWMRRESRWFLTTTFLLPVQG--RQSYEAGLLHPFRSWRSVTERAADVAGSL 269
Query: 219 SE--EMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ L + L+ L + + A + +R L ++D I L+ +
Sbjct: 270 RDGGNAQLQLHVLALLEDLRDAHRRWSWDLRGFKRLRPPVLFLRRADASDGGIA-LLQAI 328
Query: 276 VSE 278
Sbjct: 329 SDV 331
>gi|332224265|ref|XP_003261288.1| PREDICTED: cystic fibrosis transmembrane conductance regulator-like
[Nomascus leucogenys]
Length = 1480
Score = 35.9 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVMFFIAVTFISILTTGEGEGRIGIILTLAM 1137
>gi|88856422|ref|ZP_01131080.1| putative integral membrane protein [marine actinobacterium
PHSC20C1]
gi|88814289|gb|EAR24153.1| putative integral membrane protein [marine actinobacterium
PHSC20C1]
Length = 305
Score = 35.9 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 69/225 (30%), Gaps = 8/225 (3%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVW 167
+ + + ++ P+ + ++ + A + + P++
Sbjct: 77 WNSLAAAWFVAGQVGAPLAAALRTHARALRMLVHVQREVATALAAPVATARMVLALPAIG 136
Query: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSV---PLSEEMLL 224
+ +I V G I A+R + + E L
Sbjct: 137 LVFGALLGFDTI-GVLVSTPIGWGCLVVGGALIAAAVRWNRRLVRSATPTQAAPGLECEL 195
Query: 225 TIAELSFLPNRQVA----FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETR 280
+S + A M + L S G + LR E R
Sbjct: 196 MAIAVSGGGSLVNARVVVAGALERFGLMGDGDHLEGVLRLSHEAGVPAAELLRAEADELR 255
Query: 281 SERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+A AA+L +L +P+ + LP +++ + P ++++I +
Sbjct: 256 LAADADARAGAAALSVRLMLPLGLCVLPAFMVLGVLPLMVAVISS 300
>gi|145632541|ref|ZP_01788275.1| putative type IV pilin secretion protein [Haemophilus influenzae
3655]
gi|229844999|ref|ZP_04465136.1| putative type IV pilin secretion protein [Haemophilus influenzae
6P18H1]
gi|144986736|gb|EDJ93288.1| putative type IV pilin secretion protein [Haemophilus influenzae
3655]
gi|229812133|gb|EEP47825.1| putative type IV pilin secretion protein [Haemophilus influenzae
6P18H1]
Length = 406
Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 20/151 (13%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQ--------SVPLSEEMLLTIAELSFLPN 234
+ L I +++G+ ++QAL + L +E+ + +S
Sbjct: 263 LVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQG-- 320
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
F N D Q ++Q + L + + + + +
Sbjct: 321 -----YAFSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIAENYQEKLNHQINLLSQ-- 373
Query: 295 GPKLTVPMIIFFLPVLILVIIGPAILSIIDT 325
+ P+I+ + LI +I+ L I +
Sbjct: 374 ---MLEPLIMVIIGSLIGIIMMGMYLPIFNM 401
>gi|54022325|ref|YP_116567.1| hypothetical protein nfa3610 [Nocardia farcinica IFM 10152]
gi|54013833|dbj|BAD55203.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 202
Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 1/138 (0%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYN- 244
DLL C+ +G+ + A R A G+ +A + +
Sbjct: 55 VFDLLAACLRAGLPMASAARAAAPGSPGELGAALLRAADLLALGADATDAWERAAREAAG 114
Query: 245 RTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMII 304
R + + + +S R G+S+ ++ L + R+ A +A G ++ P+ +
Sbjct: 115 RPGGAEIESLARMARRSARSGSSLAAAVAELAEQHRATVEDAAAARAERAGVLISGPLGL 174
Query: 305 FFLPVLILVIIGPAILSI 322
FLP + + I P ++ +
Sbjct: 175 CFLPAFLCLGIVPVVVGL 192
>gi|318057569|ref|ZP_07976292.1| hypothetical protein SSA3_06509 [Streptomyces sp. SA3_actG]
Length = 958
Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 27/243 (11%), Positives = 68/243 (27%), Gaps = 30/243 (12%)
Query: 44 RMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLR 103
R++ V + +R+ + ++ R + R ++ +A ++ +L
Sbjct: 111 RLRLVHAIADAVREVDQQGEARVDPAAERRALVEQLAR---QRWRPRAAHRRNSLGERLS 167
Query: 104 AAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCA 163
AG + + + +++ V +
Sbjct: 168 EAG----------------TAGLLAAVLAVLTALLPLFEAPIAFSVACGFLMLLAVLYFV 211
