RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780721|ref|YP_003065134.1| pilus component protein
[Candidatus Liberibacter asiaticus str. psy62]
(329 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 45.7 bits (108), Expect = 2e-05
Identities = 64/349 (18%), Positives = 101/349 (28%), Gaps = 149/349 (42%)
Query: 18 ITTAVSIFSLI-------YAVVIPSLGS--GELEKRMK-----------SVAVEREILRK 57
++ +S LI Y V LG GEL +K +VA+
Sbjct: 232 LSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI------- 283
Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117
A + + +S F +
Sbjct: 284 ----------AETD--SWES-----F-----------FVS-------------------- 295
Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV--GFCAPS--VWISNL-- 171
VR + ++F +I G YP + IL + PS + ISNL
Sbjct: 296 -VRKAITVLF------FI-GVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 172 --VQKRQSSIKRAWPD--ALDLLLI-----CVESG--IS---IDQALRRVAEDIGG-QS- 215
VQ + P +++ L+ V SG S ++ LR+ G QS
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ----SDR-------- 263
+P SE L FLP F + + A+ + + ++
Sbjct: 407 IPFSERKL-KF-SNRFLP-VASPFHSHL-------LVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 264 ---YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309
Y T G LR + S+ ++ V I LPV
Sbjct: 457 IPVYDTFDGSDLR---------------VLSGSISERI-VDC-IIRLPV 488
Score = 38.4 bits (89), Expect = 0.003
Identities = 67/321 (20%), Positives = 100/321 (31%), Gaps = 135/321 (42%)
Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREIL-----RKQQI---TSLQ-- 64
AVAI S S +V K++ +L R + TSL
Sbjct: 280 AVAIAETDSWESFFVSVR-------------KAI----TVLFFIGVRCYEAYPNTSLPPS 322
Query: 65 --KDSA-------SSRLRTRD-SKS-LRNFVKKLN--L---KAI---LV--DENIVNKLR 103
+DS S L + ++ ++++V K N L K + LV +N+V
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---- 378
Query: 104 AAG-FRSEYSLNILLVVRLV----------VPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152
+G +S Y LN+ L R +P F KL F R
Sbjct: 379 VSGPPQSLYGLNLTL--RKAKAPSGLDQSRIP-----------FSERKL---KFSNR--- 419
Query: 153 VIL-IGYVGFCAP--SVWISN---LVQKRQSSIKRAWPDALDLLLICV---ESGISIDQA 203
L + +P S + L+ K ++ A D + I V G
Sbjct: 420 -FLPVA-----SPFHSHLLVPASDLINKDLVKNNVSFN-AKD-IQIPVYDTFDG----SD 467
Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE---NFYNRTQMDCVRNATQALIQ 260
LR ++ I + I L V +E F AT L
Sbjct: 468 LRVLSGSI----SERIVDC---IIRL------PVKWETTTQF----------KATHIL-- 502
Query: 261 SDRYGTSIGDS-LRVLVSETR 280
D +G G S L VL +
Sbjct: 503 -D-FGPG-GASGLGVLTHRNK 520
Score = 36.8 bits (85), Expect = 0.006
Identities = 73/395 (18%), Positives = 105/395 (26%), Gaps = 195/395 (49%)
Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKS--LRNFVKKLNLKA-ILVDENIVNKLRAA 105
E L I +L T ++N++ A I+ K +A
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-----TARIMAKRPFDKKSNSA 144
Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFG-------Y-DKLLE----Y-PFQLRVGA 152
FR+ N +LV IFG Y ++L + Y VG
Sbjct: 145 LFRAVGEGN----AQLVA-----------IFGGQGNTDDYFEELRDLYQTYHVL---VGD 186
Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKR--------AW-------PDALDLL------- 190
+I F A ++ S L++ + K W PD D L
Sbjct: 187 LI-----KFSAETL--SELIRTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLSIPISC 238
Query: 191 -LICV------------------E-----------S-GI-------------SIDQALRR 206
LI V E S G+ S ++R+
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 207 VAE---DIG--GQ------SVPL-----SEE--------ML----LTIAEL--------S 230
IG S+P S E ML LT ++ S
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 231 FLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI---GD--SLRVLVSETRSERL 284
LP +QV +L+ + ++ G SL L R
Sbjct: 359 HLPAGKQVEI-----------------SLVNGAK---NLVVSGPPQSLYGLNLTLR---- 394
Query: 285 MEAEKKAASLGPKLTVPMIIF----------FLPV 309
+ KA S L I F FLPV
Sbjct: 395 ---KAKAPS---GLDQSRIPFSERKLKFSNRFLPV 423
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.1 bits (87), Expect = 0.003
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 14/43 (32%)
Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93
E++ L+K LQ AS +L DS L +KA +
Sbjct: 18 EKQALKK-----LQ---ASLKLYADDS------APALAIKATM 46
Score = 28.8 bits (63), Expect = 1.7
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 11/23 (47%)
Query: 202 QALRRV-------AEDIGGQSVP 217
QAL+++ A+D S P
Sbjct: 20 QALKKLQASLKLYADD----SAP 38
Score = 28.4 bits (62), Expect = 2.4
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 22/47 (46%)
Query: 256 QAL--IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300
