Query gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 187
No_of_seqs 118 out of 2435
Neff 9.5
Searched_HMMs 23785
Date Mon May 30 14:07:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780722.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c1q_A General secretion pathw 99.2 1.8E-10 7.6E-15 82.3 12.0 108 13-125 11-119 (123)
2 2whn_A PILC, pilus assembly pr 99.1 7.4E-10 3.1E-14 78.5 10.5 103 14-122 13-116 (116)
3 2iub_A CORA, divalent cation t 92.3 0.48 2E-05 24.1 12.1 53 126-179 304-356 (363)
4 3ajm_A Programmed cell death p 55.8 8.4 0.00035 16.4 4.1 94 27-121 31-126 (213)
5 3h74_A Pyridoxal kinase; PSI-I 41.3 14 0.00059 15.0 3.2 33 82-114 215-247 (282)
6 1xkp_A Putative membrane-bound 26.4 25 0.001 13.5 9.3 15 64-78 86-100 (246)
7 1gpj_A Glutamyl-tRNA reductase 22.4 30 0.0012 13.1 3.2 11 50-60 344-354 (404)
8 2hl7_A Cytochrome C-type bioge 20.6 32 0.0014 12.8 4.3 38 43-80 39-77 (84)
9 2imh_A Hypothetical protein UN 19.7 27 0.0011 13.3 0.8 77 22-98 56-160 (231)
10 3hsq_A Acyl-[acyl-carrier-prot 18.5 36 0.0015 12.5 5.1 41 48-88 206-248 (259)
No 1
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=99.22 E-value=1.8e-10 Score=82.27 Aligned_cols=108 Identities=19% Similarity=0.305 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999999995699989999999992484-289999999998630388889999977534873479999999998
Q gi|254780722|r 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQ 91 (187)
Q Consensus 13 ~~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 91 (187)
..++..|.+.++.++++|.|+.+|++.+++...+ .+++.+..+..+++.|.++.+|+.+... .|......++.+
T Consensus 11 ~~~l~~f~~~La~Ll~sGv~l~~aL~~~~~~~~~~~~~~~~~~i~~~l~~G~~ls~Al~~~~~-----~f~~~~i~mi~~ 85 (123)
T 3c1q_A 11 TPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPH-----VFDELFRSMVAA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCSCHHHHHHHHHHHHHHHTTCCHHHHHTTCTT-----TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCC-----CCCHHHHHHHHH
T ss_conf 999999999999999869989999999971441289999999999999845539999987545-----586999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7425746899999999999999999999998643
Q gi|254780722|r 92 SQLGGNLSEALANLSRILRDRKNMKAKVQALSME 125 (187)
Q Consensus 92 ~~~gg~~~~~L~~la~~~~~~~~~~~~~~~~~a~ 125 (187)
+|.+|++.+.|.+++++++++.+++++++.+++.
T Consensus 86 GE~sG~L~~~l~~la~~~e~~~~~~~kik~A~~~ 119 (123)
T 3c1q_A 86 GEKSGHLDSVLERLADYAENRQKMRSKLQQASEN 119 (123)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9874779999999999999999999999999998
No 2
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transport; 2.05A {Thermus thermophilus}
Probab=99.10 E-value=7.4e-10 Score=78.49 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999995699989999999992484-2899999999986303888899999775348734799999999987
Q gi|254780722|r 14 DDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSD-PVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQS 92 (187)
Q Consensus 14 ~~l~~~l~~l~~~l~aG~sl~~Al~~~a~~~~~-~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 92 (187)
.++..|.+.++.+++||.++.+|++.+++...+ .+++.+..+..++..|.++.+|+.+. +.|..+...++..+
T Consensus 13 ~~l~~f~~~la~ll~sGi~l~~aL~~~~~~~~~~~~~~~l~~i~~~l~~G~~ls~al~~~------~~f~~~~~~mi~~G 86 (116)
T 2whn_A 13 KDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKH------KIFSRLYVNLVRAG 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHTTSCCSHHHHHHHHHHHHHHHTTCCHHHHHHTS------TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHH------CCCCHHHHHHHHHH
T ss_conf 999999999999999699899999999988427899999999999987563889998610------47978999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 425746899999999999999999999998
Q gi|254780722|r 93 QLGGNLSEALANLSRILRDRKNMKAKVQAL 122 (187)
Q Consensus 93 ~~gg~~~~~L~~la~~~~~~~~~~~~~~~~ 122 (187)
|.+|++.++|.+++++++++.+.+++++++
T Consensus 87 E~sG~L~~~l~~la~~~e~~~~~~~ki~~A 116 (116)
T 2whn_A 87 ETSGGLDLILDRLASFLEKELELRGKIRSA 116 (116)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 973879999999999999999999987675
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=92.32 E-value=0.48 Score=24.11 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 456779999999999999999787899999508008999999999999999999
Q gi|254780722|r 126 AKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVM 179 (187)
Q Consensus 126 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~g~~~i 179 (187)
.+.+..-+.++|+.++.-++.+|-..+ +....+.|-+++.+..+..+++.++.