Query: 164 PS----VWISNLVQKRQSSIKRAWPDALDLLLICVESGISID-QALRRVAEDIGGQSVPL 218
P + + + R E+G+ ++ R V E + L
Sbjct: 212 PVGRAPLLLWMRRESRWFLTTTFLLPVQG--RQSYEAGLLHPFRSWRSVTERAADVAGSL 269
Query: 219 SE--EMLLTIAELSFLPNRQVAFENFYNRT-QMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ L + L+ L + + A + +R L ++D I L+ +
Sbjct: 270 RDGGNAQLQLHVLALLEDLRDAHRRWSWDLRGFKRLRPPVLFLRRADASDGGIA-LLQAI 328
Query: 276 VSE 278
Sbjct: 329 SDV 331
>gi|254366205|ref|ZP_04982249.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|134151717|gb|EBA43762.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
str. Haarlem]
Length = 199
Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 6/139 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN---FY 243
LD+L +C+ +G+++ A L+ + T L+ + +A+
Sbjct: 54 LDVLAVCLAAGMAVS---TAAAATAAVAPPRLARVLRRTADLLALRADPNIAWSRPPDLP 110
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + +S G ++ D + L + R + A A G + P+
Sbjct: 111 PGTHDAQTDAVLRLARRSAASGAALADRIVELAVQVRHDAAQAAAAAAERAGVLIAGPLG 170
Query: 304 IFFLPVLILVIIGPAILSI 322
+ FLP + V I P ++ +
Sbjct: 171 LCFLPAFLCVGIVPLVVGL 189
>gi|118572196|sp|Q07DX5|CFTR_HYLLE RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|115520990|gb|ABJ08867.1| cystic fibrosis transmembrane conductance regulator, ATP-binding
cassette (sub-family C, member 7) [Nomascus leucogenys]
Length = 1480
Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVMFFIAVTFISILTTGEGEGRIGIILTLAM 1137
>gi|309803910|ref|ZP_07697994.1| type II secretion system F domain protein [Lactobacillus iners
LactinV 11V1-d]
gi|309809545|ref|ZP_07703403.1| type II secretion system F domain protein [Lactobacillus iners SPIN
2503V10-D]
gi|308164005|gb|EFO66268.1| type II secretion system F domain protein [Lactobacillus iners
LactinV 11V1-d]
gi|308170217|gb|EFO72252.1| type II secretion system F domain protein [Lactobacillus iners SPIN
2503V10-D]
Length = 331
Score = 35.9 bits (81), Expect = 8.8, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
LD L + +G S +Q+L + + + + ++ + +
Sbjct: 19 FLDYLQQSLNNGFSFNQSL----KILPHVWNEKVNIIQKLSSNIAQGNDIGQSLVAIGFS 74
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
R Q + + ++G ++ +SL L R + + K+ P + + M++
Sbjct: 75 ------RTIAQQISFAIKHG-NLIESLSQLTKIMRLKNEQIKKIKSEMAYPAVLIVMMVS 127
Query: 306 FLPVL 310
L +
Sbjct: 128 LLIAM 132
>gi|150399724|ref|YP_001323491.1| flagellar assembly protein J [Methanococcus vannielii SB]
gi|150012427|gb|ABR54879.1| type II secretion system protein [Methanococcus vannielii SB]
Length = 558
Score = 35.9 bits (81), Expect = 8.8, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 74/183 (40%), Gaps = 11/183 (6%)
Query: 108 RSEYSLNILLVVRLVVPII--FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
R + L L + ++ +I ++ +I G +++ P+Q+ + +
Sbjct: 260 RIDLKLKKWLTISVLGTVILTGFLIWGKFIGGIPQIMSLPYQVLFALGVTPLAISGYIAQ 319
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRRVAEDIGGQSVPLSEEMLL 224
V + +++K + +PD L L V + G + ++L+ ++ + PL++++
Sbjct: 320 VEENIVIRK-----ELNFPDFLRSLGDSVCAKGGGMTESLQYLSSN---DFGPLTKDLEG 371
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+S + Q A+ F T ++ ++ + G + G++ ++ R
Sbjct: 372 LYKRVSIRIDSQKAWRYFGYDTCSYLIQLFSEMFERCTYLGGNAGEASNIIGKNFRKIIN 431
Query: 285 MEA 287
+
Sbjct: 432 LRR 434
>gi|118572193|sp|Q07DY5|CFTR_COLGU RecName: Full=Cystic fibrosis transmembrane conductance regulator;
Short=CFTR; AltName: Full=ATP-binding cassette sub-family
C member 7; AltName: Full=Channel conductance-controlling
ATPase; AltName: Full=cAMP-dependent chloride channel
gi|115520979|gb|ABJ08857.1| cystic fibrosis transmembrane conductance regulator, ATP-binding
cassette (sub-family C, member 7) [Colobus guereza]
Length = 1481
Score = 35.9 bits (81), Expect = 8.8, Method: Composition-based stats.
