HHsearch alignment for GI: 254780722 and conserved domain: TIGR02120
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850 This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=99.77 E-value=1.2e-16 Score=121.78 Aligned_cols=137 Identities=17% Similarity=0.257 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999995699989999999992484-289999999998630388889999977534873479999999998
Q gi|254780722|r 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 (187)
Q Consensus 13 ~~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 91 (187)
T Consensus 75 ~~~la~~TRQLATLl~AglPLeeaL~~l~~Q~e~~~~~~~l~~iR~~v~eG~~La~AL~~~P~~F-----~~lYralV~A 149 (414)
T TIGR02120 75 RAELALFTRQLATLLGAGLPLEEALAALLEQAEKPRLKSVLAAIRSRVLEGKSLADALAQEPRLF-----PPLYRALVAA 149 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCC-----CHHHHHHHHH
T ss_conf 99999999999999985340999999999625957899999999999861811689985088998-----8788999996
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
Q ss_conf 742574689999999999999999999999864345677999999999999999978789999950
Q gi|254780722|r 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLIN 157 (187)
Q Consensus 92 ~~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (187)
T Consensus 150 GE~SG~L~~VL~RLADylE~rq~lr~Ki~~AliYP---a~l~vVa~~vv~~Ll~~VVPkvV~~F~~ 212 (414)
T TIGR02120 150 GEASGALDAVLERLADYLEERQALRSKITTALIYP---AVLTVVAIGVVIFLLAYVVPKVVEQFAH 212 (414)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCCEECHHHC
T ss_conf 12478824689999889999999999999987658---9999999999999994204440310231