Query gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 187
No_of_seqs 118 out of 2435
Neff 9.5
Searched_HMMs 33803
Date Wed Jun 1 14:33:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780722.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3c1q_A General secretion path 99.5 1.4E-12 4E-17 96.3 12.0 111 13-128 11-122 (123)
2 >2ejw_A HDH, homoserine dehydr 53.3 11 0.00033 16.6 2.8 46 29-74 1-50 (164)
3 >1sxj_D Activator 1 41 kDa sub 30.9 30 0.00087 14.0 2.9 46 29-74 5-51 (98)
4 >2fna_A Conserved hypothetical 29.2 32 0.00093 13.8 2.9 43 14-56 32-74 (77)
5 >2qen_A Walker-type ATPase; un 27.5 34 0.001 13.6 4.2 41 16-56 36-76 (79)
6 >1eu8_A Trehalose/maltose bind 24.6 23 0.00067 14.7 0.5 28 48-75 70-98 (107)
7 >3hsq_A Acyl-[acyl-carrier-pro 22.6 42 0.0012 13.1 6.2 38 25-62 14-52 (57)
8 >2hl7_A Cytochrome C-type biog 18.5 51 0.0015 12.5 4.3 36 44-79 40-76 (84)
9 >1ef4_A Subunit N, DNA-directe 18.2 52 0.0015 12.5 2.9 28 46-73 11-38 (55)
10 >2waq_N DNA-directed RNA polym 17.7 53 0.0016 12.4 1.5 30 47-76 13-43 (66)
No 1
>>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A* (A:)
Probab=99.46 E-value=1.4e-12 Score=96.29 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999995699989999999992484-289999999998630388889999977534873479999999998
Q gi|254780722|r 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 (187)
Q Consensus 13 ~~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 91 (187)
..++|++++.++.++++|.|+.+|+..++++..+ +++++++.+.++++.|.++++||.+++.++|. ....++.+
T Consensus 11 ~~~~~~f~~~l~~ll~~G~~l~~al~~~~~~~~~~~l~~~~~~i~~~l~~G~~~~~Al~~~~~~~~~-----~~~~~i~~ 85 (123)
T 3c1q_A 11 TPDLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKVTEGYTLSDSLGDYPHVFDE-----LFRSXVAA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCSCHHHHHHHHHHHHHHHTTCCHHHHHTTCTTTSCH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCH-----HHHHHHHH
T ss_conf 9999999999999998699899999999714412899999999999998455399999875455869-----99999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7425746899999999999999999999998643456
Q gi|254780722|r 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKA 128 (187)
Q Consensus 92 ~~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~~~~ 128 (187)
++.||++.++|..+++.++++.+.+.+......+|.+
T Consensus 86 ge~~G~L~~~l~~~a~~~~~~~~~~~~~~~~l~~P~f 122 (123)
T 3c1q_A 86 GEKSGHLDSVLERLADYAENRQKXRSKLQQASENLYF 122 (123)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9874779999999999999999999999999998850
No 2
>>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus HB8} (A:126-289)
Probab=53.33 E-value=11 Score=16.59 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 699989999999992----4842899999999986303888899999775
Q gi|254780722|r 29 AGLPVSDAVAVIVGQ----SSDPVRSEFRRVIETQHLGLSLSESISRMVR 74 (187)
Q Consensus 29 aG~sl~~Al~~~a~~----~~~~l~~e~~~i~~~~~~G~~~~~al~~~~~ 74 (187)
||.|+.+.++.++.+ ..|-+.--...+..+++.|.++++++.+..+
T Consensus 1 AGiPii~~l~~l~g~~I~~i~GIlNGT~NyIL~~m~~g~~f~~al~eAq~ 50 (164)
T 2ejw_A 1 AGTPALSFLETLRGSELLELHGILNGTTLYILQEMEKGRTYAEALLEAQR 50 (164)
T ss_dssp TTSSSHHHHHHHTTSEEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 88637888874332221445542055888998787659988999999999
No 3
>>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} (D:256-353)
Probab=30.87 E-value=30 Score=14.01 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 6999899999999924-842899999999986303888899999775
Q gi|254780722|r 29 AGLPVSDAVAVIVGQS-SDPVRSEFRRVIETQHLGLSLSESISRMVR 74 (187)
Q Consensus 29 aG~sl~~Al~~~a~~~-~~~l~~e~~~i~~~~~~G~~~~~al~~~~~ 74 (187)
+|.+.++-++.+.+.. .++..+-...+..-+..|.+..+-+..+.+
T Consensus 5 ~g~p~p~~i~~il~~~~~~~~~~a~~~i~~li~~G~s~~dii~~l~~ 51 (98)
T 1sxj_D 5 AGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 51 (98)
T ss_dssp HTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 40478889999998765479999999999999859999999999999
No 4
>>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} (A:209-285)
Probab=29.22 E-value=32 Score=13.83 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999999956999899999999924842899999999
Q gi|254780722|r 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56 (187)
Q Consensus 14 ~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~~l~~e~~~i~ 56 (187)
+.+|.++.......--|.+..+|+..+.+....-+.+||....
