RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] (329 letters) >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 Score = 30.5 bits (68), Expect = 0.21 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 117 LVVRLVVPIIFLILGIIWIFGYDKLL--EYPFQLRVGAVILIGYVGFCAPSVWISNLVQK 174 V+R + P +L ++W Y + E + + + +IG F V+++ + Sbjct: 446 YVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRN 505 Query: 175 RQSS 178 +S+ Sbjct: 506 HESA 509 >d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus [TaxId: 32046]} Length = 743 Score = 27.9 bits (62), Expect = 1.3 Identities = 9/32 (28%), Positives = 15/32 (46%) Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGII 133 RA+G +E+ L + LV+ + L G Sbjct: 135 WRASGITNEFQLYCTAIGGLVMAGLMLFAGWF 166 >d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]} Length = 99 Score = 26.7 bits (59), Expect = 2.8 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 161 FCAPSVW--ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIG 212 + ++W N ++ ++ W A+ + GIS A VA Sbjct: 12 YDREALWSKWDNASDSQRRLAEK-WLPAVQAADEMLNQGISTKTAFATVAGHYQ 64 >d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272 Score = 25.6 bits (55), Expect = 6.4 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Query: 40 ELEKRMKSVAVEREILRKQQITSLQKDSASSRLR 73 ++ +R+KS+ + I Q+IT K A+++ Sbjct: 5 DITRRLKSI---KNI---QKITKSMKMVAAAKYA 32 >d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]} Length = 739 Score = 25.2 bits (55), Expect = 8.9 Identities = 6/31 (19%), Positives = 11/31 (35%) Query: 102 LRAAGFRSEYSLNILLVVRLVVPIIFLILGI 132 G R+ L + L++ + L G Sbjct: 123 WYTIGMRTNGDLYQGAIFLLILASLALFAGW 153 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.139 0.390 Gapped Lambda K H 0.267 0.0477 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,141,055 Number of extensions: 50968 Number of successful extensions: 170 Number of sequences better than 10.0: 1 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 9 Length of query: 329 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 243 Effective length of database: 1,226,816 Effective search space: 298116288 Effective search space used: 298116288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (24.8 bits)