T Consensus 304 k~LTiis~IFlPlTfIaGiyGMNf~~m-Pel~~~~gy~~~l~~m~~~~~~~~~~ 356 (363)
T 2iub_A 304 KVLTIIATIFMPLTFIAGIYGMNFEYM-PELRWKWGYPVVLAVMGVIAVIMVVY 356 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC---------------CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999981655646999-85457679999999999999999999
No 4
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3l8j_A
Probab=55.78 E-value=8.4 Score=16.44 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 95699989999999992484289999999998630388889999977534873479--9999999987425746899999
Q gi|254780722|r 27 VRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRMVRYMPLQEVS--FFSTVISVQSQLGGNLSEALAN 104 (187)
Q Consensus 27 l~aG~sl~~Al~~~a~~~~~~l~~e~~~i~~~~~~G~~~~~al~~~~~~~~~~~~~--~~~~~l~~~~~~gg~~~~~L~~ 104 (187)
+.+..++..|+..+-++.||-..+-+..+.++.....++.+++.+++.. +..++. +--.....-.+....+..+|.+
T Consensus 31 ~~A~QtLRaAf~kaE~~~PGft~d~v~gil~~~~~~iN~~ESlLR~a~~-d~eey~~~R~E~~f~eL~~~A~aLK~ILSr 109 (213)
T 3ajm_A 31 LSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAAD-DVEEYMIERPEPEFQDLNEKARALKQILSK 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-CCTTTCCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999870199758999999998348776716999988506-603120167868999999999999999972
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780722|r 105 LSRILRDRKNMKAKVQA 121 (187)
Q Consensus 105 la~~~~~~~~~~~~~~~ 121 (187)
+-+.+.++..+-.-++-
T Consensus 110 IPdEi~dR~~FL~tIK~ 126 (213)
T 3ajm_A 110 IPDEINDRVRFLQTIKD 126 (213)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred CCHHHHCCHHHHHHHHH
T ss_conf 97765151989999999
No 5
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=41.32 E-value=14 Score=15.04 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999874257468999999999999999
Q gi|254780722|r 82 SFFSTVISVQSQLGGNLSEALANLSRILRDRKN 114 (187)
Q Consensus 82 ~~~~~~l~~~~~~gg~~~~~L~~la~~~~~~~~ 114 (187)
..|...+.-..-.|-++.+.++...+++.+-.+
T Consensus 215 d~~saaiaa~La~G~~l~~Av~~A~~~v~~aI~ 247 (282)
T 3h74_A 215 DTLAAVIAGLLGRGYPLAPTLARANQWLNMAVA 247 (282)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999998699999999999999999999
No 6
>1xkp_A Putative membrane-bound YOP targeting protein YOPN; YOPN, type III secretion, SYCN, membrane protein/chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=26.42 E-value=25 Score=13.53 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=5.0
Q ss_pred CHHHHHHHHHHHCCC
Q ss_conf 888999997753487
Q gi|254780722|r 64 SLSESISRMVRYMPL 78 (187)
Q Consensus 64 ~~~~al~~~~~~~~~ 78 (187)
++.+-+..+....+.
