RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780721|ref|YP_003065134.1| pilus component protein
[Candidatus Liberibacter asiaticus str. psy62]
         (329 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 30.5 bits (68), Expect = 0.21
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLL--EYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174
            V+R + P    +L ++W   Y   +  E  + + +    +IG   F    V+++   + 
Sbjct: 446 YVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRN 505

Query: 175 RQSS 178
            +S+
Sbjct: 506 HESA 509


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 27.9 bits (62), Expect = 1.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133
            RA+G  +E+ L    +  LV+  + L  G  
Sbjct: 135 WRASGITNEFQLYCTAIGGLVMAGLMLFAGWF 166


>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding
           domain of phage mu transposase {Bacteriophage mu [TaxId:
           10677]}
          Length = 99

 Score = 26.7 bits (59), Expect = 2.8
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 161 FCAPSVW--ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212
           +   ++W    N    ++   ++ W  A+      +  GIS   A   VA    
Sbjct: 12  YDREALWSKWDNASDSQRRLAEK-WLPAVQAADEMLNQGISTKTAFATVAGHYQ 64


>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma
          subunit {Cow (Bos taurus) [TaxId: 9913]}
          Length = 272

 Score = 25.6 bits (55), Expect = 6.4
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 6/34 (17%)

Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73
          ++ +R+KS+   + I   Q+IT   K  A+++  
Sbjct: 5  DITRRLKSI---KNI---QKITKSMKMVAAAKYA 32


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 25.2 bits (55), Expect = 8.9
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132
               G R+   L    +  L++  + L  G 
Sbjct: 123 WYTIGMRTNGDLYQGAIFLLILASLALFAGW 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.390 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,141,055
Number of extensions: 50968
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 9
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.8 bits)