HHsearch alignment for GI: 254780722 and conserved domain: PRK10573
>PRK10573 type IV pilin biogenesis protein; Provisional.
Probab=99.15 E-value=7.4e-09 Score=73.65 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999995699989999999992484-2899999999986303888899999775348734799999999987
Q gi|254780722|r 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 (187)
Q Consensus 14 ~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 92 (187)
T Consensus 261 ~~~~rf~~~L~~ll~sGv~l~~AL~~~~~~~~n~~~~~~l~~~~~~v~~G~sls~al~~------~~~fp~~~~~mi~vG 334 (397)
T PRK10573 261 QKLSQIFTILALTQSAGIPFLQGLESAAESIRCPYWQQALTQIQHQISQGHPIWLALKN------HGEFSPLCLQLVRTG 334 (397)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH------CCCCCHHHHHHHHHH
T ss_conf 99999999999998689979999999998758999999999999998769328999873------799989999999998
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42574689999999999999999999999864345677
Q gi|254780722|r 93 QLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASA 130 (187)
Q Consensus 93 ~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~ 130 (187)
T Consensus 335 EesG~L~~~L~~~a~~ye~~~~~~i~~l~~llEPili~ 372 (397)
T PRK10573 335 EESGSLDLMLENLAHHHRQQTLALADNLAALLEPLLLI 372 (397)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65264999999999999999999999999999899999