BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780722|ref|YP_003065135.1| pilus assembly protein
[Candidatus Liberibacter asiaticus str. psy62]
         (187 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 187

 Score =  380 bits (975), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60
           MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH
Sbjct: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQH 60

Query: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120
           LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ
Sbjct: 61  LGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQ 120

Query: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180
           ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR
Sbjct: 121 ALSMEAKASAWIIGSLPFCVSTLVYFTSPGYMNVLINDPRGHMLLGVAAAFMLIGIMVMR 180

Query: 181 LMINFDV 187
           LMINFDV
Sbjct: 181 LMINFDV 187


>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 329

 Score = 30.4 bits (67), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 17/110 (15%)

Query: 1   MKHLIKKRTAKFLDDFPNALDIIVRSVRAGLPVSDA---VAVIVGQSSDPVRSEFRRVIE 57
           + +L++KR +     +P+ALD+++  V +G+ +  A   VA  +G  S P+         
Sbjct: 168 ISNLVQKRQSSIKRAWPDALDLLLICVESGISIDQALRRVAEDIGGQSVPL--------- 218

Query: 58  TQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSR 107
           ++ + L+++E     + ++P ++V+F +     Q     N ++AL    R
Sbjct: 219 SEEMLLTIAE-----LSFLPNRQVAFENFYNRTQMDCVRNATQALIQSDR 263


>gi|254780594|ref|YP_003065007.1| Glutathione S-transferase domain protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 230

 Score = 29.3 bits (64), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 16/93 (17%)

Query: 44  SSDPV-RSEFRRVIETQHLGLSLSESISRMVRYMPLQEVSFFSTVISVQSQLGGNLSEAL 102
           S+DP+ R+E RR+IE       + + ++R     PL     +   ++ + Q GG+     
Sbjct: 86  STDPLQRAETRRMIEW--FMYQMEQDVTR-----PLAHERVYKLHMTTE-QGGGSPD--- 134

Query: 103 ANLSRILR-DRKNMKAKVQALSMEAKASAWIIG 134
              S++LR  R NM+  ++ ++   K+ +WI G
Sbjct: 135 ---SKVLRIARNNMREHIKYITWLIKSRSWIAG 164


>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 766

 Score = 24.6 bits (52), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 29/51 (56%)

Query: 22  IIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESISRM 72
           +I+     G+ +  +    +GQ  +P+ +++ + I    LGL++S++++ +
Sbjct: 693 VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLGLAISDALTNL 743


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 23.5 bits (49), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 10  AKFLDDFPNALDIIVRSVRAGLPVSDAVAVIVGQSSDPVRSEFRRVIETQHLGLSLSESI 69
           A+ +  F N  D  VR+ RA    ++A+     + +D +++ F      QH+   L   +
Sbjct: 536 AQTMLTFVNVTDS-VRAERALTEKNEAL-----RKADEIKNSF-----VQHVSYELRSPL 584

Query: 70  SRMVRYMPLQEVSFFSTVISVQSQLGGNLSEALANLSRILRDRKNMKAKVQALSMEAKAS 129
           + ++ +  L + S   ++ S QSQ    +S +   L  ++ D  ++ A V A  M+   S
Sbjct: 585 TNIIGFTDLLKTSKLGSLNSKQSQYVEYISASSTILLNLVNDILDL-ATVDAGIMKLNYS 643

Query: 130 AWIIGSL 136
             ++  L
Sbjct: 644 TIVLNDL 650


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.136    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,336
Number of Sequences: 1233
Number of extensions: 3409
Number of successful extensions: 12
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 8
length of query: 187
length of database: 328,796
effective HSP length: 69
effective length of query: 118
effective length of database: 243,719
effective search space: 28758842
effective search space used: 28758842
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 36 (18.5 bits)