HHsearch alignment for GI: 254780722 and conserved domain: PRK06041

>PRK06041 flagellar assembly protein J; Reviewed.
Probab=99.58  E-value=4.4e-12  Score=93.57  Aligned_cols=147  Identities=14%  Similarity=0.132  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCH
Q ss_conf             69999999999999999999999995699989999999992--48428999999999863-0388889999977534873
Q gi|254780722|r    3 HLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQ--SSDPVRSEFRRVIETQH-LGLSLSESISRMVRYMPLQ   79 (187)
Q Consensus         3 ~~~~~R~~~~~~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~--~~~~l~~e~~~i~~~~~-~G~~~~~al~~~~~~~~~~   79 (187)
T Consensus        63 ~~~~~~~~~I~~~m~~~iT~M~~LSt~~~~r~~if~~Ls~~~ey~G~la~e~~kI~~Lv~~w~~sl~eA~r~~A~rtpS~  142 (547)
T PRK06041         63 IKLDSKRLKINNDLLFFITYMAVLSTADLDRDEIFRYLSEEKEYLGQLSKEFKKIYVLVKKWNYSLAEACRFLAKRTPSD  142 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
T ss_conf             88754899888630899999999982699989999998843122068899999999999986816899999997629977


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Q ss_conf             4799999999987425746899999999999999999999998643456779999999999999999787
Q gi|254780722|r   80 EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSP  149 (187)
Q Consensus        80 ~~~~~~~~l~~~~~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~  149 (187)
T Consensus       143 ~~~dFLdRlA~si~SG~~~~eFL~~Eq~~~~~~y~~~ye~~LesLd~~~e~YvSll~S~~f~~v~~~I~~  212 (547)
T PRK06041        143 RLSDFLDRLAYSIDSGEPLKEFLKQEQDTVMEIYKTFYERALESLDKWKDAYVSLLLSVTFVATFIIISP  212 (547)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999888669987999999999999999999999999999999999999999999999999999