RPSBLAST alignment of GI: 254780722 and protein with PDBid: 3c1q
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A* Length = 123
Score = 41.5 bits (97), Expect = 1e-04
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 27 VRAGLPVSDAVAVIVGQSSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFS 85
V++G+P+ + + + QS P R+ V G +LS+S+ F
Sbjct: 25 VQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD----ELFR 80
Query: 86 TVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSM 124
++++ + G+L L L+ +R+ M++K+Q S
Sbjct: 81 SMVAAGEK-SGHLDSVLERLADYAENRQKMRSKLQQASE 118