HHsearch alignment for GI: 254780722 and conserved domain: PRK06041
>PRK06041 flagellar assembly protein J; Reviewed.
Probab=99.58 E-value=4.4e-12 Score=93.57 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCH
Q ss_conf 69999999999999999999999995699989999999992--48428999999999863-0388889999977534873
Q gi|254780722|r 3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH-LGLSLSESISRMVRYMPLQ 79 (187)
Q Consensus 3 ~~~~~R~~~~~~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~--~~~~l~~e~~~i~~~~~-~G~~~~~al~~~~~~~~~~ 79 (187)
T Consensus 63 ~~~~~~~~~I~~~m~~~iT~M~~LSt~~~~r~~if~~Ls~~~ey~G~la~e~~kI~~Lv~~w~~sl~eA~r~~A~rtpS~ 142 (547)
T PRK06041 63 IKLDSKRLKINNDLLFFITYMAVLSTADLDRDEIFRYLSEEKEYLGQLSKEFKKIYVLVKKWNYSLAEACRFLAKRTPSD 142 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
T ss_conf 88754899888630899999999982699989999998843122068899999999999986816899999997629977
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf 4799999999987425746899999999999999999999998643456779999999999999999787
Q gi|254780722|r 80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP 149 (187)
Q Consensus 80 ~~~~~~~~l~~~~~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~ 149 (187)
T Consensus 143 ~~~dFLdRlA~si~SG~~~~eFL~~Eq~~~~~~y~~~ye~~LesLd~~~e~YvSll~S~~f~~v~~~I~~ 212 (547)
T PRK06041 143 RLSDFLDRLAYSIDSGEPLKEFLKQEQDTVMEIYKTFYERALESLDKWKDAYVSLLLSVTFVATFIIISP 212 (547)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999888669987999999999999999999999999999999999999999999999999999