BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (187 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 187 Score = 380 bits (975), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH Sbjct: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60 Query: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ Sbjct: 61 LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120 Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180 Query: 181 LMINFDV 187 LMINFDV Sbjct: 181 LMINFDV 187 >gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 30.4 bits (67), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 17/110 (15%) Query: 1 MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57 + +L++KR + +P+ALD+++ V +G+ + A VA +G S P+ Sbjct: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL--------- 218 Query: 58 TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107 ++ + L+++E + ++P ++V+F + Q N ++AL R Sbjct: 219 SEEMLLTIAE-----LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263 >gi|254780594|ref|YP_003065007.1| Glutathione S-transferase domain protein [Candidatus Liberibacter asiaticus str. psy62] Length = 230 Score = 29.3 bits (64), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 16/93 (17%) Query: 44 SSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102 S+DP+ R+E RR+IE + + ++R PL + ++ + Q GG+ Sbjct: 86 STDPLQRAETRRMIEW--FMYQMEQDVTR-----PLAHERVYKLHMTTE-QGGGSPD--- 134 Query: 103 ANLSRILR-DRKNMKAKVQALSMEAKASAWIIG 134 S++LR R NM+ ++ ++ K+ +WI G Sbjct: 135 ---SKVLRIARNNMREHIKYITWLIKSRSWIAG 164 >gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 766 Score = 24.6 bits (52), Expect = 1.2, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 29/51 (56%) Query: 22 IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72 +I+ G+ + + +GQ +P+ +++ + I LGL++S++++ + Sbjct: 693 VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNL 743 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 23.5 bits (49), Expect = 2.8, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%) Query: 10 AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69 A+ + F N D VR+ RA ++A+ + +D +++ F QH+ L + Sbjct: 536 AQTMLTFVNVTDS-VRAERALTEKNEAL-----RKADEIKNSF-----VQHVSYELRSPL 584 Query: 70 SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129 + ++ + L + S ++ S QSQ +S + L ++ D ++ A V A M+ S Sbjct: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL-ATVDAGIMKLNYS 643 Query: 130 AWIIGSL 136 ++ L Sbjct: 644 TIVLNDL 650 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.136 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,336 Number of Sequences: 1233 Number of extensions: 3409 Number of successful extensions: 12 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 8 length of query: 187 length of database: 328,796 effective HSP length: 69 effective length of query: 118 effective length of database: 243,719 effective search space: 28758842 effective search space used: 28758842 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 36 (18.5 bits)