T Consensus 86 s~~~l~~~l~~~f~D 100 (246)
T 1xkp_A 86 SLSQLXAYLEGXSEE 100 (246)
T ss_dssp CHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHCCC
T ss_conf 999999999875798
No 7
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=22.39 E-value=30 Score=13.05 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999863
Q gi|254780722|r 50 SEFRRVIETQH 60 (187)
Q Consensus 50 ~e~~~i~~~~~ 60 (187)
+|+++..+++.
T Consensus 344 ~el~r~~~~l~ 354 (404)
T 1gpj_A 344 RELERALRRLK 354 (404)
T ss_dssp HHHHHHHSCSC
T ss_pred HHHHHHHHHCC
T ss_conf 99999997568
No 8
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=20.63 E-value=32 Score=12.83 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=30.1
Q ss_pred HCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHCCCHH
Q ss_conf 248428999999999-86303888899999775348734
Q gi|254780722|r 43 QSSDPVRSEFRRVIE-TQHLGLSLSESISRMVRYMPLQE 80 (187)
Q Consensus 43 ~~~~~l~~e~~~i~~-~~~~G~~~~~al~~~~~~~~~~~ 80 (187)
+...|++.+++...+ ++..|.+-.+-+..+..||+...
T Consensus 39 ~S~s~~A~dmr~~I~~~i~~G~sd~eI~~~l~~rYG~~I 77 (84)
T 2hl7_A 39 DSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFV 77 (84)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
T ss_conf 078789999999999999969999999999998628838
No 9
>2imh_A Hypothetical protein UNP Q5LQD5_silpo; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.57A {Silicibacter pomeroyi} SCOP: d.153.1.7
Probab=19.68 E-value=27 Score=13.33 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=42.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH----------------------------HHHHHHCCCCHHHHHHHHH
Q ss_conf 999999569998999999999248428999999----------------------------9998630388889999977
Q gi|254780722|r 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRR----------------------------VIETQHLGLSLSESISRMV 73 (187)
Q Consensus 22 ~l~~~l~aG~sl~~Al~~~a~~~~~~l~~e~~~----------------------------i~~~~~~G~~~~~al~~~~ 73 (187)
..-..++.|.+..+++..+.+..+++-.+.+.- +.-++-.|..+.+++.+..
T Consensus 56 ~~L~~l~~G~s~~~al~~l~~~D~~~~~RQ~~vvD~~G~~a~~TG~~~~~~~gh~~g~~~~v~GN~L~~~~Vl~aM~~af 135 (231)
T 2imh_A 56 EVLQHLRDGSHPEDAVNHVTSQDSGRAYRQLAAMDLLGNAAAFTGSENQDIKGSVTFASGIASGNMLGDNSVLGAMTEAF 135 (231)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTCTTGGGCEEEEEETTSCEEEEECTTSCSSCEEEEETTEEEEEESCSCTHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHEEECCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 99999986999999999997039876631489981899889998867732301410698698706668813999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 5348734799999999987425746
Q gi|254780722|r 74 RYMPLQEVSFFSTVISVQSQLGGNL 98 (187)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~gg~~ 98 (187)
+...-+--.++..+|......||+.
T Consensus 136 ~~~~~~LaeRLl~AL~AG~~aGGD~ 160 (231)
T 2imh_A 136 VASDLTFERRLLAALIAAEGAGSDF 160 (231)
T ss_dssp HHCCSCHHHHHHHHHHHHHHTC---
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8568989999999999999738985
No 10
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A*
Probab=18.54 E-value=36 Score=12.54 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHHHHCC-CHHHHHHHHHH
Q ss_conf 899999999986-303888899999775348-73479999999
Q gi|254780722|r 48 VRSEFRRVIETQ-HLGLSLSESISRMVRYMP-LQEVSFFSTVI 88 (187)
Q Consensus 48 l~~e~~~i~~~~-~~G~~~~~al~~~~~~~~-~~~~~~~~~~l 88 (187)
..++++++.+.+ +.+.++++++.++....+ +++.+.|+..+
T Consensus 206 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 248 (259)
T 3hsq_A 206 VRNAIKHAYKVIYHSGISTRKALDELEASGNLIEQVKYIIKFF 248 (259)
T ss_dssp HHHHHHHHHHHHHSSSSCHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999997279989999999986457989999999999
Done!