Identities = 17/152 (11%), Positives = 49/152 (32%), Gaps = 7/152 (4%)
Query: 7 DLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKD 66
+FD +L + + A+++ +++ + + + + + L+ Q +
Sbjct: 990 TIFDFIQLLLIVIGAIAVVAVLQPYIFVATVPVIVAF----IMLRAYFLQTSQQLKQLES 1045
Query: 67 SASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK---LRAAGFRSEYSLNILLVVRLVV 123
S + T SL+ E + +K L A + S +R+ +
Sbjct: 1046 EGRSPIFTHLVTSLKGLWTLRAFGRQPYFETLFHKALNLHTANWFLYLSTLRWFQMRIEM 1105
Query: 124 PIIFLILGIIWIFGYDKLLEYPFQLRVGAVIL 155
+ + + +I + + +
Sbjct: 1106 IFVIFFIAVTFISILTTGEGEGTVGIILTLAM 1137
>gi|148656329|ref|YP_001276534.1| hypothetical protein RoseRS_2204 [Roseiflexus sp. RS-1]
gi|148568439|gb|ABQ90584.1| hypothetical protein RoseRS_2204 [Roseiflexus sp. RS-1]
Length = 263
Score = 35.9 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 75/219 (34%), Gaps = 6/219 (2%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
S + + V+ + + + ++ I L A+ + YVG P
Sbjct: 43 LPSRWGMTGRFVLGHLAALPLAAVPVLLIASAGVDGMPRLLLATTALGIYLYVGIVIPRK 102
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
++N Q+ Q +++ P + + + + + L R + P+ + +
Sbjct: 103 PVTNR-QREQKRLRQLTPSFVAYVRVALAGYDAPPVLLERYLMRPDDRYAPMQRVVADAL 161
Query: 227 AEL-SFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSL----RVLVSETRS 281
+ A + + T+AL Q++ G+ +L L
Sbjct: 162 HLVHDRGILPFDALRRIARDRGCQELIDVTEALAQAEAEGSDPQAALLAQETTLNQVLHD 221
Query: 282 ERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAIL 320
E E++ L + ++ + ++ ++++G ++
Sbjct: 222 EFRRMIERRKLYLLALAALAVVSVLVQIIFVIVMGSGVM 260
>gi|88859015|ref|ZP_01133656.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata
D2]
gi|88819241|gb|EAR29055.1| type IV pilus biogenesis protein PilC [Pseudoalteromonas tunicata
D2]
Length = 412
Score = 35.9 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 10/149 (6%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAF 239
+ + + +G+ + QA+ + G + L + E+ A
Sbjct: 70 AKDICVLTRQIATMLMAGVPLIQAIDMIGS--GSEKKSLQRLITKIADEVKAGNPFSDAL 127
Query: 240 ENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLT 299
R + L+ S ++ + + + E+ + K
Sbjct: 128 -----RKHPILFDDLYCDLVASGEQSGALDNIFDRVATY--KEKSEALKSKIKKAMIYPI 180
Query: 300 VPM-IIFFLPVLILVIIGPAILSIIDTMK 327
+ I F + ++L+ + P S+
Sbjct: 181 AVLSIAFVVTTILLIFVVPQFQSVFAGFG 209
>gi|330989444|gb|EGH87547.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 403
Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats.
Identities = 15/146 (10%), Positives = 43/146 (29%), Gaps = 11/146 (7%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G+S+D+AL E Q + + + ++ A
Sbjct: 66 LASVTRQLASLLSAGLSLDEALGATVEQAERQH--IIQTLSAIRTDVRSGMRLAEALAA- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ + +ALI + + + L + + L + +
Sbjct: 123 ----RPRDFPDIYRALIGAGEESGDLARVMERLADYIEERNGLRGKI----LTAFIYPGV 174
Query: 303 IIFFLPVLILVIIGPAILSIIDTMKD 328
+ +++ ++ + I+
Sbjct: 175 VGLVSIAIVIFLLSYVVPQIVSAFSQ 200
>gi|257874735|ref|ZP_05654388.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257808899|gb|EEV37721.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 285
Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats.
Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 15/196 (7%)
Query: 127 FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDA 186
+ L F L+ L VI G+ + + V++R + +
Sbjct: 35 LIFLIGYPAFIIGGLVFLMTYLWWAVVIAAFAGGYLGYRIILPMTVERRYETQSFLARNK 94
Query: 187 LDLLLICVESG--ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA---FEN 241
L+ V ++DQ+L+ V + + G L+ E+ IA L+ + Q +
Sbjct: 95 FLTLMTQVMEDQTRTVDQSLQLVVKRLDG---ELARELTQLIAALNVGSDPQRVSALLKE 151
Query: 242 FYNRTQMD-----CVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGP 296
R D + L + + D K + G
Sbjct: 152 LGERYSADLFFGQYLDQLETILQEGKENVEVLQDIFTYHNKVLEKMNEFRKIKDSLLSGV 211
Query: 297 KLTVPMIIFFLPVLIL 312
K+ I F L +L++
Sbjct: 212 KIM--TIAFLLLILLM 225
>gi|269129022|ref|YP_003302392.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
gi|268313980|gb|ACZ00355.1| type II secretion system protein [Thermomonospora curvata DSM
43183]
Length = 247
Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 2/123 (1%)
Query: 180 KRAWPDALDLLLICVESGISIDQALRRVAEDIGG--QSVPLSEEMLLTIAELSFLPNRQV 237
+ A + D + + +G + + A A + L+E A +
Sbjct: 65 RGAIIELCDGVAAELHAGRTPEAAFTAAAAVLPAEVSVPLLAERRRGGPAGPPDPGDIPA 124
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPK 297
A E R + +R G + + L + R E E A GP+
Sbjct: 125 ALERLSARPGAEGLRLLGACWRIGADSGATFATVIADLAAALRDEEAQRREVAAQLAGPR 184
Query: 298 LTV 300
T
Sbjct: 185 ATA 187
>gi|86740440|ref|YP_480840.1| putative integral membrane protein [Frankia sp. CcI3]
gi|86567302|gb|ABD11111.1| putative integral membrane protein [Frankia sp. CcI3]
Length = 302
Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 57/186 (30%), Gaps = 4/186 (2%)
Query: 132 IIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLL 191
++ V +LI + P + + Q RQ + + + L
Sbjct: 53 WAAASVAAGIVAGAVTGWVVGGLLIALAVYGLPRMLGPDRDQARQVARTQGIAVWAEQLR 112
Query: 192 ICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCV 251
+ + ++QA+ A+ + E+ L A + A +
Sbjct: 113 DTLAAAAGLEQAILATAQ---TAPAAIRSEIALLAARIERRERLGPALRGLADDLDDPLA 169
Query: 252 RNATQALIQSDRYGT-SIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVL 310
ALI + + + L L + R++ M + + T+ +++ V
Sbjct: 170 DLVIGALILASEHQARQLSGLLGQLAATARAQVDMLGRIEVGRARMRTTMRVVVVTSIVF 229
Query: 311 ILVIIG 316
++
Sbjct: 230 AGGLVV 235
>gi|115449871|ref|XP_001218718.1| predicted protein [Aspergillus terreus NIH2624]
gi|114187667|gb|EAU29367.1| predicted protein [Aspergillus terreus NIH2624]
Length = 412
Score = 35.9 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 1/163 (0%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
++ A +F ++A+++P + K + V + + K + L +
Sbjct: 221 FLMSFAFVVFFPLFALLVPLPIRVSVAKVHAPLQVFTLAMAVAGMGLGIKLAVDGSLMKK 280
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNK-LRAAGFRSEYSLNILLVVRLVVPIIFLILGIIW 134
+ V L + + + R G + + + R ++ + + G+ +
Sbjct: 281 AHPIIGIVVVSLLILMQPAMGLLQHMHFRRTGGKHVAAYVHRWMGRGLLTLGIINGGLGF 340
Query: 135 IFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
P + ++ G +G V ++ V+ R+
Sbjct: 341 ALAGVGSPGAPRGAMIAYAVIAGVMGVVYVIVSLAVAVRGRKK 383
>gi|78049144|ref|YP_365319.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78037574|emb|CAJ25319.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 1000
Score = 35.9 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 16 VAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTR 75
V + + S+IY + + S L +R + + ++ +S+ R
Sbjct: 774 VIGLGILGLASVIYGLYLWRTASYRLRQR--QLNTVIDRRTRELSDKNLALQQASQEREA 831
Query: 76 DSKSLRNFVKKLNLKAILVDENIVNKLRA 104
+ L + L A+ L+
Sbjct: 832 LMRQLEHRASHDVLTALPNRREAERVLQQ 860
>gi|15610793|ref|NP_218174.1| hypothetical protein Rv3657c [Mycobacterium tuberculosis H37Rv]
gi|31794827|ref|NP_857320.1| hypothetical protein Mb3681c [Mycobacterium bovis AF2122/97]
