RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (187 letters) >3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A* (A:) Length = 123 Score = 65.3 bits (159), Expect = 5e-12 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDP-VRSEFRRVIETQ 59 M K+ + D + V++G P+ + + + QS P +R+ V Sbjct: 1 MGFAFKRGISTP--DLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKV 58 Query: 60 HLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKV 119 G +LS+S+ F + ++ + G+L L L+ +R+ ++K+ Sbjct: 59 TEGYTLSDSLGDYPHVFD----ELFRSXVA-AGEKSGHLDSVLERLADYAENRQKXRSKL 113 Query: 120 QALSME 125 Q S Sbjct: 114 QQASEN 119 >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} (A:233-468) Length = 236 Score = 33.0 bits (74), Expect = 0.028 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 1/93 (1%) Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 LG N ALA ++R R N K V +S + +I + + Sbjct: 1 LGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQ 60 Query: 154 VLI-NDPRGHMLLGVAAAFMLIGIMVMRLMINF 185 I + V + + G ++ MI Sbjct: 61 TKIGAETVLTNGTYVVDSTIGAGAVITNSMIEE 93 >3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann-like fold, LEFT-handed-beta-helix, trimer, cell shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A* (A:236-495) Length = 260 Score = 31.2 bits (69), Expect = 0.10 Identities = 10/86 (11%), Positives = 24/86 (27%) Query: 101 ALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPR 160 LA L+ L R ++ +++ A+ WI + T+++ + I Sbjct: 8 QLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRC 67 Query: 161 GHMLLGVAAAFMLIGIMVMRLMINFD 186 + + Sbjct: 68 VVGPDTTLTDVAVGDGASVVRTHGSS 93 >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* (A:224-456) Length = 233 Score = 30.0 bits (66), Expect = 0.18 Identities = 13/64 (20%), Positives = 25/64 (39%) Query: 95 GGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNV 154 G N LA L R ++++ K ++ + + A + G+L + NV Sbjct: 2 GANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNV 61 Query: 155 LIND 158 + D Sbjct: 62 KLGD 65 >1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} (A:223-456) Length = 234 Score = 28.9 bits (63), Expect = 0.45 Identities = 11/65 (16%), Positives = 22/65 (33%) Query: 94 LGGNLSEALANLSRILRDRKNMKAKVQALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMN 153 G N L+ L R+ + + K + + + A + G+L + N Sbjct: 2 EGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGN 61 Query: 154 VLIND 158 V + Sbjct: 62 VTLGH 66 >2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Methanocaldococcus jannaschii DSM2661} (A:1-104,A:205-238) Length = 138 Score = 26.6 bits (59), Expect = 1.9 Identities = 7/28 (25%), Positives = 13/28 (46%) Query: 14 DDFPNALDIIVRSVRAGLPVSDAVAVIV 41 A DI+ + + GL +SD ++ Sbjct: 53 KYLDEAFDILKEAYKKGLGISDRFGIVE 80 >1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} (A:1-99,A:400-639) Length = 339 Score = 26.5 bits (58), Expect = 2.6 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 8/65 (12%) Query: 72 MVRYMPLQEVSFFSTVISVQS-------QLGGNLSEALANLSRILRDRKNMKAKVQALSM 124 Y P E + + S S + + +L ++ + R+ +K A Sbjct: 270 GACYNPQPE-AITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSRQPADSKPPAPKE 328 Query: 125 EAKAS 129 +A+ Sbjct: 329 KARGP 333 >3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, activator, chromosomal protein, coiled coil, DNA damage; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* (A:1-177) Length = 177 Score = 26.3 bits (58), Expect = 2.7 Identities = 11/130 (8%), Positives = 38/130 (29%), Gaps = 7/130 (5%) Query: 13 LDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI--- 69 D F ++++ +++ ++G S+ + ++ L ++ Sbjct: 10 FDVFKKRIELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIAL 69 Query: 70 -SRMVRYMPLQ-EVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAK 127 V + + I + ++ L R ++ + K + Sbjct: 70 VPGKVIIITSSAKAKHLQKAIDLFKDPESKIT--LELWQRNNKEPELNKKLFDDVIALIN 127 Query: 128 ASAWIIGSLP 137 ++ +G Sbjct: 128 SAGKTVGIPE 137 >1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} (A:) Length = 336 Score = 25.9 bits (56), Expect = 3.3 Identities = 11/42 (26%), Positives = 15/42 (35%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVG 42 + A L P D+IV G +SD + I G Sbjct: 194 YSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAG 235 >2hzg_A Mandelate racemase/muconate lactonizing enzyme/enolase superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} (A:1-126,A:349-401) Length = 179 Score = 25.3 bits (55), Expect = 5.3 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 28 RAGLPVSDAVAVIVGQSSD-PVRSEFR---RVIETQHLGLSLSESISRMVRYMPLQEVSF 83 + A+ ++G+ P + + + GL L + S + RY+ E+ Sbjct: 101 HMLSGIEMALWDLLGRRLSAPAWALLDAEGLIRAPEAPGLGLQVAASALRRYLVETEIRI 160 Query: 84 FSTVISVQSQLGGN 97 +I QL G+ Sbjct: 161 GGQLIYRTPQLEGH 174 >2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; NP_744337.1, putative tRNA-(MS(2)IO(6)A)-hydroxylase, structural genomics, PSI-2; 2.05A {Pseudomonas putida KT2440} (A:1-89) Length = 89 Score = 25.1 bits (55), Expect = 7.1 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 98 LSEALANLSRILRDRKN--MKAKVQALSMEAK 127 + ALA+ +L D KN KA ALS+ AK Sbjct: 21 IEAALADQETLLIDHKNCEFKAASTALSLIAK 52 >2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} (A:) Length = 197 Score = 24.4 bits (53), Expect = 9.5 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 13/62 (20%) Query: 4 LIKKRTA----KFLDDFPNA--LDIIVRSVRAGLPVSDAV-------AVIVGQSSDPVRS 50 LI A L+D P A +D++ R L +S + +++G S P Sbjct: 8 LIVGNKAFTQPFSLNDLPGAGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPKSI 67 Query: 51 EF 52 Sbjct: 68 LI 69 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.136 0.380 Gapped Lambda K H 0.267 0.0595 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,311,576 Number of extensions: 52559 Number of successful extensions: 215 Number of sequences better than 10.0: 1 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 23 Length of query: 187 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 104 Effective length of database: 2,150,234 Effective search space: 223624336 Effective search space used: 223624336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.1 bits)