RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (187 letters)



>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase
           PP2188 {Pseudomonas putida [TaxId: 303]}
          Length = 199

 Score = 25.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 98  LSEALANLSRILRDRKN--MKAKVQALSM 124
           +  ALA+   +L D KN   KA   ALS+
Sbjct: 18  IEAALADQETLLIDHKNCEFKAASTALSL 46


>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 194

 Score = 24.4 bits (53), Expect = 6.2
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 6  KKRTAKF-LDDFPNA--LDIIVRSVRAGLPVS-----DAVAVIV--GQSSDPVRSEF 52
          K  T  F L+D P A  +D++ R     L +S     D    ++  G  S P     
Sbjct: 10 KAFTQPFSLNDLPGAGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPKSILI 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 647,363
Number of extensions: 27172
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 14
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.1 bits)