gi|121639570|ref|YP_979794.1| putative alanine rich membrane protein [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148824860|ref|YP_001289614.1| alanine rich membrane protein [Mycobacterium tuberculosis F11]
gi|224992067|ref|YP_002646756.1| putative alanine rich membrane protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253800698|ref|YP_003033699.1| hypothetical protein TBMG_03697 [Mycobacterium tuberculosis KZN
1435]
gi|289441087|ref|ZP_06430831.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T46]
gi|289445251|ref|ZP_06434995.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
CPHL_A]
gi|289571894|ref|ZP_06452121.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T17]
gi|289572303|ref|ZP_06452530.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289748169|ref|ZP_06507547.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T92]
gi|298527130|ref|ZP_07014539.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
94_M4241A]
gi|2960081|emb|CAA17979.1| POSSIBLE CONSERVED ALANINE RICH MEMBRANE PROTEIN [Mycobacterium
tuberculosis H37Rv]
gi|31620424|emb|CAD95867.1| POSSIBLE CONSERVED ALANINE RICH MEMBRANE PROTEIN [Mycobacterium
bovis AF2122/97]
gi|121495218|emb|CAL73704.1| Possible conserved alanine rich membrane protein [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148723387|gb|ABR08012.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
F11]
gi|224775182|dbj|BAH27988.1| putative alanine rich membrane protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253322201|gb|ACT26804.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
KZN 1435]
gi|289414006|gb|EFD11246.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T46]
gi|289418209|gb|EFD15410.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
CPHL_A]
gi|289536734|gb|EFD41312.1| predicted protein [Mycobacterium tuberculosis K85]
gi|289545648|gb|EFD49296.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T17]
gi|289688756|gb|EFD56185.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
T92]
gi|298496924|gb|EFI32218.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
94_M4241A]
gi|326905492|gb|EGE52425.1| conserved alanine rich membrane protein [Mycobacterium tuberculosis
W-148]
Length = 191
Score = 35.9 bits (81), Expect = 9.1, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 187 LDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFEN---FY 243
LD+L +C+ +G+++ A L+ + L+ + +A+
Sbjct: 46 LDVLAVCLAAGMAVS---TAAAATAAVAPPRLARVLRRAADLLALGADPNIAWSRPPDLP 102
Query: 244 NRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMI 303
T + +S G ++ D + L + R + A A G + P+
Sbjct: 103 PGTHDAQTDAVLRLARRSAASGAALADGIVELAVQVRHDAAQAAAAAAERAGVLIAGPLG 162
Query: 304 IFFLPVLILVIIGPAILSI 322
+ FLP + V I P ++ +
Sbjct: 163 LCFLPAFLCVGIVPLVVGL 181
>gi|288817624|ref|YP_003431971.1| fimbrial assembly protein [Hydrogenobacter thermophilus TK-6]
gi|288787023|dbj|BAI68770.1| fimbrial assembly protein [Hydrogenobacter thermophilus TK-6]
gi|308751222|gb|ADO44705.1| Type II secretion system F domain protein [Hydrogenobacter
thermophilus TK-6]
Length = 407
Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 19/141 (13%)
Query: 186 ALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
L + +G++I A+ +AE + + LS+ +S N A F
Sbjct: 71 FCRQLGTMINAGVNIIDAINILAEQLP--NKMLSDASKQVAKMVSEGMNLSAAMNRFPKV 128
Query: 246 TQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIF 305
L + ++ +L +++++ K+AS
Sbjct: 129 FP-----ELVVNLAKVGEETGNLDVALIRAAEYYEKMAMIKSKIKSAS------------ 171
Query: 306 FLPVLILVIIGPAILSIIDTM 326
F P+ ++VI + I+ +
Sbjct: 172 FYPIFVVVIATIIVTGILYYL 192
>gi|240102078|ref|YP_002958386.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
