RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] (329 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 45.7 bits (108), Expect = 2e-05 Identities = 64/349 (18%), Positives = 101/349 (28%), Gaps = 149/349 (42%) Query: 18 ITTAVSIFSLI-------YAVVIPSLGS--GELEKRMK-----------SVAVEREILRK 57 ++ +S LI Y V LG GEL +K +VA+ Sbjct: 232 LSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI------- 283 Query: 58 QQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSLNILL 117 A + + +S F + Sbjct: 284 ----------AETD--SWES-----F-----------FVS-------------------- 295 Query: 118 VVRLVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYV--GFCAPS--VWISNL-- 171 VR + ++F +I G YP + IL + PS + ISNL Sbjct: 296 -VRKAITVLF------FI-GVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346 Query: 172 --VQKRQSSIKRAWPD--ALDLLLI-----CVESG--IS---IDQALRRVAEDIGG-QS- 215 VQ + P +++ L+ V SG S ++ LR+ G QS Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406 Query: 216 VPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRNATQALIQ----SDR-------- 263 +P SE L FLP F + + A+ + + ++ Sbjct: 407 IPFSERKL-KF-SNRFLP-VASPFHSHL-------LVPASDLINKDLVKNNVSFNAKDIQ 456 Query: 264 ---YGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTVPMIIFFLPV 309 Y T G LR + S+ ++ V I LPV Sbjct: 457 IPVYDTFDGSDLR---------------VLSGSISERI-VDC-IIRLPV 488 Score = 38.4 bits (89), Expect = 0.003 Identities = 67/321 (20%), Positives = 100/321 (31%), Gaps = 135/321 (42%) Query: 15 AVAITTAVSIFSLIYAVVIPSLGSGELEKRMKSVAVEREIL-----RKQQI---TSLQ-- 64 AVAI S S +V K++ +L R + TSL Sbjct: 280 AVAIAETDSWESFFVSVR-------------KAI----TVLFFIGVRCYEAYPNTSLPPS 322 Query: 65 --KDSA-------SSRLRTRD-SKS-LRNFVKKLN--L---KAI---LV--DENIVNKLR 103 +DS S L + ++ ++++V K N L K + LV +N+V Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---- 378 Query: 104 AAG-FRSEYSLNILLVVRLV----------VPIIFLILGIIWIFGYDKLLEYPFQLRVGA 152 +G +S Y LN+ L R +P F KL F R Sbjct: 379 VSGPPQSLYGLNLTL--RKAKAPSGLDQSRIP-----------FSERKL---KFSNR--- 419 Query: 153 VIL-IGYVGFCAP--SVWISN---LVQKRQSSIKRAWPDALDLLLICV---ESGISIDQA 203 L + +P S + L+ K ++ A D + I V G Sbjct: 420 -FLPVA-----SPFHSHLLVPASDLINKDLVKNNVSFN-AKD-IQIPVYDTFDG----SD 467 Query: 204 LRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFE---NFYNRTQMDCVRNATQALIQ 260 LR ++ I + I L V +E F AT L Sbjct: 468 LRVLSGSI----SERIVDC---IIRL------PVKWETTTQF----------KATHIL-- 502 Query: 261 SDRYGTSIGDS-LRVLVSETR 280 D +G G S L VL + Sbjct: 503 -D-FGPG-GASGLGVLTHRNK 520 Score = 36.8 bits (85), Expect = 0.006 Identities = 73/395 (18%), Positives = 105/395 (26%), Gaps = 195/395 (49%) Query: 49 AVEREILRKQQITSLQKDSASSRLRTRDSKS--LRNFVKKLNLKA-ILVDENIVNKLRAA 105 E L I +L T ++N++ A I+ K +A Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-----TARIMAKRPFDKKSNSA 144 Query: 106 GFRSEYSLNILLVVRLVVPIIFLILGIIWIFG-------Y-DKLLE----Y-PFQLRVGA 152 FR+ N +LV IFG Y ++L + Y VG Sbjct: 145 LFRAVGEGN----AQLVA-----------IFGGQGNTDDYFEELRDLYQTYHVL---VGD 186 Query: 153 VILIGYVGFCAPSVWISNLVQKRQSSIKR--------AW-------PDALDLL------- 190 +I F A ++ S L++ + K W PD D L Sbjct: 187 LI-----KFSAETL--SELIRTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLSIPISC 238 Query: 191 -LICV------------------E-----------S-GI-------------SIDQALRR 206 LI V E S G+ S ++R+ Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298 Query: 207 VAE---DIG--GQ------SVPL-----SEE--------ML----LTIAEL--------S 230 IG S+P S E ML LT ++ S Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358 Query: 231 FLP-NRQVAFENFYNRTQMDCVRNATQALIQSDRYGTSI---GD--SLRVLVSETRSERL 284 LP +QV +L+ + ++ G SL L R Sbjct: 359 HLPAGKQVEI-----------------SLVNGAK---NLVVSGPPQSLYGLNLTLR---- 394 Query: 285 MEAEKKAASLGPKLTVPMIIF----------FLPV 309 + KA S L I F FLPV Sbjct: 395 ---KAKAPS---GLDQSRIPFSERKLKFSNRFLPV 423 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 38.1 bits (87), Expect = 0.003 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 14/43 (32%) Query: 51 EREILRKQQITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAIL 93 E++ L+K LQ AS +L DS L +KA + Sbjct: 18 EKQALKK-----LQ---ASLKLYADDS------APALAIKATM 46 Score = 28.8 bits (63), Expect = 1.7 Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 11/23 (47%) Query: 202 QALRRV-------AEDIGGQSVP 217 QAL+++ A+D S P Sbjct: 20 QALKKLQASLKLYADD----SAP 38 Score = 28.4 bits (62), Expect = 2.4 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 22/47 (46%) Query: 256 QAL--IQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASLGPKLTV 