RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780721|ref|YP_003065134.1| pilus component protein
[Candidatus Liberibacter asiaticus str. psy62]
(329 letters)
>gnl|CDD|152940 pfam12506, DUF3713, Protein of unknown function (DUF3713). This
family of proteins is found in bacteria. Proteins in
this family are typically between 92 and 1225 amino
acids in length. There is a single completely conserved
residue S that may be functionally important.
Length = 116
Score = 33.2 bits (76), Expect = 0.096
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIV 99
+LE K + + ++ +++ TS K + + + D L++ K+ KA + +V
Sbjct: 1 KLENYFKDLITKNKVGQEETNTSSDKSTNKLKTKDADVDKLKDKKTKVETKA----KELV 56
Query: 100 NKLRAAGF-RSEYSLNILLVVRL 121
KL+ +YS IL+ +
Sbjct: 57 EKLKVTTAPSPQYSQIILVKSKN 79
>gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional.
Length = 309
Score = 32.1 bits (73), Expect = 0.23
Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 33/140 (23%)
Query: 138 YDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAWPDALDLLLICVESG 197
+ +L E ++ GA+++I G P V + L Q ++ K+ + I SG
Sbjct: 118 FRQLEEQVLEIESGAILVIS--GSLPPGVKLEKLTQLISAAQKQG------IRCIIDSSG 169
Query: 198 ISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQA 257
++ AL IG E + ELS L NR + TQ D VR A Q
Sbjct: 170 DALSAAL-----AIGN-----IELVKPNQKELSALVNRDL--------TQPDDVRKAAQE 211
Query: 258 LIQSDRYGTSIGDSLRVLVS 277
L+ S G + RV+VS
Sbjct: 212 LVNS-------GKAKRVVVS 224
>gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 31.4 bits (72), Expect = 0.37
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 111 YSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIG 157
+ L ++LV +VVP L LG W +L + P Q+ VG VI+
Sbjct: 566 FYLGVILVTLVVVPGAALALGTRWPPDV-RLWDSPAQVVVGLVIIAA 611
>gnl|CDD|163062 TIGR02891, CtaD_CoxA, cytochrome c oxidase, subunit I. These
families, as well as archaeal and eukaryotic cytochrome
c subunit I's are included within the superfamily model,
pfam00115.
Length = 506
Score = 30.3 bits (69), Expect = 0.63
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1 MPHYFFDLFDATELAVAITTAVSIFSLI 28
MP F A + +A+ T V +F+ I
Sbjct: 290 MPPLALAFFSAATMLIAVPTGVKVFNWI 317
>gnl|CDD|152452 pfam12017, Transposase_37, Transposase protein. Protein in this
family are transposases found in insects. This region is
about 230 amino acids in length and is found associated
with pfam05485.
Length = 236
Score = 30.2 bits (68), Expect = 0.81
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 47 SVAVEREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAG 106
+ +E + LR Q+I +L+K+ S R + +S+ L + K + E + L++ G
Sbjct: 15 TTLMENKSLR-QKIRALEKEMHSLRQQLEESQQLEKSLGK------IFTETQIKILKSGG 67
Query: 107 FRSEYS 112
RS ++
Sbjct: 68 KRSTFN 73
>gnl|CDD|177276 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 30.1 bits (68), Expect = 0.89
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 24/85 (28%)
Query: 39 GELEKRMKSVAVER--EILRK---QQI-------TSLQKDS--ASSRLRTRDSKSLRNFV 84
G ++R K A ER EI+RK +Q T L +D A LR K+ RN
Sbjct: 59 GAYDERRKDKADERSNEIIRKLTPEQRREAIKNGTLLYQDDPYAMEALRF---KTGRN-- 113
Query: 85 KKLNLKAILVDENIVNKLRAAGFRS 109
A LVD+ + K++ FR+
Sbjct: 114 -----AAYLVDDEVAQKIKNGEFRT 133
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 29.4 bits (66), Expect = 1.2
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 196 SGISIDQ-ALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNA 254
SG S+ AL R+ E GG ++MLL +RQV + + QM VR A
Sbjct: 53 SGKSVTALALMRLLEQAGGLVQ--CDKMLLR------RRSRQVIELSEQSAAQMRHVRGA 104
Query: 255 TQALIQSD---------RYGTSIGDSLRVLVSETRSERLMEAEK 289
A+I + G I +S+R+ +R E ++EA++
Sbjct: 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKR 148
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111.