gi|239909631|gb|ACS32522.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
Length = 325
Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 1/148 (0%)
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQS 177
R+ V + ++ + KL E V I G G+ P R+
Sbjct: 49 GERIAVGVSGGKDSVVLMHLLAKLREKFPFELVAITIDEGIAGYR-PKSVEIAKRNARKL 107
Query: 178 SIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQV 237
I+ + + ++ + I + R + LL A ++
Sbjct: 108 GIEHRIYSFKEYIGFTLDETVGIMGSFERGERVGACSYCGVWRRWLLNYAAKDVGADKLA 167
Query: 238 AFENFYNRTQMDCVRNATQALIQSDRYG 265
N + QM + + + R G
Sbjct: 168 VGHNLDDEVQMFIMNILRGDIARLGRTG 195
>gi|84386331|ref|ZP_00989359.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01]
gi|84378755|gb|EAP95610.1| Type II secretory pathway, component EpsF [Vibrio splendidus 12B01]
Length = 406
Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ V+SG+ +++ L+ VAE + + +L ++++ + + ++
Sbjct: 68 LALITRQISTLVQSGMPLEECLKAVAE--QSEKPRIRTMLLAVRSKVTEGYSLADSLSDY 125
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+ +A++ + + L L + + M KL M
Sbjct: 126 PH-----IFDELFRAMVAAGEKSGHLDAVLERLADYAENRQKMR---------SKLLQAM 171
Query: 303 IIFFLPVLILVIIG 316
I + V+ V I
Sbjct: 172 IYPIVLVVFAVTIV 185
>gi|330883209|gb|EGH17358.1| general secretion pathway protein GspF [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 229
Score = 35.9 bits (81), Expect = 9.4, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 8/145 (5%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
L + +G ++++L + + + ++ VA E
Sbjct: 64 LVSFTQQLATLLGAGQPLERSLGILLK--QPGQPQTKALIERIREQVKAGKPLSVALEEE 121
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
+++++ G ++ +LR L +L+ E A + P V
Sbjct: 122 GT-----QFSPLYISMVRAGEAGGALESTLRQLSDYLERSQLLRGEVINALIYPAFLVVG 176
Query: 303 IIFFLPVLILVIIGPAILSIIDTMK 327
++ L L+L + P + I +
Sbjct: 177 VLGSL-ALLLAYVVPQFVPIFKDLG 200
>gi|262374059|ref|ZP_06067336.1| general secretion pathway protein F [Acinetobacter junii SH205]
gi|262311070|gb|EEY92157.1| general secretion pathway protein F [Acinetobacter junii SH205]
Length = 401
Score = 35.9 bits (81), Expect = 9.4, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 50/141 (35%), Gaps = 13/141 (9%)
Query: 175 RQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPN 234
R+S L + V +GI +++ALR V++ + ++ +++ +
Sbjct: 58 RKSFSAYDLALMTRQLSVLVAAGIPLEEALRAVSKQSEKSH--VQNLLISVRSKVLEGHS 115
Query: 235 RQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
A + A + + + L L T + M+ + + A
Sbjct: 116 LAQAMQQSGR------FPELYIATVAAGERSGHLDLILDQLSDYTENRFAMQKKIQGA-- 167
Query: 295 GPKLTVPMIIFFLPVLILVII 315
+ P+I+ + I++ +
Sbjct: 168 ---MIYPIILMLMSFGIVMGL 185
>gi|152999038|ref|YP_001364719.1| type II secretion system protein [Shewanella baltica OS185]
gi|160873631|ref|YP_001552947.1| type II secretion system protein [Shewanella baltica OS195]
gi|304411543|ref|ZP_07393156.1| Type II secretion system F domain protein [Shewanella baltica
OS183]
gi|307306681|ref|ZP_07586423.1| Type II secretion system F domain protein [Shewanella baltica
BA175]
gi|151363656|gb|ABS06656.1| type II secretion system protein [Shewanella baltica OS185]
gi|160859153|gb|ABX47687.1| type II secretion system protein [Shewanella baltica OS195]
gi|304350070|gb|EFM14475.1| Type II secretion system F domain protein [Shewanella baltica
OS183]
gi|306910649|gb|EFN41078.1| Type II secretion system F domain protein [Shewanella baltica
BA175]
gi|315265860|gb|ADT92713.1| Type II secretion system F domain [Shewanella baltica OS678]
Length = 406
Score = 35.9 bits (81), Expect = 9.4, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 12/138 (8%)
Query: 183 WPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENF 242
+ SGI I +A+ ++E Q + + + +L+ +