300 QAL +Q+ SL+ + A+ A +L K T+ Sbjct: 20 QALKKLQA---------SLK-----------LYADDSAPALAIKATM 46 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 30.3 bits (67), Expect = 0.59 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 12/75 (16%) Query: 51 EREILRK---QQITSLQKDSASSRL-----RTRDSKSLRNFVKKLNLKAILVDEN-IVNK 101 E E +RK +Q LQ+ A+S++ R + K L + ++ ++ V++N I N+ Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR---QSEQVEKNKINNR 139 Query: 102 LRAAGFRSEYSLNIL 116 + F + +I+ Sbjct: 140 IADKAFYQQPDADII 154 >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus VF5} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3gjd_A* 3gwu_A* 3gwv_A* 3gww_A* 3gjc_A* 2qju_A* Length = 519 Score = 29.8 bits (66), Expect = 0.93 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLL--EYPFQLRVGAVILIGYVGFCAPSVWI 168 V+R + P +L ++W Y + E + + + +IG F V++ Sbjct: 450 YVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFL 503 >3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1} Length = 437 Score = 29.4 bits (64), Expect = 1.1 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 14/81 (17%) Query: 219 SEEMLLTIA---ELSFLPNRQVAFENFYNRTQMDCVRNATQ-ALIQ---------SDRYG 265 SEE L ++ ++ L NR F + + V L +G Sbjct: 5 SEEKLREVSSQDPVTGLYNRS-HFLDLMDAAVQQAVTARKPSTLAYIHLNGYPSLQADHG 63 Query: 266 TSIGDSLRVLVSETRSERLME 286 S D L ++ E+ E Sbjct: 64 LSGIDLLLGQLAGLMREQFGE 84 >1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Score = 28.3 bits (62), Expect = 2.5 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 16/139 (11%) Query: 78 KSLRNFVKKLNLKAILVDENIVNKLRAAGFRSEYSL----------------NILLVVRL 121 LR ++ L D ++ LRA F + + IL Sbjct: 35 AELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHY 94 Query: 122 VVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILIGYVGFCAPSVWISNLVQKRQSSIKR 181 + + DK + +GAV L + + NLV + +S ++ Sbjct: 95 DEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQY 154 Query: 182 AWPDALDLLLICVESGISI 200 P VE+ +I Sbjct: 155 RLPACSRAAGHLVETSCTI 173 >1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 2o01_A* 2wsc_A* 2wse_A* 2wsf_A* Length = 755 Score = 27.5 bits (61), Expect = 4.3 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132 RA+G +E+ L + LV+ + L G Sbjct: 147 WRASGITNEFQLYCTAIGGLVMAGLMLFAGW 177 >2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens} Length = 118 Score = 27.3 bits (60), Expect = 5.1 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 17/111 (15%) Query: 195 ESGISIDQALRRVAEDIG------GQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQM 248 E+G L VA +G + +S + I + ++ + Sbjct: 7 ETGFLTQSNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAER 66 Query: 249 DCVRNAT-----QALIQSDRYGTSIGDSLRVLVSETRSERLMEAEKKAASL 294 + QAL QSDR + + +R ++ R + + AA+L Sbjct: 67 QAGQPGAVGLLVQALEQSDR--QDVAEEVRAVLELGR----RKYQDSAAAL 111 >2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar binding protein; 2.41A {Bacillus stearothermophilus} Length = 412 Score = 26.9 bits (59), Expect = 5.7 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 11/118 (9%) Query: 194 VESGISIDQALRRVAEDIGGQSVPLSEEMLLTIAELSFLPNRQVAFENFYNRTQMDCVRN 253 +D+ + + + + + +EE+ I+ L R V + Y ++ + +R+ Sbjct: 97 YNYATKLDKMRQELKAAVDAKDLKKAEELYHKISY--ELKTRTVILDRVYGQSTRELLRS 154 Query: 254 ----ATQALIQSDRYGTSIGDSLRVLVSETRSERLMEAEK-----KAASLGPKLTVPM 302 QAL Y ++ R ++ L +A+ Sbjct: 155 TFKADAQALRDRLIYDITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKVTDAFKA 212 >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Length = 359 Score = 26.3 bits (57), Expect = 9.8 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%) Query: 34 PSLGSGELEKRMKSVAVEREILRKQ-QITSLQKDSASSRLRTRDSKSLRNFVKKLNLKAI 92 P LG+ + +K M A + ++ + S ++ + SK+ N L Sbjct: 21 PDLGTDDDDKAMACSAGPSGFFTRLGRLIKEKAKSDVEKVFSGFSKTRENLAVIDELLLF 80 Query: 93 LVDENIVNKLR 103 L Sbjct: 81 WNLAETDRVLD 91 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.139 0.390 Gapped Lambda K H 0.267 0.0547 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,639,298 Number of extensions: 117437 Number of successful extensions: 435 Number of sequences better than 10.0: 1 Number of HSP's gapped: 433 Number of HSP's successfully gapped: 26 Length of query: 329 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 236 Effective length of database: 3,438,538 Effective search space: 811494968 Effective search space used: 811494968 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 57 (26.1 bits)