T Consensus 32 dGIpGWLt~fG~~~~~~~~~~~al~~~~~~A~~l~~~El~~ll 74 (77)
T 2fna_A 32 GGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFL 74 (77)
T ss_dssp CSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8981699999999985466677777788766789999999999
No 5
>>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} (A:203-281)
Probab=27.48 E-value=34 Score=13.64 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999956999899999999924842899999999
Q gi|254780722|r 16 FPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVI 56 (187)
Q Consensus 16 l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~~l~~e~~~i~ 56 (187)
+|.++.......--|.+..+|+..+.+...+-+.+|+..+.
T Consensus 36 IpGWL~~fG~~~~~~~~~~~al~~~~~~A~~l~~~El~~l~ 76 (79)
T 2qen_A 36 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELR 76 (79)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82789999999864010234577776555678999999986
No 6
>>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} (A:175-230,A:359-409)
Probab=24.64 E-value=23 Score=14.72 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Q ss_conf 899999999986303-8888999997753
Q gi|254780722|r 48 VRSEFRRVIETQHLG-LSLSESISRMVRY 75 (187)
Q Consensus 48 l~~e~~~i~~~~~~G-~~~~~al~~~~~~ 75 (187)
+++.+..-..++-.| .++++||.+..++
T Consensus 70 is~~l~~~i~~al~G~~tpeeAl~~a~~~ 98 (107)
T 1eu8_A 70 LSEIIQKYVNSALAGKISPQEALDKAQKE 98 (107)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999985999999999999999
No 7
>>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* (A:203-259)
Probab=22.64 E-value=42 Score=13.08 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=21.4
Q ss_pred HHHHCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCC
Q ss_conf 999569998999999999248-42899999999986303
Q gi|254780722|r 25 RSVRAGLPVSDAVAVIVGQSS-DPVRSEFRRVIETQHLG 62 (187)
Q Consensus 25 ~~l~aG~sl~~Al~~~a~~~~-~~l~~e~~~i~~~~~~G 62 (187)
...++|.++.+|++.+.+..+ .|--.+|-...+.-+-|
T Consensus 14 ~ly~~gl~~~eal~~l~~~~~~~pev~~~i~Fi~~S~RG 52 (57)
T 3hsq_A 14 VIYHSGISTRKALDELEASGNLIEQVKYIIKFFRDSDRG 52 (57)
T ss_dssp HHHSSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSC
T ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf 997079989999999985146889999999999728998
No 8
>>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=18.50 E-value=51 Score=12.54 Aligned_cols=36 Identities=25% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHCCCH
Q ss_conf 48428999999999-8630388889999977534873
Q gi|254780722|r 44 SSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQ 79 (187)
Q Consensus 44 ~~~~l~~e~~~i~~-~~~~G~~~~~al~~~~~~~~~~ 79 (187)
...|++.+++..++ .+..|.+-.+-...+..||+..
T Consensus 40 Sna~~A~dmR~~i~~~i~~G~sd~eI~~~lv~RYG~~ 76 (84)
T 2hl7_A 40 SNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDF 76 (84)
T ss_dssp CCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCE
T ss_conf 6778899999999999995999899999999970883
No 9
>>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=18.20 E-value=52 Score=12.50 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 4289999999998630388889999977
Q gi|254780722|r 46 DPVRSEFRRVIETQHLGLSLSESISRMV 73 (187)
Q Consensus 46 ~~l~~e~~~i~~~~~~G~~~~~al~~~~ 73 (187)
.++++.++.-...++.|.+..+||+++.
T Consensus 11 kvig~~we~y~~~~~~g~~~~~aLD~Lg 38 (55)
T 1ef4_A 11 KPVSAYFNEYQRRVADGEDPKDVLDDLG 38 (55)
T ss_dssp SCCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 6889999999999986999789998849
No 10
>>2waq_N DNA-directed RNA polymerase RPO10 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_N 2pmz_N 3hkz_N (N:)
Probab=17.68 E-value=53 Score=12.42 Aligned_cols=30 Identities=7% Similarity=0.164 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH-HHC
Q ss_conf 289999999998630388889999977-534
Q gi|254780722|r 47 PVRSEFRRVIETQHLGLSLSESISRMV-RYM 76 (187)
Q Consensus 47 ~l~~e~~~i~~~~~~G~~~~~al~~~~-~~~ 76 (187)
+++..++.-...++.|.+..+||++++ +|+
T Consensus 13 vig~~we~y~~~~~~g~~~~~aLD~Lgl~RY 43 (66)
T 2waq_N 13 LIADKWQPFITRVNAGENPGKVLDDLGVKRY 43 (66)
T ss_dssp CCGGGHHHHHHHHTTTCCHHHHHHHTTCCSH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHCCCCEE
T ss_conf 4799899999998769998999998699467
Done!