Sbjct: 66 LQIFTRQMYSLTRSGIPILRAIAGLSETAHSQR--MKDALNDISEQLTAGRPLSSSMNQ- 122
Query: 243 YNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPM 302
D + +++ + D+ L E+ K+A + PM
Sbjct: 123 ----HPDVFDSLFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKSA-----MRYPM 173
Query: 303 IIFFLPVLILVIIGPAIL 320
+ L +VI+ ++
Sbjct: 174 FVLISIALAMVILNIMVI 191
>gi|118580834|ref|YP_902084.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
gi|118503544|gb|ABL00027.1| type II secretion system protein [Pelobacter propionicus DSM 2379]
Length = 402
Score = 35.9 bits (81), Expect = 9.5, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 7/126 (5%)
Query: 164 PSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEML 223
P ++ + R+ R+ +L+ V++G+ I QAL + + G L+E +
Sbjct: 46 PFQFLFDKRIGRRQLDTRSLLTFNQEMLVLVKAGMPIMQALNTILQRQDGSR--LTEVLR 103
Query: 224 LTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSER 283
++ + A E A +++ + ++ R + +
Sbjct: 104 QVRDDVKGGASLSTALERHGRLFPH-----LYIASVRAGERTGDLINTTRRYIQYLKRVE 158
Query: 284 LMEAEK 289
+ +
Sbjct: 159 AIRKKV 164
>gi|226335535|emb|CAX65666.1| serotonin 5-HT1 receptor [Periplaneta americana]
Length = 683
Score = 35.6 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 265 GTSIGDSL--RVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGP 317
G ++ + L + + + E+KAA +T ++ +LP I+ ++ P
Sbjct: 566 GGNVKEKLLINNQRRDKKETLEAKRERKAAKTLAIITGAFVVCWLPFFIMALLMP 620
>gi|303244213|ref|ZP_07330550.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
gi|302485340|gb|EFL48267.1| Type II secretion system F domain protein [Methanothermococcus
okinawensis IH1]
Length = 559
Score = 35.6 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 28/183 (15%), Positives = 70/183 (38%), Gaps = 11/183 (6%)
Query: 108 RSEYSLNILLVVRLVVPII--FLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPS 165
R + L L+ +++ II ++ ++ K+ E P+Q+ +G
Sbjct: 260 RVDLKLRRYLIASIILTIITTGFLIWGKYVAEIPKVSEIPYQILFATGFTPLLIGGYVAK 319
Query: 166 VWISNLVQKRQSSIKRAWPDALDLLLICVES-GISIDQALRRVAEDIGGQSVPLSEEMLL 224
S +++K + +PD L L V + G ++ +L+ ++ PL++++
Sbjct: 320 REESLVIRK-----EYNFPDFLRSLGDSVSAKGGGMEDSLKYLSSH---DFGPLTKDLEQ 371
Query: 225 TIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERL 284
+S + A+ F T ++ ++ + G G + ++ + R
Sbjct: 372 LYKRVSIRIDNNKAWRLFGFETCSYLIQLFSEMFERCTFLGGDPGKASEIIGNNFRKIIN 431
Query: 285 MEA 287
+
Sbjct: 432 LRK 434
>gi|315637876|ref|ZP_07893066.1| general secretory pathway protein F [Campylobacter upsaliensis
JV21]
gi|315482117|gb|EFU72731.1| general secretory pathway protein F [Campylobacter upsaliensis
JV21]
Length = 393
Score = 35.6 bits (80), Expect = 9.8, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 58/159 (36%), Gaps = 9/159 (5%)
Query: 171 LVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELS 230
Q R + + + +G+SI +AL ++E+ S L + A L+
Sbjct: 45 KKQSRIKISDTLFCAFFKEFALLLNAGLSIKEALNLMSEN---SSKHLKDAAKELSANLN 101
Query: 231 FLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKK 290
+ VAF N + + ++ + E R++ ++ ++
Sbjct: 102 SGQSLSVAFGNLALNLNLSELSLIKM-----GEKTGNLAHIFSQIA-ELRTKLILNKKRF 155
Query: 291 AASLGPKLTVPMIIFFLPVLILVIIGPAILSIIDTMKDH 329
++ V + +F + ++ + P L I +++ +
Sbjct: 156 KKAIHYPCLVFLALFGAFLFLMFFVVPEFLDIFESLGAN 194
>gi|323473669|gb|ADX84275.1| type II secretion system protein [Sulfolobus islandicus REY15A]
gi|323476320|gb|ADX81558.1| type II secretion system protein [Sulfolobus islandicus HVE10/4]
Length = 616
Score = 35.6 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 59/169 (34%), Gaps = 3/169 (1%)
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
IG + P I+ + + L + + +G++ ++ + + +
Sbjct: 366 IGLLIAVIPPAVIAIRELREGTGYDVYVVSFLRAVAEGLRAGLNPATVVKNLKDS--PEM 423
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + A + AF+ R R + +L G+ +++ L