QAL +Q+ SL+ + A+ A +L K T+
Sbjct: 20 QALKKLQA---------SLK-----------LYADDSAPALAIKATM 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.3 bits (67), Expect = 0.59
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 51 EREILRK---QQITSLQKDSASSRL-----RTRDSKSLRNFVKKLNLKAILVDEN-IVNK 101
E E +RK +Q LQ+ A+S++ R + K L + ++ ++ V++N I N+
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR---QSEQVEKNKINNR 139
Query: 102 LRAAGFRSEYSLNIL 116
+ F + +I+
Sbjct: 140 IADKAFYQQPDADII 154
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus VF5} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A*
2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A*
3f4i_A* 3f4j_A* 3gjd_A* 3gwu_A* 3gwv_A* 3gww_A* 3gjc_A*
2qju_A*
Length = 519
Score = 29.8 bits (66), Expect = 0.93
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLL--EYPFQLRVGAVILIGYVGFCAPSVWI 168
V+R + P +L ++W Y + E + + + +IG F V++
Sbjct: 450 YVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFL 503
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase;
2.99A {Pseudomonas aeruginosa PAO1}
Length = 437
Score = 29.4 bits (64), Expect = 1.1
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 219 SEEMLLTIA---ELSFLPNRQVAFENFYNRTQMDCVRNATQ-ALIQ---------SDRYG 265
SEE L ++ ++ L NR F + + V L +G
Sbjct: 5 SEEKLREVSSQDPVTGLYNRS-HFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHG 63
Query: 266 TSIGDSLRVLVSETRSERLME 286
S D L ++ E+ E
Sbjct: 64 LSGIDLLLGQLAGLMREQFGE 84
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 28.3 bits (62), Expect = 2.5
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 16/139 (11%)
Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL----------------NILLVVRL 121
LR ++ L D ++ LRA F + + IL
Sbjct: 35 AELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHY 94
Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181
+ + DK + +GAV L + + NLV + +S ++
Sbjct: 95 DEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQY 154
Query: 182 AWPDALDLLLICVESGISI 200
P VE+ +I
Sbjct: 155 RLPACSRAAGHLVETSCTI 173
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein,
multiprotein-pigment complex, photosynthesis; HET: CL1
PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 2o01_A* 2wsc_A* 2wse_A* 2wsf_A*
Length = 755
Score = 27.5 bits (61), Expect = 4.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
RA+G +E+ L + LV+ + L G
Sbjct: 147 WRASGITNEFQLYCTAIGGLVMAGLMLFAGW 177
>2of5_H Leucine-rich repeat and death domain-containing protein; death
domain complex, apoptosis; 3.20A {Homo sapiens}
Length = 118
Score = 27.3 bits (60), Expect = 5.1
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 17/111 (15%)
Query: 195 ESGISIDQALRRVAEDIG------GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248
E+G L VA +G + +S + I + ++ +
Sbjct: 7 ETGFLTQSNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAER 66
Query: 249 DCVRNAT-----QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294
+ QAL QSDR + + +R ++ R + + AA+L
Sbjct: 67 QAGQPGAVGLLVQALEQSDR--QDVAEEVRAVLELGR----RKYQDSAAAL 111
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein
binding, sugar binding protein; 2.41A {Bacillus
stearothermophilus}
Length = 412
Score = 26.9 bits (59), Expect = 5.7
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253
+D+ + + + + + +EE+ I+ L R V + Y ++ + +R+
Sbjct: 97 YNYATKLDKMRQELKAAVDAKDLKKAEELYHKISY--ELKTRTVILDRVYGQSTRELLRS 154
Query: 254 ----ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK-----KAASLGPKLTVPM 302
QAL Y ++ R ++ L +A+
Sbjct: 155 TFKADAQALRDRLIYDITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKVTDAFKA 212
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 26.3 bits (57), Expect = 9.8
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 34 PSLGSGELEKRMKSVAVEREILRKQ-QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92
P LG+ + +K M A + ++ + S ++ + SK+ N L
Sbjct: 21 PDLGTDDDDKAMACSAGPSGFFTRLGRLIKEKAKSDVEKVFSGFSKTRENLAVIDELLLF 80
Query: 93 LVDENIVNKLR 103
L
Sbjct: 81 WNLAETDRVLD 91
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.139 0.390
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,639,298
Number of extensions: 117437
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 26
Length of query: 329
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 236
Effective length of database: 3,438,538
Effective search space: 811494968
Effective search space used: 811494968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.1 bits)