RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (187 letters) >d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]} Length = 199 Score = 25.2 bits (55), Expect = 3.7 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%) Query: 98 LSEALANLSRILRDRKN--MKAKVQALSM 124 + ALA+ +L D KN KA ALS+ Sbjct: 18 IEAALADQETLLIDHKNCEFKAASTALSL 46 >d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 194 Score = 24.4 bits (53), Expect = 6.2 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 6 KKRTAKF-LDDFPNA--LDIIVRSVRAGLPVS-----DAVAVIV--GQSSDPVRSEF 52 K T F L+D P A +D++ R L +S D ++ G S P Sbjct: 10 KAFTQPFSLNDLPGAGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPPSPPKSILI 66 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.136 0.380 Gapped Lambda K H 0.267 0.0720 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 647,363 Number of extensions: 27172 Number of successful extensions: 96 Number of sequences better than 10.0: 1 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 14 Length of query: 187 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 107 Effective length of database: 1,309,196 Effective search space: 140083972 Effective search space used: 140083972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.1 bits)