Sbjct: 424 GKFRDILNTIYAYSLLGVPIKDAFKIASERILDFSSRVSLISLADMIEIGSLTPETVESL 483
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ ++ + A + L P I L ++ +++G A+ ++I
Sbjct: 484 AEQVDAQIRIR-RNYNAKIRVLLYAPYIGIILALVASILLGNAMFTLIS 531
>gi|217792977|gb|ACK56087.1| blue-sensitive cone opsin [Hemibarbus labeo]
Length = 351
Score = 35.6 bits (80), Expect = 10.0, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 60/204 (29%), Gaps = 12/204 (5%)
Query: 107 FRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSV 166
RS + ++ + + + + ++ ++K + + G
Sbjct: 72 LRSHLNYILVNLAVANLWVSLFGSSLAFVSFWNKYFIFGSLGCKIEGFASTFGGMVG-LW 130
Query: 167 WISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTI 226
+S + +R I + + ++ +I + + PL
Sbjct: 131 SLSVVALERWLVICKPLGNFT------FKTHHAIIGCILPWIFALAAGLPPLFGWSRYIP 184
Query: 227 AELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI---GDSLRVLVSETRSER 283
L + N+ + + +GT + G L L R++
Sbjct: 185 EGLQCSCGPD--WYTTNNKYNNESYVMFLFCFCFAVPFGTILFCYGQLLITLKLAARAQA 242
Query: 284 LMEAEKKAASLGPKLTVPMIIFFL 307
+ +KA K+ V M+ FL
Sbjct: 243 DSASTQKAEKEVTKMVVVMVFGFL 266
>gi|163785310|ref|ZP_02179959.1| type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159879420|gb|EDP73275.1| type II secretion system protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 181
Score = 35.6 bits (80), Expect = 10.0, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 46/137 (33%), Gaps = 13/137 (9%)
Query: 179 IKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVA 238
I + + L + + +G+ + QAL + I + T ++ +
Sbjct: 41 INFNYAFFAEYLRLMIIAGVPLYQALHIMEGAIKNM--VFKTAIKNTREKIEIGKPFSES 98
Query: 239 FENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKL 298
+ + Q+ + + L + + ++ A+ A K+
Sbjct: 99 LKE--EGVFSPVITRMIAIGEQA----GQLDEQLNYISNYYYNKVDYLAQNIA-----KM 147
Query: 299 TVPMIIFFLPVLILVII 315
P++I + +LVI+
Sbjct: 148 IEPIVIGIVGAFMLVIM 164
>gi|227829232|ref|YP_002831011.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|229583213|ref|YP_002841612.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
gi|227455679|gb|ACP34366.1| type II secretion system protein [Sulfolobus islandicus L.S.2.15]
gi|228013929|gb|ACP49690.1| type II secretion system protein [Sulfolobus islandicus Y.N.15.51]
Length = 616
Score = 35.6 bits (80), Expect = 10.0, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 59/169 (34%), Gaps = 3/169 (1%)
Query: 156 IGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQS 215
IG + P I+ + + L + + +G++ ++ + + +
Sbjct: 366 IGLLIAVIPPAVIAIRELREGTGYDVYVVSFLRAVAEGLRAGLNPATVVKNLKDS--PEM 423
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSIGDSLRVL 275
+ + A + AF+ R R + +L G+ +++ L
Sbjct: 424 GKFRDILNTIYAYSLLGVPIKDAFKIASERILDFSSRVSLISLADMIEIGSLTPETVESL 483
Query: 276 VSETRSERLMEAEKKAASLGPKLTVPMIIFFLPVLILVIIGPAILSIID 324
+ ++ + A + L P I L ++ +++G A+ ++I
Sbjct: 484 AEQVDAQIRIR-RNYNAKIRVLLYAPYIGIILALVASILLGNAMFTLIS 531
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.123 0.273
Lambda K H
0.267 0.0374 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,582,191,144
Number of Sequences: 14124377
Number of extensions: 38968820
Number of successful extensions: 968224
Number of sequences better than 10.0: 9120
Number of HSP's better than 10.0 without gapping: 2568
Number of HSP's successfully gapped in prelim test: 6552
Number of HSP's that attempted gapping in prelim test: 957037
Number of HSP's gapped (non-prelim): 13614
length of query: 329
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 190
effective length of database: 2,879,505,227
effective search space: 547105993130
effective search space used: 547105993130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 81 (35.9 bits)