Members of this protein family probable
glycosyltransferases of family 2, whose genes are near
those for Gram-positive proteins (TIGR03110) related to
the proposed exosortase (TIGR02602).
Length = 439
Score = 28.9 bits (65), Expect = 1.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 113 LNILLVVRLVVPIIFLILGIIWIFGYDKL--LEYPFQLRVGAVILI 156
+ +V R++ F +IW F L L YP +L VG+ +LI
Sbjct: 305 FSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLI 350
>gnl|CDD|181429 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 789
Score = 28.2 bits (63), Expect = 3.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 209 EDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNR 245
EDI + VP++ ML + +L+F PNR+V N +R
Sbjct: 511 EDIE-RVVPIAIRMLDNVIDLNFYPNRKVKATNLKSR 546
>gnl|CDD|185334 PRK15437, PRK15437, histidine ABC transporter substrate-binding
protein HisJ; Provisional.
Length = 259
Score = 27.7 bits (61), Expect = 4.7
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 6 FDLFDATELAVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQQITSLQK 65
FD+ A EL I T + +IPSL + +++ M S+++ + R+Q+I K
Sbjct: 51 FDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEK--RQQEIAFTDK 108
Query: 66 -DSASSRLRTRDSKSLRNFVKKLNLKAILV 94
+A SRL + ++ V+ L K + V
Sbjct: 109 LYAADSRLVVAKNSDIQPTVESLKGKRVGV 138
>gnl|CDD|152308 pfam11872, DUF3392, Protein of unknown function (DUF3392). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are about 110 amino acids in length.
Length = 106
Score = 27.2 bits (61), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 144 YPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKRAW 183
F LR A IL+ G+ VW+S + + +SI W
Sbjct: 48 RHFLLRTLAFILVCAFGYGLLIVWLSPWLARGLASIPNYW 87
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
gluaredoxin/ribonucleoside-diphosphate reductase subunit
beta; Provisional.
Length = 410
Score = 26.9 bits (59), Expect = 6.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 100 NKLRAAGFRSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVI 154
+ ++ A F +E + NILLV + + + +G + I GYD L+ R G VI
Sbjct: 36 DDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-----RAGEVI 85
>gnl|CDD|181420 PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase;
Reviewed.
Length = 298
Score = 26.9 bits (60), Expect = 7.4
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 20/107 (18%)
Query: 3 HYFFDLFDATELAVAITTA----VSIFSLIYAVVIPSLGSGELEKRMKSVAVEREILRKQ 58
D + + +TTA +FSL A ++ + + +KS A E++ K+
Sbjct: 103 ENLLDALK-KKRPIIVTTAHYGYWELFSLALAAYYGAVSI--VGRLLKS-APINEMISKR 158
Query: 59 Q----ITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNK 101
+ I + K A K L +K+ ILVD+N+V K
Sbjct: 159 REQFGIELIDKKGAM--------KELLKALKQGRALGILVDQNVVPK 197
>gnl|CDD|150625 pfam09971, DUF2206, Predicted membrane protein (DUF2206). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 716
Score = 27.0 bits (60), Expect = 7.7
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 108 RSEYSLNILLVVRLVVPIIFLILGIIWIFGYDKLLE---YPFQLRVGAVILIGYVGFCAP 164
+ Y NILL++ ++ LI +I + G+ + YPF + + A+ L+ + +
Sbjct: 168 MNYYHNNILLLL-----LLILIALVILLVGFKNIFPKKYYPFAIFIIALSLLWHNSLISN 222
Query: 165 SVWI 168
+W
Sbjct: 223 YLWG 226
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.139 0.390
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,287,206
Number of extensions: 342961
Number of successful extensions: 1391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1390
Number of HSP's successfully gapped: 51
Length of query: 329
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 235
Effective length of database: 3,963,321
Effective search space: 931380435
Effective search space used: 931380435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)